Multiple sequence alignment - TraesCS5B01G363300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G363300 chr5B 100.000 2516 0 0 1 2516 542321206 542318691 0.000000e+00 4647.0
1 TraesCS5B01G363300 chr5B 82.042 568 35 33 1140 1674 542295617 542295084 2.990000e-114 422.0
2 TraesCS5B01G363300 chr5B 83.152 368 44 5 1149 1516 542331305 542330956 1.120000e-83 320.0
3 TraesCS5B01G363300 chr5B 87.967 241 15 10 2287 2515 542294905 542294667 3.190000e-69 272.0
4 TraesCS5B01G363300 chr5B 79.339 121 20 5 2000 2118 304265642 304265525 2.070000e-11 80.5
5 TraesCS5B01G363300 chr5A 92.140 1603 94 17 2 1590 562109587 562108003 0.000000e+00 2233.0
6 TraesCS5B01G363300 chr5A 94.475 362 9 7 2165 2515 562107802 562107441 4.730000e-152 547.0
7 TraesCS5B01G363300 chr5A 82.787 610 48 25 1109 1674 562100941 562100345 2.250000e-135 492.0
8 TraesCS5B01G363300 chr5A 83.658 514 46 23 1007 1516 562116955 562116476 1.370000e-122 449.0
9 TraesCS5B01G363300 chr5A 75.676 518 72 37 1007 1515 562407359 562406887 2.540000e-50 209.0
10 TraesCS5B01G363300 chr5A 78.704 216 20 12 2162 2364 562100189 562099987 1.220000e-23 121.0
11 TraesCS5B01G363300 chr5A 88.764 89 3 1 1684 1765 562107987 562107899 4.430000e-18 102.0
12 TraesCS5B01G363300 chr5D 93.534 1160 52 11 435 1585 445063488 445062343 0.000000e+00 1705.0
13 TraesCS5B01G363300 chr5D 89.542 459 33 7 1109 1560 444976456 444976006 3.630000e-158 568.0
14 TraesCS5B01G363300 chr5D 96.037 328 9 3 2192 2515 445061636 445061309 4.770000e-147 531.0
15 TraesCS5B01G363300 chr5D 82.897 649 46 39 881 1516 445056263 445055667 7.970000e-145 523.0
16 TraesCS5B01G363300 chr5D 90.884 362 22 4 2 358 445063844 445063489 2.260000e-130 475.0
17 TraesCS5B01G363300 chr5D 82.066 513 44 22 1007 1516 445072925 445072458 6.520000e-106 394.0
18 TraesCS5B01G363300 chr5D 82.918 281 26 10 2196 2469 445055173 445054908 1.500000e-57 233.0
19 TraesCS5B01G363300 chr5D 85.475 179 18 6 2304 2476 445111110 445110934 1.990000e-41 180.0
20 TraesCS5B01G363300 chr5D 87.209 86 4 1 1687 1765 445062239 445062154 9.580000e-15 91.6
21 TraesCS5B01G363300 chr3B 82.210 371 61 5 1783 2151 670067475 670067842 5.220000e-82 315.0
22 TraesCS5B01G363300 chr4B 80.688 378 59 11 1783 2151 529569966 529570338 5.300000e-72 281.0
23 TraesCS5B01G363300 chr1A 77.568 370 64 14 1789 2151 326324126 326323769 3.280000e-49 206.0
24 TraesCS5B01G363300 chr4D 77.236 369 67 13 1790 2150 1144978 1145337 1.530000e-47 200.0
25 TraesCS5B01G363300 chr7D 79.781 183 27 9 1972 2150 540626589 540626765 9.450000e-25 124.0
26 TraesCS5B01G363300 chr7D 81.609 87 12 4 1784 1869 601930444 601930361 4.490000e-08 69.4
27 TraesCS5B01G363300 chr7B 81.609 87 10 5 1784 1869 680916480 680916399 1.620000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G363300 chr5B 542318691 542321206 2515 True 4647.000000 4647 100.0000 1 2516 1 chr5B.!!$R2 2515
1 TraesCS5B01G363300 chr5B 542294667 542295617 950 True 347.000000 422 85.0045 1140 2515 2 chr5B.!!$R4 1375
2 TraesCS5B01G363300 chr5A 562107441 562109587 2146 True 960.666667 2233 91.7930 2 2515 3 chr5A.!!$R4 2513
3 TraesCS5B01G363300 chr5A 562099987 562100941 954 True 306.500000 492 80.7455 1109 2364 2 chr5A.!!$R3 1255
4 TraesCS5B01G363300 chr5D 445061309 445063844 2535 True 700.650000 1705 91.9160 2 2515 4 chr5D.!!$R5 2513
5 TraesCS5B01G363300 chr5D 445054908 445056263 1355 True 378.000000 523 82.9075 881 2469 2 chr5D.!!$R4 1588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 371 0.251209 AGCCTAGCCATCCATGCATG 60.251 55.0 20.19 20.19 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 2213 0.183492 GCATGGGAGTAGATTGGGCA 59.817 55.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.762823 TGCAAAGTTGATATGCCATGACA 59.237 39.130 0.00 0.00 39.31 3.58
44 45 4.142315 GCAAAGTTGATATGCCATGACAGT 60.142 41.667 0.00 0.00 34.03 3.55
202 204 4.405358 AGATATAATGCTAGCTCTCCTGCC 59.595 45.833 17.23 0.00 0.00 4.85
213 215 4.323477 TCCTGCCGAACAACCCCG 62.323 66.667 0.00 0.00 0.00 5.73
311 319 6.348868 CCTTCAGAGCAAGAGTCCAAATTTAC 60.349 42.308 0.00 0.00 0.00 2.01
360 368 1.068127 CAAAAGCCTAGCCATCCATGC 59.932 52.381 0.00 0.00 0.00 4.06
361 369 0.259647 AAAGCCTAGCCATCCATGCA 59.740 50.000 0.00 0.00 0.00 3.96
