Multiple sequence alignment - TraesCS5B01G363900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G363900 chr5B 100.000 6626 0 0 1 6626 542925964 542932589 0.000000e+00 12237.0
1 TraesCS5B01G363900 chr5B 87.629 97 9 3 8 101 45382844 45382748 7.020000e-20 110.0
2 TraesCS5B01G363900 chr5B 97.778 45 1 0 6145 6189 542932068 542932112 1.980000e-10 78.7
3 TraesCS5B01G363900 chr5B 97.778 45 1 0 6105 6149 542932108 542932152 1.980000e-10 78.7
4 TraesCS5B01G363900 chr5B 88.889 45 3 2 1 44 427172172 427172215 3.000000e-03 54.7
5 TraesCS5B01G363900 chr5A 96.571 5453 134 20 730 6147 562535745 562541179 0.000000e+00 8985.0
6 TraesCS5B01G363900 chr5A 82.534 584 56 15 191 761 562535182 562535732 7.780000e-129 472.0
7 TraesCS5B01G363900 chr5A 94.915 59 3 0 6476 6534 562541321 562541379 7.070000e-15 93.5
8 TraesCS5B01G363900 chr5A 100.000 30 0 0 148 177 562534722 562534693 1.000000e-03 56.5
9 TraesCS5B01G363900 chr5D 96.708 4313 108 11 1860 6147 445199903 445204206 0.000000e+00 7147.0
10 TraesCS5B01G363900 chr5D 92.456 1710 78 32 191 1870 445198193 445199881 0.000000e+00 2396.0
11 TraesCS5B01G363900 chr5D 95.588 68 3 0 6316 6383 445204287 445204354 7.020000e-20 110.0
12 TraesCS5B01G363900 chr5D 96.610 59 2 0 6476 6534 445204352 445204410 1.520000e-16 99.0
13 TraesCS5B01G363900 chr5D 100.000 30 0 0 148 177 445197733 445197704 1.000000e-03 56.5
14 TraesCS5B01G363900 chr3B 83.392 3432 544 21 2122 5543 80167860 80164445 0.000000e+00 3157.0
15 TraesCS5B01G363900 chr3B 86.381 536 63 7 1150 1677 80168871 80168338 1.600000e-160 577.0
16 TraesCS5B01G363900 chr3B 85.185 108 12 3 2 106 556904067 556903961 2.530000e-19 108.0
17 TraesCS5B01G363900 chr3B 86.316 95 8 4 2 92 556925296 556925203 1.520000e-16 99.0
18 TraesCS5B01G363900 chr3B 100.000 34 0 0 6246 6279 40942829 40942862 5.550000e-06 63.9
19 TraesCS5B01G363900 chr3B 92.683 41 1 2 6248 6288 96842487 96842525 2.580000e-04 58.4
20 TraesCS5B01G363900 chr3B 100.000 31 0 0 148 178 410946204 410946174 2.580000e-04 58.4
21 TraesCS5B01G363900 chr3A 83.803 1988 306 12 2077 4059 63563411 63561435 0.000000e+00 1873.0
22 TraesCS5B01G363900 chr3A 83.703 1442 227 7 4115 5550 63561416 63559977 0.000000e+00 1354.0
23 TraesCS5B01G363900 chr3A 84.888 536 71 8 1150 1677 63564319 63563786 3.520000e-147 532.0
24 TraesCS5B01G363900 chr3A 94.737 38 1 1 1 37 121181830 121181867 2.580000e-04 58.4
25 TraesCS5B01G363900 chr3D 82.252 1279 222 4 4276 5550 50552479 50551202 0.000000e+00 1099.0
26 TraesCS5B01G363900 chr3D 83.453 417 59 8 1150 1558 50552889 50552475 4.850000e-101 379.0
27 TraesCS5B01G363900 chr3D 91.111 45 2 2 1 43 190066442 190066398 7.180000e-05 60.2
28 TraesCS5B01G363900 chr3D 97.143 35 1 0 6246 6280 555318763 555318729 7.180000e-05 60.2
29 TraesCS5B01G363900 chr2A 91.781 73 6 0 35 107 187826873 187826945 1.180000e-17 102.0
30 TraesCS5B01G363900 chr2A 88.571 70 8 0 41 110 626109315 626109384 1.180000e-12 86.1
31 TraesCS5B01G363900 chr2A 85.714 77 10 1 30 106 468257293 468257368 5.510000e-11 80.5
32 TraesCS5B01G363900 chr2A 92.683 41 1 2 139 178 572150586 572150625 2.580000e-04 58.4
33 TraesCS5B01G363900 chr6A 92.188 64 5 0 47 110 568429867 568429804 2.540000e-14 91.6
34 TraesCS5B01G363900 chr1D 87.671 73 8 1 39 111 269874436 269874365 4.260000e-12 84.2
35 TraesCS5B01G363900 chr1D 87.671 73 5 2 34 106 208393975 208393907 1.530000e-11 82.4
36 TraesCS5B01G363900 chr4D 85.185 81 11 1 26 106 384788218 384788297 1.530000e-11 82.4
37 TraesCS5B01G363900 chr2B 85.185 81 11 1 26 106 585946811 585946732 1.530000e-11 82.4
38 TraesCS5B01G363900 chr2B 97.222 36 1 0 6248 6283 742076103 742076068 2.000000e-05 62.1
39 TraesCS5B01G363900 chr2B 94.737 38 1 1 6246 6282 733151150 733151187 2.580000e-04 58.4
40 TraesCS5B01G363900 chr7A 97.297 37 0 1 6248 6283 73807242 73807278 2.000000e-05 62.1
41 TraesCS5B01G363900 chr7A 100.000 30 0 0 148 177 66410737 66410766 1.000000e-03 56.5
42 TraesCS5B01G363900 chr1B 94.872 39 2 0 1 39 346672738 346672700 2.000000e-05 62.1
43 TraesCS5B01G363900 chr7B 97.143 35 1 0 6248 6282 504475164 504475130 7.180000e-05 60.2
44 TraesCS5B01G363900 chr7B 92.683 41 2 1 1 40 128187589 128187549 2.580000e-04 58.4
45 TraesCS5B01G363900 chr4B 97.143 35 1 0 6248 6282 551263547 551263513 7.180000e-05 60.2
46 TraesCS5B01G363900 chr4B 100.000 30 0 0 148 177 92945808 92945779 1.000000e-03 56.5
47 TraesCS5B01G363900 chr7D 92.500 40 3 0 1 40 291708699 291708660 2.580000e-04 58.4
48 TraesCS5B01G363900 chr7D 94.444 36 1 1 143 177 13039275 13039310 3.000000e-03 54.7
49 TraesCS5B01G363900 chr6B 94.737 38 1 1 6248 6285 466985333 466985297 2.580000e-04 58.4
50 TraesCS5B01G363900 chr6B 100.000 31 0 0 148 178 540838930 540838960 2.580000e-04 58.4
51 TraesCS5B01G363900 chr4A 100.000 30 0 0 148 177 605796827 605796856 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G363900 chr5B 542925964 542932589 6625 False 4131.466667 12237 98.518667 1 6626 3 chr5B.!!$F2 6625
1 TraesCS5B01G363900 chr5A 562535182 562541379 6197 False 3183.500000 8985 91.340000 191 6534 3 chr5A.!!$F1 6343
2 TraesCS5B01G363900 chr5D 445198193 445204410 6217 False 2438.000000 7147 95.340500 191 6534 4 chr5D.!!$F1 6343
3 TraesCS5B01G363900 chr3B 80164445 80168871 4426 True 1867.000000 3157 84.886500 1150 5543 2 chr3B.!!$R4 4393
4 TraesCS5B01G363900 chr3A 63559977 63564319 4342 True 1253.000000 1873 84.131333 1150 5550 3 chr3A.!!$R1 4400
5 TraesCS5B01G363900 chr3D 50551202 50552889 1687 True 739.000000 1099 82.852500 1150 5550 2 chr3D.!!$R3 4400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 700 0.041135 GTACGCCGCTGAGCTACTAG 60.041 60.000 1.78 0.00 0.00 2.57 F
1649 1736 1.078759 GTCATCCGCTGTGTCTTCGG 61.079 60.000 0.00 0.00 44.16 4.30 F
1956 2110 0.321653 GCACATGGAAACCGACTCCT 60.322 55.000 0.00 0.00 33.77 3.69 F
2898 3097 2.159114 TCCTTTTTGGCAGTTGAAGTGC 60.159 45.455 16.33 16.33 43.61 4.40 F
4371 4573 1.089112 CGCTTGATGATGAAGGCACA 58.911 50.000 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 1770 0.169009 GCAATTCCACCTGCTCGTTC 59.831 55.000 0.00 0.0 35.62 3.95 R
