Multiple sequence alignment - TraesCS5B01G363400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G363400 chr5B 100.000 2747 0 0 1 2747 542332590 542329844 0.000000e+00 5073.0
1 TraesCS5B01G363400 chr5B 82.530 498 56 21 1150 1635 542295752 542295274 2.550000e-110 409.0
2 TraesCS5B01G363400 chr5B 83.152 368 44 5 1286 1635 542320058 542319691 1.230000e-83 320.0
3 TraesCS5B01G363400 chr5B 82.192 146 18 5 2227 2371 542294883 542294745 4.810000e-23 119.0
4 TraesCS5B01G363400 chr5B 75.000 200 25 16 2533 2721 542318330 542318145 4.910000e-08 69.4
5 TraesCS5B01G363400 chr5A 86.674 893 70 21 1154 2010 562116978 562116099 0.000000e+00 944.0
6 TraesCS5B01G363400 chr5A 91.160 543 29 9 2215 2745 562115959 562115424 0.000000e+00 719.0
7 TraesCS5B01G363400 chr5A 82.749 371 43 9 1286 1635 562108453 562108083 7.390000e-81 311.0
8 TraesCS5B01G363400 chr5A 78.599 514 61 33 1161 1642 562407375 562406879 7.440000e-76 294.0
9 TraesCS5B01G363400 chr5A 73.805 481 47 40 50 500 562117790 562117359 1.730000e-22 117.0
10 TraesCS5B01G363400 chr5A 86.813 91 1 5 2097 2176 562116057 562115967 1.050000e-14 91.6
11 TraesCS5B01G363400 chr5D 94.234 555 21 6 2196 2745 445071984 445071436 0.000000e+00 837.0
12 TraesCS5B01G363400 chr5D 85.693 685 37 22 988 1647 445073094 445072446 0.000000e+00 665.0
13 TraesCS5B01G363400 chr5D 83.629 507 53 23 1154 1636 445056166 445055666 1.500000e-122 449.0
14 TraesCS5B01G363400 chr5D 81.139 509 39 27 1691 2176 445072448 445071974 3.360000e-94 355.0
15 TraesCS5B01G363400 chr5D 80.039 511 70 22 1154 1635 444976560 444976053 1.570000e-92 350.0
16 TraesCS5B01G363400 chr5D 80.473 507 48 18 1177 1635 445062924 445062421 9.420000e-90 340.0
17 TraesCS5B01G363400 chr5D 100.000 31 0 0 535 565 445073312 445073282 1.060000e-04 58.4
18 TraesCS5B01G363400 chr1A 86.792 265 29 3 602 860 352126241 352125977 9.620000e-75 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G363400 chr5B 542329844 542332590 2746 True 5073.00 5073 100.0000 1 2747 1 chr5B.!!$R1 2746
1 TraesCS5B01G363400 chr5B 542294745 542295752 1007 True 264.00 409 82.3610 1150 2371 2 chr5B.!!$R2 1221
2 TraesCS5B01G363400 chr5A 562115424 562117790 2366 True 467.90 944 84.6130 50 2745 4 chr5A.!!$R3 2695
3 TraesCS5B01G363400 chr5D 445071436 445073312 1876 True 478.85 837 90.2665 535 2745 4 chr5D.!!$R4 2210
4 TraesCS5B01G363400 chr5D 445055666 445056166 500 True 449.00 449 83.6290 1154 1636 1 chr5D.!!$R2 482
5 TraesCS5B01G363400 chr5D 444976053 444976560 507 True 350.00 350 80.0390 1154 1635 1 chr5D.!!$R1 481
6 TraesCS5B01G363400 chr5D 445062421 445062924 503 True 340.00 340 80.4730 1177 1635 1 chr5D.!!$R3 458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 278 0.029567 AGCGATGCACGTACTAGCTC 59.97 55.0 9.76 3.17 44.6 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 2460 0.391528 GCGCCCAAGCAAAAATGGAT 60.392 50.0 0.0 0.0 39.12 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.481954 GAACCGAGAAATCATTTGTACAGT 57.518 37.500 0.00 0.00 0.00 3.55
24 25 7.591006 GAACCGAGAAATCATTTGTACAGTA 57.409 36.000 0.00 0.00 0.00 2.74
25 26 6.963049 ACCGAGAAATCATTTGTACAGTAC 57.037 37.500 3.49 3.49 0.00 2.73
26 27 5.575606 ACCGAGAAATCATTTGTACAGTACG 59.424 40.000 6.23 0.00 0.00 3.67
27 28 5.575606 CCGAGAAATCATTTGTACAGTACGT 59.424 40.000 6.23 0.00 0.00 3.57
28 29 6.237490 CCGAGAAATCATTTGTACAGTACGTC 60.237 42.308 6.23 0.00 0.00 4.34
29 30 6.527023 CGAGAAATCATTTGTACAGTACGTCT 59.473 38.462 6.23 0.00 0.00 4.18
30 31 7.061905 CGAGAAATCATTTGTACAGTACGTCTT 59.938 37.037 6.23 0.00 0.00 3.01
31 32 8.018677 AGAAATCATTTGTACAGTACGTCTTG 57.981 34.615 6.23 0.00 0.00 3.02
32 33 5.779806 ATCATTTGTACAGTACGTCTTGC 57.220 39.130 6.23 0.00 0.00 4.01
33 34 4.878439 TCATTTGTACAGTACGTCTTGCT 58.122 39.130 6.23 0.00 0.00 3.91
34 35 5.294356 TCATTTGTACAGTACGTCTTGCTT 58.706 37.500 6.23 0.00 0.00 3.91
35 36 5.176774 TCATTTGTACAGTACGTCTTGCTTG 59.823 40.000 6.23 0.00 0.00 4.01
36 37 3.720949 TGTACAGTACGTCTTGCTTGT 57.279 42.857 6.23 0.00 0.00 3.16
37 38 4.834357 TGTACAGTACGTCTTGCTTGTA 57.166 40.909 6.23 0.00 0.00 2.41
38 39 5.381174 TGTACAGTACGTCTTGCTTGTAT 57.619 39.130 6.23 0.00 0.00 2.29
39 40 5.775686 TGTACAGTACGTCTTGCTTGTATT 58.224 37.500 6.23 0.00 0.00 1.89
40 41 6.912082 TGTACAGTACGTCTTGCTTGTATTA 58.088 36.000 6.23 0.00 0.00 0.98
41 42 6.803320 TGTACAGTACGTCTTGCTTGTATTAC 59.197 38.462 6.23 0.00 0.00 1.89
42 43 5.775686 ACAGTACGTCTTGCTTGTATTACA 58.224 37.500 0.00 0.00 0.00 2.41
43 44 5.632347 ACAGTACGTCTTGCTTGTATTACAC 59.368 40.000 0.00 0.00 0.00 2.90
44 45 4.855388 AGTACGTCTTGCTTGTATTACACG 59.145 41.667 0.00 0.00 0.00 4.49
45 46 3.904571 ACGTCTTGCTTGTATTACACGA 58.095 40.909 4.61 0.00 0.00 4.35
46 47 4.491676 ACGTCTTGCTTGTATTACACGAT 58.508 39.130 4.61 0.00 0.00 3.73
47 48 4.561606 ACGTCTTGCTTGTATTACACGATC 59.438 41.667 4.61 0.00 0.00 3.69
48 49 4.316446 CGTCTTGCTTGTATTACACGATCG 60.316 45.833 14.88 14.88 0.00 3.69
70 71 4.449068 CGTTGGAATCCAGTATAGCACATC 59.551 45.833 0.86 0.00 33.81 3.06
84 85 0.455815 CACATCGACCGACTGGATCA 59.544 55.000 0.00 0.00 39.21 2.92
87 88 2.168521 ACATCGACCGACTGGATCAATT 59.831 45.455 0.00 0.00 39.21 2.32
108 109 2.610833 TGATGATGACGAATGAAGCTGC 59.389 45.455 0.00 0.00 0.00 5.25
114 125 1.596727 GACGAATGAAGCTGCCAGATC 59.403 52.381 0.00 0.00 0.00 2.75
117 128 2.492012 GAATGAAGCTGCCAGATCGAT 58.508 47.619 0.00 0.00 0.00 3.59
131 142 5.462398 GCCAGATCGATTACGTCAACTTAAT 59.538 40.000 0.00 0.00 40.69 1.40
141 152 2.975193 CGTCAACTTAATGTCGTCGTGA 59.025 45.455 0.00 0.00 0.00 4.35
152 163 2.046283 TCGTCGTGACAGACATGAAC 57.954 50.000 0.00 0.00 44.68 3.18
153 164 1.060713 CGTCGTGACAGACATGAACC 58.939 55.000 0.00 0.00 44.68 3.62
154 165 1.060713 GTCGTGACAGACATGAACCG 58.939 55.000 0.00 0.00 44.68 4.44
155 166 0.671796 TCGTGACAGACATGAACCGT 59.328 50.000 0.00 0.00 40.95 4.83
156 167 1.060713 CGTGACAGACATGAACCGTC 58.939 55.000 0.00 2.07 37.69 4.79
157 168 1.060713 GTGACAGACATGAACCGTCG 58.939 55.000 0.00 0.00 38.46 5.12
158 169 0.955905 TGACAGACATGAACCGTCGA 59.044 50.000 0.00 0.00 38.46 4.20
159 170 1.335597 TGACAGACATGAACCGTCGAC 60.336 52.381 5.18 5.18 38.46 4.20
160 171 0.386858 ACAGACATGAACCGTCGACG 60.387 55.000 30.33 30.33 38.46 5.12
181 192 2.028112 GGGCCATATGAGATACGCAGAA 60.028 50.000 4.39 0.00 0.00 3.02
193 204 0.033504 ACGCAGAAATGACAGGACGT 59.966 50.000 0.00 0.00 0.00 4.34
194 205 1.271379 ACGCAGAAATGACAGGACGTA 59.729 47.619 0.00 0.00 0.00 3.57
195 206 1.654105 CGCAGAAATGACAGGACGTAC 59.346 52.381 0.00 0.00 0.00 3.67
198 209 3.671433 GCAGAAATGACAGGACGTACGTA 60.671 47.826 22.87 4.59 0.00 3.57
208 219 3.496711 CGTACGTACGTAGGCCCA 58.503 61.111 33.95 8.58 44.13 5.36
210 221 1.089481 CGTACGTACGTAGGCCCAGA 61.089 60.000 33.95 7.13 44.13 3.86
219 230 1.207089 CGTAGGCCCAGATGAAGTGAA 59.793 52.381 0.00 0.00 0.00 3.18
225 236 2.815589 GCCCAGATGAAGTGAAGTGGTT 60.816 50.000 0.00 0.00 0.00 3.67
228 239 3.480470 CAGATGAAGTGAAGTGGTTGGT 58.520 45.455 0.00 0.00 0.00 3.67
229 240 3.499918 CAGATGAAGTGAAGTGGTTGGTC 59.500 47.826 0.00 0.00 0.00 4.02
237 248 1.127951 GAAGTGGTTGGTCATTACGCG 59.872 52.381 3.53 3.53 0.00 6.01
241 252 1.017177 GGTTGGTCATTACGCGAGCA 61.017 55.000 15.93 1.92 39.01 4.26
247 258 1.803922 CATTACGCGAGCACCGACA 60.804 57.895 15.93 0.00 41.76 4.35
249 260 1.076533 ATTACGCGAGCACCGACAAG 61.077 55.000 15.93 0.00 41.76 3.16
253 264 2.507102 CGAGCACCGACAAGCGAT 60.507 61.111 0.00 0.00 44.57 4.58
254 265 2.792290 CGAGCACCGACAAGCGATG 61.792 63.158 0.00 0.00 44.57 3.84
257 268 2.476051 CACCGACAAGCGATGCAC 59.524 61.111 0.00 0.00 44.57 4.57
258 269 3.112075 ACCGACAAGCGATGCACG 61.112 61.111 0.00 0.00 44.57 5.34
259 270 3.112075 CCGACAAGCGATGCACGT 61.112 61.111 9.76 0.00 44.57 4.49
260 271 1.803922 CCGACAAGCGATGCACGTA 60.804 57.895 9.76 0.00 44.57 3.57
261 272 1.340465 CGACAAGCGATGCACGTAC 59.660 57.895 9.76 0.00 44.57 3.67
262 273 1.071019 CGACAAGCGATGCACGTACT 61.071 55.000 9.76 0.00 44.57 2.73
263 274 1.792632 CGACAAGCGATGCACGTACTA 60.793 52.381 9.76 0.00 44.57 1.82
264 275 1.846782 GACAAGCGATGCACGTACTAG 59.153 52.381 9.76 0.00 44.60 2.57
265 276 0.572590 CAAGCGATGCACGTACTAGC 59.427 55.000 9.76 0.00 44.60 3.42
266 277 0.456221 AAGCGATGCACGTACTAGCT 59.544 50.000 9.76 0.00 44.60 3.32
267 278 0.029567 AGCGATGCACGTACTAGCTC 59.970 55.000 9.76 3.17 44.60 4.09
268 279 0.029567 GCGATGCACGTACTAGCTCT 59.970 55.000 9.76 0.00 44.60 4.09
269 280 1.747956 CGATGCACGTACTAGCTCTG 58.252 55.000 0.00 0.00 37.22 3.35
270 281 1.598183 CGATGCACGTACTAGCTCTGG 60.598 57.143 0.00 0.00 37.22 3.86