362 370 0.481567 AAGCCTAGCCATCCATGCAT 59.518 50.000 0.00 0.00 0.00 3.96
363 371 0.251209 AGCCTAGCCATCCATGCATG 60.251 55.000 20.19 20.19 0.00 4.06
427 435 6.127647 TGCAAGCTAATTTCCTCCAATGTTAG 60.128 38.462 0.00 0.00 0.00 2.34
526 534 6.361481 ACGTATGCACATGAACGTGTATATAC 59.639 38.462 10.00 5.89 45.93 1.47
563 572 3.436359 CCCCGCAAAAGAAAAATCATTGG 59.564 43.478 0.00 0.00 0.00 3.16
649 658 6.685403 ACGTCGTTCAAAATGTCTTGTAAAAG 59.315 34.615 0.00 0.00 0.00 2.27
692 701 1.218763 GACTCGATCGATGAGGACGA 58.781 55.000 19.78 14.73 43.65 4.20
707 716 1.372087 GACGAATGAAGCTGGCTGGG 61.372 60.000 0.00 0.00 0.00 4.45
718 727 2.321263 CTGGCTGGGTGCAGATCGAT 62.321 60.000 0.00 0.00 45.15 3.59
871 880 4.803426 GGGCTCGCTCGACCACTG 62.803 72.222 11.07 0.00 0.00 3.66
872 881 4.803426 GGCTCGCTCGACCACTGG 62.803 72.222 0.00 0.00 0.00 4.00
874 883 3.753434 CTCGCTCGACCACTGGCT 61.753 66.667 0.00 0.00 0.00 4.75
879 888 3.057547 CTCGACCACTGGCTCCTCG 62.058 68.421 0.00 0.00 0.00 4.63
950 963 1.760480 GCCTCCTGTCCTCCTCTCC 60.760 68.421 0.00 0.00 0.00 3.71
1017 1033 1.070445 CATGGAGATGGAGGGCGAC 59.930 63.158 0.00 0.00 0.00 5.19
1547 1587 3.902881 AACACTAGATTCCAGAGGCAG 57.097 47.619 0.00 0.00 0.00 4.85
1554 1594 2.437281 AGATTCCAGAGGCAGTATGTGG 59.563 50.000 0.00 0.00 39.31 4.17
1561 1615 3.051581 AGAGGCAGTATGTGGATGGATT 58.948 45.455 0.00 0.00 39.31 3.01
1562 1616 3.144506 GAGGCAGTATGTGGATGGATTG 58.855 50.000 0.00 0.00 39.31 2.67
1580 1639 4.518970 GGATTGGTCTAGCTTGTCAACAAA 59.481 41.667 0.00 0.00 35.15 2.83
1585 1647 6.296026 TGGTCTAGCTTGTCAACAAATACTT 58.704 36.000 0.00 0.00 35.15 2.24
1586 1648 7.446769 TGGTCTAGCTTGTCAACAAATACTTA 58.553 34.615 0.00 0.00 35.15 2.24
1588 1650 7.603024 GGTCTAGCTTGTCAACAAATACTTACT 59.397 37.037 0.00 0.00 35.15 2.24
1589 1651 9.635520 GTCTAGCTTGTCAACAAATACTTACTA 57.364 33.333 0.00 0.00 35.15 1.82
1590 1652 9.635520 TCTAGCTTGTCAACAAATACTTACTAC 57.364 33.333 0.00 0.00 35.15 2.73
1591 1653 9.640963 CTAGCTTGTCAACAAATACTTACTACT 57.359 33.333 0.00 0.00 35.15 2.57
1593 1655 9.640963 AGCTTGTCAACAAATACTTACTACTAG 57.359 33.333 0.00 0.00 35.15 2.57
1594 1656 8.870879 GCTTGTCAACAAATACTTACTACTAGG 58.129 37.037 0.00 0.00 35.15 3.02
1595 1657 9.924650 CTTGTCAACAAATACTTACTACTAGGT 57.075 33.333 0.00 0.00 35.15 3.08
1636 1732 2.475200 GCACCTGGCGATTGATTAAC 57.525 50.000 0.00 0.00 0.00 2.01
1674 1805 3.837213 ATTGATTGTTTCAGCTCACCG 57.163 42.857 0.00 0.00 35.27 4.94
1675 1806 2.254546 TGATTGTTTCAGCTCACCGT 57.745 45.000 0.00 0.00 0.00 4.83
1676 1807 1.872952 TGATTGTTTCAGCTCACCGTG 59.127 47.619 0.00 0.00 0.00 4.94
1678 1809 1.771073 TTGTTTCAGCTCACCGTGCG 61.771 55.000 0.00 0.00 35.28 5.34
1679 1810 3.345808 TTTCAGCTCACCGTGCGC 61.346 61.111 5.31 5.31 35.28 6.09
1694 1966 1.087501 TGCGCGCCATTATGTGTAAA 58.912 45.000 30.77 0.71 0.00 2.01
1768 2071 8.050778 TGTTGGTCTCATTTACATCAATAACC 57.949 34.615 0.00 0.00 0.00 2.85
1781 2138 6.522054 ACATCAATAACCACTAATAGGACGG 58.478 40.000 0.00 0.00 0.00 4.79
1786 2143 6.989155 ATAACCACTAATAGGACGGATGAA 57.011 37.500 0.00 0.00 0.00 2.57
1789 2146 4.654262 ACCACTAATAGGACGGATGAACAT 59.346 41.667 0.00 0.00 0.00 2.71
1794 2151 9.273016 CACTAATAGGACGGATGAACATTAAAT 57.727 33.333 0.00 0.00 0.00 1.40
1797 2154 8.746052 AATAGGACGGATGAACATTAAATTCA 57.254 30.769 7.70 7.70 40.25 2.57
1831 2189 9.483916 ACCGGGAAAATTCAAAAATAAAACTAG 57.516 29.630 6.32 0.00 0.00 2.57
1832 2190 8.931775 CCGGGAAAATTCAAAAATAAAACTAGG 58.068 33.333 0.00 0.00 0.00 3.02
1833 2191 9.699703 CGGGAAAATTCAAAAATAAAACTAGGA 57.300 29.630 0.00 0.00 0.00 2.94
1854 2212 9.610705 CTAGGATATTCAGATATCAAACATGGG 57.389 37.037 5.32 0.00 43.91 4.00
1855 2213 7.993416 AGGATATTCAGATATCAAACATGGGT 58.007 34.615 5.32 0.00 43.91 4.51
1856 2214 7.886970 AGGATATTCAGATATCAAACATGGGTG 59.113 37.037 5.32 0.00 43.91 4.61
1857 2215 5.779529 ATTCAGATATCAAACATGGGTGC 57.220 39.130 5.32 0.00 0.00 5.01
1858 2216 3.554934 TCAGATATCAAACATGGGTGCC 58.445 45.455 5.32 0.00 0.00 5.01
1859 2217 2.624838 CAGATATCAAACATGGGTGCCC 59.375 50.000 5.32 0.00 0.00 5.36
1869 2227 2.307153 TGGGTGCCCAATCTACTCC 58.693 57.895 7.63 0.00 44.12 3.85
1870 2228 1.279025 TGGGTGCCCAATCTACTCCC 61.279 60.000 7.63 0.00 44.12 4.30
1871 2229 1.279025 GGGTGCCCAATCTACTCCCA 61.279 60.000 1.66 0.00 35.81 4.37