2898 3097 1.688735 TCAGGATCATTACTGCCCTCG 59.311 52.381 0.00 0.0 34.76 4.63 R
3571 3770 3.194005 TGTCCTCTTTGACTTCCACAC 57.806 47.619 0.00 0.0 36.21 3.82 R
4473 4675 0.037303 AAGGCATCACTGTGGACTGG 59.963 55.000 8.11 0.0 0.00 4.00 R
6023 6242 0.034089 ATAAGGGACTGGGTGCAAGC 60.034 55.000 0.00 0.0 40.86 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.741027 GGCACTAAATTAATAGGTTAGTCCC 57.259 40.000 7.71 5.71 36.22 4.46
25 26 7.284820 GGCACTAAATTAATAGGTTAGTCCCA 58.715 38.462 11.35 0.00 36.21 4.37
26 27 7.776500 GGCACTAAATTAATAGGTTAGTCCCAA 59.224 37.037 11.35 0.00 36.21 4.12
27 28 9.181061 GCACTAAATTAATAGGTTAGTCCCAAA 57.819 33.333 7.71 0.00 36.22 3.28
32 33 8.465273 AATTAATAGGTTAGTCCCAAAGATGC 57.535 34.615 0.00 0.00 36.75 3.91
33 34 5.717119 AATAGGTTAGTCCCAAAGATGCT 57.283 39.130 0.00 0.00 36.75 3.79
34 35 6.824958 AATAGGTTAGTCCCAAAGATGCTA 57.175 37.500 0.00 0.00 36.75 3.49
35 36 7.394144 AATAGGTTAGTCCCAAAGATGCTAT 57.606 36.000 0.00 0.00 36.75 2.97
36 37 8.506196 AATAGGTTAGTCCCAAAGATGCTATA 57.494 34.615 0.00 0.00 36.75 1.31
37 38 6.824958 AGGTTAGTCCCAAAGATGCTATAA 57.175 37.500 0.00 0.00 36.75 0.98
38 39 7.208064 AGGTTAGTCCCAAAGATGCTATAAA 57.792 36.000 0.00 0.00 36.75 1.40
39 40 7.639378 AGGTTAGTCCCAAAGATGCTATAAAA 58.361 34.615 0.00 0.00 36.75 1.52
40 41 8.113462 AGGTTAGTCCCAAAGATGCTATAAAAA 58.887 33.333 0.00 0.00 36.75 1.94
41 42 8.914011 GGTTAGTCCCAAAGATGCTATAAAAAT 58.086 33.333 0.00 0.00 0.00 1.82
109 110 9.821662 TTATACATACATTCGAGACGTATGAAG 57.178 33.333 25.36 9.78 43.30 3.02
110 111 5.520632 ACATACATTCGAGACGTATGAAGG 58.479 41.667 25.36 4.91 43.30 3.46
111 112 3.438297 ACATTCGAGACGTATGAAGGG 57.562 47.619 15.12 5.61 36.92 3.95
112 113 2.100916 ACATTCGAGACGTATGAAGGGG 59.899 50.000 15.12 3.78 36.92 4.79
113 114 1.843368 TTCGAGACGTATGAAGGGGT 58.157 50.000 0.00 0.00 0.00 4.95
114 115 1.386533 TCGAGACGTATGAAGGGGTC 58.613 55.000 0.00 0.00 0.00 4.46
115 116 1.100510 CGAGACGTATGAAGGGGTCA 58.899 55.000 0.00 0.00 41.67 4.02
117 118 2.882761 CGAGACGTATGAAGGGGTCATA 59.117 50.000 0.00 0.00 45.59 2.15
253 254 5.193663 TGAAATCTCGTTCCATTTTTGCA 57.806 34.783 0.00 0.00 0.00 4.08
255 256 2.704725 TCTCGTTCCATTTTTGCAGC 57.295 45.000 0.00 0.00 0.00 5.25
289 290 9.965824 ACATAAGTACAAGAAACCTGAAATTTG 57.034 29.630 0.00 0.00 0.00 2.32
326 327 7.507616 ACCCAACTTACATGAACTAAAAATGGA 59.492 33.333 0.00 0.00 0.00 3.41
328 329 7.537306 CCAACTTACATGAACTAAAAATGGACG 59.463 37.037 0.00 0.00 0.00 4.79
331 332 5.622770 ACATGAACTAAAAATGGACGTCC 57.377 39.130 28.17 28.17 0.00 4.79
345 346 2.166459 GGACGTCCATGATGTCAAGAGA 59.834 50.000 29.75 0.00 46.76 3.10
375 376 2.034179 GGTATCCAAATAAGCCGCAACC 59.966 50.000 0.00 0.00 0.00 3.77
386 387 1.664965 CCGCAACCTAGGCTATCGC 60.665 63.158 9.30 3.52 0.00 4.58
395 396 2.094494 CCTAGGCTATCGCTATGTGGTG 60.094 54.545 0.00 0.00 36.09 4.17
424 425 1.655099 CCTTCGCCGCAATGATTTTTG 59.345 47.619 0.00 0.00 0.00 2.44
431 433 4.027458 CGCCGCAATGATTTTTGATAACTG 60.027 41.667 0.00 0.00 0.00 3.16
459 461 7.931578 AACCAAACAACGATATATTGAAGGA 57.068 32.000 6.98 0.00 0.00 3.36
461 463 7.335627 ACCAAACAACGATATATTGAAGGAGA 58.664 34.615 6.98 0.00 0.00 3.71
467 469 4.762765 ACGATATATTGAAGGAGAGCTCGT 59.237 41.667 8.37 0.00 0.00 4.18
471 473 5.854010 ATATTGAAGGAGAGCTCGTTGTA 57.146 39.130 8.37 2.29 37.75 2.41
506 518 7.820386 TGGTTAAGCTAAATATCGAGTCAAACA 59.180 33.333 6.19 0.00 0.00 2.83
508 520 8.870879 GTTAAGCTAAATATCGAGTCAAACAGT 58.129 33.333 0.00 0.00 0.00 3.55
517 529 6.808008 ATCGAGTCAAACAGTGATTCAAAT 57.192 33.333 0.00 0.00 41.83 2.32
528 540 5.044919 ACAGTGATTCAAATCCTATCCCACA 60.045 40.000 0.00 0.00 34.50 4.17
535 547 5.640147 TCAAATCCTATCCCACAACAAACT 58.360 37.500 0.00 0.00 0.00 2.66
540 552 5.942961 TCCTATCCCACAACAAACTACAAA 58.057 37.500 0.00 0.00 0.00 2.83
544 556 8.147704 CCTATCCCACAACAAACTACAAATTTT 58.852 33.333 0.00 0.00 0.00 1.82
597 610 2.644798 ACAGTGGAATGGTAAAGGCTCT 59.355 45.455 0.00 0.00 0.00 4.09
602 615 0.631212 AATGGTAAAGGCTCTGGGGG 59.369 55.000 0.00 0.00 0.00 5.40
611 624 0.552848 GGCTCTGGGGGAATCAATGA 59.447 55.000 0.00 0.00 0.00 2.57
636 649 3.372060 TCTCGACACATATGATGTTCGC 58.628 45.455 10.38 0.00 42.70 4.70
655 668 2.730090 CGCGCTAAACCTTCTTCTCGTA 60.730 50.000 5.56 0.00 0.00 3.43
658 671 4.097012 CGCTAAACCTTCTTCTCGTAGTC 58.903 47.826 0.00 0.00 0.00 2.59
659 672 4.097012 GCTAAACCTTCTTCTCGTAGTCG 58.903 47.826 0.00 0.00 38.55 4.18
660 673 4.379290 GCTAAACCTTCTTCTCGTAGTCGT 60.379 45.833 0.00 0.00 38.33 4.34
661 674 5.163814 GCTAAACCTTCTTCTCGTAGTCGTA 60.164 44.000 0.00 0.00 38.33 3.43
665 678 5.108517 ACCTTCTTCTCGTAGTCGTAGTAG 58.891 45.833 0.00 0.00 38.33 2.57
676 689 1.366961 CGTAGTAGACGTACGCCGC 60.367 63.158 16.72 5.16 46.86 6.53
685 698 2.799371 GTACGCCGCTGAGCTACT 59.201 61.111 1.78 0.00 0.00 2.57
686 699 1.769098 CGTACGCCGCTGAGCTACTA 61.769 60.000 0.52 0.00 0.00 1.82
687 700 0.041135 GTACGCCGCTGAGCTACTAG 60.041 60.000 1.78 0.00 0.00 2.57
697 710 4.683781 CGCTGAGCTACTAGAATCAATTCC 59.316 45.833 1.78 0.00 37.51 3.01
715 728 2.113860 CCGAAGGCCTCTTTGATTCA 57.886 50.000 5.23 0.00 46.14 2.57
719 732 2.568623 AGGCCTCTTTGATTCAACGT 57.431 45.000 0.00 0.00 0.00 3.99
746 760 6.352137 ATTTCATGAAAAAGGAATGGCCTACC 60.352 38.462 23.91 4.69 38.43 3.18
826 882 3.312146 GCAAAAACCCACCAAACTCATTG 59.688 43.478 0.00 0.00 38.84 2.82
1649 1736 1.078759 GTCATCCGCTGTGTCTTCGG 61.079 60.000 0.00 0.00 44.16 4.30
1683 1770 3.124921 GAACCCACCGCCATCGTG 61.125 66.667 0.00 0.00 0.00 4.35
1697 1784 2.197605 TCGTGAACGAGCAGGTGGA 61.198 57.895 0.50 0.00 44.22 4.02
1920 2042 9.507329 TCTTAGTTTTCTAAATGCTGTCATTCT 57.493 29.630 0.00 0.00 41.77 2.40
1932 2054 5.005740 TGCTGTCATTCTAGCAATTTGACT 58.994 37.500 0.00 0.00 46.06 3.41
1944 2067 3.054166 CAATTTGACTGTGTGCACATGG 58.946 45.455 24.69 19.92 41.01 3.66
1947 2070 2.049888 TGACTGTGTGCACATGGAAA 57.950 45.000 24.69 6.60 41.01 3.13
1956 2110 0.321653 GCACATGGAAACCGACTCCT 60.322 55.000 0.00 0.00 33.77 3.69
2059 2215 3.074675 TGGTGTATTAATGTGGCGGTT 57.925 42.857 0.00 0.00 0.00 4.44