271 282 0.103208 ATGCACGTACTAGCTCTGGC 59.897 55.000 0.00 0.00 39.06 4.85
302 313 2.485479 GGTTTGCTCACTCACTTCCTCA 60.485 50.000 0.00 0.00 0.00 3.86
311 322 1.883275 CTCACTTCCTCAGTCGTCACT 59.117 52.381 0.00 0.00 30.92 3.41
352 386 9.839817 TCAGGTATGAGATATATCTACAGTAGC 57.160 37.037 15.31 13.61 37.25 3.58
353 387 9.620259 CAGGTATGAGATATATCTACAGTAGCA 57.380 37.037 15.31 7.72 37.25 3.49
354 388 9.845740 AGGTATGAGATATATCTACAGTAGCAG 57.154 37.037 15.31 0.00 37.25 4.24
355 389 9.621629 GGTATGAGATATATCTACAGTAGCAGT 57.378 37.037 15.31 2.55 37.25 4.40
366 400 2.506217 TAGCAGTAGCACGCACGC 60.506 61.111 0.00 0.00 45.49 5.34
420 454 0.239347 ACAGTACGTACCACGCACTC 59.761 55.000 21.80 0.00 44.08 3.51
421 455 0.455633 CAGTACGTACCACGCACTCC 60.456 60.000 21.80 0.00 44.08 3.85
422 456 0.607489 AGTACGTACCACGCACTCCT 60.607 55.000 21.80 0.00 44.08 3.69
423 457 2.811762 AGTACGTACCACGCACTCCTG 61.812 57.143 21.80 0.00 44.08 3.86
424 458 2.809601 CGTACCACGCACTCCTGC 60.810 66.667 0.00 0.00 40.38 4.85
425 459 2.342279 GTACCACGCACTCCTGCA 59.658 61.111 0.00 0.00 44.50 4.41
426 460 2.027625 GTACCACGCACTCCTGCAC 61.028 63.158 0.00 0.00 44.50 4.57
427 461 2.503382 TACCACGCACTCCTGCACA 61.503 57.895 0.00 0.00 44.50 4.57
428 462 1.826340 TACCACGCACTCCTGCACAT 61.826 55.000 0.00 0.00 44.50 3.21
429 463 2.683859 CCACGCACTCCTGCACATG 61.684 63.158 0.00 0.00 44.50 3.21
430 464 2.359107 ACGCACTCCTGCACATGG 60.359 61.111 0.00 0.00 44.50 3.66
431 465 3.129502 CGCACTCCTGCACATGGG 61.130 66.667 0.00 0.00 44.50 4.00
436 470 0.250901 ACTCCTGCACATGGGTGTTC 60.251 55.000 0.00 0.00 46.95 3.18
456 490 3.664107 TCAGTCCAATGTGTGTTAGCTC 58.336 45.455 0.00 0.00 0.00 4.09
457 491 2.413112 CAGTCCAATGTGTGTTAGCTCG 59.587 50.000 0.00 0.00 0.00 5.03
478 520 3.558505 GATTTGTCGCATGCATGTATCC 58.441 45.455 26.79 13.33 0.00 2.59
509 551 3.552384 CCGGCCGGCCTGGTAATA 61.552 66.667 41.01 0.00 41.21 0.98
510 552 2.747686 CGGCCGGCCTGGTAATAT 59.252 61.111 41.01 0.00 41.21 1.28
511 553 1.546589 CCGGCCGGCCTGGTAATATA 61.547 60.000 41.01 0.00 41.21 0.86
512 554 0.390735 CGGCCGGCCTGGTAATATAC 60.391 60.000 41.01 12.39 41.21 1.47
513 555 0.981943 GGCCGGCCTGGTAATATACT 59.018 55.000 38.76 0.00 41.21 2.12
514 556 1.066358 GGCCGGCCTGGTAATATACTC 60.066 57.143 38.76 5.95 41.21 2.59
515 557 1.066358 GCCGGCCTGGTAATATACTCC 60.066 57.143 18.11 0.00 41.21 3.85
516 558 2.537143 CCGGCCTGGTAATATACTCCT 58.463 52.381 0.00 0.00 0.00 3.69
517 559 3.705051 CCGGCCTGGTAATATACTCCTA 58.295 50.000 0.00 0.00 0.00 2.94
518 560 3.446516 CCGGCCTGGTAATATACTCCTAC 59.553 52.174 0.00 0.00 0.00 3.18
519 561 4.342359 CGGCCTGGTAATATACTCCTACT 58.658 47.826 0.00 0.00 0.00 2.57
520 562 5.503927 CGGCCTGGTAATATACTCCTACTA 58.496 45.833 0.00 0.00 0.00 1.82
521 563 5.356470 CGGCCTGGTAATATACTCCTACTAC 59.644 48.000 0.00 0.00 0.00 2.73
522 564 6.492274 GGCCTGGTAATATACTCCTACTACT 58.508 44.000 0.00 0.00 0.00 2.57
523 565 6.602803 GGCCTGGTAATATACTCCTACTACTC 59.397 46.154 0.00 0.00 0.00 2.59
524 566 6.315891 GCCTGGTAATATACTCCTACTACTCG 59.684 46.154 0.00 0.00 0.00 4.18
525 567 7.393216 CCTGGTAATATACTCCTACTACTCGT 58.607 42.308 0.00 0.00 0.00 4.18
526 568 8.535335 CCTGGTAATATACTCCTACTACTCGTA 58.465 40.741 0.00 0.00 0.00 3.43
527 569 9.935241 CTGGTAATATACTCCTACTACTCGTAA 57.065 37.037 0.00 0.00 0.00 3.18
567 609 7.697352 TTTGTTTTCATTTCATGCAGTAGTG 57.303 32.000 0.00 0.00 0.00 2.74
570 612 8.109705 TGTTTTCATTTCATGCAGTAGTGTAT 57.890 30.769 0.00 0.00 0.00 2.29
571 613 9.225436 TGTTTTCATTTCATGCAGTAGTGTATA 57.775 29.630 0.38 0.00 0.00 1.47
573 615 8.785329 TTTCATTTCATGCAGTAGTGTATACA 57.215 30.769 0.08 0.08 0.00 2.29
603 709 8.991243 TTTATTTTCATGCAGTAGTACGTACT 57.009 30.769 29.62 29.62 43.31 2.73
604 710 8.624701 TTATTTTCATGCAGTAGTACGTACTC 57.375 34.615 30.53 20.84 40.27 2.59
605 711 5.632244 TTTCATGCAGTAGTACGTACTCA 57.368 39.130 30.53 21.85 40.27 3.41
608 714 6.930667 TCATGCAGTAGTACGTACTCATTA 57.069 37.500 30.53 16.11 40.27 1.90
609 715 7.324354 TCATGCAGTAGTACGTACTCATTAA 57.676 36.000 30.53 15.60 40.27 1.40
610 716 7.937649 TCATGCAGTAGTACGTACTCATTAAT 58.062 34.615 30.53 17.02 40.27 1.40
611 717 9.059260 TCATGCAGTAGTACGTACTCATTAATA 57.941 33.333 30.53 9.71 40.27 0.98
612 718 9.114965 CATGCAGTAGTACGTACTCATTAATAC 57.885 37.037 30.53 20.44 40.27 1.89
613 719 8.442632 TGCAGTAGTACGTACTCATTAATACT 57.557 34.615 30.53 22.20 40.27 2.12
614 720 8.896744 TGCAGTAGTACGTACTCATTAATACTT 58.103 33.333 30.53 9.38 40.27 2.24
615 721 9.727627 GCAGTAGTACGTACTCATTAATACTTT 57.272 33.333 30.53 6.03 40.27 2.66
623 729 9.498176 ACGTACTCATTAATACTTTTGAAAGGT 57.502 29.630 8.23 0.00 40.31 3.50
637 743 9.191995 ACTTTTGAAAGGTATTTTATTTGCTCG 57.808 29.630 8.23 0.00 40.31 5.03
638 744 8.527567 TTTTGAAAGGTATTTTATTTGCTCGG 57.472 30.769 0.00 0.00 0.00 4.63
639 745 7.455641 TTGAAAGGTATTTTATTTGCTCGGA 57.544 32.000 0.00 0.00 0.00 4.55
640 746 7.083875 TGAAAGGTATTTTATTTGCTCGGAG 57.916 36.000 0.00 0.00 0.00 4.63
641 747 6.657541 TGAAAGGTATTTTATTTGCTCGGAGT 59.342 34.615 6.90 0.00 0.00 3.85
642 748 7.175990 TGAAAGGTATTTTATTTGCTCGGAGTT 59.824 33.333 6.90 0.00 0.00 3.01
643 749 6.679327 AGGTATTTTATTTGCTCGGAGTTC 57.321 37.500 6.90 0.00 0.00 3.01
644 750 5.589050 AGGTATTTTATTTGCTCGGAGTTCC 59.411 40.000 6.90 0.00 0.00 3.62
645 751 5.589050 GGTATTTTATTTGCTCGGAGTTCCT 59.411 40.000 6.90 0.00 0.00 3.36
646 752 5.567138 ATTTTATTTGCTCGGAGTTCCTG 57.433 39.130 6.90 0.00 0.00 3.86
647 753 3.695830 TTATTTGCTCGGAGTTCCTGT 57.304 42.857 6.90 0.00 0.00 4.00
648 754 4.811969 TTATTTGCTCGGAGTTCCTGTA 57.188 40.909 6.90 0.00 0.00 2.74
649 755 2.743636 TTTGCTCGGAGTTCCTGTAG 57.256 50.000 6.90 0.00 0.00 2.74
650 756 0.895530 TTGCTCGGAGTTCCTGTAGG 59.104 55.000 6.90 0.00 0.00 3.18
651 757 0.251653 TGCTCGGAGTTCCTGTAGGT 60.252 55.000 6.90 0.00 36.34 3.08
652 758 0.896226 GCTCGGAGTTCCTGTAGGTT 59.104 55.000 6.90 0.00 36.34 3.50
653 759 2.097825 GCTCGGAGTTCCTGTAGGTTA 58.902 52.381 6.90 0.00 36.34 2.85
654 760 2.159268 GCTCGGAGTTCCTGTAGGTTAC 60.159 54.545 6.90 0.00 36.34 2.50
655 761 2.426381 CTCGGAGTTCCTGTAGGTTACC 59.574 54.545 0.00 0.00 36.34 2.85
656 762 2.042162 TCGGAGTTCCTGTAGGTTACCT 59.958 50.000 9.57 9.57 37.71 3.08
657 763 2.165845 CGGAGTTCCTGTAGGTTACCTG 59.834 54.545 15.13 0.00 34.61 4.00
658 764 3.438183 GGAGTTCCTGTAGGTTACCTGA 58.562 50.000 15.13 0.00 34.61 3.86
659 765 4.031611 GGAGTTCCTGTAGGTTACCTGAT 58.968 47.826 15.13 0.00 34.61 2.90
660 766 5.206587 GGAGTTCCTGTAGGTTACCTGATA 58.793 45.833 15.13 0.00 34.61 2.15
661 767 5.659971 GGAGTTCCTGTAGGTTACCTGATAA 59.340 44.000 15.13 0.00 34.61 1.75
662 768 6.155737 GGAGTTCCTGTAGGTTACCTGATAAA 59.844 42.308 15.13 0.00 34.61 1.40
663 769 7.184067 AGTTCCTGTAGGTTACCTGATAAAG 57.816 40.000 15.13 0.00 34.61 1.85
664 770 5.609533 TCCTGTAGGTTACCTGATAAAGC 57.390 43.478 15.13 0.00 34.61 3.51
665 771 5.027460 TCCTGTAGGTTACCTGATAAAGCA 58.973 41.667 15.13 1.20 34.61 3.91
666 772 5.486063 TCCTGTAGGTTACCTGATAAAGCAA 59.514 40.000 15.13 0.00 34.61 3.91
667 773 6.013206 TCCTGTAGGTTACCTGATAAAGCAAA 60.013 38.462 15.13 0.00 34.61 3.68
668 774 6.828785 CCTGTAGGTTACCTGATAAAGCAAAT 59.171 38.462 15.13 0.00 34.61 2.32
669 775 7.012421 CCTGTAGGTTACCTGATAAAGCAAATC 59.988 40.741 15.13 0.00 34.61 2.17
670 776 7.630082 TGTAGGTTACCTGATAAAGCAAATCT 58.370 34.615 15.13 0.00 34.61 2.40
671 777 8.764558 TGTAGGTTACCTGATAAAGCAAATCTA 58.235 33.333 15.13 0.00 34.61 1.98
672 778 9.262358 GTAGGTTACCTGATAAAGCAAATCTAG 57.738 37.037 15.13 0.00 34.61 2.43
673 779 7.283329 AGGTTACCTGATAAAGCAAATCTAGG 58.717 38.462 1.74 0.00 29.57 3.02
674 780 7.054751 GGTTACCTGATAAAGCAAATCTAGGT 58.945 38.462 14.90 14.90 37.95 3.08
675 781 7.556635 GGTTACCTGATAAAGCAAATCTAGGTT 59.443 37.037 15.35 0.00 36.79 3.50
676 782 8.957466 GTTACCTGATAAAGCAAATCTAGGTTT 58.043 33.333 15.35 0.00 36.79 3.27
677 783 9.528489 TTACCTGATAAAGCAAATCTAGGTTTT 57.472 29.630 0.00 0.00 36.79 2.43
678 784 8.422577 ACCTGATAAAGCAAATCTAGGTTTTT 57.577 30.769 0.00 0.00 37.75 1.94
679 785 8.523658 ACCTGATAAAGCAAATCTAGGTTTTTC 58.476 33.333 0.00 0.00 37.75 2.29
680 786 7.976175 CCTGATAAAGCAAATCTAGGTTTTTCC 59.024 37.037 0.00 0.00 37.75 3.13
682 788 9.088987 TGATAAAGCAAATCTAGGTTTTTCCTT 57.911 29.630 0.00 0.00 45.67 3.36
683 789 9.929180 GATAAAGCAAATCTAGGTTTTTCCTTT 57.071 29.630 16.52 16.52 45.67 3.11
684 790 9.929180 ATAAAGCAAATCTAGGTTTTTCCTTTC 57.071 29.630 16.07 0.00 45.67 2.62
685 791 6.346477 AGCAAATCTAGGTTTTTCCTTTCC 57.654 37.500 0.00 0.00 45.67 3.13