1872 2230 0.846693 GGTGCCCAATCTACTCCCAT 59.153 55.000 0.00 0.00 0.00 4.00
1873 2231 1.477558 GGTGCCCAATCTACTCCCATG 60.478 57.143 0.00 0.00 0.00 3.66
1874 2232 0.183492 TGCCCAATCTACTCCCATGC 59.817 55.000 0.00 0.00 0.00 4.06
1875 2233 0.886490 GCCCAATCTACTCCCATGCG 60.886 60.000 0.00 0.00 0.00 4.73
1876 2234 0.250467 CCCAATCTACTCCCATGCGG 60.250 60.000 0.00 0.00 0.00 5.69
1877 2235 0.758734 CCAATCTACTCCCATGCGGA 59.241 55.000 3.30 3.30 38.83 5.54
1911 2269 7.447374 AAAAATGACATTCGTGGTATTCTCA 57.553 32.000 0.05 0.00 0.00 3.27
1913 2271 4.801330 TGACATTCGTGGTATTCTCAGT 57.199 40.909 0.00 0.00 0.00 3.41
1919 2277 8.029642 ACATTCGTGGTATTCTCAGTAAAAAG 57.970 34.615 0.00 0.00 0.00 2.27
1921 2279 7.647907 TTCGTGGTATTCTCAGTAAAAAGAC 57.352 36.000 0.00 0.00 0.00 3.01
1923 2281 7.211573 TCGTGGTATTCTCAGTAAAAAGACAA 58.788 34.615 0.00 0.00 0.00 3.18
1926 2284 9.665264 GTGGTATTCTCAGTAAAAAGACAAAAG 57.335 33.333 0.00 0.00 0.00 2.27
1927 2285 9.621629 TGGTATTCTCAGTAAAAAGACAAAAGA 57.378 29.630 0.00 0.00 0.00 2.52
1938 2296 9.129209 GTAAAAAGACAAAAGAATCCTATGTGC 57.871 33.333 0.00 0.00 0.00 4.57
1942 2300 6.917533 AGACAAAAGAATCCTATGTGCAAAG 58.082 36.000 0.00 0.00 0.00 2.77
1943 2301 6.716628 AGACAAAAGAATCCTATGTGCAAAGA 59.283 34.615 0.00 0.00 0.00 2.52
1944 2302 7.231317 AGACAAAAGAATCCTATGTGCAAAGAA 59.769 33.333 0.00 0.00 0.00 2.52
1945 2303 7.725251 ACAAAAGAATCCTATGTGCAAAGAAA 58.275 30.769 0.00 0.00 0.00 2.52
1946 2304 7.653311 ACAAAAGAATCCTATGTGCAAAGAAAC 59.347 33.333 0.00 0.00 0.00 2.78
1948 2306 8.635765 AAAGAATCCTATGTGCAAAGAAACTA 57.364 30.769 0.00 0.00 0.00 2.24
1949 2307 8.814038 AAGAATCCTATGTGCAAAGAAACTAT 57.186 30.769 0.00 0.00 0.00 2.12
1950 2308 8.814038 AGAATCCTATGTGCAAAGAAACTATT 57.186 30.769 0.00 0.00 0.00 1.73
1951 2309 9.247861 AGAATCCTATGTGCAAAGAAACTATTT 57.752 29.630 0.00 0.00 0.00 1.40
1952 2310 9.294030 GAATCCTATGTGCAAAGAAACTATTTG 57.706 33.333 0.00 0.00 39.99 2.32
1954 2312 6.152661 TCCTATGTGCAAAGAAACTATTTGGG 59.847 38.462 0.00 0.00 37.96 4.12
1955 2313 5.806654 ATGTGCAAAGAAACTATTTGGGT 57.193 34.783 0.00 0.00 37.96 4.51
1957 2315 4.202202 TGTGCAAAGAAACTATTTGGGTGG 60.202 41.667 0.00 0.00 37.96 4.61
1958 2316 4.038642 GTGCAAAGAAACTATTTGGGTGGA 59.961 41.667 0.00 0.00 37.96 4.02
1960 2318 5.047377 TGCAAAGAAACTATTTGGGTGGATC 60.047 40.000 0.00 0.00 37.96 3.36
1961 2319 5.047377 GCAAAGAAACTATTTGGGTGGATCA 60.047 40.000 0.00 0.00 37.96 2.92
1963 2321 7.147915 GCAAAGAAACTATTTGGGTGGATCATA 60.148 37.037 0.00 0.00 37.96 2.15
1964 2322 8.408601 CAAAGAAACTATTTGGGTGGATCATAG 58.591 37.037 0.00 0.00 34.66 2.23
1965 2323 6.605119 AGAAACTATTTGGGTGGATCATAGG 58.395 40.000 0.00 0.00 0.00 2.57
1966 2324 5.994416 AACTATTTGGGTGGATCATAGGT 57.006 39.130 0.00 0.00 0.00 3.08
1967 2325 5.568620 ACTATTTGGGTGGATCATAGGTC 57.431 43.478 0.00 0.00 0.00 3.85
1968 2326 3.492102 ATTTGGGTGGATCATAGGTCG 57.508 47.619 0.00 0.00 0.00 4.79
1969 2327 1.874129 TTGGGTGGATCATAGGTCGT 58.126 50.000 0.00 0.00 0.00 4.34
1970 2328 2.759839 TGGGTGGATCATAGGTCGTA 57.240 50.000 0.00 0.00 0.00 3.43
1971 2329 2.313317 TGGGTGGATCATAGGTCGTAC 58.687 52.381 0.00 0.00 0.00 3.67
1972 2330 2.091499 TGGGTGGATCATAGGTCGTACT 60.091 50.000 0.00 0.00 0.00 2.73
1973 2331 2.296471 GGGTGGATCATAGGTCGTACTG 59.704 54.545 0.00 0.00 0.00 2.74
1974 2332 2.957006 GGTGGATCATAGGTCGTACTGT 59.043 50.000 0.00 0.00 0.00 3.55
1975 2333 4.139786 GGTGGATCATAGGTCGTACTGTA 58.860 47.826 0.00 0.00 0.00 2.74
1976 2334 4.765856 GGTGGATCATAGGTCGTACTGTAT 59.234 45.833 0.00 0.00 0.00 2.29
1977 2335 5.243283 GGTGGATCATAGGTCGTACTGTATT 59.757 44.000 0.00 0.00 0.00 1.89
1978 2336 6.239232 GGTGGATCATAGGTCGTACTGTATTT 60.239 42.308 0.00 0.00 0.00 1.40
1979 2337 7.208080 GTGGATCATAGGTCGTACTGTATTTT 58.792 38.462 0.00 0.00 0.00 1.82
1980 2338 7.381678 GTGGATCATAGGTCGTACTGTATTTTC 59.618 40.741 0.00 0.00 0.00 2.29
1981 2339 7.287005 TGGATCATAGGTCGTACTGTATTTTCT 59.713 37.037 0.00 0.00 0.00 2.52
1982 2340 8.142551 GGATCATAGGTCGTACTGTATTTTCTT 58.857 37.037 0.00 0.00 0.00 2.52
1983 2341 9.182933 GATCATAGGTCGTACTGTATTTTCTTC 57.817 37.037 0.00 0.00 0.00 2.87
1984 2342 7.191551 TCATAGGTCGTACTGTATTTTCTTCG 58.808 38.462 0.00 0.00 0.00 3.79
1985 2343 5.382618 AGGTCGTACTGTATTTTCTTCGT 57.617 39.130 0.00 0.00 0.00 3.85