2082 2281 4.576873 TCGTTTGTTCCACAGATTAGCAAA 59.423 37.500 0.00 0.00 0.00 3.68
2203 2402 3.584406 TCAAGACAAGGACATGATGGAGT 59.416 43.478 0.00 0.00 0.00 3.85
2297 2496 3.159213 TGTGAGCCAAAGGATGAATGT 57.841 42.857 0.00 0.00 0.00 2.71
2898 3097 2.159114 TCCTTTTTGGCAGTTGAAGTGC 60.159 45.455 16.33 16.33 43.61 4.40
3174 3373 6.261381 TGGTACTTCACGAATTTGCTAAAACT 59.739 34.615 0.00 0.00 0.00 2.66
3432 3631 6.702329 AGAAGACTTTATCAGGAACAATCGT 58.298 36.000 0.00 0.00 0.00 3.73
3571 3770 4.899239 GCCGCTGGGTCGATCTGG 62.899 72.222 0.00 0.00 34.97 3.86
3804 4003 3.253921 TGAATGATCTTGTTGTGGCACTG 59.746 43.478 19.83 4.24 0.00 3.66
3830 4029 4.701956 AGTTCACCACTTTGTTGAACAG 57.298 40.909 16.07 0.00 40.68 3.16
3939 4138 5.967088 ACTTATGGTGATCATATACGGAGC 58.033 41.667 0.00 0.00 38.08 4.70
3967 4166 9.323985 GATGGAGGAATATAGTAGATTGCATTC 57.676 37.037 11.03 0.16 0.00 2.67
3981 4180 5.474532 AGATTGCATTCTAAGACTGCACAAA 59.525 36.000 9.34 0.00 45.26 2.83
4077 4279 3.367703 GCAAGCTTGGTTCATATGCACTT 60.368 43.478 27.10 0.00 32.80 3.16
4078 4280 4.171005 CAAGCTTGGTTCATATGCACTTG 58.829 43.478 19.14 2.70 0.00 3.16
4079 4281 2.165030 AGCTTGGTTCATATGCACTTGC 59.835 45.455 5.47 7.41 42.50 4.01
4161 4363 5.548406 AGGTTTAGCCAACTACTGTACTTG 58.452 41.667 0.00 1.60 40.61 3.16
4165 4367 7.325694 GTTTAGCCAACTACTGTACTTGGATA 58.674 38.462 22.55 19.06 34.86 2.59
4371 4573 1.089112 CGCTTGATGATGAAGGCACA 58.911 50.000 0.00 0.00 0.00 4.57
4473 4675 7.744087 TTATGAGCACATAACCCATATTGTC 57.256 36.000 11.92 0.00 41.98 3.18
4554 4756 1.271379 TGCCAGAGGTTGCTTCCTTAC 60.271 52.381 2.13 0.00 38.02 2.34
4557 4759 3.486383 CCAGAGGTTGCTTCCTTACAAA 58.514 45.455 2.13 0.00 38.02 2.83
4710 4912 2.335092 AATCTCAGATGGGCTGGCGG 62.335 60.000 0.00 0.00 44.98 6.13
4797 4999 4.639310 GCTCTGGTTTTCATCATGTCTGAT 59.361 41.667 0.00 0.00 43.02 2.90
4828 5030 3.307691 CCTCTCACCTGCCAACTTTATCA 60.308 47.826 0.00 0.00 0.00 2.15
5031 5233 2.715046 CTAGTGCAGGCATTGAGGAAA 58.285 47.619 0.00 0.00 0.00 3.13
5073 5275 0.613260 AAGTGAGGAACCATGCGCTA 59.387 50.000 9.73 0.00 0.00 4.26
5518 5723 2.664851 TCAACAAGGTCGCGCCAG 60.665 61.111 19.30 13.92 40.61 4.85
5556 5761 2.787473 TCCCTGACAATGAAAGCGAT 57.213 45.000 0.00 0.00 0.00 4.58
5584 5789 1.375268 GAAGGCGAGCAGAGCAAGT 60.375 57.895 0.00 0.00 36.08 3.16
5616 5821 2.437897 CAGGAGGGCCAAACTGCT 59.562 61.111 6.18 0.00 37.08 4.24
5627 5832 1.747355 CCAAACTGCTGAGCAATAGGG 59.253 52.381 9.07 4.50 38.41 3.53
5631 5836 0.818445 CTGCTGAGCAATAGGGCCAG 60.818 60.000 9.07 0.00 38.41 4.85
5632 5837 1.527844 GCTGAGCAATAGGGCCAGG 60.528 63.158 6.18 0.00 34.61 4.45
5671 5876 1.886542 GACCTTCCAGCAATTTTCGGT 59.113 47.619 0.00 0.00 0.00 4.69
5697 5902 1.257750 ATACACAGACGCCTGGCTGA 61.258 55.000 17.92 0.00 44.60 4.26
5737 5942 1.673665 GGGAGAGCAAGCTGGTGTG 60.674 63.158 0.00 0.00 0.00 3.82
5945 6152 5.071653 AGGTAGCAAAACACCATGGATTTTT 59.928 36.000 21.47 18.75 37.28 1.94
5946 6153 6.268847 AGGTAGCAAAACACCATGGATTTTTA 59.731 34.615 21.47 11.42 37.28 1.52
5948 6155 5.304778 AGCAAAACACCATGGATTTTTACC 58.695 37.500 21.47 15.15 0.00 2.85
5949 6156 5.059833 GCAAAACACCATGGATTTTTACCA 58.940 37.500 21.47 0.00 41.83 3.25
5951 6158 6.876257 GCAAAACACCATGGATTTTTACCATA 59.124 34.615 21.47 0.00 45.00 2.74
5953 6160 7.790782 AAACACCATGGATTTTTACCATACT 57.209 32.000 21.47 0.00 45.00 2.12
5954 6161 6.773976 ACACCATGGATTTTTACCATACTG 57.226 37.500 21.47 2.98 45.00 2.74
5970 6189 5.156355 CCATACTGTGCATGTCAACTTTTC 58.844 41.667 0.00 0.00 0.00 2.29
5981 6200 5.428496 TGTCAACTTTTCTCTTGCATCTG 57.572 39.130 0.00 0.00 0.00 2.90
6024 6243 8.664798 TCACACAAGATATTTACTGTACATTGC 58.335 33.333 0.00 0.00 0.00 3.56
6036 6266 1.200020 GTACATTGCTTGCACCCAGTC 59.800 52.381 0.00 0.00 0.00 3.51
6038 6268 1.607467 ATTGCTTGCACCCAGTCCC 60.607 57.895 0.00 0.00 0.00 4.46
6040 6270 2.116125 GCTTGCACCCAGTCCCTT 59.884 61.111 0.00 0.00 0.00 3.95
6041 6271 1.378762 GCTTGCACCCAGTCCCTTA 59.621 57.895 0.00 0.00 0.00 2.69
6045 6275 1.595311 TGCACCCAGTCCCTTATGAT 58.405 50.000 0.00 0.00 0.00 2.45
6066 6296 2.607499 TGAATTGGGTTGAACATGGCT 58.393 42.857 0.00 0.00 0.00 4.75
6093 6325 7.056635 TGAGGATTTTTGTAGGATCTGGAATC 58.943 38.462 0.00 0.00 0.00 2.52
6127 6359 1.787847 GCCTTGATTGGTCGACGTG 59.212 57.895 9.92 0.00 0.00 4.49
6132 6364 3.507786 CTTGATTGGTCGACGTGTATGA 58.492 45.455 9.92 0.00 0.00 2.15
6147 6379 6.354130 ACGTGTATGATTGTAGGCCTATTTT 58.646 36.000 17.38 3.20 0.00 1.82
6148 6380 6.826741 ACGTGTATGATTGTAGGCCTATTTTT 59.173 34.615 17.38 1.21 0.00 1.94
6149 6381 7.132213 CGTGTATGATTGTAGGCCTATTTTTG 58.868 38.462 17.38 0.00 0.00 2.44
6150 6382 6.918022 GTGTATGATTGTAGGCCTATTTTTGC 59.082 38.462 17.38 1.93 0.00 3.68
6159 6391 3.534554 GGCCTATTTTTGCCTTGATTGG 58.465 45.455 0.00 0.00 44.46 3.16
6160 6392 3.055167 GGCCTATTTTTGCCTTGATTGGT 60.055 43.478 0.00 0.00 44.46 3.67
6161 6393 4.183865 GCCTATTTTTGCCTTGATTGGTC 58.816 43.478 0.00 0.00 0.00 4.02
6162 6394 4.423732 CCTATTTTTGCCTTGATTGGTCG 58.576 43.478 0.00 0.00 0.00 4.79
6163 6395 4.157656 CCTATTTTTGCCTTGATTGGTCGA 59.842 41.667 0.00 0.00 0.00 4.20
6164 6396 3.363341 TTTTTGCCTTGATTGGTCGAC 57.637 42.857 7.13 7.13 0.00 4.20
6165 6397 0.871722 TTTGCCTTGATTGGTCGACG 59.128 50.000 9.92 0.00 0.00 5.12
6166 6398 0.250124 TTGCCTTGATTGGTCGACGT 60.250 50.000 9.92 0.00 0.00 4.34
6167 6399 0.948623 TGCCTTGATTGGTCGACGTG 60.949 55.000 9.92 0.00 0.00 4.49
6168 6400 0.949105 GCCTTGATTGGTCGACGTGT 60.949 55.000 9.92 0.00 0.00 4.49
6169 6401 1.670674 GCCTTGATTGGTCGACGTGTA 60.671 52.381 9.92 0.00 0.00 2.90
6170 6402 2.888594 CCTTGATTGGTCGACGTGTAT 58.111 47.619 9.92 0.00 0.00 2.29
6171 6403 2.603110 CCTTGATTGGTCGACGTGTATG 59.397 50.000 9.92 0.00 0.00 2.39
6172 6404 3.507786 CTTGATTGGTCGACGTGTATGA 58.492 45.455 9.92 0.00 0.00 2.15
6173 6405 3.793797 TGATTGGTCGACGTGTATGAT 57.206 42.857 9.92 0.00 0.00 2.45
6174 6406 4.118093 TGATTGGTCGACGTGTATGATT 57.882 40.909 9.92 0.00 0.00 2.57
6175 6407 3.862845 TGATTGGTCGACGTGTATGATTG 59.137 43.478 9.92 0.00 0.00 2.67
6176 6408 3.306917 TTGGTCGACGTGTATGATTGT 57.693 42.857 9.92 0.00 0.00 2.71