686 792 5.246203 AGCAAATCTAGGTTTTTCCTTTCCC 59.754 40.000 0.00 0.00 45.67 3.97
687 793 5.246203 GCAAATCTAGGTTTTTCCTTTCCCT 59.754 40.000 0.00 0.00 45.67 4.20
688 794 6.691508 CAAATCTAGGTTTTTCCTTTCCCTG 58.308 40.000 0.00 0.00 45.67 4.45
689 795 5.600669 ATCTAGGTTTTTCCTTTCCCTGT 57.399 39.130 0.00 0.00 45.67 4.00
690 796 4.725490 TCTAGGTTTTTCCTTTCCCTGTG 58.275 43.478 0.00 0.00 45.67 3.66
691 797 3.680777 AGGTTTTTCCTTTCCCTGTGA 57.319 42.857 0.00 0.00 45.67 3.58
692 798 4.199002 AGGTTTTTCCTTTCCCTGTGAT 57.801 40.909 0.00 0.00 45.67 3.06
693 799 3.897505 AGGTTTTTCCTTTCCCTGTGATG 59.102 43.478 0.00 0.00 45.67 3.07
694 800 3.006859 GGTTTTTCCTTTCCCTGTGATGG 59.993 47.826 0.00 0.00 0.00 3.51
695 801 3.893753 TTTTCCTTTCCCTGTGATGGA 57.106 42.857 0.00 0.00 0.00 3.41
696 802 2.879103 TTCCTTTCCCTGTGATGGAC 57.121 50.000 0.00 0.00 0.00 4.02
697 803 0.991920 TCCTTTCCCTGTGATGGACC 59.008 55.000 0.00 0.00 0.00 4.46
698 804 0.392998 CCTTTCCCTGTGATGGACCG 60.393 60.000 0.00 0.00 0.00 4.79
699 805 0.613260 CTTTCCCTGTGATGGACCGA 59.387 55.000 0.00 0.00 0.00 4.69
700 806 0.613260 TTTCCCTGTGATGGACCGAG 59.387 55.000 0.00 0.00 0.00 4.63
701 807 1.264749 TTCCCTGTGATGGACCGAGG 61.265 60.000 0.00 0.00 0.00 4.63
702 808 2.735772 CCCTGTGATGGACCGAGGG 61.736 68.421 0.00 0.00 37.63 4.30
703 809 2.735772 CCTGTGATGGACCGAGGGG 61.736 68.421 0.00 0.00 40.11 4.79
704 810 2.687200 TGTGATGGACCGAGGGGG 60.687 66.667 0.00 0.00 43.62 5.40
705 811 2.365105 GTGATGGACCGAGGGGGA 60.365 66.667 0.00 0.00 39.97 4.81
706 812 1.993391 GTGATGGACCGAGGGGGAA 60.993 63.158 0.00 0.00 39.97 3.97
707 813 1.993391 TGATGGACCGAGGGGGAAC 60.993 63.158 0.00 0.00 39.97 3.62
708 814 1.993391 GATGGACCGAGGGGGAACA 60.993 63.158 0.00 0.00 39.97 3.18
709 815 1.307866 ATGGACCGAGGGGGAACAT 60.308 57.895 0.00 0.00 39.97 2.71
710 816 1.635817 ATGGACCGAGGGGGAACATG 61.636 60.000 0.00 0.00 39.97 3.21
711 817 2.298661 GGACCGAGGGGGAACATGT 61.299 63.158 0.00 0.00 39.97 3.21
712 818 1.221021 GACCGAGGGGGAACATGTC 59.779 63.158 0.00 0.00 39.97 3.06
713 819 1.537889 ACCGAGGGGGAACATGTCA 60.538 57.895 0.00 0.00 39.97 3.58
714 820 1.131303 ACCGAGGGGGAACATGTCAA 61.131 55.000 0.00 0.00 39.97 3.18
715 821 0.392998 CCGAGGGGGAACATGTCAAG 60.393 60.000 0.00 0.00 38.47 3.02
716 822 0.324943 CGAGGGGGAACATGTCAAGT 59.675 55.000 0.00 0.00 0.00 3.16
717 823 1.553248 CGAGGGGGAACATGTCAAGTA 59.447 52.381 0.00 0.00 0.00 2.24
718 824 2.027561 CGAGGGGGAACATGTCAAGTAA 60.028 50.000 0.00 0.00 0.00 2.24
719 825 3.370527 CGAGGGGGAACATGTCAAGTAAT 60.371 47.826 0.00 0.00 0.00 1.89
720 826 4.200092 GAGGGGGAACATGTCAAGTAATC 58.800 47.826 0.00 0.00 0.00 1.75
721 827 3.852578 AGGGGGAACATGTCAAGTAATCT 59.147 43.478 0.00 0.00 0.00 2.40
722 828 4.292306 AGGGGGAACATGTCAAGTAATCTT 59.708 41.667 0.00 0.00 0.00 2.40
723 829 5.016831 GGGGGAACATGTCAAGTAATCTTT 58.983 41.667 0.00 0.00 0.00 2.52
724 830 5.480422 GGGGGAACATGTCAAGTAATCTTTT 59.520 40.000 0.00 0.00 0.00 2.27
725 831 6.389906 GGGGAACATGTCAAGTAATCTTTTG 58.610 40.000 0.00 0.00 0.00 2.44
726 832 6.389906 GGGAACATGTCAAGTAATCTTTTGG 58.610 40.000 0.00 0.00 0.00 3.28
727 833 6.389906 GGAACATGTCAAGTAATCTTTTGGG 58.610 40.000 0.00 0.00 0.00 4.12
728 834 6.208599 GGAACATGTCAAGTAATCTTTTGGGA 59.791 38.462 0.00 0.00 0.00 4.37
729 835 7.093771 GGAACATGTCAAGTAATCTTTTGGGAT 60.094 37.037 0.00 0.00 0.00 3.85
730 836 7.396540 ACATGTCAAGTAATCTTTTGGGATC 57.603 36.000 0.00 0.00 0.00 3.36
731 837 6.947733 ACATGTCAAGTAATCTTTTGGGATCA 59.052 34.615 0.00 0.00 0.00 2.92
732 838 7.616935 ACATGTCAAGTAATCTTTTGGGATCAT 59.383 33.333 0.00 0.00 0.00 2.45
733 839 7.395190 TGTCAAGTAATCTTTTGGGATCATG 57.605 36.000 0.00 0.00 0.00 3.07
734 840 6.947733 TGTCAAGTAATCTTTTGGGATCATGT 59.052 34.615 0.00 0.00 0.00 3.21
735 841 7.451255 TGTCAAGTAATCTTTTGGGATCATGTT 59.549 33.333 0.00 0.00 0.00 2.71
736 842 8.306761 GTCAAGTAATCTTTTGGGATCATGTTT 58.693 33.333 0.00 0.00 0.00 2.83
737 843 8.869109 TCAAGTAATCTTTTGGGATCATGTTTT 58.131 29.630 0.00 0.00 0.00 2.43
738 844 9.143631 CAAGTAATCTTTTGGGATCATGTTTTC 57.856 33.333 0.00 0.00 0.00 2.29
739 845 8.655935 AGTAATCTTTTGGGATCATGTTTTCT 57.344 30.769 0.00 0.00 0.00 2.52
740 846 9.093458 AGTAATCTTTTGGGATCATGTTTTCTT 57.907 29.630 0.00 0.00 0.00 2.52
743 849 9.880157 AATCTTTTGGGATCATGTTTTCTTATG 57.120 29.630 0.00 0.00 0.00 1.90
744 850 8.421249 TCTTTTGGGATCATGTTTTCTTATGT 57.579 30.769 0.00 0.00 0.00 2.29
745 851 8.869109 TCTTTTGGGATCATGTTTTCTTATGTT 58.131 29.630 0.00 0.00 0.00 2.71
746 852 9.492973 CTTTTGGGATCATGTTTTCTTATGTTT 57.507 29.630 0.00 0.00 0.00 2.83
786 892 9.651913 AATGCAATTTCGGTAGTTATTTTTCAT 57.348 25.926 0.00 0.00 26.74 2.57
787 893 8.459521 TGCAATTTCGGTAGTTATTTTTCATG 57.540 30.769 0.00 0.00 0.00 3.07
788 894 8.085296 TGCAATTTCGGTAGTTATTTTTCATGT 58.915 29.630 0.00 0.00 0.00 3.21
789 895 8.372521 GCAATTTCGGTAGTTATTTTTCATGTG 58.627 33.333 0.00 0.00 0.00 3.21
790 896 9.619316 CAATTTCGGTAGTTATTTTTCATGTGA 57.381 29.630 0.00 0.00 0.00 3.58
791 897 9.840427 AATTTCGGTAGTTATTTTTCATGTGAG 57.160 29.630 0.00 0.00 0.00 3.51
792 898 7.972832 TTCGGTAGTTATTTTTCATGTGAGT 57.027 32.000 0.00 0.00 0.00 3.41
793 899 7.972832 TCGGTAGTTATTTTTCATGTGAGTT 57.027 32.000 0.00 0.00 0.00 3.01
794 900 7.802738 TCGGTAGTTATTTTTCATGTGAGTTG 58.197 34.615 0.00 0.00 0.00 3.16
795 901 7.021196 CGGTAGTTATTTTTCATGTGAGTTGG 58.979 38.462 0.00 0.00 0.00 3.77
796 902 7.094975 CGGTAGTTATTTTTCATGTGAGTTGGA 60.095 37.037 0.00 0.00 0.00 3.53
797 903 8.573035 GGTAGTTATTTTTCATGTGAGTTGGAA 58.427 33.333 0.00 0.00 0.00 3.53
798 904 9.959749 GTAGTTATTTTTCATGTGAGTTGGAAA 57.040 29.630 0.00 0.00 0.00 3.13
802 908 9.829507 TTATTTTTCATGTGAGTTGGAAAATGT 57.170 25.926 11.22 1.85 40.69 2.71
804 910 8.870160 TTTTTCATGTGAGTTGGAAAATGTAG 57.130 30.769 0.00 0.00 38.56 2.74
805 911 7.581213 TTTCATGTGAGTTGGAAAATGTAGT 57.419 32.000 0.00 0.00 0.00 2.73
806 912 6.801539 TCATGTGAGTTGGAAAATGTAGTC 57.198 37.500 0.00 0.00 0.00 2.59
807 913 6.295249 TCATGTGAGTTGGAAAATGTAGTCA 58.705 36.000 0.00 0.00 0.00 3.41
808 914 6.427853 TCATGTGAGTTGGAAAATGTAGTCAG 59.572 38.462 0.00 0.00 0.00 3.51
809 915 5.924356 TGTGAGTTGGAAAATGTAGTCAGA 58.076 37.500 0.00 0.00 0.00 3.27
810 916 6.533730 TGTGAGTTGGAAAATGTAGTCAGAT 58.466 36.000 0.00 0.00 0.00 2.90
811 917 6.427853 TGTGAGTTGGAAAATGTAGTCAGATG 59.572 38.462 0.00 0.00 0.00 2.90
812 918 6.428159 GTGAGTTGGAAAATGTAGTCAGATGT 59.572 38.462 0.00 0.00 0.00 3.06
813 919 6.998074 TGAGTTGGAAAATGTAGTCAGATGTT 59.002 34.615 0.00 0.00 0.00 2.71
814 920 7.173218 TGAGTTGGAAAATGTAGTCAGATGTTC 59.827 37.037 0.00 0.00 0.00 3.18
815 921 6.147821 AGTTGGAAAATGTAGTCAGATGTTCG 59.852 38.462 0.00 0.00 0.00 3.95
816 922 5.789521 TGGAAAATGTAGTCAGATGTTCGA 58.210 37.500 0.00 0.00 0.00 3.71
817 923 5.869344 TGGAAAATGTAGTCAGATGTTCGAG 59.131 40.000 0.00 0.00 0.00 4.04
818 924 5.292101 GGAAAATGTAGTCAGATGTTCGAGG 59.708 44.000 0.00 0.00 0.00 4.63
819 925 5.407407 AAATGTAGTCAGATGTTCGAGGT 57.593 39.130 0.00 0.00 0.00 3.85
820 926 6.525578 AAATGTAGTCAGATGTTCGAGGTA 57.474 37.500 0.00 0.00 0.00 3.08
821 927 4.959596 TGTAGTCAGATGTTCGAGGTAC 57.040 45.455 0.00 0.00 0.00 3.34
823 929 5.737860 TGTAGTCAGATGTTCGAGGTACTA 58.262 41.667 0.00 0.00 41.55 1.82
824 930 6.354938 TGTAGTCAGATGTTCGAGGTACTAT 58.645 40.000 0.00 0.00 41.55 2.12
825 931 7.503549 TGTAGTCAGATGTTCGAGGTACTATA 58.496 38.462 0.00 0.00 41.55 1.31
826 932 7.989170 TGTAGTCAGATGTTCGAGGTACTATAA 59.011 37.037 0.00 0.00 41.55 0.98
827 933 7.499321 AGTCAGATGTTCGAGGTACTATAAG 57.501 40.000 0.00 0.00 41.55 1.73
828 934 7.055378 AGTCAGATGTTCGAGGTACTATAAGT 58.945 38.462 0.00 0.00 41.55 2.24
829 935 7.012515 AGTCAGATGTTCGAGGTACTATAAGTG 59.987 40.741 0.00 0.00 41.55 3.16
830 936 7.012138 GTCAGATGTTCGAGGTACTATAAGTGA 59.988 40.741 0.00 0.00 41.55 3.41
831 937 7.720074 TCAGATGTTCGAGGTACTATAAGTGAT 59.280 37.037 0.00 0.00 41.55 3.06
832 938 8.018520 CAGATGTTCGAGGTACTATAAGTGATC 58.981 40.741 0.00 0.00 41.55 2.92
833 939 7.720074 AGATGTTCGAGGTACTATAAGTGATCA 59.280 37.037 0.00 0.00 41.55 2.92
834 940 7.634671 TGTTCGAGGTACTATAAGTGATCAA 57.365 36.000 0.00 0.00 41.55 2.57
835 941 7.704271 TGTTCGAGGTACTATAAGTGATCAAG 58.296 38.462 0.00 0.00 41.55 3.02
836 942 6.879276 TCGAGGTACTATAAGTGATCAAGG 57.121 41.667 0.00 0.00 41.55 3.61
837 943 5.768662 TCGAGGTACTATAAGTGATCAAGGG 59.231 44.000 0.00 0.00 41.55 3.95
838 944 5.047943 CGAGGTACTATAAGTGATCAAGGGG 60.048 48.000 0.00 0.00 41.55 4.79
839 945 5.789535 AGGTACTATAAGTGATCAAGGGGT 58.210 41.667 0.00 0.00 36.02 4.95
840 946 5.602978 AGGTACTATAAGTGATCAAGGGGTG 59.397 44.000 0.00 0.00 36.02 4.61