1986 2344 5.397326 AGGTCGTACTGTATTTTCTTCGTC 58.603 41.667 0.00 0.00 0.00 4.20
1987 2345 5.048504 AGGTCGTACTGTATTTTCTTCGTCA 60.049 40.000 0.00 0.00 0.00 4.35
1988 2346 5.060200 GGTCGTACTGTATTTTCTTCGTCAC 59.940 44.000 0.00 0.00 0.00 3.67
1989 2347 5.855395 GTCGTACTGTATTTTCTTCGTCACT 59.145 40.000 0.00 0.00 0.00 3.41
1990 2348 5.854866 TCGTACTGTATTTTCTTCGTCACTG 59.145 40.000 0.00 0.00 0.00 3.66
1991 2349 5.854866 CGTACTGTATTTTCTTCGTCACTGA 59.145 40.000 0.00 0.00 0.00 3.41
1992 2350 6.527023 CGTACTGTATTTTCTTCGTCACTGAT 59.473 38.462 0.00 0.00 0.00 2.90
1993 2351 7.695201 CGTACTGTATTTTCTTCGTCACTGATA 59.305 37.037 0.00 0.00 0.00 2.15
1994 2352 7.813852 ACTGTATTTTCTTCGTCACTGATAC 57.186 36.000 0.00 0.00 0.00 2.24
1995 2353 7.375834 ACTGTATTTTCTTCGTCACTGATACA 58.624 34.615 0.00 0.00 0.00 2.29
1996 2354 8.035394 ACTGTATTTTCTTCGTCACTGATACAT 58.965 33.333 0.00 0.00 30.93 2.29
1997 2355 8.771920 TGTATTTTCTTCGTCACTGATACATT 57.228 30.769 0.00 0.00 0.00 2.71
1998 2356 8.869897 TGTATTTTCTTCGTCACTGATACATTC 58.130 33.333 0.00 0.00 0.00 2.67
1999 2357 6.721571 TTTTCTTCGTCACTGATACATTCC 57.278 37.500 0.00 0.00 0.00 3.01
2000 2358 5.661056 TTCTTCGTCACTGATACATTCCT 57.339 39.130 0.00 0.00 0.00 3.36
2001 2359 5.661056 TCTTCGTCACTGATACATTCCTT 57.339 39.130 0.00 0.00 0.00 3.36
2002 2360 5.410924 TCTTCGTCACTGATACATTCCTTG 58.589 41.667 0.00 0.00 0.00 3.61
2003 2361 4.123497 TCGTCACTGATACATTCCTTGG 57.877 45.455 0.00 0.00 0.00 3.61
2004 2362 3.513912 TCGTCACTGATACATTCCTTGGT 59.486 43.478 0.00 0.00 0.00 3.67
2005 2363 4.707934 TCGTCACTGATACATTCCTTGGTA 59.292 41.667 0.00 0.00 0.00 3.25
2006 2364 5.362717 TCGTCACTGATACATTCCTTGGTAT 59.637 40.000 0.00 0.00 33.10 2.73
2007 2365 6.049149 CGTCACTGATACATTCCTTGGTATT 58.951 40.000 0.00 0.00 30.68 1.89
2008 2366 6.538742 CGTCACTGATACATTCCTTGGTATTT 59.461 38.462 0.00 0.00 30.68 1.40
2009 2367 7.065803 CGTCACTGATACATTCCTTGGTATTTT 59.934 37.037 0.00 0.00 30.68 1.82
2010 2368 8.739972 GTCACTGATACATTCCTTGGTATTTTT 58.260 33.333 0.00 0.00 30.68 1.94
2030 2388 3.932545 TTCACGAAAAATCACATGGGG 57.067 42.857 0.00 0.00 0.00 4.96
2031 2389 2.166829 TCACGAAAAATCACATGGGGG 58.833 47.619 0.00 0.00 0.00 5.40
2032 2390 1.892474 CACGAAAAATCACATGGGGGT 59.108 47.619 0.00 0.00 0.00 4.95
2033 2391 3.085533 CACGAAAAATCACATGGGGGTA 58.914 45.455 0.00 0.00 0.00 3.69
2034 2392 3.128589 CACGAAAAATCACATGGGGGTAG 59.871 47.826 0.00 0.00 0.00 3.18
2035 2393 3.009695 ACGAAAAATCACATGGGGGTAGA 59.990 43.478 0.00 0.00 0.00 2.59
2036 2394 4.207165 CGAAAAATCACATGGGGGTAGAT 58.793 43.478 0.00 0.00 0.00 1.98
2037 2395 4.644685 CGAAAAATCACATGGGGGTAGATT 59.355 41.667 0.00 0.00 0.00 2.40
2038 2396 5.450412 CGAAAAATCACATGGGGGTAGATTG 60.450 44.000 0.00 0.00 0.00 2.67
2039 2397 3.600448 AATCACATGGGGGTAGATTGG 57.400 47.619 0.00 0.00 0.00 3.16
2040 2398 1.221635 TCACATGGGGGTAGATTGGG 58.778 55.000 0.00 0.00 0.00 4.12
2041 2399 0.468029 CACATGGGGGTAGATTGGGC 60.468 60.000 0.00 0.00 0.00 5.36
2042 2400 0.923729 ACATGGGGGTAGATTGGGCA 60.924 55.000 0.00 0.00 0.00 5.36
2043 2401 0.468029 CATGGGGGTAGATTGGGCAC 60.468 60.000 0.00 0.00 0.00 5.01
2059 2417 1.963515 GGCACCCATGTTTCATATCCC 59.036 52.381 0.00 0.00 0.00 3.85
2060 2418 2.665165 GCACCCATGTTTCATATCCCA 58.335 47.619 0.00 0.00 0.00 4.37
2064 2422 5.142639 CACCCATGTTTCATATCCCAAGAT 58.857 41.667 0.00 0.00 36.44 2.40
2066 2424 5.835280 ACCCATGTTTCATATCCCAAGATTC 59.165 40.000 0.00 0.00 33.67 2.52
2070 2428 6.325993 TGTTTCATATCCCAAGATTCCTGA 57.674 37.500 0.00 0.00 33.67 3.86
2075 2433 8.843308 TTCATATCCCAAGATTCCTGATTTTT 57.157 30.769 0.00 0.00 33.67 1.94
2123 2581 9.123902 TGAATTTGATATTCATACAGGGAAGTG 57.876 33.333 0.00 0.00 33.55 3.16
2124 2582 8.469309 AATTTGATATTCATACAGGGAAGTGG 57.531 34.615 0.00 0.00 0.00 4.00
2125 2583 6.823286 TTGATATTCATACAGGGAAGTGGA 57.177 37.500 0.00 0.00 0.00 4.02
2126 2584 6.425210 TGATATTCATACAGGGAAGTGGAG 57.575 41.667 0.00 0.00 0.00 3.86
2127 2585 3.567478 ATTCATACAGGGAAGTGGAGC 57.433 47.619 0.00 0.00 0.00 4.70
2128 2586 1.951209 TCATACAGGGAAGTGGAGCA 58.049 50.000 0.00 0.00 0.00 4.26
2129 2587 1.555075 TCATACAGGGAAGTGGAGCAC 59.445 52.381 0.00 0.00 34.10 4.40
2131 2589 1.198759 TACAGGGAAGTGGAGCACCC 61.199 60.000 0.00 0.00 42.36 4.61
2132 2590 2.121963 AGGGAAGTGGAGCACCCA 60.122 61.111 0.00 0.00 44.25 4.51