6177 6409 4.437772 TTGGTCGACGTGTATGATTGTA 57.562 40.909 9.92 0.00 0.00 2.41
6178 6410 4.023739 TGGTCGACGTGTATGATTGTAG 57.976 45.455 9.92 0.00 0.00 2.74
6179 6411 3.181494 TGGTCGACGTGTATGATTGTAGG 60.181 47.826 9.92 0.00 0.00 3.18
6180 6412 2.787680 GTCGACGTGTATGATTGTAGGC 59.212 50.000 0.00 0.00 0.00 3.93
6181 6413 2.124903 CGACGTGTATGATTGTAGGCC 58.875 52.381 0.00 0.00 0.00 5.19
6182 6414 2.223735 CGACGTGTATGATTGTAGGCCT 60.224 50.000 11.78 11.78 0.00 5.19
6183 6415 3.004002 CGACGTGTATGATTGTAGGCCTA 59.996 47.826 8.91 8.91 0.00 3.93
6184 6416 4.321008 CGACGTGTATGATTGTAGGCCTAT 60.321 45.833 17.38 0.00 0.00 2.57
6185 6417 5.539048 GACGTGTATGATTGTAGGCCTATT 58.461 41.667 17.38 4.00 0.00 1.73
6186 6418 5.925509 ACGTGTATGATTGTAGGCCTATTT 58.074 37.500 17.38 3.60 0.00 1.40
6210 6442 8.741101 TTTTTGTTTCACAATCATATCGGAAG 57.259 30.769 0.00 0.00 38.00 3.46
6216 6448 9.046296 GTTTCACAATCATATCGGAAGTTCTAT 57.954 33.333 2.25 0.05 0.00 1.98
6243 6475 6.293081 GCGTGAATGTGTAGCTGATGATATTT 60.293 38.462 0.00 0.00 0.00 1.40
6244 6476 7.067728 CGTGAATGTGTAGCTGATGATATTTG 58.932 38.462 0.00 0.00 0.00 2.32
6245 6477 7.254556 CGTGAATGTGTAGCTGATGATATTTGT 60.255 37.037 0.00 0.00 0.00 2.83
6246 6478 9.045223 GTGAATGTGTAGCTGATGATATTTGTA 57.955 33.333 0.00 0.00 0.00 2.41
6247 6479 9.612066 TGAATGTGTAGCTGATGATATTTGTAA 57.388 29.630 0.00 0.00 0.00 2.41
6249 6481 9.836864 AATGTGTAGCTGATGATATTTGTAAGA 57.163 29.630 0.00 0.00 0.00 2.10
6250 6482 8.648557 TGTGTAGCTGATGATATTTGTAAGAC 57.351 34.615 0.00 0.00 0.00 3.01
6251 6483 8.257306 TGTGTAGCTGATGATATTTGTAAGACA 58.743 33.333 0.00 0.00 0.00 3.41
6252 6484 8.543774 GTGTAGCTGATGATATTTGTAAGACAC 58.456 37.037 0.00 0.00 0.00 3.67
6253 6485 8.478066 TGTAGCTGATGATATTTGTAAGACACT 58.522 33.333 0.00 0.00 0.00 3.55
6254 6486 9.319143 GTAGCTGATGATATTTGTAAGACACTT 57.681 33.333 0.00 0.00 0.00 3.16
6265 6497 6.548441 TTGTAAGACACTTATTTTGGGACG 57.452 37.500 0.00 0.00 0.00 4.79
6266 6498 5.856156 TGTAAGACACTTATTTTGGGACGA 58.144 37.500 0.00 0.00 0.00 4.20
6267 6499 6.289834 TGTAAGACACTTATTTTGGGACGAA 58.710 36.000 0.00 0.00 0.00 3.85
6268 6500 5.941948 AAGACACTTATTTTGGGACGAAG 57.058 39.130 0.00 0.00 0.00 3.79
6269 6501 4.324267 AGACACTTATTTTGGGACGAAGG 58.676 43.478 0.00 0.00 0.00 3.46
6270 6502 3.418047 ACACTTATTTTGGGACGAAGGG 58.582 45.455 0.00 0.00 0.00 3.95
6271 6503 3.073356 ACACTTATTTTGGGACGAAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
6272 6504 3.689649 CACTTATTTTGGGACGAAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
6273 6505 3.329814 ACTTATTTTGGGACGAAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
6274 6506 4.533311 ACTTATTTTGGGACGAAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
6275 6507 2.845363 TTTTGGGACGAAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
6276 6508 2.019807 TTTGGGACGAAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
6368 6600 7.370383 TGTTATTCTCTTTTGATCAAACCAGC 58.630 34.615 20.35 6.74 0.00 4.85
6418 6650 7.946655 ATAACTTTTAAGAGCTTTTGGTTGC 57.053 32.000 0.00 0.00 0.00 4.17
6419 6651 4.693283 ACTTTTAAGAGCTTTTGGTTGCC 58.307 39.130 0.00 0.00 0.00 4.52
6420 6652 3.744238 TTTAAGAGCTTTTGGTTGCCC 57.256 42.857 0.00 0.00 0.00 5.36
6421 6653 2.675658 TAAGAGCTTTTGGTTGCCCT 57.324 45.000 0.00 0.00 0.00 5.19
6422 6654 2.675658 AAGAGCTTTTGGTTGCCCTA 57.324 45.000 0.00 0.00 0.00 3.53
6423 6655 2.907458 AGAGCTTTTGGTTGCCCTAT 57.093 45.000 0.00 0.00 0.00 2.57
6424 6656 3.175438 AGAGCTTTTGGTTGCCCTATT 57.825 42.857 0.00 0.00 0.00 1.73
6425 6657 2.827921 AGAGCTTTTGGTTGCCCTATTG 59.172 45.455 0.00 0.00 0.00 1.90
6426 6658 2.562738 GAGCTTTTGGTTGCCCTATTGT 59.437 45.455 0.00 0.00 0.00 2.71
6427 6659 2.972021 AGCTTTTGGTTGCCCTATTGTT 59.028 40.909 0.00 0.00 0.00 2.83
6428 6660 3.390967 AGCTTTTGGTTGCCCTATTGTTT 59.609 39.130 0.00 0.00 0.00 2.83
6429 6661 4.133820 GCTTTTGGTTGCCCTATTGTTTT 58.866 39.130 0.00 0.00 0.00 2.43
6430 6662 4.578516 GCTTTTGGTTGCCCTATTGTTTTT 59.421 37.500 0.00 0.00 0.00 1.94
6431 6663 5.505489 GCTTTTGGTTGCCCTATTGTTTTTG 60.505 40.000 0.00 0.00 0.00 2.44
6432 6664 4.762289 TTGGTTGCCCTATTGTTTTTGT 57.238 36.364 0.00 0.00 0.00 2.83
6433 6665 4.762289 TGGTTGCCCTATTGTTTTTGTT 57.238 36.364 0.00 0.00 0.00 2.83
6434 6666 4.698575 TGGTTGCCCTATTGTTTTTGTTC 58.301 39.130 0.00 0.00 0.00 3.18
6435 6667 4.062293 GGTTGCCCTATTGTTTTTGTTCC 58.938 43.478 0.00 0.00 0.00 3.62
6436 6668 4.202315 GGTTGCCCTATTGTTTTTGTTCCT 60.202 41.667 0.00 0.00 0.00 3.36
6437 6669 5.011227 GGTTGCCCTATTGTTTTTGTTCCTA 59.989 40.000 0.00 0.00 0.00 2.94
6438 6670 6.463190 GGTTGCCCTATTGTTTTTGTTCCTAA 60.463 38.462 0.00 0.00 0.00 2.69
6439 6671 6.732896 TGCCCTATTGTTTTTGTTCCTAAA 57.267 33.333 0.00 0.00 0.00 1.85
6440 6672 6.754193 TGCCCTATTGTTTTTGTTCCTAAAG 58.246 36.000 0.00 0.00 0.00 1.85
6441 6673 6.551601 TGCCCTATTGTTTTTGTTCCTAAAGA 59.448 34.615 0.00 0.00 0.00 2.52
6442 6674 7.070074 TGCCCTATTGTTTTTGTTCCTAAAGAA 59.930 33.333 0.00 0.00 0.00 2.52
6443 6675 7.929245 GCCCTATTGTTTTTGTTCCTAAAGAAA 59.071 33.333 0.00 0.00 35.85 2.52
6444 6676 9.256477 CCCTATTGTTTTTGTTCCTAAAGAAAC 57.744 33.333 0.00 0.00 35.85 2.78
6484 6716 8.659527 TCCATTATTCAATATAGAGTCTTGGCA 58.340 33.333 0.00 0.00 0.00 4.92
6495 6727 3.149196 GAGTCTTGGCATCTGTTTGGAA 58.851 45.455 0.00 0.00 0.00 3.53
6558 6790 6.405278 AACCTTTGGTTGGATGTTTAAGAG 57.595 37.500 0.71 0.00 45.07 2.85
6559 6791 4.832823 ACCTTTGGTTGGATGTTTAAGAGG 59.167 41.667 0.00 0.00 27.29 3.69
6560 6792 5.076873 CCTTTGGTTGGATGTTTAAGAGGA 58.923 41.667 0.00 0.00 0.00 3.71
6561 6793 5.716703 CCTTTGGTTGGATGTTTAAGAGGAT 59.283 40.000 0.00 0.00 0.00 3.24
6562 6794 6.889722 CCTTTGGTTGGATGTTTAAGAGGATA 59.110 38.462 0.00 0.00 0.00 2.59
6563 6795 7.067494 CCTTTGGTTGGATGTTTAAGAGGATAG 59.933 40.741 0.00 0.00 0.00 2.08
6564 6796 6.636454 TGGTTGGATGTTTAAGAGGATAGT 57.364 37.500 0.00 0.00 0.00 2.12
6565 6797 6.414732 TGGTTGGATGTTTAAGAGGATAGTG 58.585 40.000 0.00 0.00 0.00 2.74
6566 6798 5.823045 GGTTGGATGTTTAAGAGGATAGTGG 59.177 44.000 0.00 0.00 0.00 4.00
6567 6799 6.415573 GTTGGATGTTTAAGAGGATAGTGGT 58.584 40.000 0.00 0.00 0.00 4.16
