AutoCloner

Multiple sequence alignment - TraesCS5B01G363200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G363200	chr5B	100.000	2627	0	0	1	2627	542296900	542294274	0.000000e+00	4852
1	TraesCS5B01G363200	chr5B	82.042	568	35	33	1284	1817	542320067	542319533	3.130000e-114	422
2	TraesCS5B01G363200	chr5B	82.530	498	56	21	1149	1627	542331441	542330956	2.430000e-110	409
3	TraesCS5B01G363200	chr5B	88.235	255	16	10	1996	2248	542318920	542318678	2.560000e-75	292
4	TraesCS5B01G363200	chr5B	82.192	146	18	5	2018	2156	542330364	542330220	4.590000e-23	119
5	TraesCS5B01G363200	chr5D	89.427	1135	55	18	645	1738	445056663	445055553	0.000000e+00	1371
6	TraesCS5B01G363200	chr5D	90.711	689	36	15	355	1035	444977665	444976997	0.000000e+00	893
7	TraesCS5B01G363200	chr5D	87.046	633	33	7	1137	1730	444976576	444975954	0.000000e+00	669
8	TraesCS5B01G363200	chr5D	94.444	360	14	3	1	358	444978623	444978268	1.370000e-152	549
9	TraesCS5B01G363200	chr5D	91.361	382	20	7	1974	2354	444975951	444975582	6.490000e-141	510
10	TraesCS5B01G363200	chr5D	90.000	370	17	8	1	357	445057451	445057089	6.620000e-126	460
11	TraesCS5B01G363200	chr5D	84.016	488	50	18	1163	1627	445072940	445072458	6.670000e-121	444
12	TraesCS5B01G363200	chr5D	83.272	544	27	26	1175	1656	445062933	445062392	2.400000e-120	442
13	TraesCS5B01G363200	chr5D	96.565	262	7	1	2368	2627	444975598	444975337	1.440000e-117	433
14	TraesCS5B01G363200	chr5D	82.780	482	39	20	1845	2294	445055268	445054799	8.820000e-105	390
15	TraesCS5B01G363200	chr5D	91.186	295	10	5	376	658	445056974	445056684	1.140000e-103	387
16	TraesCS5B01G363200	chr5D	87.891	256	18	10	1996	2248	445061540	445061295	3.310000e-74	289
17	TraesCS5B01G363200	chr5D	83.986	281	23	9	2368	2626	445054496	445054216	1.560000e-62	250
18	TraesCS5B01G363200	chr5D	83.929	168	20	5	2015	2176	445111108	445110942	1.260000e-33	154
19	TraesCS5B01G363200	chr5D	82.877	146	17	5	2018	2156	445071954	445071810	9.870000e-25	124
20	TraesCS5B01G363200	chr5A	85.744	947	65	30	952	1837	562101262	562100325	0.000000e+00	937
21	TraesCS5B01G363200	chr5A	90.730	507	27	6	356	849	562102584	562102085	0.000000e+00	658
22	TraesCS5B01G363200	chr5A	91.746	315	18	3	1	311	562103378	562103068	5.190000e-117	431
23	TraesCS5B01G363200	chr5A	84.698	464	23	18	1284	1710	562108462	562108010	1.120000e-113	420
24	TraesCS5B01G363200	chr5A	82.800	500	46	20	1163	1627	562116970	562116476	6.770000e-111	411
25	TraesCS5B01G363200	chr5A	87.259	259	19	9	1996	2248	562107677	562107427	1.540000e-72	283
26	TraesCS5B01G363200	chr5A	87.665	227	21	6	2072	2294	562099723	562099500	9.330000e-65	257
27	TraesCS5B01G363200	chr5A	86.986	146	9	5	832	967	562101466	562101321	3.500000e-34	156
28	TraesCS5B01G363200	chr5A	92.593	81	6	0	1996	2076	562100064	562099984	1.650000e-22	117

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G363200	chr5B	542294274	542296900	2626	True	4852.000000	4852	100.000000	1	2627	1	chr5B.!!$R1	2626
1	TraesCS5B01G363200	chr5B	542318678	542320067	1389	True	357.000000	422	85.138500	1284	2248	2	chr5B.!!$R2	964