2142 2600 3.076092 AGCACCCAAGAGCTCCTG 58.924 61.111 10.93 7.89 34.53 3.86
2144 2602 1.673665 GCACCCAAGAGCTCCTGTG 60.674 63.158 10.93 13.32 0.00 3.66
2146 2604 2.149383 ACCCAAGAGCTCCTGTGCA 61.149 57.895 10.93 0.00 34.99 4.57
2147 2605 1.302285 CCCAAGAGCTCCTGTGCAT 59.698 57.895 10.93 0.00 34.99 3.96
2148 2606 0.323178 CCCAAGAGCTCCTGTGCATT 60.323 55.000 10.93 0.00 34.99 3.56
2150 2608 1.891150 CCAAGAGCTCCTGTGCATTTT 59.109 47.619 10.93 0.00 34.99 1.82
2151 2609 2.352421 CCAAGAGCTCCTGTGCATTTTG 60.352 50.000 10.93 4.86 34.99 2.44
2154 2612 2.086869 GAGCTCCTGTGCATTTTGCTA 58.913 47.619 0.87 0.00 45.31 3.49
2156 2614 3.094572 AGCTCCTGTGCATTTTGCTAAT 58.905 40.909 0.00 0.00 45.31 1.73
2159 2617 4.591202 CTCCTGTGCATTTTGCTAATACG 58.409 43.478 0.00 0.00 45.31 3.06
2160 2618 3.108144 CCTGTGCATTTTGCTAATACGC 58.892 45.455 0.00 0.00 45.31 4.42
2237 2730 5.279006 CCCAGTGCTACTACACCACATATAG 60.279 48.000 0.00 0.00 41.67 1.31
2304 2811 4.083110 AGTGTAGTGTGTACGTGTATGTCC 60.083 45.833 0.00 0.00 0.00 4.02
2330 2837 1.153997 GACGTGAGGTCCGCTTCTC 60.154 63.158 0.00 0.00 39.90 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.242870 GCAAAGCCACTCGAAGATAATGG 60.243 47.826 0.00 0.00 37.10 3.16
42 43 3.307480 GGCTAGGTGTTTGTACCATCACT 60.307 47.826 7.77 0.00 43.37 3.41
44 45 2.910319 AGGCTAGGTGTTTGTACCATCA 59.090 45.455 0.00 0.00 43.37 3.07
88 89 4.910195 TCAGCATGATGGTACTTTTCACT 58.090 39.130 11.71 0.00 42.56 3.41
202 204 0.390735 CTTAGGACCGGGGTTGTTCG 60.391 60.000 6.32 0.00 0.00 3.95
276 282 1.016653 GCTCTGAAGGGACGAGTTGC 61.017 60.000 0.00 0.00 0.00 4.17
283 289 1.066502 GGACTCTTGCTCTGAAGGGAC 60.067 57.143 0.00 0.00 0.00 4.46
311 319 2.158856 TCTTGCAGATAGATGTGCCAGG 60.159 50.000 11.36 2.48 45.48 4.45
339 347 1.068127 CATGGATGGCTAGGCTTTTGC 59.932 52.381 18.18 8.24 46.64 3.68
361 369 6.328934 TCCCCTATACATGTGTGAACATACAT 59.671 38.462 9.11 10.50 42.66 2.29
362 370 5.663556 TCCCCTATACATGTGTGAACATACA 59.336 40.000 9.11 6.82 36.87 2.29
363 371 6.169557 TCCCCTATACATGTGTGAACATAC 57.830 41.667 9.11 0.00 0.00 2.39
398 406 3.507233 TGGAGGAAATTAGCTTGCAACTG 59.493 43.478 0.00 0.00 0.00 3.16
400 408 4.519540 TTGGAGGAAATTAGCTTGCAAC 57.480 40.909 0.00 0.00 0.00 4.17
427 435 1.377725 CCTGGGTGACATGTCTGCC 60.378 63.158 25.55 24.18 0.00 4.85
526 534 1.610522 GCGGGGGAGATTTCAATGATG 59.389 52.381 0.00 0.00 0.00 3.07
597 606 4.201744 CGTTTTCCGTGTTCAGTAAAGTGT 60.202 41.667 0.00 0.00 0.00 3.55
605 614 3.717830 CGTAATCGTTTTCCGTGTTCAG 58.282 45.455 0.00 0.00 37.94 3.02
620 629 6.360329 ACAAGACATTTTGAACGACGTAATC 58.640 36.000 0.00 0.00 0.00 1.75
626 635 8.609478 TTCTTTTACAAGACATTTTGAACGAC 57.391 30.769 0.00 0.00 38.86 4.34
649 658 1.212616 CGATCGATGTCCCAGCTTTC 58.787 55.000 10.26 0.00 0.00 2.62
692 701 1.980772 GCACCCAGCCAGCTTCATT 60.981 57.895 0.00 0.00 37.23 2.57
707 716 2.712969 GACGTACGTAATCGATCTGCAC 59.287 50.000 22.87 0.00 40.62 4.57
861 870 2.888863 GAGGAGCCAGTGGTCGAG 59.111 66.667 11.74 0.00 39.95 4.04
862 871 3.062466 CGAGGAGCCAGTGGTCGA 61.062 66.667 13.20 0.00 39.95 4.20
864 873 2.574399 GACGAGGAGCCAGTGGTC 59.426 66.667 11.74 7.10 38.29 4.02
865 874 2.997897 GGACGAGGAGCCAGTGGT 60.998 66.667 11.74 0.00 0.00 4.16
866 875 2.681778 AGGACGAGGAGCCAGTGG 60.682 66.667 4.20 4.20 0.00 4.00
867 876 1.254284 AAGAGGACGAGGAGCCAGTG 61.254 60.000 0.00 0.00 0.00 3.66
868 877 0.543174 AAAGAGGACGAGGAGCCAGT 60.543 55.000 0.00 0.00 0.00 4.00
869 878 1.475403 TAAAGAGGACGAGGAGCCAG 58.525 55.000 0.00 0.00 0.00 4.85
870 879 2.160721 ATAAAGAGGACGAGGAGCCA 57.839 50.000 0.00 0.00 0.00 4.75
871 880 4.158209 GGTATATAAAGAGGACGAGGAGCC 59.842 50.000 0.00 0.00 0.00 4.70
872 881 4.142643 CGGTATATAAAGAGGACGAGGAGC 60.143 50.000 0.00 0.00 0.00 4.70
873 882 4.395542 CCGGTATATAAAGAGGACGAGGAG 59.604 50.000 0.00 0.00 0.00 3.69
874 883 4.330250 CCGGTATATAAAGAGGACGAGGA 58.670 47.826 0.00 0.00 0.00 3.71
879 888 2.603953 GCGCCGGTATATAAAGAGGAC 58.396 52.381 1.90 0.00 0.00 3.85
918 930 4.388499 AGGCGGTGGTGTTAGCGG 62.388 66.667 0.00 0.00 41.47 5.52
950 963 1.216710 GCGTGTGGAGGAGGAAGAG 59.783 63.158 0.00 0.00 0.00 2.85
1525 1547 4.777896 ACTGCCTCTGGAATCTAGTGTTAA 59.222 41.667 0.00 0.00 0.00 2.01
1547 1587 4.040952 AGCTAGACCAATCCATCCACATAC 59.959 45.833 0.00 0.00 0.00 2.39