6568 6800 7.365295 GGTTGGATGTTTAAGAGGATAGTGGTA 60.365 40.741 0.00 0.00 0.00 3.25
6569 6801 7.931015 TGGATGTTTAAGAGGATAGTGGTAT 57.069 36.000 0.00 0.00 0.00 2.73
6570 6802 7.963532 TGGATGTTTAAGAGGATAGTGGTATC 58.036 38.462 0.00 0.00 35.19 2.24
6581 6813 2.848678 AGTGGTATCCTAGCTCACCA 57.151 50.000 0.00 4.05 38.72 4.17
6582 6814 2.672098 AGTGGTATCCTAGCTCACCAG 58.328 52.381 7.57 0.00 41.58 4.00
6583 6815 2.023888 AGTGGTATCCTAGCTCACCAGT 60.024 50.000 7.57 8.11 41.58 4.00
6584 6816 3.204606 AGTGGTATCCTAGCTCACCAGTA 59.795 47.826 11.46 0.00 41.78 2.74
6585 6817 4.140900 AGTGGTATCCTAGCTCACCAGTAT 60.141 45.833 11.46 0.06 41.78 2.12
6586 6818 4.589374 GTGGTATCCTAGCTCACCAGTATT 59.411 45.833 7.57 0.00 41.58 1.89
6587 6819 5.070580 GTGGTATCCTAGCTCACCAGTATTT 59.929 44.000 7.57 0.00 41.58 1.40
6588 6820 6.267014 GTGGTATCCTAGCTCACCAGTATTTA 59.733 42.308 7.57 0.00 41.58 1.40
6589 6821 7.016914 TGGTATCCTAGCTCACCAGTATTTAT 58.983 38.462 0.00 0.00 36.15 1.40
6590 6822 7.512746 TGGTATCCTAGCTCACCAGTATTTATT 59.487 37.037 0.00 0.00 36.15 1.40
6591 6823 8.035984 GGTATCCTAGCTCACCAGTATTTATTC 58.964 40.741 0.00 0.00 0.00 1.75
6592 6824 6.420913 TCCTAGCTCACCAGTATTTATTCC 57.579 41.667 0.00 0.00 0.00 3.01
6593 6825 6.143915 TCCTAGCTCACCAGTATTTATTCCT 58.856 40.000 0.00 0.00 0.00 3.36
6594 6826 6.615726 TCCTAGCTCACCAGTATTTATTCCTT 59.384 38.462 0.00 0.00 0.00 3.36
6595 6827 6.708054 CCTAGCTCACCAGTATTTATTCCTTG 59.292 42.308 0.00 0.00 0.00 3.61
6596 6828 6.313519 AGCTCACCAGTATTTATTCCTTGA 57.686 37.500 0.00 0.00 0.00 3.02
6597 6829 6.116126 AGCTCACCAGTATTTATTCCTTGAC 58.884 40.000 0.00 0.00 0.00 3.18
6598 6830 6.069963 AGCTCACCAGTATTTATTCCTTGACT 60.070 38.462 0.00 0.00 0.00 3.41
6599 6831 6.599638 GCTCACCAGTATTTATTCCTTGACTT 59.400 38.462 0.00 0.00 0.00 3.01
6600 6832 7.414540 GCTCACCAGTATTTATTCCTTGACTTG 60.415 40.741 0.00 0.00 0.00 3.16
6601 6833 7.685481 TCACCAGTATTTATTCCTTGACTTGA 58.315 34.615 0.00 0.00 0.00 3.02
6602 6834 7.606456 TCACCAGTATTTATTCCTTGACTTGAC 59.394 37.037 0.00 0.00 0.00 3.18
6603 6835 7.390440 CACCAGTATTTATTCCTTGACTTGACA 59.610 37.037 0.00 0.00 0.00 3.58
6604 6836 7.390718 ACCAGTATTTATTCCTTGACTTGACAC 59.609 37.037 0.00 0.00 0.00 3.67
6605 6837 7.607991 CCAGTATTTATTCCTTGACTTGACACT 59.392 37.037 0.00 0.00 0.00 3.55
6606 6838 8.446273 CAGTATTTATTCCTTGACTTGACACTG 58.554 37.037 0.00 0.00 0.00 3.66
6607 6839 8.375506 AGTATTTATTCCTTGACTTGACACTGA 58.624 33.333 0.00 0.00 0.00 3.41
6608 6840 9.167311 GTATTTATTCCTTGACTTGACACTGAT 57.833 33.333 0.00 0.00 0.00 2.90
6609 6841 7.439157 TTTATTCCTTGACTTGACACTGATG 57.561 36.000 0.00 0.00 0.00 3.07
6610 6842 2.771089 TCCTTGACTTGACACTGATGC 58.229 47.619 0.00 0.00 0.00 3.91
6611 6843 2.369860 TCCTTGACTTGACACTGATGCT 59.630 45.455 0.00 0.00 0.00 3.79
6612 6844 2.740981 CCTTGACTTGACACTGATGCTC 59.259 50.000 0.00 0.00 0.00 4.26
6613 6845 3.396560 CTTGACTTGACACTGATGCTCA 58.603 45.455 0.00 0.00 0.00 4.26
6614 6846 3.690475 TGACTTGACACTGATGCTCAT 57.310 42.857 0.00 0.00 0.00 2.90
6615 6847 4.806640 TGACTTGACACTGATGCTCATA 57.193 40.909 0.00 0.00 0.00 2.15
6616 6848 5.349061 TGACTTGACACTGATGCTCATAT 57.651 39.130 0.00 0.00 0.00 1.78
6617 6849 5.737860 TGACTTGACACTGATGCTCATATT 58.262 37.500 0.00 0.00 0.00 1.28
6618 6850 6.175471 TGACTTGACACTGATGCTCATATTT 58.825 36.000 0.00 0.00 0.00 1.40
6619 6851 6.656270 TGACTTGACACTGATGCTCATATTTT 59.344 34.615 0.00 0.00 0.00 1.82
6620 6852 7.175467 TGACTTGACACTGATGCTCATATTTTT 59.825 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.741603 TTGGGACTAACCTATTAATTTAGTGC 57.258 34.615 16.05 16.05 41.14 4.40
6 7 8.914011 GCATCTTTGGGACTAACCTATTAATTT 58.086 33.333 0.00 0.00 38.98 1.82
7 8 8.282256 AGCATCTTTGGGACTAACCTATTAATT 58.718 33.333 0.00 0.00 38.98 1.40
8 9 7.816411 AGCATCTTTGGGACTAACCTATTAAT 58.184 34.615 0.00 0.00 38.98 1.40
9 10 7.208064 AGCATCTTTGGGACTAACCTATTAA 57.792 36.000 0.00 0.00 38.98 1.40
10 11 6.824958 AGCATCTTTGGGACTAACCTATTA 57.175 37.500 0.00 0.00 38.98 0.98
11 12 5.717119 AGCATCTTTGGGACTAACCTATT 57.283 39.130 0.00 0.00 38.98 1.73
12 13 8.506196 TTATAGCATCTTTGGGACTAACCTAT 57.494 34.615 0.00 0.00 38.98 2.57
13 14 7.924358 TTATAGCATCTTTGGGACTAACCTA 57.076 36.000 0.00 0.00 38.98 3.08
14 15 6.824958 TTATAGCATCTTTGGGACTAACCT 57.175 37.500 0.00 0.00 38.98 3.50
15 16 7.875327 TTTTATAGCATCTTTGGGACTAACC 57.125 36.000 0.00 0.00 38.08 2.85
64 65 9.826574 ATGTATAATTTTTGATTGCTTCATGCT 57.173 25.926 0.00 0.00 43.37 3.79
89 90 4.022242 CCCCTTCATACGTCTCGAATGTAT 60.022 45.833 0.00 6.63 40.10 2.29
90 91 3.317149 CCCCTTCATACGTCTCGAATGTA 59.683 47.826 0.00 0.00 33.91 2.29
91 92 2.100916 CCCCTTCATACGTCTCGAATGT 59.899 50.000 0.00 0.00 0.00 2.71
92 93 2.100916 ACCCCTTCATACGTCTCGAATG 59.899 50.000 0.00 0.00 0.00 2.67
93 94 2.361438 GACCCCTTCATACGTCTCGAAT 59.639 50.000 0.00 0.00 0.00 3.34
94 95 1.747355 GACCCCTTCATACGTCTCGAA 59.253 52.381 0.00 0.00 0.00 3.71
95 96 1.340308 TGACCCCTTCATACGTCTCGA 60.340 52.381 0.00 0.00 0.00 4.04
96 97 1.100510 TGACCCCTTCATACGTCTCG 58.899 55.000 0.00 0.00 0.00 4.04
225 226 7.880160 AAAATGGAACGAGATTTCATGGATA 57.120 32.000 0.00 0.00 36.55 2.59
228 229 5.062558 GCAAAAATGGAACGAGATTTCATGG 59.937 40.000 0.00 0.00 36.55 3.66
239 240 2.420628 TGAGCTGCAAAAATGGAACG 57.579 45.000 1.02 0.00 0.00 3.95
253 254 9.372369 GTTTCTTGTACTTATGTAGAATGAGCT 57.628 33.333 0.00 0.00 32.60 4.09
255 256 9.877178 AGGTTTCTTGTACTTATGTAGAATGAG 57.123 33.333 0.00 0.00 32.60 2.90
303 304 8.073768 ACGTCCATTTTTAGTTCATGTAAGTTG 58.926 33.333 0.00 0.00 0.00 3.16
304 305 8.161699 ACGTCCATTTTTAGTTCATGTAAGTT 57.838 30.769 0.00 0.00 0.00 2.66
305 306 7.094933 GGACGTCCATTTTTAGTTCATGTAAGT 60.095 37.037 29.75 0.00 35.64 2.24
306 307 7.094975 TGGACGTCCATTTTTAGTTCATGTAAG 60.095 37.037 33.23 0.00 42.01 2.34
309 310 5.067273 TGGACGTCCATTTTTAGTTCATGT 58.933 37.500 33.23 0.00 42.01 3.21
326 327 3.238108 GTCTCTTGACATCATGGACGT 57.762 47.619 0.00 0.00 42.48 4.34
345 346 6.148811 CGGCTTATTTGGATACCGATAATTGT 59.851 38.462 0.00 0.00 43.19 2.71
351 352 2.224426 TGCGGCTTATTTGGATACCGAT 60.224 45.455 0.00 0.00 43.19 4.18