841 947 5.601313 GGTACTATAAGTGATCAAGGGGTGA 59.399 44.000 0.00 0.00 41.67 4.02
842 948 7.866073 AGGTACTATAAGTGATCAAGGGGTGAT 60.866 40.741 0.00 0.00 44.52 3.06
858 964 4.225267 GGGGTGATACCTCATATTACAGGG 59.775 50.000 0.00 0.00 39.07 4.45
861 967 5.187967 GGTGATACCTCATATTACAGGGGAG 59.812 48.000 0.00 0.00 34.73 4.30
867 973 7.707467 ACCTCATATTACAGGGGAGTAATTT 57.293 36.000 4.87 0.00 40.75 1.82
873 979 6.592207 ATTACAGGGGAGTAATTTAAGGCT 57.408 37.500 0.00 0.00 40.75 4.58
874 980 4.505324 ACAGGGGAGTAATTTAAGGCTC 57.495 45.455 0.00 0.00 0.00 4.70
880 986 3.064958 GGAGTAATTTAAGGCTCCGCAAC 59.935 47.826 0.00 0.00 38.22 4.17
891 997 2.200899 GCTCCGCAACAACAACAAAAT 58.799 42.857 0.00 0.00 0.00 1.82
895 1001 3.862267 TCCGCAACAACAACAAAATGAAG 59.138 39.130 0.00 0.00 0.00 3.02
896 1002 3.862267 CCGCAACAACAACAAAATGAAGA 59.138 39.130 0.00 0.00 0.00 2.87
897 1003 4.328440 CCGCAACAACAACAAAATGAAGAA 59.672 37.500 0.00 0.00 0.00 2.52
898 1004 5.247340 CGCAACAACAACAAAATGAAGAAC 58.753 37.500 0.00 0.00 0.00 3.01
899 1005 5.559227 GCAACAACAACAAAATGAAGAACC 58.441 37.500 0.00 0.00 0.00 3.62
900 1006 5.121454 GCAACAACAACAAAATGAAGAACCA 59.879 36.000 0.00 0.00 0.00 3.67
901 1007 6.348050 GCAACAACAACAAAATGAAGAACCAA 60.348 34.615 0.00 0.00 0.00 3.67
902 1008 7.579726 CAACAACAACAAAATGAAGAACCAAA 58.420 30.769 0.00 0.00 0.00 3.28
903 1009 7.736447 ACAACAACAAAATGAAGAACCAAAA 57.264 28.000 0.00 0.00 0.00 2.44
904 1010 8.334263 ACAACAACAAAATGAAGAACCAAAAT 57.666 26.923 0.00 0.00 0.00 1.82
905 1011 8.235905 ACAACAACAAAATGAAGAACCAAAATG 58.764 29.630 0.00 0.00 0.00 2.32
906 1012 8.449397 CAACAACAAAATGAAGAACCAAAATGA 58.551 29.630 0.00 0.00 0.00 2.57
914 1020 5.132502 TGAAGAACCAAAATGAAGAGCTGA 58.867 37.500 0.00 0.00 0.00 4.26
956 1062 3.496131 CGGGCGGTCGGAACATTG 61.496 66.667 0.00 0.00 0.00 2.82
957 1063 2.359478 GGGCGGTCGGAACATTGT 60.359 61.111 0.00 0.00 0.00 2.71
958 1064 1.969589 GGGCGGTCGGAACATTGTT 60.970 57.895 0.63 0.63 0.00 2.83
959 1065 1.209127 GGCGGTCGGAACATTGTTG 59.791 57.895 6.80 0.00 0.00 3.33
960 1066 1.209127 GCGGTCGGAACATTGTTGG 59.791 57.895 6.80 0.00 0.00 3.77
961 1067 1.209127 CGGTCGGAACATTGTTGGC 59.791 57.895 6.80 0.00 0.00 4.52
973 1079 2.511600 GTTGGCTCGATCCACCGG 60.512 66.667 7.67 0.00 35.50 5.28
981 1087 4.222847 GATCCACCGGGCTCGACC 62.223 72.222 8.08 0.00 39.00 4.79
982 1088 4.779733 ATCCACCGGGCTCGACCT 62.780 66.667 8.08 0.00 39.10 3.85
989 1095 3.519930 GGGCTCGACCTCGACCTC 61.520 72.222 12.83 0.00 44.22 3.85
990 1096 3.878519 GGCTCGACCTCGACCTCG 61.879 72.222 0.00 1.30 44.22 4.63
991 1097 2.818714 GCTCGACCTCGACCTCGA 60.819 66.667 8.88 8.88 44.22 4.04
1062 1190 2.279069 CCACGACACTCCCTCTGCT 61.279 63.158 0.00 0.00 0.00 4.24
1074 1202 3.242867 TCCCTCTGCTTCTTCTTCTTCA 58.757 45.455 0.00 0.00 0.00 3.02
1077 1205 3.864583 CCTCTGCTTCTTCTTCTTCATCG 59.135 47.826 0.00 0.00 0.00 3.84
1082 1210 3.990469 GCTTCTTCTTCTTCATCGACACA 59.010 43.478 0.00 0.00 0.00 3.72
1083 1211 4.143221 GCTTCTTCTTCTTCATCGACACAC 60.143 45.833 0.00 0.00 0.00 3.82
1088 1216 1.766069 TCTTCATCGACACACACACG 58.234 50.000 0.00 0.00 0.00 4.49
1090 1218 1.218875 TTCATCGACACACACACGCC 61.219 55.000 0.00 0.00 0.00 5.68
1092 1220 4.934942 TCGACACACACACGCCCG 62.935 66.667 0.00 0.00 0.00 6.13
1111 1239 3.475774 GCGTACCCAGTTGCGACG 61.476 66.667 0.00 0.00 36.62 5.12
1112 1240 3.475774 CGTACCCAGTTGCGACGC 61.476 66.667 14.19 14.19 0.00 5.19
1113 1241 3.116531 GTACCCAGTTGCGACGCC 61.117 66.667 18.69 2.18 0.00 5.68
1138 1266 3.838795 GCGCACGCAGTACCTTCG 61.839 66.667 10.65 0.00 41.61 3.79
1144 1272 1.290955 CGCAGTACCTTCGACCCAA 59.709 57.895 0.00 0.00 0.00 4.12
1145 1273 0.736325 CGCAGTACCTTCGACCCAAG 60.736 60.000 0.00 0.00 0.00 3.61
1146 1274 0.320697 GCAGTACCTTCGACCCAAGT 59.679 55.000 0.00 0.00 0.00 3.16
1147 1275 1.939838 GCAGTACCTTCGACCCAAGTG 60.940 57.143 0.00 0.00 0.00 3.16
1148 1276 0.320697 AGTACCTTCGACCCAAGTGC 59.679 55.000 0.00 0.00 0.00 4.40
1539 1729 1.435925 CCGGATTCCACGACGATGA 59.564 57.895 0.00 0.00 0.00 2.92
1545 1735 4.429212 CCACGACGATGACGCCCA 62.429 66.667 0.00 0.00 43.96 5.36
1548 1738 2.961721 CGACGATGACGCCCATGG 60.962 66.667 4.14 4.14 43.96 3.66
1675 1888 2.146342 AGGCAATATCTATGTGCACGC 58.854 47.619 13.13 5.68 40.12 5.34
1756 1993 6.986424 GCACCTGGCGATTAATTAATTAAC 57.014 37.500 20.21 13.74 35.31 2.01
1832 2079 7.499232 ACAGCCCTTTGAGTATGTTATTATGTC 59.501 37.037 0.00 0.00 0.00 3.06
1924 2186 4.737054 CATAGTTGGGTTGTCTCATTTGC 58.263 43.478 0.00 0.00 0.00 3.68
1938 2200 8.283699 TGTCTCATTTGCATCAATCAATCTAA 57.716 30.769 0.00 0.00 0.00 2.10
1952 2214 9.778741 TCAATCAATCTAACCATGTAATAGGAC 57.221 33.333 0.00 0.00 0.00 3.85
1954 2216 9.784531 AATCAATCTAACCATGTAATAGGACAG 57.215 33.333 0.00 0.00 31.51 3.51
1966 2228 9.436957 CATGTAATAGGACAGTAAAGAACAACT 57.563 33.333 0.00 0.00 31.51 3.16
1984 2246 9.221933 AGAACAACTAGTCCGATATATACTCAG 57.778 37.037 0.00 0.00 0.00 3.35
2085 2351 3.367600 CCAGTGCTACAACACCATACGTA 60.368 47.826 0.00 0.00 41.67 3.57
2086 2352 4.430007 CAGTGCTACAACACCATACGTAT 58.570 43.478 1.14 1.14 41.67 3.06
2087 2353 5.450826 CCAGTGCTACAACACCATACGTATA 60.451 44.000 7.96 0.00 41.67 1.47
2089 2355 6.143919 CAGTGCTACAACACCATACGTATATG 59.856 42.308 7.96 11.99 41.67 1.78
2090 2356 5.981315 GTGCTACAACACCATACGTATATGT 59.019 40.000 15.50 15.50 37.12 2.29
2092 2358 6.698329 TGCTACAACACCATACGTATATGTTC 59.302 38.462 24.22 17.20 37.12 3.18
2094 2360 7.114529 GCTACAACACCATACGTATATGTTCTC 59.885 40.741 24.22 14.56 37.12 2.87
2132 2398 5.420409 ACATAGAAGCAGCTTACTTACCAC 58.580 41.667 7.92 0.00 0.00 4.16
2176 2453 0.602638 GTCTGTCGTTGGGTGCATCA 60.603 55.000 0.00 0.00 0.00 3.07
2177 2454 0.107643 TCTGTCGTTGGGTGCATCAA 59.892 50.000 0.00 0.00 0.00 2.57
2178 2455 0.950836 CTGTCGTTGGGTGCATCAAA 59.049 50.000 0.00 0.00 0.00 2.69
2179 2456 0.950836 TGTCGTTGGGTGCATCAAAG 59.049 50.000 0.00 5.87 0.00 2.77
2180 2457 0.387239 GTCGTTGGGTGCATCAAAGC 60.387 55.000 0.00 0.00 0.00 3.51
2181 2458 1.080569 CGTTGGGTGCATCAAAGCC 60.081 57.895 0.00 0.00 35.69 4.35
2182 2459 1.080569 GTTGGGTGCATCAAAGCCG 60.081 57.895 0.00 0.00 38.05 5.52
2183 2460 1.228398 TTGGGTGCATCAAAGCCGA 60.228 52.632 0.00 0.00 38.05 5.54
2184 2461 0.611618 TTGGGTGCATCAAAGCCGAT 60.612 50.000 0.00 0.00 38.05 4.18
2185 2462 1.031571 TGGGTGCATCAAAGCCGATC 61.032 55.000 0.00 0.00 38.05 3.69
2186 2463 1.728490 GGGTGCATCAAAGCCGATCC 61.728 60.000 0.00 0.00 0.00 3.36
2187 2464 1.031571 GGTGCATCAAAGCCGATCCA 61.032 55.000 0.00 0.00 0.00 3.41
2188 2465 1.027357 GTGCATCAAAGCCGATCCAT 58.973 50.000 0.00 0.00 0.00 3.41
2189 2466 1.406539 GTGCATCAAAGCCGATCCATT 59.593 47.619 0.00 0.00 0.00 3.16
2190 2467 2.101783 TGCATCAAAGCCGATCCATTT 58.898 42.857 0.00 0.00 0.00 2.32
2191 2468 2.496871 TGCATCAAAGCCGATCCATTTT 59.503 40.909 0.00 0.00 0.00 1.82
2192 2469 3.055963 TGCATCAAAGCCGATCCATTTTT 60.056 39.130 0.00 0.00 0.00 1.94
2193 2470 3.307782 GCATCAAAGCCGATCCATTTTTG 59.692 43.478 0.00 0.00 0.00 2.44
2194 2471 2.958213 TCAAAGCCGATCCATTTTTGC 58.042 42.857 0.00 0.00 0.00 3.68
2195 2472 2.562298 TCAAAGCCGATCCATTTTTGCT 59.438 40.909 0.00 0.00 0.00 3.91
2196 2473 3.006752 TCAAAGCCGATCCATTTTTGCTT 59.993 39.130 0.00 0.00 40.50 3.91
2197 2474 2.660189 AGCCGATCCATTTTTGCTTG 57.340 45.000 0.00 0.00 0.00 4.01
2198 2475 1.205417 AGCCGATCCATTTTTGCTTGG 59.795 47.619 0.00 0.00 0.00 3.61
2199 2476 1.740043 GCCGATCCATTTTTGCTTGGG 60.740 52.381 0.00 0.00 33.62 4.12
2200 2477 1.643880 CGATCCATTTTTGCTTGGGC 58.356 50.000 0.00 0.00 39.26 5.36
2201 2478 1.643880 GATCCATTTTTGCTTGGGCG 58.356 50.000 0.00 0.00 42.25 6.13
2202 2479 0.391528 ATCCATTTTTGCTTGGGCGC 60.392 50.000 0.00 0.00 42.25 6.53
2203 2480 2.381967 CCATTTTTGCTTGGGCGCG 61.382 57.895 0.00 0.00 42.25 6.86
2204 2481 1.664333 CATTTTTGCTTGGGCGCGT 60.664 52.632 8.43 0.00 42.25 6.01
2205 2482 1.372872 ATTTTTGCTTGGGCGCGTC 60.373 52.632 8.43 4.38 42.25 5.19
2206 2483 1.805428 ATTTTTGCTTGGGCGCGTCT 61.805 50.000 11.94 0.00 42.25 4.18
2207 2484 2.400896 TTTTTGCTTGGGCGCGTCTC 62.401 55.000 11.94 1.28 42.25 3.36
2211 2488 3.764466 CTTGGGCGCGTCTCCTCT 61.764 66.667 11.94 0.00 0.00 3.69
2212 2489 3.302347 CTTGGGCGCGTCTCCTCTT 62.302 63.158 11.94 0.00 0.00 2.85
2213 2490 3.296709 TTGGGCGCGTCTCCTCTTC 62.297 63.158 11.94 0.00 0.00 2.87
2392 2680 6.461648 GCCTTGCTACTACACAGATCAGATAA 60.462 42.308 0.00 0.00 0.00 1.75
2416 2708 4.355437 CACCATGATCTGACTAGACGTTC 58.645 47.826 0.00 0.00 35.34 3.95
2424 2716 2.552743 CTGACTAGACGTTCACTCACCA 59.447 50.000 0.00 0.00 0.00 4.17