1554 1594 4.142609 TGACAAGCTAGACCAATCCATC 57.857 45.455 0.00 0.00 0.00 3.51
1561 1615 5.865085 AGTATTTGTTGACAAGCTAGACCA 58.135 37.500 0.00 0.00 37.15 4.02
1562 1616 6.803154 AAGTATTTGTTGACAAGCTAGACC 57.197 37.500 0.00 0.00 37.15 3.85
1585 1647 7.448161 TGCAACAACTACAGTTACCTAGTAGTA 59.552 37.037 11.37 0.00 45.49 1.82
1588 1650 6.653526 TGCAACAACTACAGTTACCTAGTA 57.346 37.500 0.00 0.00 36.32 1.82
1589 1651 5.540400 TGCAACAACTACAGTTACCTAGT 57.460 39.130 0.00 0.00 36.32 2.57
1590 1652 5.163854 GCATGCAACAACTACAGTTACCTAG 60.164 44.000 14.21 0.00 36.32 3.02
1591 1653 4.693566 GCATGCAACAACTACAGTTACCTA 59.306 41.667 14.21 0.00 36.32 3.08
1592 1654 3.502211 GCATGCAACAACTACAGTTACCT 59.498 43.478 14.21 0.00 36.32 3.08
1593 1655 3.252215 TGCATGCAACAACTACAGTTACC 59.748 43.478 20.30 0.00 36.32 2.85
1594 1656 4.481930 TGCATGCAACAACTACAGTTAC 57.518 40.909 20.30 0.00 36.32 2.50
1595 1657 5.045668 CATGCATGCAACAACTACAGTTA 57.954 39.130 26.68 0.00 36.32 2.24
1596 1658 3.904571 CATGCATGCAACAACTACAGTT 58.095 40.909 26.68 0.00 39.12 3.16
1646 1749 7.916977 GTGAGCTGAAACAATCAATTGCATATA 59.083 33.333 0.00 0.00 41.38 0.86
1647 1750 6.755141 GTGAGCTGAAACAATCAATTGCATAT 59.245 34.615 0.00 0.00 41.38 1.78
1674 1805 0.375454 TTACACATAATGGCGCGCAC 59.625 50.000 34.42 22.27 0.00 5.34
1675 1806 1.087501 TTTACACATAATGGCGCGCA 58.912 45.000 34.42 19.50 0.00 6.09
1676 1807 1.063469 AGTTTACACATAATGGCGCGC 59.937 47.619 25.94 25.94 0.00 6.86
1678 1809 5.875930 AGTTAAGTTTACACATAATGGCGC 58.124 37.500 0.00 0.00 0.00 6.53
1679 1810 8.415192 TCTAGTTAAGTTTACACATAATGGCG 57.585 34.615 0.00 0.00 0.00 5.69
1768 2071 8.657074 TTTAATGTTCATCCGTCCTATTAGTG 57.343 34.615 0.00 0.00 0.00 2.74
1776 2088 8.527567 TTTTTGAATTTAATGTTCATCCGTCC 57.472 30.769 5.07 0.00 35.68 4.79
1806 2163 8.931775 CCTAGTTTTATTTTTGAATTTTCCCGG 58.068 33.333 0.00 0.00 0.00 5.73
1828 2186 9.610705 CCCATGTTTGATATCTGAATATCCTAG 57.389 37.037 3.98 0.00 42.10 3.02
1829 2187 9.116080 ACCCATGTTTGATATCTGAATATCCTA 57.884 33.333 3.98 0.00 42.10 2.94
1830 2188 7.886970 CACCCATGTTTGATATCTGAATATCCT 59.113 37.037 3.98 0.00 42.10 3.24
1831 2189 7.362401 GCACCCATGTTTGATATCTGAATATCC 60.362 40.741 3.98 0.00 42.10 2.59
1832 2190 7.362401 GGCACCCATGTTTGATATCTGAATATC 60.362 40.741 3.98 0.00 42.79 1.63
1833 2191 6.435277 GGCACCCATGTTTGATATCTGAATAT 59.565 38.462 3.98 0.81 0.00 1.28
1835 2193 4.586001 GGCACCCATGTTTGATATCTGAAT 59.414 41.667 3.98 0.00 0.00 2.57
1838 2196 3.996150 GGCACCCATGTTTGATATCTG 57.004 47.619 3.98 0.00 0.00 2.90
1854 2212 1.972872 CATGGGAGTAGATTGGGCAC 58.027 55.000 0.00 0.00 0.00 5.01
1855 2213 0.183492 GCATGGGAGTAGATTGGGCA 59.817 55.000 0.00 0.00 0.00 5.36
1856 2214 0.886490 CGCATGGGAGTAGATTGGGC 60.886 60.000 3.11 0.00 0.00 5.36
1857 2215 0.250467 CCGCATGGGAGTAGATTGGG 60.250 60.000 12.02 0.00 38.47 4.12
1858 2216 0.758734 TCCGCATGGGAGTAGATTGG 59.241 55.000 12.02 0.00 40.94 3.16
1867 2225 2.268920 GCAGAACTCCGCATGGGA 59.731 61.111 12.02 7.04 44.68 4.37
1869 2227 1.298157 TTTCGCAGAACTCCGCATGG 61.298 55.000 0.00 0.00 45.90 3.66
1870 2228 0.516877 TTTTCGCAGAACTCCGCATG 59.483 50.000 0.00 0.00 45.90 4.06
1871 2229 1.234821 TTTTTCGCAGAACTCCGCAT 58.765 45.000 0.00 0.00 45.90 4.73
1872 2230 2.696566 TTTTTCGCAGAACTCCGCA 58.303 47.368 0.00 0.00 45.90 5.69
1887 2245 7.174946 ACTGAGAATACCACGAATGTCATTTTT 59.825 33.333 0.00 0.00 0.00 1.94
1888 2246 6.655003 ACTGAGAATACCACGAATGTCATTTT 59.345 34.615 0.00 0.00 0.00 1.82
1893 2251 7.591006 TTTTACTGAGAATACCACGAATGTC 57.409 36.000 0.00 0.00 0.00 3.06
1900 2258 9.665264 CTTTTGTCTTTTTACTGAGAATACCAC 57.335 33.333 0.00 0.00 0.00 4.16
1906 2264 9.408648 AGGATTCTTTTGTCTTTTTACTGAGAA 57.591 29.630 0.00 0.00 0.00 2.87
1907 2265 8.980481 AGGATTCTTTTGTCTTTTTACTGAGA 57.020 30.769 0.00 0.00 0.00 3.27
1913 2271 8.855110 TGCACATAGGATTCTTTTGTCTTTTTA 58.145 29.630 0.00 0.00 0.00 1.52
1919 2277 6.913170 TCTTTGCACATAGGATTCTTTTGTC 58.087 36.000 0.00 0.00 0.00 3.18
1921 2279 7.869429 AGTTTCTTTGCACATAGGATTCTTTTG 59.131 33.333 0.00 0.00 0.00 2.44
1923 2281 7.530426 AGTTTCTTTGCACATAGGATTCTTT 57.470 32.000 0.00 0.00 0.00 2.52
1926 2284 9.294030 CAAATAGTTTCTTTGCACATAGGATTC 57.706 33.333 0.00 0.00 0.00 2.52
1927 2285 8.253113 CCAAATAGTTTCTTTGCACATAGGATT 58.747 33.333 0.00 0.00 33.27 3.01