395 396 1.371267 GCGGCGAAGGTGTTTTTCC 60.371 57.895 12.98 0.00 0.00 3.13
459 461 5.361285 ACCATAGAAGAATACAACGAGCTCT 59.639 40.000 12.85 0.00 0.00 4.09
461 463 5.599999 ACCATAGAAGAATACAACGAGCT 57.400 39.130 0.00 0.00 0.00 4.09
506 518 5.715439 TGTGGGATAGGATTTGAATCACT 57.285 39.130 6.11 3.80 37.15 3.41
508 520 5.825532 TGTTGTGGGATAGGATTTGAATCA 58.174 37.500 6.11 0.00 37.15 2.57
517 529 5.570205 TTGTAGTTTGTTGTGGGATAGGA 57.430 39.130 0.00 0.00 0.00 2.94
552 564 9.720769 TGTAGATCGAGTTATATATGTGACTGA 57.279 33.333 1.46 1.48 0.00 3.41
563 575 6.776116 ACCATTCCACTGTAGATCGAGTTATA 59.224 38.462 0.00 0.00 0.00 0.98
597 610 3.685265 CGAGATTGTCATTGATTCCCCCA 60.685 47.826 0.00 0.00 0.00 4.96
602 615 5.784750 TGTGTCGAGATTGTCATTGATTC 57.215 39.130 0.00 0.00 0.00 2.52
611 624 5.460091 CGAACATCATATGTGTCGAGATTGT 59.540 40.000 1.90 0.00 44.07 2.71
636 649 4.094090 ACTACGAGAAGAAGGTTTAGCG 57.906 45.455 0.00 0.00 0.00 4.26
659 672 0.315706 CAGCGGCGTACGTCTACTAC 60.316 60.000 18.90 2.11 46.52 2.73
660 673 0.460109 TCAGCGGCGTACGTCTACTA 60.460 55.000 18.90 0.00 46.52 1.82
661 674 1.703438 CTCAGCGGCGTACGTCTACT 61.703 60.000 18.90 12.23 46.52 2.57
665 678 3.104602 TAGCTCAGCGGCGTACGTC 62.105 63.158 17.90 14.42 46.52 4.34
669 682 0.179065 TCTAGTAGCTCAGCGGCGTA 60.179 55.000 9.37 0.00 37.29 4.42
676 689 6.078202 TCGGAATTGATTCTAGTAGCTCAG 57.922 41.667 0.00 0.00 37.00 3.35
685 698 3.711704 AGAGGCCTTCGGAATTGATTCTA 59.288 43.478 6.77 0.00 37.00 2.10
686 699 2.507471 AGAGGCCTTCGGAATTGATTCT 59.493 45.455 6.77 0.00 37.00 2.40
687 700 2.924421 AGAGGCCTTCGGAATTGATTC 58.076 47.619 6.77 0.00 36.08 2.52
697 710 2.159653 CGTTGAATCAAAGAGGCCTTCG 60.160 50.000 6.77 0.00 0.00 3.79
715 728 7.117667 GCCATTCCTTTTTCATGAAATTACGTT 59.882 33.333 21.10 3.91 0.00 3.99
719 732 7.256494 AGGCCATTCCTTTTTCATGAAATTA 57.744 32.000 21.10 11.60 44.75 1.40
746 760 0.745845 CTCTGCTTCATGTTCGGGGG 60.746 60.000 0.00 0.00 0.00 5.40
826 882 3.952967 CTCAACTCCTAGTACTACCACCC 59.047 52.174 0.00 0.00 0.00 4.61
877 943 2.675423 GGGTTTGGTCTTCGGGGC 60.675 66.667 0.00 0.00 0.00 5.80
1649 1736 4.481112 CAATGTCGGCAAGGCGGC 62.481 66.667 13.91 13.91 0.00 6.53
1683 1770 0.169009 GCAATTCCACCTGCTCGTTC 59.831 55.000 0.00 0.00 35.62 3.95
1697 1784 1.988107 TGAAGACCCTGAGAGGCAATT 59.012 47.619 0.00 0.00 32.73 2.32
1920 2042 2.948315 TGTGCACACAGTCAAATTGCTA 59.052 40.909 17.42 0.00 36.21 3.49
1932 2054 0.464554 TCGGTTTCCATGTGCACACA 60.465 50.000 24.37 6.25 46.44 3.72
1970 2124 4.978083 ACAGTGTACAGGTAGGTAATCG 57.022 45.455 0.00 0.00 0.00 3.34
1973 2127 6.183360 GCATGATACAGTGTACAGGTAGGTAA 60.183 42.308 4.80 1.02 0.00 2.85
2203 2402 2.282180 GCAAGGAACCCCAAGCGA 60.282 61.111 0.00 0.00 33.88 4.93
2297 2496 5.700832 GGCACGTCCTCATCATAATCAATAA 59.299 40.000 0.00 0.00 0.00 1.40
2694 2893 8.951243 AGATTAGCTAGGTCTTCAAAAACATTC 58.049 33.333 0.00 0.00 0.00 2.67
2865 3064 8.189119 ACTGCCAAAAAGGAAAATATTCACTA 57.811 30.769 0.00 0.00 41.22 2.74
2898 3097 1.688735 TCAGGATCATTACTGCCCTCG 59.311 52.381 0.00 0.00 34.76 4.63
3174 3373 7.723616 TCCAAGTTCATATCCTCAAAGTCAAAA 59.276 33.333 0.00 0.00 0.00 2.44
3432 3631 4.347876 AGATCATTCCCACCATTGATACGA 59.652 41.667 0.00 0.00 0.00 3.43
3571 3770 3.194005 TGTCCTCTTTGACTTCCACAC 57.806 47.619 0.00 0.00 36.21 3.82
3804 4003 5.945155 TTCAACAAAGTGGTGAACTTACAC 58.055 37.500 4.62 0.00 46.02 2.90
3830 4029 3.878778 ACAGGGTCATCAGCATAAGAAC 58.121 45.455 0.00 0.00 0.00 3.01
3939 4138 6.127338 TGCAATCTACTATATTCCTCCATCCG 60.127 42.308 0.00 0.00 0.00 4.18
3967 4166 4.265073 AGGCCTATTTTGTGCAGTCTTAG 58.735 43.478 1.29 0.00 0.00 2.18
3973 4172 3.119352 GGAAGAAGGCCTATTTTGTGCAG 60.119 47.826 5.16 0.00 0.00 4.41
3981 4180 0.837940 GACCCGGAAGAAGGCCTATT 59.162 55.000 5.16 3.73 0.00 1.73
4014 4213 1.139734 CTCCTGATCGTCACCCGTG 59.860 63.158 0.00 0.00 37.94 4.94
4017 4216 1.433879 CGACTCCTGATCGTCACCC 59.566 63.158 0.42 0.00 34.84 4.61
4078 4280 1.458639 AAGGCTTGAGGTGCAACTGC 61.459 55.000 10.28 6.48 42.50 4.40
4079 4281 1.537202 GTAAGGCTTGAGGTGCAACTG 59.463 52.381 10.28 0.00 36.74 3.16
4080 4282 1.545651 GGTAAGGCTTGAGGTGCAACT 60.546 52.381 2.34 2.34 36.74 3.16
4081 4283 0.881796 GGTAAGGCTTGAGGTGCAAC 59.118 55.000 10.69 0.00 31.96 4.17
4082 4284 0.476338 TGGTAAGGCTTGAGGTGCAA 59.524 50.000 10.69 0.00 34.73 4.08
4124 4326 1.442886 AAACCTCCCCATCAGCCCAA 61.443 55.000 0.00 0.00 0.00 4.12
4161 4363 3.370633 GGGACCTTGGTTCTTCAGTATCC 60.371 52.174 0.00 0.00 0.00 2.59
4165 4367 1.421646 CTGGGACCTTGGTTCTTCAGT 59.578 52.381 0.00 0.00 0.00 3.41
4473 4675 0.037303 AAGGCATCACTGTGGACTGG 59.963 55.000 8.11 0.00 0.00 4.00
4554 4756 8.474025 AGTAAGTCATCTACCAGATTCTCTTTG 58.526 37.037 0.00 0.00 31.32 2.77
4557 4759 7.350382 TCAGTAAGTCATCTACCAGATTCTCT 58.650 38.462 0.00 0.00 31.32 3.10
4710 4912 7.167801 GTGACGCAGAGTAAGGAAATTATAGTC 59.832 40.741 0.00 0.00 0.00 2.59
4797 4999 1.152247 AGGTGAGAGGTGTGCTCCA 60.152 57.895 0.00 0.00 0.00 3.86
4828 5030 1.005215 CCTTGAGGCCTCCACAGAAAT 59.995 52.381 29.95 0.00 0.00 2.17
4968 5170 3.387962 TCCTTCCAATATCCTGTCTGCT 58.612 45.455 0.00 0.00 0.00 4.24
5031 5233 1.593787 CCTCTGATCCGTGCACACT 59.406 57.895 18.64 0.00 0.00 3.55
5476 5681 0.896940 AGCCATGTTGCTTCCCACAG 60.897 55.000 0.00 0.00 38.85 3.66
5518 5723 1.518903 AAAACCTCTGGCTGAAGCGC 61.519 55.000 0.00 0.00 43.26 5.92
5584 5789 0.539669 TCCTGTGCTGAACTCTCCGA 60.540 55.000 0.00 0.00 0.00 4.55
5616 5821 2.597340 GCCTGGCCCTATTGCTCA 59.403 61.111 7.66 0.00 0.00 4.26
5627 5832 3.512516 GATGTTCAGCGGCCTGGC 61.513 66.667 11.05 11.05 39.61 4.85
5631 5836 1.643832 GATTCGATGTTCAGCGGCC 59.356 57.895 10.38 0.00 0.00 6.13
5632 5837 1.643832 GGATTCGATGTTCAGCGGC 59.356 57.895 10.38 0.00 0.00 6.53
5634 5839 2.957871 TCGGATTCGATGTTCAGCG 58.042 52.632 4.04 4.04 40.88 5.18
5671 5876 0.744874 GGCGTCTGTGTATAGCTCCA 59.255 55.000 0.00 0.00 0.00 3.86
5697 5902 1.115467 CCTAATGTCCACCGAGAGCT 58.885 55.000 0.00 0.00 0.00 4.09
5800 6005 5.105146 AGGTGTTGCAACAATAAAACCTCAA 60.105 36.000 32.61 3.47 41.21 3.02
5945 6152 4.551702 AGTTGACATGCACAGTATGGTA 57.448 40.909 0.00 0.00 43.62 3.25
5946 6153 3.423539 AGTTGACATGCACAGTATGGT 57.576 42.857 0.00 0.00 43.62 3.55