2439 2731 0.174617 CACCAAACAACGCCCAACTT 59.825 50.000 0.00 0.00 0.00 2.66
2456 2748 5.063204 CCAACTTGTCAATACTTGAGTGGA 58.937 41.667 0.00 0.00 41.01 4.02
2485 2777 4.794278 TGATCCACACATGTACGTACTT 57.206 40.909 25.12 16.95 0.00 2.24
2486 2778 5.900865 TGATCCACACATGTACGTACTTA 57.099 39.130 25.12 7.73 0.00 2.24
2487 2779 5.643664 TGATCCACACATGTACGTACTTAC 58.356 41.667 25.12 3.07 0.00 2.34
2521 2814 6.707161 AGCGATAAAAACCACAAGTTACTGTA 59.293 34.615 0.00 0.00 37.88 2.74
2611 2904 2.352651 GACAGCGATGGTACGTACACTA 59.647 50.000 26.02 12.70 35.59 2.74
2694 2987 2.029728 CCGAGATCAACGAAGACAATGC 59.970 50.000 12.59 0.00 0.00 3.56
2725 3018 1.293179 GTGGGCCATGCTCCAAAAC 59.707 57.895 10.70 0.00 32.52 2.43
2745 3038 2.151202 CGAGCAAAGGGAAAGCAGTAA 58.849 47.619 0.00 0.00 0.00 2.24
2746 3039 2.095718 CGAGCAAAGGGAAAGCAGTAAC 60.096 50.000 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.481954 ACTGTACAAATGATTTCTCGGTTC 57.518 37.500 0.00 0.00 0.00 3.62
1 2 6.090358 CGTACTGTACAAATGATTTCTCGGTT 59.910 38.462 17.35 0.00 0.00 4.44
2 3 5.575606 CGTACTGTACAAATGATTTCTCGGT 59.424 40.000 17.35 0.00 0.00 4.69
3 4 5.575606 ACGTACTGTACAAATGATTTCTCGG 59.424 40.000 17.35 0.00 0.00 4.63
4 5 6.527023 AGACGTACTGTACAAATGATTTCTCG 59.473 38.462 17.35 2.06 0.00 4.04
5 6 7.813852 AGACGTACTGTACAAATGATTTCTC 57.186 36.000 17.35 0.00 0.00 2.87
6 7 7.360101 GCAAGACGTACTGTACAAATGATTTCT 60.360 37.037 17.35 3.56 0.00 2.52
7 8 6.736853 GCAAGACGTACTGTACAAATGATTTC 59.263 38.462 17.35 1.64 0.00 2.17
8 9 6.426937 AGCAAGACGTACTGTACAAATGATTT 59.573 34.615 17.35 0.00 0.00 2.17
9 10 5.932303 AGCAAGACGTACTGTACAAATGATT 59.068 36.000 17.35 1.47 0.00 2.57
10 11 5.479306 AGCAAGACGTACTGTACAAATGAT 58.521 37.500 17.35 6.82 0.00 2.45
11 12 4.878439 AGCAAGACGTACTGTACAAATGA 58.122 39.130 17.35 0.00 0.00 2.57
12 13 5.050363 ACAAGCAAGACGTACTGTACAAATG 60.050 40.000 17.35 10.93 0.00 2.32
13 14 5.054477 ACAAGCAAGACGTACTGTACAAAT 58.946 37.500 17.35 2.77 0.00 2.32
14 15 4.435425 ACAAGCAAGACGTACTGTACAAA 58.565 39.130 17.35 0.00 0.00 2.83
15 16 4.049546 ACAAGCAAGACGTACTGTACAA 57.950 40.909 17.35 0.00 0.00 2.41
16 17 3.720949 ACAAGCAAGACGTACTGTACA 57.279 42.857 17.35 0.00 0.00 2.90
17 18 6.803320 TGTAATACAAGCAAGACGTACTGTAC 59.197 38.462 7.90 7.90 0.00 2.90
18 19 6.803320 GTGTAATACAAGCAAGACGTACTGTA 59.197 38.462 0.00 0.00 0.00 2.74
19 20 5.632347 GTGTAATACAAGCAAGACGTACTGT 59.368 40.000 0.00 0.00 0.00 3.55
20 21 5.219969 CGTGTAATACAAGCAAGACGTACTG 60.220 44.000 0.00 0.00 0.00 2.74
21 22 4.855388 CGTGTAATACAAGCAAGACGTACT 59.145 41.667 0.00 0.00 0.00 2.73
22 23 4.853196 TCGTGTAATACAAGCAAGACGTAC 59.147 41.667 1.45 0.00 31.38 3.67
23 24 5.045668 TCGTGTAATACAAGCAAGACGTA 57.954 39.130 1.45 0.00 31.38 3.57
24 25 3.904571 TCGTGTAATACAAGCAAGACGT 58.095 40.909 1.45 0.00 31.38 4.34
25 26 4.316446 CGATCGTGTAATACAAGCAAGACG 60.316 45.833 7.03 0.00 0.00 4.18
26 27 4.561606 ACGATCGTGTAATACAAGCAAGAC 59.438 41.667 22.06 0.00 0.00 3.01
27 28 4.740268 ACGATCGTGTAATACAAGCAAGA 58.260 39.130 22.06 0.00 0.00 3.02
28 29 5.248087 CAACGATCGTGTAATACAAGCAAG 58.752 41.667 23.51 0.00 0.00 4.01
29 30 4.092237 CCAACGATCGTGTAATACAAGCAA 59.908 41.667 23.51 0.00 0.00 3.91
30 31 3.615056 CCAACGATCGTGTAATACAAGCA 59.385 43.478 23.51 0.00 0.00 3.91
31 32 3.861113 TCCAACGATCGTGTAATACAAGC 59.139 43.478 23.51 0.00 0.00 4.01
32 33 6.292168 GGATTCCAACGATCGTGTAATACAAG 60.292 42.308 23.51 0.00 0.00 3.16
33 34 5.521010 GGATTCCAACGATCGTGTAATACAA 59.479 40.000 23.51 8.33 0.00 2.41
34 35 5.045215 GGATTCCAACGATCGTGTAATACA 58.955 41.667 23.51 2.86 0.00 2.29
35 36 5.045215 TGGATTCCAACGATCGTGTAATAC 58.955 41.667 23.51 20.44 0.00 1.89
36 37 5.163488 ACTGGATTCCAACGATCGTGTAATA 60.163 40.000 23.51 7.15 30.80 0.98
37 38 4.119862 CTGGATTCCAACGATCGTGTAAT 58.880 43.478 23.51 19.92 30.80 1.89
38 39 3.056393 ACTGGATTCCAACGATCGTGTAA 60.056 43.478 23.51 16.13 30.80 2.41
39 40 2.494471 ACTGGATTCCAACGATCGTGTA 59.506 45.455 23.51 7.46 30.80 2.90
40 41 1.275291 ACTGGATTCCAACGATCGTGT 59.725 47.619 23.51 8.92 30.80 4.49
41 42 2.010145 ACTGGATTCCAACGATCGTG 57.990 50.000 23.51 15.30 30.80 4.35
42 43 4.558898 GCTATACTGGATTCCAACGATCGT 60.559 45.833 16.60 16.60 30.80 3.73
43 44 3.921021 GCTATACTGGATTCCAACGATCG 59.079 47.826 14.88 14.88 30.80 3.69
44 45 4.686554 GTGCTATACTGGATTCCAACGATC 59.313 45.833 6.88 0.00 30.80 3.69
45 46 4.100963 TGTGCTATACTGGATTCCAACGAT 59.899 41.667 6.88 3.24 30.80 3.73
46 47 3.449377 TGTGCTATACTGGATTCCAACGA 59.551 43.478 6.88 0.00 30.80 3.85
47 48 3.792401 TGTGCTATACTGGATTCCAACG 58.208 45.455 6.88 0.00 30.80 4.10
48 49 4.449068 CGATGTGCTATACTGGATTCCAAC 59.551 45.833 6.88 0.78 30.80 3.77
70 71 2.293677 TCAATTGATCCAGTCGGTCG 57.706 50.000 3.38 0.00 0.00 4.79
84 85 5.732528 GCAGCTTCATTCGTCATCATCAATT 60.733 40.000 0.00 0.00 0.00 2.32
87 88 2.610833 GCAGCTTCATTCGTCATCATCA 59.389 45.455 0.00 0.00 0.00 3.07
100 101 2.799562 CGTAATCGATCTGGCAGCTTCA 60.800 50.000 10.34 0.00 39.71 3.02
108 109 6.475727 ACATTAAGTTGACGTAATCGATCTGG 59.524 38.462 0.00 0.00 40.62 3.86
114 125 5.549548 CGACGACATTAAGTTGACGTAATCG 60.550 44.000 6.57 9.59 45.30 3.34
141 152 0.386858 CGTCGACGGTTCATGTCTGT 60.387 55.000 29.70 0.00 34.17 3.41
153 164 1.371758 CTCATATGGCCCGTCGACG 60.372 63.158 30.33 30.33 39.44 5.12
154 165 0.603569 ATCTCATATGGCCCGTCGAC 59.396 55.000 5.18 5.18 0.00 4.20
155 166 1.816835 GTATCTCATATGGCCCGTCGA 59.183 52.381 0.00 0.00 0.00 4.20
156 167 1.467543 CGTATCTCATATGGCCCGTCG 60.468 57.143 0.00 0.00 0.00 5.12
157 168 1.736032 GCGTATCTCATATGGCCCGTC 60.736 57.143 0.00 0.00 0.00 4.79
158 169 0.246635 GCGTATCTCATATGGCCCGT 59.753 55.000 0.00 0.00 0.00 5.28
159 170 0.246360 TGCGTATCTCATATGGCCCG 59.754 55.000 0.00 0.00 0.00 6.13
160 171 1.550524 TCTGCGTATCTCATATGGCCC 59.449 52.381 0.00 0.00 0.00 5.80
161 172 3.319137 TTCTGCGTATCTCATATGGCC 57.681 47.619 2.13 0.00 0.00 5.36
162 173 4.931601 TCATTTCTGCGTATCTCATATGGC 59.068 41.667 2.13 0.00 0.00 4.40
163 174 5.928264 TGTCATTTCTGCGTATCTCATATGG 59.072 40.000 2.13 0.00 0.00 2.74
164 175 6.090493 CCTGTCATTTCTGCGTATCTCATATG 59.910 42.308 0.00 0.00 0.00 1.78
165 176 6.015095 TCCTGTCATTTCTGCGTATCTCATAT 60.015 38.462 0.00 0.00 0.00 1.78
166 177 5.301805 TCCTGTCATTTCTGCGTATCTCATA 59.698 40.000 0.00 0.00 0.00 2.15
167 178 4.100035 TCCTGTCATTTCTGCGTATCTCAT 59.900 41.667 0.00 0.00 0.00 2.90
168 179 3.447229 TCCTGTCATTTCTGCGTATCTCA 59.553 43.478 0.00 0.00 0.00 3.27
169 180 3.799420 GTCCTGTCATTTCTGCGTATCTC 59.201 47.826 0.00 0.00 0.00 2.75
181 192 2.532531 CGTACGTACGTCCTGTCATT 57.467 50.000 33.95 0.00 44.13 2.57
193 204 1.134128 TCATCTGGGCCTACGTACGTA 60.134 52.381 25.41 25.41 0.00 3.57
194 205 0.394762 TCATCTGGGCCTACGTACGT 60.395 55.000 25.98 25.98 0.00 3.57
195 206 0.742505 TTCATCTGGGCCTACGTACG 59.257 55.000 15.01 15.01 0.00 3.67
198 209 0.537188 CACTTCATCTGGGCCTACGT 59.463 55.000 4.53 0.00 0.00 3.57
208 219 3.136443 TGACCAACCACTTCACTTCATCT 59.864 43.478 0.00 0.00 0.00 2.90
210 221 3.576078 TGACCAACCACTTCACTTCAT 57.424 42.857 0.00 0.00 0.00 2.57
219 230 0.319083 TCGCGTAATGACCAACCACT 59.681 50.000 5.77 0.00 0.00 4.00
225 236 1.447140 GGTGCTCGCGTAATGACCA 60.447 57.895 5.77 0.00 0.00 4.02
228 239 1.515519 GTCGGTGCTCGCGTAATGA 60.516 57.895 5.77 0.00 39.05 2.57
229 240 1.348538 TTGTCGGTGCTCGCGTAATG 61.349 55.000 5.77 0.00 39.05 1.90
237 248 3.084579 CATCGCTTGTCGGTGCTC 58.915 61.111 0.00 0.00 42.91 4.26
241 252 2.480853 TACGTGCATCGCTTGTCGGT 62.481 55.000 0.00 0.00 44.19 4.69
247 258 0.456221 AGCTAGTACGTGCATCGCTT 59.544 50.000 6.38 0.00 44.19 4.68
249 260 0.029567 AGAGCTAGTACGTGCATCGC 59.970 55.000 6.38 5.11 44.19 4.58
250 261 1.598183 CCAGAGCTAGTACGTGCATCG 60.598 57.143 6.38 7.07 46.00 3.84
251 262 1.866063 GCCAGAGCTAGTACGTGCATC 60.866 57.143 6.38 9.08 35.50 3.91
252 263 0.103208 GCCAGAGCTAGTACGTGCAT 59.897 55.000 6.38 0.00 35.50 3.96
253 264 1.511305 GCCAGAGCTAGTACGTGCA 59.489 57.895 6.38 0.00 35.50 4.57
254 265 4.403976 GCCAGAGCTAGTACGTGC 57.596 61.111 0.00 0.00 35.50 5.34
302 313 0.314302 GTGCCAGTACAGTGACGACT 59.686 55.000 0.00 0.00 0.00 4.18
311 322 0.036105 CCTGATGCAGTGCCAGTACA 60.036 55.000 13.72 4.81 0.00 2.90
318 335 2.609427 TCTCATACCTGATGCAGTGC 57.391 50.000 8.58 8.58 35.29 4.40
390 424 1.244816 ACGTACTGTACTCAGCTGCA 58.755 50.000 9.47 0.00 44.77 4.41
417 451 0.250901 GAACACCCATGTGCAGGAGT 60.251 55.000 0.00 0.00 46.86 3.85
418 452 0.250858 TGAACACCCATGTGCAGGAG 60.251 55.000 0.00 0.00 46.86 3.69
419 453 1.842714 TGAACACCCATGTGCAGGA 59.157 52.632 0.00 0.00 46.86 3.86