2	TraesCS5B01G363200	chr5B	542330220	542331441	1221	True	264.000000	409	82.361000	1149	2156	2	chr5B.!!$R3	1007
3	TraesCS5B01G363200	chr5D	444975337	444978623	3286	True	610.800000	893	92.025400	1	2627	5	chr5D.!!$R2	2626
4	TraesCS5B01G363200	chr5D	445054216	445062933	8717	True	512.714286	1371	86.934571	1	2626	7	chr5D.!!$R3	2625
5	TraesCS5B01G363200	chr5D	445071810	445072940	1130	True	284.000000	444	83.446500	1163	2156	2	chr5D.!!$R4	993
6	TraesCS5B01G363200	chr5A	562099500	562103378	3878	True	426.000000	937	89.244000	1	2294	6	chr5A.!!$R2	2293
7	TraesCS5B01G363200	chr5A	562107427	562108462	1035	True	351.500000	420	85.978500	1284	2248	2	chr5A.!!$R3	964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
253	5744	0.181824	GGCCGGGGCTTAGACAAATA	59.818	55.0	14.22	0.0	41.6	1.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2196	10949	0.263468	TAGTCCGATCATGGGGGTGA	59.737	55.0	0.0	0.0	0.0	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	5540	1.149148	GTCGCCTTCTGTTTGGACTC	58.851	55.000	0.00	0.00	0.00	3.36
72	5555	8.209917	TGTTTGGACTCTCTTTTAAGTTCTTC	57.790	34.615	0.00	0.00	0.00	2.87
104	5595	8.782533	ACTTTTCGTAGTTGCTTTAAAGATTG	57.217	30.769	19.48	1.26	0.00	2.67
157	5648	7.411486	TCTCTAACTTCCTCTCGATGAAAAT	57.589	36.000	0.00	0.00	0.00	1.82
233	5724	8.375506	TGTCTCCTTAACTAAGATCATTTGTGT	58.624	33.333	0.00	0.00	35.33	3.72
252	5743	1.076995	GGCCGGGGCTTAGACAAAT	60.077	57.895	14.22	0.00	41.60	2.32
253	5744	0.181824	GGCCGGGGCTTAGACAAATA	59.818	55.000	14.22	0.00	41.60	1.40
254	5745	1.594331	GCCGGGGCTTAGACAAATAG	58.406	55.000	2.18	0.00	38.26	1.73
255	5746	1.594331	CCGGGGCTTAGACAAATAGC	58.406	55.000	0.00	0.00	0.00	2.97
450	6868	4.563184	GTGAAAATGACAGGACGTAGCTAG	59.437	45.833	0.00	0.00	0.00	3.42
451	6869	2.873133	AATGACAGGACGTAGCTAGC	57.127	50.000	6.62	6.62	0.00	3.42
452	6870	2.060050	ATGACAGGACGTAGCTAGCT	57.940	50.000	23.12	23.12	0.00	3.32
453	6871	2.704464	TGACAGGACGTAGCTAGCTA	57.296	50.000	20.67	20.67	0.00	3.32
462	6884	1.070041	CGTAGCTAGCTACTGCGGTAC	60.070	57.143	38.62	22.01	44.80	3.34
464	6886	0.395311	AGCTAGCTACTGCGGTACCA	60.395	55.000	17.69	0.00	45.42	3.25
557	6994	1.170919	ACGTCGTCCCAGATATCCCG	61.171	60.000	0.00	0.00	0.00	5.14
642	7084	1.615392	AGTTGATGTTCAGCCCAAAGC	59.385	47.619	0.00	0.00	44.25	3.51
847	7972	1.552226	CACGCGACGCTCCTTTATTA	58.448	50.000	15.93	0.00	0.00	0.98
1031	8246	1.290324	CTGCACTGTACAGAGCCGT	59.710	57.895	33.17	10.47	43.04	5.68
1035	8250	1.228769	ACTGTACAGAGCCGTCCCA	60.229	57.895	29.30	0.00	0.00	4.37
1037	8252	1.228769	TGTACAGAGCCGTCCCAGT	60.229	57.895	0.00	0.00	0.00	4.00
1296	8854	3.075005	GCGTCCCCTGCTACTCCA	61.075	66.667	0.00	0.00	0.00	3.86
1505	9123	1.280457	CTCTGGGGGTACTCTGCTTT	58.720	55.000	0.00	0.00	0.00	3.51
1656	9296	2.168521	TGTAGCCAGCACTAGATTCCAC	59.831	50.000	0.00	0.00	0.00	4.02
1657	9297	1.279496	AGCCAGCACTAGATTCCACA	58.721	50.000	0.00	0.00	0.00	4.17
1658	9298	1.842562	AGCCAGCACTAGATTCCACAT	59.157	47.619	0.00	0.00	0.00	3.21
1659	9299	2.240667	AGCCAGCACTAGATTCCACATT	59.759	45.455	0.00	0.00	0.00	2.71
1660	9300	2.615912	GCCAGCACTAGATTCCACATTC	59.384	50.000	0.00	0.00	0.00	2.67