1928 2286 7.147846 CCCAAATAGTTTCTTTGCACATAGGAT 60.148 37.037 0.00 0.00 33.27 3.24
1929 2287 6.152661 CCCAAATAGTTTCTTTGCACATAGGA 59.847 38.462 0.00 0.00 33.27 2.94
1930 2288 6.071391 ACCCAAATAGTTTCTTTGCACATAGG 60.071 38.462 0.00 0.00 33.27 2.57
1931 2289 6.808212 CACCCAAATAGTTTCTTTGCACATAG 59.192 38.462 0.00 0.00 33.27 2.23
1933 2291 5.511202 CCACCCAAATAGTTTCTTTGCACAT 60.511 40.000 0.00 0.00 33.27 3.21
1934 2292 4.202202 CCACCCAAATAGTTTCTTTGCACA 60.202 41.667 0.00 0.00 33.27 4.57
1935 2293 4.038642 TCCACCCAAATAGTTTCTTTGCAC 59.961 41.667 0.00 0.00 33.27 4.57
1937 2295 4.864704 TCCACCCAAATAGTTTCTTTGC 57.135 40.909 0.00 0.00 33.27 3.68
1938 2296 6.588719 TGATCCACCCAAATAGTTTCTTTG 57.411 37.500 0.00 0.00 34.17 2.77
1942 2300 6.365520 ACCTATGATCCACCCAAATAGTTTC 58.634 40.000 0.00 0.00 0.00 2.78
1943 2301 6.341408 ACCTATGATCCACCCAAATAGTTT 57.659 37.500 0.00 0.00 0.00 2.66
1944 2302 5.454755 CGACCTATGATCCACCCAAATAGTT 60.455 44.000 0.00 0.00 0.00 2.24
1945 2303 4.040461 CGACCTATGATCCACCCAAATAGT 59.960 45.833 0.00 0.00 0.00 2.12
1946 2304 4.040461 ACGACCTATGATCCACCCAAATAG 59.960 45.833 0.00 0.00 0.00 1.73
1948 2306 2.777692 ACGACCTATGATCCACCCAAAT 59.222 45.455 0.00 0.00 0.00 2.32
1949 2307 2.193127 ACGACCTATGATCCACCCAAA 58.807 47.619 0.00 0.00 0.00 3.28
1950 2308 1.874129 ACGACCTATGATCCACCCAA 58.126 50.000 0.00 0.00 0.00 4.12
1951 2309 2.091499 AGTACGACCTATGATCCACCCA 60.091 50.000 0.00 0.00 0.00 4.51
1952 2310 2.296471 CAGTACGACCTATGATCCACCC 59.704 54.545 0.00 0.00 0.00 4.61
1954 2312 5.961396 ATACAGTACGACCTATGATCCAC 57.039 43.478 0.00 0.00 0.00 4.02
1955 2313 6.971726 AAATACAGTACGACCTATGATCCA 57.028 37.500 0.00 0.00 0.00 3.41
1957 2315 9.182933 GAAGAAAATACAGTACGACCTATGATC 57.817 37.037 0.00 0.00 0.00 2.92
1958 2316 7.861372 CGAAGAAAATACAGTACGACCTATGAT 59.139 37.037 0.00 0.00 0.00 2.45
1960 2318 6.971184 ACGAAGAAAATACAGTACGACCTATG 59.029 38.462 0.00 0.00 0.00 2.23
1961 2319 7.093322 ACGAAGAAAATACAGTACGACCTAT 57.907 36.000 0.00 0.00 0.00 2.57
1963 2321 5.048504 TGACGAAGAAAATACAGTACGACCT 60.049 40.000 0.00 0.00 0.00 3.85
1964 2322 5.060200 GTGACGAAGAAAATACAGTACGACC 59.940 44.000 0.00 0.00 0.00 4.79
1965 2323 5.855395 AGTGACGAAGAAAATACAGTACGAC 59.145 40.000 0.00 0.00 0.00 4.34
1966 2324 5.854866 CAGTGACGAAGAAAATACAGTACGA 59.145 40.000 0.00 0.00 0.00 3.43
1967 2325 5.854866 TCAGTGACGAAGAAAATACAGTACG 59.145 40.000 0.00 0.00 0.00 3.67
1968 2326 7.813852 ATCAGTGACGAAGAAAATACAGTAC 57.186 36.000 0.00 0.00 0.00 2.73
1969 2327 8.517056 TGTATCAGTGACGAAGAAAATACAGTA 58.483 33.333 0.00 0.00 0.00 2.74
1970 2328 7.375834 TGTATCAGTGACGAAGAAAATACAGT 58.624 34.615 0.00 0.00 0.00 3.55
1971 2329 7.812309 TGTATCAGTGACGAAGAAAATACAG 57.188 36.000 0.00 0.00 0.00 2.74
1972 2330 8.771920 AATGTATCAGTGACGAAGAAAATACA 57.228 30.769 0.00 0.00 34.10 2.29
1973 2331 8.328864 GGAATGTATCAGTGACGAAGAAAATAC 58.671 37.037 0.00 0.00 0.00 1.89
1974 2332 8.258007 AGGAATGTATCAGTGACGAAGAAAATA 58.742 33.333 0.00 0.00 0.00 1.40
1975 2333 7.106239 AGGAATGTATCAGTGACGAAGAAAAT 58.894 34.615 0.00 0.00 0.00 1.82
1976 2334 6.464222 AGGAATGTATCAGTGACGAAGAAAA 58.536 36.000 0.00 0.00 0.00 2.29
1977 2335 6.037786 AGGAATGTATCAGTGACGAAGAAA 57.962 37.500 0.00 0.00 0.00 2.52
1978 2336 5.661056 AGGAATGTATCAGTGACGAAGAA 57.339 39.130 0.00 0.00 0.00 2.52
1979 2337 5.410924 CAAGGAATGTATCAGTGACGAAGA 58.589 41.667 0.00 0.00 0.00 2.87
1980 2338 4.568359 CCAAGGAATGTATCAGTGACGAAG 59.432 45.833 0.00 0.00 0.00 3.79
1981 2339 4.020573 ACCAAGGAATGTATCAGTGACGAA 60.021 41.667 0.00 0.00 0.00 3.85
1982 2340 3.513912 ACCAAGGAATGTATCAGTGACGA 59.486 43.478 0.00 0.00 0.00 4.20
1983 2341 3.861840 ACCAAGGAATGTATCAGTGACG 58.138 45.455 0.00 0.00 0.00 4.35
1984 2342 7.865706 AAATACCAAGGAATGTATCAGTGAC 57.134 36.000 0.00 0.00 0.00 3.67
1985 2343 8.877864 AAAAATACCAAGGAATGTATCAGTGA 57.122 30.769 0.00 0.00 0.00 3.41
2008 2366 4.502259 CCCCCATGTGATTTTTCGTGAAAA 60.502 41.667 3.74 3.74 41.20 2.29
2009 2367 3.006323 CCCCCATGTGATTTTTCGTGAAA 59.994 43.478 0.00 0.00 0.00 2.69
2010 2368 2.560542 CCCCCATGTGATTTTTCGTGAA 59.439 45.455 0.00 0.00 0.00 3.18
2011 2369 2.166829 CCCCCATGTGATTTTTCGTGA 58.833 47.619 0.00 0.00 0.00 4.35
2012 2370 1.892474 ACCCCCATGTGATTTTTCGTG 59.108 47.619 0.00 0.00 0.00 4.35