420 454 4.498346 TGAACACCCATGTGCAGG 57.502 55.556 0.00 0.00 46.86 4.85
422 456 0.537143 GGACTGAACACCCATGTGCA 60.537 55.000 0.00 0.00 46.86 4.57
423 457 0.537143 TGGACTGAACACCCATGTGC 60.537 55.000 0.00 0.00 46.86 4.57
424 458 6.341127 CACATTGGACTGAACACCCATGTG 62.341 50.000 13.19 13.19 46.14 3.21
425 459 2.158475 ACATTGGACTGAACACCCATGT 60.158 45.455 0.00 0.00 42.46 3.21
426 460 2.229543 CACATTGGACTGAACACCCATG 59.770 50.000 0.00 0.00 36.03 3.66
427 461 2.158475 ACACATTGGACTGAACACCCAT 60.158 45.455 0.00 0.00 0.00 4.00
428 462 1.214175 ACACATTGGACTGAACACCCA 59.786 47.619 0.00 0.00 0.00 4.51
429 463 1.608590 CACACATTGGACTGAACACCC 59.391 52.381 0.00 0.00 0.00 4.61
430 464 2.297701 ACACACATTGGACTGAACACC 58.702 47.619 0.00 0.00 0.00 4.16
431 465 4.554723 GCTAACACACATTGGACTGAACAC 60.555 45.833 0.00 0.00 0.00 3.32
436 470 2.413112 CGAGCTAACACACATTGGACTG 59.587 50.000 0.00 0.00 0.00 3.51
457 491 3.003585 TGGATACATGCATGCGACAAATC 59.996 43.478 26.53 17.17 46.17 2.17
478 520 1.006102 GCCGGACGGTATCTCCATG 60.006 63.158 5.05 0.00 37.65 3.66
500 542 7.393216 ACGAGTAGTAGGAGTATATTACCAGG 58.607 42.308 0.00 0.00 0.00 4.45
501 543 9.935241 TTACGAGTAGTAGGAGTATATTACCAG 57.065 37.037 0.00 0.00 36.56 4.00
511 553 8.901793 CCTAGAAAAATTACGAGTAGTAGGAGT 58.098 37.037 0.00 0.00 36.56 3.85
512 554 9.118300 TCCTAGAAAAATTACGAGTAGTAGGAG 57.882 37.037 0.00 0.00 36.56 3.69
513 555 9.118300 CTCCTAGAAAAATTACGAGTAGTAGGA 57.882 37.037 0.00 0.00 36.56 2.94
514 556 8.901793 ACTCCTAGAAAAATTACGAGTAGTAGG 58.098 37.037 0.00 0.00 36.56 3.18
579 685 8.245491 TGAGTACGTACTACTGCATGAAAATAA 58.755 33.333 27.44 0.00 35.66 1.40
581 687 6.627243 TGAGTACGTACTACTGCATGAAAAT 58.373 36.000 27.44 0.96 35.66 1.82
597 703 9.498176 ACCTTTCAAAAGTATTAATGAGTACGT 57.502 29.630 0.00 0.00 34.20 3.57
611 717 9.191995 CGAGCAAATAAAATACCTTTCAAAAGT 57.808 29.630 2.09 0.00 34.20 2.66
612 718 8.647226 CCGAGCAAATAAAATACCTTTCAAAAG 58.353 33.333 0.00 0.00 35.79 2.27
613 719 8.361139 TCCGAGCAAATAAAATACCTTTCAAAA 58.639 29.630 0.00 0.00 0.00 2.44
614 720 7.887381 TCCGAGCAAATAAAATACCTTTCAAA 58.113 30.769 0.00 0.00 0.00 2.69
615 721 7.175990 ACTCCGAGCAAATAAAATACCTTTCAA 59.824 33.333 0.00 0.00 0.00 2.69
616 722 6.657541 ACTCCGAGCAAATAAAATACCTTTCA 59.342 34.615 0.00 0.00 0.00 2.69
617 723 7.085052 ACTCCGAGCAAATAAAATACCTTTC 57.915 36.000 0.00 0.00 0.00 2.62
618 724 7.362660 GGAACTCCGAGCAAATAAAATACCTTT 60.363 37.037 0.00 0.00 0.00 3.11
619 725 6.095021 GGAACTCCGAGCAAATAAAATACCTT 59.905 38.462 0.00 0.00 0.00 3.50
620 726 5.589050 GGAACTCCGAGCAAATAAAATACCT 59.411 40.000 0.00 0.00 0.00 3.08
621 727 5.589050 AGGAACTCCGAGCAAATAAAATACC 59.411 40.000 0.00 0.00 42.08 2.73
622 728 6.093633 ACAGGAACTCCGAGCAAATAAAATAC 59.906 38.462 0.00 0.00 42.08 1.89
623 729 6.177610 ACAGGAACTCCGAGCAAATAAAATA 58.822 36.000 0.00 0.00 42.08 1.40
624 730 5.010282 ACAGGAACTCCGAGCAAATAAAAT 58.990 37.500 0.00 0.00 42.08 1.82
625 731 4.394729 ACAGGAACTCCGAGCAAATAAAA 58.605 39.130 0.00 0.00 42.08 1.52
626 732 4.015872 ACAGGAACTCCGAGCAAATAAA 57.984 40.909 0.00 0.00 42.08 1.40
627 733 3.695830 ACAGGAACTCCGAGCAAATAA 57.304 42.857 0.00 0.00 42.08 1.40
628 734 3.132289 CCTACAGGAACTCCGAGCAAATA 59.868 47.826 0.00 0.00 42.08 1.40
629 735 2.093447 CCTACAGGAACTCCGAGCAAAT 60.093 50.000 0.00 0.00 42.08 2.32
630 736 1.275291 CCTACAGGAACTCCGAGCAAA 59.725 52.381 0.00 0.00 42.08 3.68
631 737 0.895530 CCTACAGGAACTCCGAGCAA 59.104 55.000 0.00 0.00 42.08 3.91
632 738 0.251653 ACCTACAGGAACTCCGAGCA 60.252 55.000 1.29 0.00 42.08 4.26
633 739 0.896226 AACCTACAGGAACTCCGAGC 59.104 55.000 1.29 0.00 42.08 5.03
634 740 2.426381 GGTAACCTACAGGAACTCCGAG 59.574 54.545 1.29 0.00 42.08 4.63
635 741 2.042162 AGGTAACCTACAGGAACTCCGA 59.958 50.000 1.29 0.00 38.94 4.55
636 742 2.165845 CAGGTAACCTACAGGAACTCCG 59.834 54.545 1.29 0.00 38.94 4.63
637 743 3.438183 TCAGGTAACCTACAGGAACTCC 58.562 50.000 1.29 0.00 38.94 3.85
638 744 6.786967 TTATCAGGTAACCTACAGGAACTC 57.213 41.667 1.29 0.00 38.94 3.01
639 745 6.351966 GCTTTATCAGGTAACCTACAGGAACT 60.352 42.308 1.29 0.00 38.94 3.01
640 746 5.816258 GCTTTATCAGGTAACCTACAGGAAC 59.184 44.000 1.29 0.00 38.94 3.62
641 747 5.486063 TGCTTTATCAGGTAACCTACAGGAA 59.514 40.000 1.29 0.00 38.94 3.36
642 748 5.027460 TGCTTTATCAGGTAACCTACAGGA 58.973 41.667 1.29 0.00 38.94 3.86
643 749 5.353394 TGCTTTATCAGGTAACCTACAGG 57.647 43.478 0.00 0.00 42.17 4.00
644 750 7.770897 AGATTTGCTTTATCAGGTAACCTACAG 59.229 37.037 0.00 0.00 29.64 2.74
645 751 7.630082 AGATTTGCTTTATCAGGTAACCTACA 58.370 34.615 0.00 0.00 29.64 2.74
646 752 9.262358 CTAGATTTGCTTTATCAGGTAACCTAC 57.738 37.037 0.00 0.00 29.64 3.18
647 753 8.429641 CCTAGATTTGCTTTATCAGGTAACCTA 58.570 37.037 0.00 0.00 29.64 3.08
648 754 7.092399 ACCTAGATTTGCTTTATCAGGTAACCT 60.092 37.037 0.00 0.00 34.59 3.50
649 755 7.054751 ACCTAGATTTGCTTTATCAGGTAACC 58.945 38.462 0.00 0.00 34.59 2.85
650 756 8.507524 AACCTAGATTTGCTTTATCAGGTAAC 57.492 34.615 0.00 0.00 34.93 2.50
651 757 9.528489 AAAACCTAGATTTGCTTTATCAGGTAA 57.472 29.630 0.00 0.00 34.93 2.85
652 758 9.528489 AAAAACCTAGATTTGCTTTATCAGGTA 57.472 29.630 0.00 0.00 34.93 3.08
653 759 8.422577 AAAAACCTAGATTTGCTTTATCAGGT 57.577 30.769 0.00 0.00 36.23 4.00
654 760 7.976175 GGAAAAACCTAGATTTGCTTTATCAGG 59.024 37.037 0.00 0.00 35.41 3.86
655 761 8.917415 GGAAAAACCTAGATTTGCTTTATCAG 57.083 34.615 0.00 0.00 35.41 2.90
672 778 3.006859 CCATCACAGGGAAAGGAAAAACC 59.993 47.826 0.00 0.00 39.35 3.27
673 779 3.895041 TCCATCACAGGGAAAGGAAAAAC 59.105 43.478 0.00 0.00 32.66 2.43
674 780 3.895041 GTCCATCACAGGGAAAGGAAAAA 59.105 43.478 0.00 0.00 36.07 1.94
675 781 3.496331 GTCCATCACAGGGAAAGGAAAA 58.504 45.455 0.00 0.00 36.07 2.29
676 782 2.225017 GGTCCATCACAGGGAAAGGAAA 60.225 50.000 0.00 0.00 36.07 3.13
677 783 1.354368 GGTCCATCACAGGGAAAGGAA 59.646 52.381 0.00 0.00 36.07 3.36
678 784 0.991920 GGTCCATCACAGGGAAAGGA 59.008 55.000 0.00 0.00 35.88 3.36
679 785 0.392998 CGGTCCATCACAGGGAAAGG 60.393 60.000 0.00 0.00 35.88 3.11
680 786 0.613260 TCGGTCCATCACAGGGAAAG 59.387 55.000 0.00 0.00 35.88 2.62
681 787 0.613260 CTCGGTCCATCACAGGGAAA 59.387 55.000 0.00 0.00 35.88 3.13
682 788 1.264749 CCTCGGTCCATCACAGGGAA 61.265 60.000 0.00 0.00 35.88 3.97
683 789 1.685765 CCTCGGTCCATCACAGGGA 60.686 63.158 0.00 0.00 0.00 4.20
684 790 2.735772 CCCTCGGTCCATCACAGGG 61.736 68.421 0.00 0.00 38.07 4.45
685 791 2.735772 CCCCTCGGTCCATCACAGG 61.736 68.421 0.00 0.00 0.00 4.00
686 792 2.735772 CCCCCTCGGTCCATCACAG 61.736 68.421 0.00 0.00 0.00 3.66
687 793 2.687200 CCCCCTCGGTCCATCACA 60.687 66.667 0.00 0.00 0.00 3.58
688 794 1.993391 TTCCCCCTCGGTCCATCAC 60.993 63.158 0.00 0.00 0.00 3.06
689 795 1.993391 GTTCCCCCTCGGTCCATCA 60.993 63.158 0.00 0.00 0.00 3.07
690 796 1.345715 ATGTTCCCCCTCGGTCCATC 61.346 60.000 0.00 0.00 0.00 3.51
691 797 1.307866 ATGTTCCCCCTCGGTCCAT 60.308 57.895 0.00 0.00 0.00 3.41
692 798 2.124085 ATGTTCCCCCTCGGTCCA 59.876 61.111 0.00 0.00 0.00 4.02
693 799 2.253403 GACATGTTCCCCCTCGGTCC 62.253 65.000 0.00 0.00 0.00 4.46
694 800 1.221021 GACATGTTCCCCCTCGGTC 59.779 63.158 0.00 0.00 0.00 4.79
695 801 1.131303 TTGACATGTTCCCCCTCGGT 61.131 55.000 0.00 0.00 0.00 4.69
696 802 0.392998 CTTGACATGTTCCCCCTCGG 60.393 60.000 0.00 0.00 0.00 4.63
697 803 0.324943 ACTTGACATGTTCCCCCTCG 59.675 55.000 0.00 0.00 0.00 4.63
698 804 3.713826 TTACTTGACATGTTCCCCCTC 57.286 47.619 0.00 0.00 0.00 4.30
699 805 3.852578 AGATTACTTGACATGTTCCCCCT 59.147 43.478 0.00 0.00 0.00 4.79
700 806 4.236527 AGATTACTTGACATGTTCCCCC 57.763 45.455 0.00 0.00 0.00 5.40
701 807 6.389906 CAAAAGATTACTTGACATGTTCCCC 58.610 40.000 0.00 0.00 36.39 4.81
702 808 6.389906 CCAAAAGATTACTTGACATGTTCCC 58.610 40.000 0.00 0.00 36.39 3.97
703 809 6.208599 TCCCAAAAGATTACTTGACATGTTCC 59.791 38.462 0.00 0.00 36.39 3.62
704 810 7.214467 TCCCAAAAGATTACTTGACATGTTC 57.786 36.000 0.00 0.00 36.39 3.18
705 811 7.451255 TGATCCCAAAAGATTACTTGACATGTT 59.549 33.333 0.00 0.00 36.39 2.71
706 812 6.947733 TGATCCCAAAAGATTACTTGACATGT 59.052 34.615 0.00 0.00 36.39 3.21
707 813 7.395190 TGATCCCAAAAGATTACTTGACATG 57.605 36.000 0.00 0.00 36.39 3.21
708 814 7.616935 ACATGATCCCAAAAGATTACTTGACAT 59.383 33.333 0.00 0.00 36.39 3.06
709 815 6.947733 ACATGATCCCAAAAGATTACTTGACA 59.052 34.615 0.00 0.00 36.39 3.58
710 816 7.396540 ACATGATCCCAAAAGATTACTTGAC 57.603 36.000 0.00 0.00 36.39 3.18
711 817 8.421249 AAACATGATCCCAAAAGATTACTTGA 57.579 30.769 0.00 0.00 36.39 3.02
712 818 9.143631 GAAAACATGATCCCAAAAGATTACTTG 57.856 33.333 0.00 0.00 36.39 3.16