5948 6155 6.005583 AGAAAAGTTGACATGCACAGTATG 57.994 37.500 0.00 0.00 46.00 2.39
5949 6156 6.000219 AGAGAAAAGTTGACATGCACAGTAT 59.000 36.000 0.00 0.00 0.00 2.12
5950 6157 5.368145 AGAGAAAAGTTGACATGCACAGTA 58.632 37.500 0.00 0.00 0.00 2.74
5951 6158 4.202441 AGAGAAAAGTTGACATGCACAGT 58.798 39.130 0.00 0.00 0.00 3.55
5953 6160 4.734402 GCAAGAGAAAAGTTGACATGCACA 60.734 41.667 0.00 0.00 0.00 4.57
5954 6161 3.732721 GCAAGAGAAAAGTTGACATGCAC 59.267 43.478 0.00 0.00 0.00 4.57
5970 6189 6.093219 ACAGCTTGTAATAACAGATGCAAGAG 59.907 38.462 7.61 2.62 36.83 2.85
6023 6242 0.034089 ATAAGGGACTGGGTGCAAGC 60.034 55.000 0.00 0.00 40.86 4.01
6024 6243 1.281867 TCATAAGGGACTGGGTGCAAG 59.718 52.381 0.00 0.00 40.86 4.01
6036 6266 6.070881 TGTTCAACCCAATTCAATCATAAGGG 60.071 38.462 0.00 0.00 40.66 3.95
6038 6268 7.493320 CCATGTTCAACCCAATTCAATCATAAG 59.507 37.037 0.00 0.00 0.00 1.73
6040 6270 6.629963 GCCATGTTCAACCCAATTCAATCATA 60.630 38.462 0.00 0.00 0.00 2.15
6041 6271 5.736813 CCATGTTCAACCCAATTCAATCAT 58.263 37.500 0.00 0.00 0.00 2.45
6045 6275 2.971330 AGCCATGTTCAACCCAATTCAA 59.029 40.909 0.00 0.00 0.00 2.69
6066 6296 6.789268 TCCAGATCCTACAAAAATCCTCAAA 58.211 36.000 0.00 0.00 0.00 2.69
6093 6325 1.834188 AGGCGAAAAGGTTACCATGG 58.166 50.000 11.19 11.19 0.00 3.66
6127 6359 6.447162 GGCAAAAATAGGCCTACAATCATAC 58.553 40.000 16.61 0.74 46.74 2.39
6147 6379 0.250124 ACGTCGACCAATCAAGGCAA 60.250 50.000 10.58 0.00 0.00 4.52
6148 6380 0.948623 CACGTCGACCAATCAAGGCA 60.949 55.000 10.58 0.00 0.00 4.75
6149 6381 0.949105 ACACGTCGACCAATCAAGGC 60.949 55.000 10.58 0.00 0.00 4.35
6150 6382 2.357327 TACACGTCGACCAATCAAGG 57.643 50.000 10.58 0.00 0.00 3.61
6151 6383 3.507786 TCATACACGTCGACCAATCAAG 58.492 45.455 10.58 0.00 0.00 3.02
6152 6384 3.579335 TCATACACGTCGACCAATCAA 57.421 42.857 10.58 0.00 0.00 2.57
6153 6385 3.793797 ATCATACACGTCGACCAATCA 57.206 42.857 10.58 0.00 0.00 2.57
6154 6386 3.863424 ACAATCATACACGTCGACCAATC 59.137 43.478 10.58 0.00 0.00 2.67
6155 6387 3.857052 ACAATCATACACGTCGACCAAT 58.143 40.909 10.58 0.00 0.00 3.16
6156 6388 3.306917 ACAATCATACACGTCGACCAA 57.693 42.857 10.58 0.00 0.00 3.67
6157 6389 3.181494 CCTACAATCATACACGTCGACCA 60.181 47.826 10.58 0.00 0.00 4.02
6158 6390 3.369385 CCTACAATCATACACGTCGACC 58.631 50.000 10.58 0.00 0.00 4.79
6159 6391 2.787680 GCCTACAATCATACACGTCGAC 59.212 50.000 5.18 5.18 0.00 4.20
6160 6392 2.223641 GGCCTACAATCATACACGTCGA 60.224 50.000 0.00 0.00 0.00 4.20
6161 6393 2.124903 GGCCTACAATCATACACGTCG 58.875 52.381 0.00 0.00 0.00 5.12
6162 6394 3.454371 AGGCCTACAATCATACACGTC 57.546 47.619 1.29 0.00 0.00 4.34
6163 6395 5.546621 AATAGGCCTACAATCATACACGT 57.453 39.130 16.61 0.00 0.00 4.49
6164 6396 6.861065 AAAATAGGCCTACAATCATACACG 57.139 37.500 16.61 0.00 0.00 4.49
6207 6439 3.684788 ACACATTCACGCCATAGAACTTC 59.315 43.478 0.00 0.00 0.00 3.01
6210 6442 3.001330 GCTACACATTCACGCCATAGAAC 59.999 47.826 0.00 0.00 0.00 3.01
6216 6448 0.320050 TCAGCTACACATTCACGCCA 59.680 50.000 0.00 0.00 0.00 5.69
6243 6475 5.856156 TCGTCCCAAAATAAGTGTCTTACA 58.144 37.500 0.00 0.00 0.00 2.41
6244 6476 6.128363 CCTTCGTCCCAAAATAAGTGTCTTAC 60.128 42.308 0.00 0.00 0.00 2.34
6245 6477 5.935789 CCTTCGTCCCAAAATAAGTGTCTTA 59.064 40.000 0.00 0.00 0.00 2.10
6246 6478 4.760204 CCTTCGTCCCAAAATAAGTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
6247 6479 4.324267 CCTTCGTCCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
6248 6480 3.439129 CCCTTCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
6249 6481 3.073356 TCCCTTCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
6250 6482 3.681593 TCCCTTCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
6251 6483 3.329814 ACTCCCTTCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
6252 6484 3.951663 ACTCCCTTCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
6253 6485 4.533311 AGTACTCCCTTCGTCCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
6254 6486 4.098894 AGTACTCCCTTCGTCCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
6255 6487 2.910977 AGTACTCCCTTCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
6256 6488 2.332117 AGTACTCCCTTCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
6257 6489 2.019807 AGTACTCCCTTCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
6258 6490 2.019807 AAGTACTCCCTTCGTCCCAA 57.980 50.000 0.00 0.00 0.00 4.12
6259 6491 2.905415 TAAGTACTCCCTTCGTCCCA 57.095 50.000 0.00 0.00 0.00 4.37
6260 6492 4.405036 AGAAATAAGTACTCCCTTCGTCCC 59.595 45.833 0.00 0.00 0.00 4.46
6261 6493 5.360429 AGAGAAATAAGTACTCCCTTCGTCC 59.640 44.000 0.00 0.00 0.00 4.79
6262 6494 6.453926 AGAGAAATAAGTACTCCCTTCGTC 57.546 41.667 0.00 0.46 0.00 4.20
6263 6495 7.395489 TGTTAGAGAAATAAGTACTCCCTTCGT 59.605 37.037 0.00 0.00 0.00 3.85
6264 6496 7.769220 TGTTAGAGAAATAAGTACTCCCTTCG 58.231 38.462 0.00 0.00 0.00 3.79
6265 6497 9.939802 TTTGTTAGAGAAATAAGTACTCCCTTC 57.060 33.333 0.00 0.00 0.00 3.46
6267 6499 9.892130 CATTTGTTAGAGAAATAAGTACTCCCT 57.108 33.333 0.00 0.00 0.00 4.20
6268 6500 8.613482 GCATTTGTTAGAGAAATAAGTACTCCC 58.387 37.037 0.00 0.00 0.00 4.30
6269 6501 9.384764 AGCATTTGTTAGAGAAATAAGTACTCC 57.615 33.333 0.00 0.00 0.00 3.85
6312 6544 9.880157 CCTGGATCTCAACATAAAAATCATTTT 57.120 29.630 0.00 0.00 41.50 1.82
6313 6545 7.983484 GCCTGGATCTCAACATAAAAATCATTT 59.017 33.333 0.00 0.00 0.00 2.32
6314 6546 7.495055 GCCTGGATCTCAACATAAAAATCATT 58.505 34.615 0.00 0.00 0.00 2.57
6315 6547 6.238842 CGCCTGGATCTCAACATAAAAATCAT 60.239 38.462 0.00 0.00 0.00 2.45
6321 6553 2.288666 GCGCCTGGATCTCAACATAAA 58.711 47.619 0.00 0.00 0.00 1.40
6333 6565 1.486310 AGAGAATAACATGCGCCTGGA 59.514 47.619 17.19 4.89 0.00 3.86
6392 6624 9.639601 GCAACCAAAAGCTCTTAAAAGTTATAT 57.360 29.630 0.00 0.00 0.00 0.86
6393 6625 8.085909 GGCAACCAAAAGCTCTTAAAAGTTATA 58.914 33.333 0.00 0.00 0.00 0.98
6394 6626 6.929049 GGCAACCAAAAGCTCTTAAAAGTTAT 59.071 34.615 0.00 0.00 0.00 1.89
6395 6627 6.277605 GGCAACCAAAAGCTCTTAAAAGTTA 58.722 36.000 0.00 0.00 0.00 2.24
6396 6628 5.116180 GGCAACCAAAAGCTCTTAAAAGTT 58.884 37.500 0.00 0.00 0.00 2.66