2013 2371 2.302587 ACCCCCATGTGATTTTTCGT 57.697 45.000 0.00 0.00 0.00 3.85
2014 2372 3.616219 TCTACCCCCATGTGATTTTTCG 58.384 45.455 0.00 0.00 0.00 3.46
2015 2373 5.163416 CCAATCTACCCCCATGTGATTTTTC 60.163 44.000 0.00 0.00 0.00 2.29
2016 2374 4.716287 CCAATCTACCCCCATGTGATTTTT 59.284 41.667 0.00 0.00 0.00 1.94
2017 2375 4.289245 CCAATCTACCCCCATGTGATTTT 58.711 43.478 0.00 0.00 0.00 1.82
2018 2376 3.374098 CCCAATCTACCCCCATGTGATTT 60.374 47.826 0.00 0.00 0.00 2.17
2019 2377 2.177669 CCCAATCTACCCCCATGTGATT 59.822 50.000 0.00 0.00 0.00 2.57
2020 2378 1.782752 CCCAATCTACCCCCATGTGAT 59.217 52.381 0.00 0.00 0.00 3.06
2021 2379 1.221635 CCCAATCTACCCCCATGTGA 58.778 55.000 0.00 0.00 0.00 3.58
2022 2380 0.468029 GCCCAATCTACCCCCATGTG 60.468 60.000 0.00 0.00 0.00 3.21
2023 2381 0.923729 TGCCCAATCTACCCCCATGT 60.924 55.000 0.00 0.00 0.00 3.21
2024 2382 0.468029 GTGCCCAATCTACCCCCATG 60.468 60.000 0.00 0.00 0.00 3.66
2025 2383 1.655114 GGTGCCCAATCTACCCCCAT 61.655 60.000 0.00 0.00 0.00 4.00
2026 2384 2.313427 GGTGCCCAATCTACCCCCA 61.313 63.158 0.00 0.00 0.00 4.96
2027 2385 2.601299 GGTGCCCAATCTACCCCC 59.399 66.667 0.00 0.00 0.00 5.40
2028 2386 2.601299 GGGTGCCCAATCTACCCC 59.399 66.667 1.66 0.00 46.74 4.95
2038 2396 1.963515 GGATATGAAACATGGGTGCCC 59.036 52.381 0.00 0.00 0.00 5.36
2039 2397 1.963515 GGGATATGAAACATGGGTGCC 59.036 52.381 0.00 0.00 0.00 5.01
2040 2398 2.665165 TGGGATATGAAACATGGGTGC 58.335 47.619 0.00 0.00 0.00 5.01
2041 2399 4.535781 TCTTGGGATATGAAACATGGGTG 58.464 43.478 0.00 0.00 0.00 4.61
2042 2400 4.879295 TCTTGGGATATGAAACATGGGT 57.121 40.909 0.00 0.00 0.00 4.51
2043 2401 5.244626 GGAATCTTGGGATATGAAACATGGG 59.755 44.000 0.00 0.00 0.00 4.00
2044 2402 6.015688 CAGGAATCTTGGGATATGAAACATGG 60.016 42.308 0.00 0.00 0.00 3.66
2045 2403 6.774170 TCAGGAATCTTGGGATATGAAACATG 59.226 38.462 0.00 0.00 0.00 3.21
2046 2404 6.914665 TCAGGAATCTTGGGATATGAAACAT 58.085 36.000 0.00 0.00 0.00 2.71
2047 2405 6.325993 TCAGGAATCTTGGGATATGAAACA 57.674 37.500 0.00 0.00 0.00 2.83
2048 2406 7.830099 AATCAGGAATCTTGGGATATGAAAC 57.170 36.000 0.00 0.00 0.00 2.78
2049 2407 8.843308 AAAATCAGGAATCTTGGGATATGAAA 57.157 30.769 0.00 0.00 0.00 2.69
2050 2408 8.843308 AAAAATCAGGAATCTTGGGATATGAA 57.157 30.769 0.00 0.00 0.00 2.57
2097 2555 9.123902 CACTTCCCTGTATGAATATCAAATTCA 57.876 33.333 3.13 3.13 41.59 2.57
2100 2558 7.815383 TCCACTTCCCTGTATGAATATCAAAT 58.185 34.615 0.00 0.00 0.00 2.32
2104 2562 5.221722 TGCTCCACTTCCCTGTATGAATATC 60.222 44.000 0.00 0.00 0.00 1.63
2105 2563 4.660303 TGCTCCACTTCCCTGTATGAATAT 59.340 41.667 0.00 0.00 0.00 1.28
2107 2565 2.846206 TGCTCCACTTCCCTGTATGAAT 59.154 45.455 0.00 0.00 0.00 2.57
2113 2571 2.529744 GGGTGCTCCACTTCCCTGT 61.530 63.158 7.20 0.00 37.18 4.00
2115 2573 2.121963 TGGGTGCTCCACTTCCCT 60.122 61.111 7.20 0.00 41.46 4.20
2125 2583 1.845205 ACAGGAGCTCTTGGGTGCT 60.845 57.895 27.37 5.47 44.69 4.40
2126 2584 1.673665 CACAGGAGCTCTTGGGTGC 60.674 63.158 27.37 3.31 0.00 5.01
2127 2585 1.673665 GCACAGGAGCTCTTGGGTG 60.674 63.158 26.87 21.37 0.00 4.61
2128 2586 1.495579 ATGCACAGGAGCTCTTGGGT 61.496 55.000 26.87 7.65 34.99 4.51
2129 2587 0.323178 AATGCACAGGAGCTCTTGGG 60.323 55.000 27.37 25.33 34.99 4.12
2131 2589 2.925306 GCAAAATGCACAGGAGCTCTTG 60.925 50.000 23.14 23.14 44.26 3.02
2132 2590 1.271656 GCAAAATGCACAGGAGCTCTT 59.728 47.619 14.64 2.08 44.26 2.85
2133 2591 0.886563 GCAAAATGCACAGGAGCTCT 59.113 50.000 14.64 0.00 44.26 4.09
2134 2592 3.413522 GCAAAATGCACAGGAGCTC 57.586 52.632 4.71 4.71 44.26 4.09
2144 2602 6.526566 ACTAGTAGCGTATTAGCAAAATGC 57.473 37.500 0.00 0.00 45.46 3.56
2146 2604 9.890352 GTAGTACTAGTAGCGTATTAGCAAAAT 57.110 33.333 1.87 0.00 40.15 1.82
2147 2605 9.113838 AGTAGTACTAGTAGCGTATTAGCAAAA 57.886 33.333 8.55 0.00 40.15 2.44
2148 2606 8.668510 AGTAGTACTAGTAGCGTATTAGCAAA 57.331 34.615 8.55 0.00 40.15 3.68
2150 2608 8.668510 AAAGTAGTACTAGTAGCGTATTAGCA 57.331 34.615 10.68 0.00 40.15 3.49
2178 2671 7.445096 TGTTCAAGTGATGTCTTTCACATGTAT 59.555 33.333 0.00 0.00 46.53 2.29
2304 2811 2.325761 CGGACCTCACGTCAAAGTAAG 58.674 52.381 0.00 0.00 43.95 2.34
2330 2837 4.513442 TCCAAGAAATAACCTGATGGACG 58.487 43.478 0.00 0.00 37.04 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.