713 819 9.093458 AGAAAACATGATCCCAAAAGATTACTT 57.907 29.630 0.00 0.00 38.05 2.24
714 820 8.655935 AGAAAACATGATCCCAAAAGATTACT 57.344 30.769 0.00 0.00 0.00 2.24
717 823 9.880157 CATAAGAAAACATGATCCCAAAAGATT 57.120 29.630 0.00 0.00 0.00 2.40
718 824 9.039165 ACATAAGAAAACATGATCCCAAAAGAT 57.961 29.630 0.00 0.00 0.00 2.40
719 825 8.421249 ACATAAGAAAACATGATCCCAAAAGA 57.579 30.769 0.00 0.00 0.00 2.52
720 826 9.492973 AAACATAAGAAAACATGATCCCAAAAG 57.507 29.630 0.00 0.00 0.00 2.27
760 866 9.651913 ATGAAAAATAACTACCGAAATTGCATT 57.348 25.926 0.00 0.00 0.00 3.56
761 867 9.086336 CATGAAAAATAACTACCGAAATTGCAT 57.914 29.630 0.00 0.00 0.00 3.96
762 868 8.085296 ACATGAAAAATAACTACCGAAATTGCA 58.915 29.630 0.00 0.00 0.00 4.08
763 869 8.372521 CACATGAAAAATAACTACCGAAATTGC 58.627 33.333 0.00 0.00 0.00 3.56
764 870 9.619316 TCACATGAAAAATAACTACCGAAATTG 57.381 29.630 0.00 0.00 0.00 2.32
765 871 9.840427 CTCACATGAAAAATAACTACCGAAATT 57.160 29.630 0.00 0.00 0.00 1.82
766 872 9.010029 ACTCACATGAAAAATAACTACCGAAAT 57.990 29.630 0.00 0.00 0.00 2.17
767 873 8.385898 ACTCACATGAAAAATAACTACCGAAA 57.614 30.769 0.00 0.00 0.00 3.46
768 874 7.972832 ACTCACATGAAAAATAACTACCGAA 57.027 32.000 0.00 0.00 0.00 4.30
769 875 7.094975 CCAACTCACATGAAAAATAACTACCGA 60.095 37.037 0.00 0.00 0.00 4.69
770 876 7.021196 CCAACTCACATGAAAAATAACTACCG 58.979 38.462 0.00 0.00 0.00 4.02
771 877 8.106247 TCCAACTCACATGAAAAATAACTACC 57.894 34.615 0.00 0.00 0.00 3.18
772 878 9.959749 TTTCCAACTCACATGAAAAATAACTAC 57.040 29.630 0.00 0.00 0.00 2.73
776 882 9.829507 ACATTTTCCAACTCACATGAAAAATAA 57.170 25.926 0.00 0.00 39.37 1.40
778 884 9.480053 CTACATTTTCCAACTCACATGAAAAAT 57.520 29.630 0.00 0.00 39.37 1.82
779 885 8.474025 ACTACATTTTCCAACTCACATGAAAAA 58.526 29.630 0.00 0.00 39.37 1.94
780 886 8.006298 ACTACATTTTCCAACTCACATGAAAA 57.994 30.769 0.00 0.00 39.99 2.29
781 887 7.284261 TGACTACATTTTCCAACTCACATGAAA 59.716 33.333 0.00 0.00 0.00 2.69
782 888 6.770303 TGACTACATTTTCCAACTCACATGAA 59.230 34.615 0.00 0.00 0.00 2.57
783 889 6.295249 TGACTACATTTTCCAACTCACATGA 58.705 36.000 0.00 0.00 0.00 3.07
784 890 6.427853 TCTGACTACATTTTCCAACTCACATG 59.572 38.462 0.00 0.00 0.00 3.21
785 891 6.533730 TCTGACTACATTTTCCAACTCACAT 58.466 36.000 0.00 0.00 0.00 3.21
786 892 5.924356 TCTGACTACATTTTCCAACTCACA 58.076 37.500 0.00 0.00 0.00 3.58
787 893 6.428159 ACATCTGACTACATTTTCCAACTCAC 59.572 38.462 0.00 0.00 0.00 3.51
788 894 6.533730 ACATCTGACTACATTTTCCAACTCA 58.466 36.000 0.00 0.00 0.00 3.41
789 895 7.440523 AACATCTGACTACATTTTCCAACTC 57.559 36.000 0.00 0.00 0.00 3.01
790 896 6.147821 CGAACATCTGACTACATTTTCCAACT 59.852 38.462 0.00 0.00 0.00 3.16
791 897 6.147164 TCGAACATCTGACTACATTTTCCAAC 59.853 38.462 0.00 0.00 0.00 3.77
792 898 6.227522 TCGAACATCTGACTACATTTTCCAA 58.772 36.000 0.00 0.00 0.00 3.53
793 899 5.789521 TCGAACATCTGACTACATTTTCCA 58.210 37.500 0.00 0.00 0.00 3.53
794 900 5.292101 CCTCGAACATCTGACTACATTTTCC 59.708 44.000 0.00 0.00 0.00 3.13
795 901 5.869888 ACCTCGAACATCTGACTACATTTTC 59.130 40.000 0.00 0.00 0.00 2.29
796 902 5.794894 ACCTCGAACATCTGACTACATTTT 58.205 37.500 0.00 0.00 0.00 1.82
797 903 5.407407 ACCTCGAACATCTGACTACATTT 57.593 39.130 0.00 0.00 0.00 2.32
798 904 5.652891 AGTACCTCGAACATCTGACTACATT 59.347 40.000 0.00 0.00 0.00 2.71
799 905 5.194432 AGTACCTCGAACATCTGACTACAT 58.806 41.667 0.00 0.00 0.00 2.29
800 906 4.586884 AGTACCTCGAACATCTGACTACA 58.413 43.478 0.00 0.00 0.00 2.74
801 907 6.864360 ATAGTACCTCGAACATCTGACTAC 57.136 41.667 0.00 0.00 0.00 2.73
802 908 8.209584 ACTTATAGTACCTCGAACATCTGACTA 58.790 37.037 0.00 0.00 0.00 2.59
803 909 7.012515 CACTTATAGTACCTCGAACATCTGACT 59.987 40.741 0.00 0.00 0.00 3.41
804 910 7.012138 TCACTTATAGTACCTCGAACATCTGAC 59.988 40.741 0.00 0.00 0.00 3.51
805 911 7.052248 TCACTTATAGTACCTCGAACATCTGA 58.948 38.462 0.00 0.00 0.00 3.27
806 912 7.260558 TCACTTATAGTACCTCGAACATCTG 57.739 40.000 0.00 0.00 0.00 2.90
807 913 7.720074 TGATCACTTATAGTACCTCGAACATCT 59.280 37.037 0.00 0.00 0.00 2.90
808 914 7.872881 TGATCACTTATAGTACCTCGAACATC 58.127 38.462 0.00 0.00 0.00 3.06
809 915 7.818997 TGATCACTTATAGTACCTCGAACAT 57.181 36.000 0.00 0.00 0.00 2.71
810 916 7.201794 CCTTGATCACTTATAGTACCTCGAACA 60.202 40.741 0.00 0.00 0.00 3.18
811 917 7.140048 CCTTGATCACTTATAGTACCTCGAAC 58.860 42.308 0.00 0.00 0.00 3.95
812 918 6.264744 CCCTTGATCACTTATAGTACCTCGAA 59.735 42.308 0.00 0.00 0.00 3.71
813 919 5.768662 CCCTTGATCACTTATAGTACCTCGA 59.231 44.000 0.00 0.00 0.00 4.04
814 920 5.047943 CCCCTTGATCACTTATAGTACCTCG 60.048 48.000 0.00 0.00 0.00 4.63
815 921 5.839606 ACCCCTTGATCACTTATAGTACCTC 59.160 44.000 0.00 0.00 0.00 3.85
816 922 5.602978 CACCCCTTGATCACTTATAGTACCT 59.397 44.000 0.00 0.00 0.00 3.08
817 923 5.601313 TCACCCCTTGATCACTTATAGTACC 59.399 44.000 0.00 0.00 0.00 3.34
818 924 6.726490 TCACCCCTTGATCACTTATAGTAC 57.274 41.667 0.00 0.00 0.00 2.73
819 925 7.453752 GGTATCACCCCTTGATCACTTATAGTA 59.546 40.741 0.00 0.00 41.53 1.82
820 926 6.270231 GGTATCACCCCTTGATCACTTATAGT 59.730 42.308 0.00 0.00 41.53 2.12
821 927 6.498651 AGGTATCACCCCTTGATCACTTATAG 59.501 42.308 0.00 0.00 41.53 1.31
822 928 6.390504 AGGTATCACCCCTTGATCACTTATA 58.609 40.000 0.00 0.00 41.53 0.98
823 929 5.227593 AGGTATCACCCCTTGATCACTTAT 58.772 41.667 0.00 0.00 41.53 1.73
824 930 4.631234 AGGTATCACCCCTTGATCACTTA 58.369 43.478 0.00 0.00 41.53 2.24
825 931 3.456277 GAGGTATCACCCCTTGATCACTT 59.544 47.826 0.00 0.00 41.53 3.16
826 932 3.041946 GAGGTATCACCCCTTGATCACT 58.958 50.000 0.00 0.00 41.53 3.41
827 933 2.771943 TGAGGTATCACCCCTTGATCAC 59.228 50.000 0.00 0.00 41.53 3.06
828 934 3.129262 TGAGGTATCACCCCTTGATCA 57.871 47.619 0.00 0.00 41.53 2.92
829 935 6.380079 AATATGAGGTATCACCCCTTGATC 57.620 41.667 0.00 0.00 41.53 2.92
831 937 6.147473 TGTAATATGAGGTATCACCCCTTGA 58.853 40.000 0.00 0.00 39.75 3.02
832 938 6.433847 TGTAATATGAGGTATCACCCCTTG 57.566 41.667 0.00 0.00 39.75 3.61
833 939 5.548056 CCTGTAATATGAGGTATCACCCCTT 59.452 44.000 0.00 0.00 39.75 3.95
834 940 5.094387 CCTGTAATATGAGGTATCACCCCT 58.906 45.833 0.00 0.00 39.75 4.79
835 941 4.225267 CCCTGTAATATGAGGTATCACCCC 59.775 50.000 0.00 0.00 39.75 4.95
836 942 4.225267 CCCCTGTAATATGAGGTATCACCC 59.775 50.000 0.00 0.00 39.75 4.61
837 943 5.091552 TCCCCTGTAATATGAGGTATCACC 58.908 45.833 0.00 0.00 38.57 4.02
838 944 5.780793 ACTCCCCTGTAATATGAGGTATCAC 59.219 44.000 0.00 0.00 38.57 3.06
839 945 5.977533 ACTCCCCTGTAATATGAGGTATCA 58.022 41.667 0.00 0.00 40.50 2.15
840 946 8.611051 ATTACTCCCCTGTAATATGAGGTATC 57.389 38.462 0.00 0.00 40.20 2.24
841 947 8.990693 AATTACTCCCCTGTAATATGAGGTAT 57.009 34.615 0.00 0.00 40.85 2.73
842 948 8.808240 AAATTACTCCCCTGTAATATGAGGTA 57.192 34.615 0.00 0.00 40.85 3.08
843 949 7.707467 AAATTACTCCCCTGTAATATGAGGT 57.293 36.000 0.00 0.00 40.85 3.85
844 950 9.726438 CTTAAATTACTCCCCTGTAATATGAGG 57.274 37.037 0.00 0.00 40.85 3.86
845 951 9.726438 CCTTAAATTACTCCCCTGTAATATGAG 57.274 37.037 0.00 0.00 40.85 2.90
846 952 8.161425 GCCTTAAATTACTCCCCTGTAATATGA 58.839 37.037 0.00 0.00 40.85 2.15
847 953 8.164070 AGCCTTAAATTACTCCCCTGTAATATG 58.836 37.037 0.00 0.00 40.85 1.78
848 954 8.289182 AGCCTTAAATTACTCCCCTGTAATAT 57.711 34.615 0.00 0.00 40.85 1.28
849 955 7.202158 GGAGCCTTAAATTACTCCCCTGTAATA 60.202 40.741 0.00 0.00 42.44 0.98
850 956 6.410504 GGAGCCTTAAATTACTCCCCTGTAAT 60.411 42.308 0.00 0.00 42.44 1.89
851 957 5.104235 GGAGCCTTAAATTACTCCCCTGTAA 60.104 44.000 0.00 0.00 42.44 2.41
852 958 4.411212 GGAGCCTTAAATTACTCCCCTGTA 59.589 45.833 0.00 0.00 42.44 2.74
853 959 3.202373 GGAGCCTTAAATTACTCCCCTGT 59.798 47.826 0.00 0.00 42.44 4.00
873 979 3.510388 TCATTTTGTTGTTGTTGCGGA 57.490 38.095 0.00 0.00 0.00 5.54
874 980 3.862267 TCTTCATTTTGTTGTTGTTGCGG 59.138 39.130 0.00 0.00 0.00 5.69
880 986 8.449397 TCATTTTGGTTCTTCATTTTGTTGTTG 58.551 29.630 0.00 0.00 0.00 3.33
891 997 5.132502 TCAGCTCTTCATTTTGGTTCTTCA 58.867 37.500 0.00 0.00 0.00 3.02
895 1001 5.091431 CGAATCAGCTCTTCATTTTGGTTC 58.909 41.667 6.41 0.00 0.00 3.62
896 1002 4.616835 GCGAATCAGCTCTTCATTTTGGTT 60.617 41.667 6.41 0.00 0.00 3.67
897 1003 3.119708 GCGAATCAGCTCTTCATTTTGGT 60.120 43.478 6.41 0.00 0.00 3.67
898 1004 3.432782 GCGAATCAGCTCTTCATTTTGG 58.567 45.455 6.41 0.00 0.00 3.28
899 1005 3.096461 CGCGAATCAGCTCTTCATTTTG 58.904 45.455 0.00 0.00 34.40 2.44
900 1006 2.096496 CCGCGAATCAGCTCTTCATTTT 59.904 45.455 8.23 0.00 34.40 1.82
901 1007 1.667724 CCGCGAATCAGCTCTTCATTT 59.332 47.619 8.23 0.00 34.40 2.32