6397 6629 4.693283 GGCAACCAAAAGCTCTTAAAAGT 58.307 39.130 0.00 0.00 0.00 2.66
6414 6646 4.956085 AGGAACAAAAACAATAGGGCAAC 58.044 39.130 0.00 0.00 0.00 4.17
6415 6647 6.732896 TTAGGAACAAAAACAATAGGGCAA 57.267 33.333 0.00 0.00 0.00 4.52
6416 6648 6.551601 TCTTTAGGAACAAAAACAATAGGGCA 59.448 34.615 0.00 0.00 0.00 5.36
6417 6649 6.988522 TCTTTAGGAACAAAAACAATAGGGC 58.011 36.000 0.00 0.00 0.00 5.19
6418 6650 9.256477 GTTTCTTTAGGAACAAAAACAATAGGG 57.744 33.333 0.00 0.00 33.13 3.53
6457 6689 9.507329 GCCAAGACTCTATATTGAATAATGGAA 57.493 33.333 10.65 0.00 30.57 3.53
6458 6690 8.659527 TGCCAAGACTCTATATTGAATAATGGA 58.340 33.333 10.65 0.00 30.57 3.41
6459 6691 8.853077 TGCCAAGACTCTATATTGAATAATGG 57.147 34.615 0.00 0.00 30.57 3.16
6462 6694 9.716531 CAGATGCCAAGACTCTATATTGAATAA 57.283 33.333 0.00 0.00 30.57 1.40
6463 6695 8.874156 ACAGATGCCAAGACTCTATATTGAATA 58.126 33.333 0.00 0.00 30.57 1.75
6464 6696 7.743749 ACAGATGCCAAGACTCTATATTGAAT 58.256 34.615 0.00 0.00 30.57 2.57
6465 6697 7.129457 ACAGATGCCAAGACTCTATATTGAA 57.871 36.000 0.00 0.00 30.57 2.69
6466 6698 6.737720 ACAGATGCCAAGACTCTATATTGA 57.262 37.500 0.00 0.00 30.57 2.57
6467 6699 7.255035 CCAAACAGATGCCAAGACTCTATATTG 60.255 40.741 0.00 0.00 0.00 1.90
6468 6700 6.769822 CCAAACAGATGCCAAGACTCTATATT 59.230 38.462 0.00 0.00 0.00 1.28
6469 6701 6.100279 TCCAAACAGATGCCAAGACTCTATAT 59.900 38.462 0.00 0.00 0.00 0.86
6470 6702 5.425217 TCCAAACAGATGCCAAGACTCTATA 59.575 40.000 0.00 0.00 0.00 1.31
6471 6703 4.225942 TCCAAACAGATGCCAAGACTCTAT 59.774 41.667 0.00 0.00 0.00 1.98
6472 6704 3.582647 TCCAAACAGATGCCAAGACTCTA 59.417 43.478 0.00 0.00 0.00 2.43
6473 6705 2.373169 TCCAAACAGATGCCAAGACTCT 59.627 45.455 0.00 0.00 0.00 3.24
6474 6706 2.783135 TCCAAACAGATGCCAAGACTC 58.217 47.619 0.00 0.00 0.00 3.36
6475 6707 2.957402 TCCAAACAGATGCCAAGACT 57.043 45.000 0.00 0.00 0.00 3.24
6476 6708 4.525912 ATTTCCAAACAGATGCCAAGAC 57.474 40.909 0.00 0.00 0.00 3.01
6477 6709 4.588106 TGAATTTCCAAACAGATGCCAAGA 59.412 37.500 0.00 0.00 0.00 3.02
6484 6716 8.037166 GGCTTTAGATTGAATTTCCAAACAGAT 58.963 33.333 0.00 0.00 0.00 2.90
6495 6727 6.594788 ATGTGTGTGGCTTTAGATTGAATT 57.405 33.333 0.00 0.00 0.00 2.17
6536 6768 4.832823 CCTCTTAAACATCCAACCAAAGGT 59.167 41.667 0.00 0.00 37.65 3.50
6537 6769 5.076873 TCCTCTTAAACATCCAACCAAAGG 58.923 41.667 0.00 0.00 0.00 3.11
6538 6770 6.840780 ATCCTCTTAAACATCCAACCAAAG 57.159 37.500 0.00 0.00 0.00 2.77
6539 6771 7.393234 CACTATCCTCTTAAACATCCAACCAAA 59.607 37.037 0.00 0.00 0.00 3.28
6540 6772 6.884295 CACTATCCTCTTAAACATCCAACCAA 59.116 38.462 0.00 0.00 0.00 3.67
6541 6773 6.414732 CACTATCCTCTTAAACATCCAACCA 58.585 40.000 0.00 0.00 0.00 3.67
6542 6774 5.823045 CCACTATCCTCTTAAACATCCAACC 59.177 44.000 0.00 0.00 0.00 3.77
6543 6775 6.415573 ACCACTATCCTCTTAAACATCCAAC 58.584 40.000 0.00 0.00 0.00 3.77
6544 6776 6.636454 ACCACTATCCTCTTAAACATCCAA 57.364 37.500 0.00 0.00 0.00 3.53
6545 6777 7.016268 GGATACCACTATCCTCTTAAACATCCA 59.984 40.741 0.21 0.00 43.87 3.41
6546 6778 7.387643 GGATACCACTATCCTCTTAAACATCC 58.612 42.308 0.21 0.00 43.87 3.51
6558 6790 3.764972 GGTGAGCTAGGATACCACTATCC 59.235 52.174 0.00 0.00 46.62 2.59
6559 6791 4.408276 TGGTGAGCTAGGATACCACTATC 58.592 47.826 0.00 0.00 38.23 2.08
6560 6792 4.140900 ACTGGTGAGCTAGGATACCACTAT 60.141 45.833 0.00 0.00 38.23 2.12
6561 6793 3.204606 ACTGGTGAGCTAGGATACCACTA 59.795 47.826 0.00 0.00 38.23 2.74
6562 6794 2.023888 ACTGGTGAGCTAGGATACCACT 60.024 50.000 0.00 0.00 38.23 4.00
6563 6795 2.389715 ACTGGTGAGCTAGGATACCAC 58.610 52.381 0.00 0.00 38.23 4.16
6564 6796 2.848678 ACTGGTGAGCTAGGATACCA 57.151 50.000 0.00 0.00 40.67 3.25
6565 6797 5.810080 AAATACTGGTGAGCTAGGATACC 57.190 43.478 0.00 0.00 37.17 2.73
6566 6798 8.035984 GGAATAAATACTGGTGAGCTAGGATAC 58.964 40.741 0.00 0.00 0.00 2.24
6567 6799 7.956315 AGGAATAAATACTGGTGAGCTAGGATA 59.044 37.037 0.00 0.00 0.00 2.59
6568 6800 6.789959 AGGAATAAATACTGGTGAGCTAGGAT 59.210 38.462 0.00 0.00 0.00 3.24
6569 6801 6.143915 AGGAATAAATACTGGTGAGCTAGGA 58.856 40.000 0.00 0.00 0.00 2.94
6570 6802 6.426646 AGGAATAAATACTGGTGAGCTAGG 57.573 41.667 0.00 0.00 0.00 3.02
6571 6803 7.439655 GTCAAGGAATAAATACTGGTGAGCTAG 59.560 40.741 0.00 0.00 0.00 3.42
6572 6804 7.125811 AGTCAAGGAATAAATACTGGTGAGCTA 59.874 37.037 0.00 0.00 0.00 3.32
6573 6805 6.069963 AGTCAAGGAATAAATACTGGTGAGCT 60.070 38.462 0.00 0.00 0.00 4.09
6574 6806 6.116126 AGTCAAGGAATAAATACTGGTGAGC 58.884 40.000 0.00 0.00 0.00 4.26
6575 6807 7.824289 TCAAGTCAAGGAATAAATACTGGTGAG 59.176 37.037 0.00 0.00 0.00 3.51
6576 6808 7.606456 GTCAAGTCAAGGAATAAATACTGGTGA 59.394 37.037 0.00 0.00 0.00 4.02
6577 6809 7.390440 TGTCAAGTCAAGGAATAAATACTGGTG 59.610 37.037 0.00 0.00 0.00 4.17
6578 6810 7.390718 GTGTCAAGTCAAGGAATAAATACTGGT 59.609 37.037 0.00 0.00 0.00 4.00
6579 6811 7.607991 AGTGTCAAGTCAAGGAATAAATACTGG 59.392 37.037 0.00 0.00 0.00 4.00
6580 6812 8.446273 CAGTGTCAAGTCAAGGAATAAATACTG 58.554 37.037 0.00 0.00 0.00 2.74
6581 6813 8.375506 TCAGTGTCAAGTCAAGGAATAAATACT 58.624 33.333 0.00 0.00 0.00 2.12
6582 6814 8.547967 TCAGTGTCAAGTCAAGGAATAAATAC 57.452 34.615 0.00 0.00 0.00 1.89
6583 6815 9.166173 CATCAGTGTCAAGTCAAGGAATAAATA 57.834 33.333 0.00 0.00 0.00 1.40
6584 6816 7.362401 GCATCAGTGTCAAGTCAAGGAATAAAT 60.362 37.037 0.00 0.00 0.00 1.40
6585 6817 6.072508 GCATCAGTGTCAAGTCAAGGAATAAA 60.073 38.462 0.00 0.00 0.00 1.40
6586 6818 5.412594 GCATCAGTGTCAAGTCAAGGAATAA 59.587 40.000 0.00 0.00 0.00 1.40
6587 6819 4.937620 GCATCAGTGTCAAGTCAAGGAATA 59.062 41.667 0.00 0.00 0.00 1.75
6588 6820 3.755378 GCATCAGTGTCAAGTCAAGGAAT 59.245 43.478 0.00 0.00 0.00 3.01
6589 6821 3.141398 GCATCAGTGTCAAGTCAAGGAA 58.859 45.455 0.00 0.00 0.00 3.36
6590 6822 2.369860 AGCATCAGTGTCAAGTCAAGGA 59.630 45.455 0.00 0.00 0.00 3.36
6591 6823 2.740981 GAGCATCAGTGTCAAGTCAAGG 59.259 50.000 0.00 0.00 33.17 3.61
6592 6824 3.396560 TGAGCATCAGTGTCAAGTCAAG 58.603 45.455 0.00 0.00 42.56 3.02
6593 6825 3.473923 TGAGCATCAGTGTCAAGTCAA 57.526 42.857 0.00 0.00 42.56 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.