902 1008 1.293924 CCGCGAATCAGCTCTTCATT 58.706 50.000 8.23 0.00 34.40 2.57
903 1009 0.531532 CCCGCGAATCAGCTCTTCAT 60.532 55.000 8.23 0.00 34.40 2.57
904 1010 1.153568 CCCGCGAATCAGCTCTTCA 60.154 57.895 8.23 0.00 34.40 3.02
905 1011 2.529619 GCCCGCGAATCAGCTCTTC 61.530 63.158 8.23 0.00 34.40 2.87
906 1012 2.512515 GCCCGCGAATCAGCTCTT 60.513 61.111 8.23 0.00 34.40 2.85
939 1045 3.496131 CAATGTTCCGACCGCCCG 61.496 66.667 0.00 0.00 0.00 6.13
940 1046 1.969589 AACAATGTTCCGACCGCCC 60.970 57.895 0.00 0.00 0.00 6.13
941 1047 1.209127 CAACAATGTTCCGACCGCC 59.791 57.895 0.00 0.00 0.00 6.13
942 1048 1.209127 CCAACAATGTTCCGACCGC 59.791 57.895 0.00 0.00 0.00 5.68
943 1049 1.209127 GCCAACAATGTTCCGACCG 59.791 57.895 0.00 0.00 0.00 4.79
944 1050 0.521735 GAGCCAACAATGTTCCGACC 59.478 55.000 0.00 0.00 0.00 4.79
945 1051 0.165944 CGAGCCAACAATGTTCCGAC 59.834 55.000 0.00 0.00 0.00 4.79
946 1052 0.034198 TCGAGCCAACAATGTTCCGA 59.966 50.000 0.00 0.78 0.00 4.55
947 1053 1.062587 GATCGAGCCAACAATGTTCCG 59.937 52.381 0.00 0.00 0.00 4.30
948 1054 1.401905 GGATCGAGCCAACAATGTTCC 59.598 52.381 16.44 0.00 0.00 3.62
949 1055 2.083774 TGGATCGAGCCAACAATGTTC 58.916 47.619 22.36 0.00 34.31 3.18
950 1056 1.812571 GTGGATCGAGCCAACAATGTT 59.187 47.619 26.48 0.00 40.20 2.71
951 1057 1.453155 GTGGATCGAGCCAACAATGT 58.547 50.000 26.48 0.00 40.20 2.71
952 1058 0.734889 GGTGGATCGAGCCAACAATG 59.265 55.000 32.04 0.00 45.19 2.82
953 1059 0.744414 CGGTGGATCGAGCCAACAAT 60.744 55.000 34.79 0.00 46.20 2.71
954 1060 1.375396 CGGTGGATCGAGCCAACAA 60.375 57.895 34.79 5.89 46.20 2.83
955 1061 2.264480 CGGTGGATCGAGCCAACA 59.736 61.111 34.79 6.31 46.20 3.33
956 1062 2.511600 CCGGTGGATCGAGCCAAC 60.512 66.667 27.81 27.81 42.35 3.77
957 1063 3.781307 CCCGGTGGATCGAGCCAA 61.781 66.667 26.48 5.79 40.20 4.52
960 1066 4.593864 GAGCCCGGTGGATCGAGC 62.594 72.222 0.00 0.00 37.30 5.03
983 1089 0.961358 AAGAGGAGTGGTCGAGGTCG 60.961 60.000 0.00 0.00 41.45 4.79
984 1090 1.258676 AAAGAGGAGTGGTCGAGGTC 58.741 55.000 0.00 0.00 0.00 3.85
985 1091 2.599408 TAAAGAGGAGTGGTCGAGGT 57.401 50.000 0.00 0.00 0.00 3.85
986 1092 5.183522 GGTATATAAAGAGGAGTGGTCGAGG 59.816 48.000 0.00 0.00 0.00 4.63
987 1093 5.106634 CGGTATATAAAGAGGAGTGGTCGAG 60.107 48.000 0.00 0.00 0.00 4.04
988 1094 4.758674 CGGTATATAAAGAGGAGTGGTCGA 59.241 45.833 0.00 0.00 0.00 4.20
989 1095 4.082895 CCGGTATATAAAGAGGAGTGGTCG 60.083 50.000 0.00 0.00 0.00 4.79
990 1096 4.321824 GCCGGTATATAAAGAGGAGTGGTC 60.322 50.000 1.90 0.00 0.00 4.02
991 1097 3.577415 GCCGGTATATAAAGAGGAGTGGT 59.423 47.826 1.90 0.00 0.00 4.16
1025 1139 4.148825 GGCGGTGGTCTGAGCGAT 62.149 66.667 2.07 0.00 39.17 4.58
1046 1174 0.540830 AGAAGCAGAGGGAGTGTCGT 60.541 55.000 0.00 0.00 0.00 4.34
1049 1177 2.022718 AGAAGAAGCAGAGGGAGTGT 57.977 50.000 0.00 0.00 0.00 3.55
1062 1190 4.745125 GTGTGTGTCGATGAAGAAGAAGAA 59.255 41.667 0.00 0.00 0.00 2.52
1074 1202 2.357034 GGGCGTGTGTGTGTCGAT 60.357 61.111 0.00 0.00 0.00 3.59
1094 1222 3.475774 CGTCGCAACTGGGTACGC 61.476 66.667 2.35 2.35 0.00 4.42
1095 1223 3.475774 GCGTCGCAACTGGGTACG 61.476 66.667 13.44 11.52 35.96 3.67
1096 1224 3.116531 GGCGTCGCAACTGGGTAC 61.117 66.667 20.50 0.00 0.00 3.34
1097 1225 4.382320 GGGCGTCGCAACTGGGTA 62.382 66.667 20.50 0.00 0.00 3.69
1280 1428 3.978410 GAGGGCCACGGGAGTAGGT 62.978 68.421 6.18 0.00 44.67 3.08
1485 1675 2.760385 GTACGCCCAGAGCTCCCT 60.760 66.667 10.93 0.00 40.39 4.20
1545 1735 4.468769 CCAGCCCATGCCCACCAT 62.469 66.667 0.00 0.00 38.69 3.55
1603 1799 1.519455 GACAAGTCCATCTCCGGCG 60.519 63.158 0.00 0.00 0.00 6.46
1617 1813 3.504021 CTCAGAGCTTGAGCGACAA 57.496 52.632 11.34 0.00 46.30 3.18
1643 1839 4.904241 AGATATTGCCTCTGGAATGTAGC 58.096 43.478 0.00 0.00 0.00 3.58
1644 1840 7.548427 CACATAGATATTGCCTCTGGAATGTAG 59.452 40.741 0.00 0.00 0.00 2.74
1675 1888 1.909141 GCTAGCTAGGCGCATGCATG 61.909 60.000 22.70 22.70 45.35 4.06
1688 1905 1.153549 GTTGGCACGCTAGCTAGCT 60.154 57.895 36.02 23.12 46.85 3.32
1702 1919 6.528476 CAATGAATTGAGCACCACTTGTTGG 61.528 44.000 0.00 0.00 44.95 3.77
1905 2156 2.665165 TGCAAATGAGACAACCCAACT 58.335 42.857 0.00 0.00 0.00 3.16
1911 2162 7.033791 AGATTGATTGATGCAAATGAGACAAC 58.966 34.615 0.00 0.00 0.00 3.32
1938 2200 7.913789 TGTTCTTTACTGTCCTATTACATGGT 58.086 34.615 0.00 0.00 0.00 3.55
1949 2211 4.922103 CGGACTAGTTGTTCTTTACTGTCC 59.078 45.833 0.00 0.00 38.18 4.02
1958 2220 9.221933 CTGAGTATATATCGGACTAGTTGTTCT 57.778 37.037 0.00 0.00 0.00 3.01
1966 2228 9.384764 CTTGATCACTGAGTATATATCGGACTA 57.615 37.037 0.00 0.00 0.00 2.59
1968 2230 6.970043 GCTTGATCACTGAGTATATATCGGAC 59.030 42.308 0.00 0.00 0.00 4.79
1984 2246 7.224557 TGTGTACACATACATATGCTTGATCAC 59.775 37.037 24.62 9.93 43.21 3.06
2048 2314 2.086869 CACTGGGCTGGAGTGTTAATG 58.913 52.381 0.00 0.00 36.79 1.90
2176 2453 3.328505 CAAGCAAAAATGGATCGGCTTT 58.671 40.909 0.00 0.00 39.36 3.51
2177 2454 2.354003 CCAAGCAAAAATGGATCGGCTT 60.354 45.455 0.00 0.00 41.82 4.35
2178 2455 1.205417 CCAAGCAAAAATGGATCGGCT 59.795 47.619 0.00 0.00 39.12 5.52
2179 2456 1.643880 CCAAGCAAAAATGGATCGGC 58.356 50.000 0.00 0.00 39.12 5.54
2180 2457 1.740043 GCCCAAGCAAAAATGGATCGG 60.740 52.381 0.00 0.00 39.12 4.18
2181 2458 1.643880 GCCCAAGCAAAAATGGATCG 58.356 50.000 0.00 0.00 39.12 3.69
2182 2459 1.643880 CGCCCAAGCAAAAATGGATC 58.356 50.000 0.00 0.00 39.12 3.36
2183 2460 0.391528 GCGCCCAAGCAAAAATGGAT 60.392 50.000 0.00 0.00 39.12 3.41
2184 2461 1.005156 GCGCCCAAGCAAAAATGGA 60.005 52.632 0.00 0.00 39.12 3.41
2185 2462 2.381967 CGCGCCCAAGCAAAAATGG 61.382 57.895 0.00 0.00 39.83 3.16
2186 2463 1.616872 GACGCGCCCAAGCAAAAATG 61.617 55.000 5.73 0.00 39.83 2.32
2187 2464 1.372872 GACGCGCCCAAGCAAAAAT 60.373 52.632 5.73 0.00 39.83 1.82
2188 2465 2.026879 GACGCGCCCAAGCAAAAA 59.973 55.556 5.73 0.00 39.83 1.94
2189 2466 2.903547 GAGACGCGCCCAAGCAAAA 61.904 57.895 5.73 0.00 39.83 2.44
2190 2467 3.353836 GAGACGCGCCCAAGCAAA 61.354 61.111 5.73 0.00 39.83 3.68
2194 2471 3.302347 AAGAGGAGACGCGCCCAAG 62.302 63.158 5.73 0.00 34.13 3.61
2195 2472 3.296709 GAAGAGGAGACGCGCCCAA 62.297 63.158 5.73 0.00 34.13 4.12
2196 2473 2.831894 TAGAAGAGGAGACGCGCCCA 62.832 60.000 5.73 0.00 34.13 5.36
2197 2474 2.065906 CTAGAAGAGGAGACGCGCCC 62.066 65.000 5.73 5.16 34.13 6.13
2198 2475 1.096386 TCTAGAAGAGGAGACGCGCC 61.096 60.000 5.73 0.00 34.13 6.53
2199 2476 0.948678 ATCTAGAAGAGGAGACGCGC 59.051 55.000 5.73 0.00 34.13 6.86
2200 2477 1.533731 GGATCTAGAAGAGGAGACGCG 59.466 57.143 3.53 3.53 34.13 6.01
2201 2478 1.883926 GGGATCTAGAAGAGGAGACGC 59.116 57.143 0.00 0.00 0.00 5.19
2202 2479 2.107552 AGGGGATCTAGAAGAGGAGACG 59.892 54.545 0.00 0.00 0.00 4.18
2203 2480 3.895041 CAAGGGGATCTAGAAGAGGAGAC 59.105 52.174 0.00 0.00 0.00 3.36
2204 2481 3.692772 GCAAGGGGATCTAGAAGAGGAGA 60.693 52.174 0.00 0.00 0.00 3.71
2205 2482 2.632512 GCAAGGGGATCTAGAAGAGGAG 59.367 54.545 0.00 0.00 0.00 3.69
2206 2483 2.248686 AGCAAGGGGATCTAGAAGAGGA 59.751 50.000 0.00 0.00 0.00 3.71
2207 2484 2.688477 AGCAAGGGGATCTAGAAGAGG 58.312 52.381 0.00 0.00 0.00 3.69
2208 2485 4.163078 TCAAAGCAAGGGGATCTAGAAGAG 59.837 45.833 0.00 0.00 0.00 2.85
2209 2486 4.080863 GTCAAAGCAAGGGGATCTAGAAGA 60.081 45.833 0.00 0.00 0.00 2.87
2210 2487 4.195416 GTCAAAGCAAGGGGATCTAGAAG 58.805 47.826 0.00 0.00 0.00 2.85
2211 2488 3.369471 CGTCAAAGCAAGGGGATCTAGAA 60.369 47.826 0.00 0.00 0.00 2.10
2212 2489 2.168521 CGTCAAAGCAAGGGGATCTAGA 59.831 50.000 0.00 0.00 0.00 2.43
2213 2490 2.093447 ACGTCAAAGCAAGGGGATCTAG 60.093 50.000 0.00 0.00 0.00 2.43
2392 2680 2.690497 CGTCTAGTCAGATCATGGTGGT 59.310 50.000 0.00 0.00 32.09 4.16
2416 2708 1.358759 GGGCGTTGTTTGGTGAGTG 59.641 57.895 0.00 0.00 0.00 3.51
2424 2716 1.178276 TGACAAGTTGGGCGTTGTTT 58.822 45.000 7.96 0.00 37.02 2.83
2481 2773 1.480789 TCGCTCCAGGCATGTAAGTA 58.519 50.000 0.00 0.00 41.91 2.24
2483 2775 2.820059 TATCGCTCCAGGCATGTAAG 57.180 50.000 0.00 0.00 41.91 2.34
2484 2776 3.552132 TTTATCGCTCCAGGCATGTAA 57.448 42.857 0.00 0.00 41.91 2.41
2485 2777 3.552132 TTTTATCGCTCCAGGCATGTA 57.448 42.857 0.00 0.00 41.91 2.29
2486 2778 2.418368 TTTTATCGCTCCAGGCATGT 57.582 45.000 0.00 0.00 41.91 3.21
2487 2779 2.223572 GGTTTTTATCGCTCCAGGCATG 60.224 50.000 0.00 0.00 41.91 4.06
2521 2814 6.248433 TCAGTTAATCTTGCCTCCAAAAGAT 58.752 36.000 0.00 0.00 43.37 2.40
2632 2925 7.144000 TCATCATGACGATCAGAAGTGATTAG 58.856 38.462 0.00 0.00 43.92 1.73
2694 2987 1.315257 GGCCCACCAATACACTGCAG 61.315 60.000 13.48 13.48 35.26 4.41
2725 3018 1.808411 TACTGCTTTCCCTTTGCTCG 58.192 50.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.