1661	9301	3.209410	CCAGCACTAGATTCCACATTCC	58.791	50.000	0.00	0.00	0.00	3.01
1662	9302	3.370846	CCAGCACTAGATTCCACATTCCA	60.371	47.826	0.00	0.00	0.00	3.53
1722	9375	0.618981	AACAAGTGCCCCTAGGTAGC	59.381	55.000	8.29	11.01	34.57	3.58
1834	9521	8.845227	CAGCTCACCCATCTATATATACTACTG	58.155	40.741	0.00	0.00	0.00	2.74
1835	9522	8.001875	AGCTCACCCATCTATATATACTACTGG	58.998	40.741	0.00	0.00	0.00	4.00
1836	9523	7.999545	GCTCACCCATCTATATATACTACTGGA	59.000	40.741	5.29	0.00	0.00	3.86
1837	9524	9.344772	CTCACCCATCTATATATACTACTGGAC	57.655	40.741	5.29	0.00	0.00	4.02
1838	9525	9.070210	TCACCCATCTATATATACTACTGGACT	57.930	37.037	5.29	0.00	0.00	3.85
1841	9677	9.344772	CCCATCTATATATACTACTGGACTGAC	57.655	40.741	5.29	0.00	0.00	3.51
1863	9706	6.873605	TGACTACTGGATAACAAATCACACAG	59.126	38.462	0.00	0.00	0.00	3.66
1918	10178	8.778358	CCATCTATCTAAGAAACAACTAATGCC	58.222	37.037	0.00	0.00	37.89	4.40
1920	10180	8.718102	TCTATCTAAGAAACAACTAATGCCAC	57.282	34.615	0.00	0.00	0.00	5.01
1924	10187	8.492673	TCTAAGAAACAACTAATGCCACTATG	57.507	34.615	0.00	0.00	0.00	2.23
1926	10189	9.378551	CTAAGAAACAACTAATGCCACTATGTA	57.621	33.333	0.00	0.00	0.00	2.29
1928	10191	7.394816	AGAAACAACTAATGCCACTATGTACT	58.605	34.615	0.00	0.00	0.00	2.73
1929	10192	7.549488	AGAAACAACTAATGCCACTATGTACTC	59.451	37.037	0.00	0.00	0.00	2.59
1966	10327	2.015736	CACTTGCCCAGTGCTACTAG	57.984	55.000	0.46	0.00	46.70	2.57
1967	10328	0.250513	ACTTGCCCAGTGCTACTAGC	59.749	55.000	0.61	0.61	42.82	3.42
1968	10329	0.539051	CTTGCCCAGTGCTACTAGCT	59.461	55.000	9.49	0.00	42.97	3.32
1984	10380	4.354662	ACTAGCTAGTAGGTGGCTTCTTT	58.645	43.478	24.97	0.00	40.91	2.52
1985	10381	5.516984	ACTAGCTAGTAGGTGGCTTCTTTA	58.483	41.667	24.97	0.00	40.91	1.85
1998	10418	2.678336	GCTTCTTTATAGCACCGCAGTT	59.322	45.455	0.00	0.00	38.51	3.16
2176	10929	3.840124	ATTACAACACCTAGCCTAGCC	57.160	47.619	0.00	0.00	0.00	3.93
2180	10933	1.069358	CAACACCTAGCCTAGCCTAGC	59.931	57.143	2.10	0.00	34.74	3.42
2189	10942	1.698506	CCTAGCCTAGCTGCTACACT	58.301	55.000	5.02	8.43	42.75	3.55
2195	10948	2.036992	GCCTAGCTGCTACACTGATCAT	59.963	50.000	5.02	0.00	0.00	2.45
2196	10949	3.494048	GCCTAGCTGCTACACTGATCATT	60.494	47.826	5.02	0.00	0.00	2.57
2210	10966	2.430465	GATCATTCACCCCCATGATCG	58.570	52.381	6.42	0.00	43.59	3.69
2219	10978	1.704641	CCCCATGATCGGACTAGACA	58.295	55.000	0.00	0.00	0.00	3.41
2285	11045	9.029243	CAGATTTATATGCTTGGAGATCGATAC	57.971	37.037	0.00	0.00	0.00	2.24
2290	11050	5.991933	ATGCTTGGAGATCGATACATACT	57.008	39.130	0.00	0.00	0.00	2.12
2291	11051	5.126396	TGCTTGGAGATCGATACATACTG	57.874	43.478	0.00	0.00	0.00	2.74
2292	11052	3.923461	GCTTGGAGATCGATACATACTGC	59.077	47.826	0.00	0.00	0.00	4.40
2293	11053	4.321601	GCTTGGAGATCGATACATACTGCT	60.322	45.833	0.00	0.00	0.00	4.24
2294	11054	5.106118	GCTTGGAGATCGATACATACTGCTA	60.106	44.000	0.00	0.00	0.00	3.49
2302	11328	6.003234	TCGATACATACTGCTAGCTCTTTC	57.997	41.667	17.23	1.75	0.00	2.62
2318	11344	5.249622	AGCTCTTTCTAAAAAGCCTCTACCT	59.750	40.000	0.00	0.00	41.44	3.08
2319	11345	5.941058	GCTCTTTCTAAAAAGCCTCTACCTT	59.059	40.000	0.00	0.00	41.44	3.50
2320	11346	7.038231	AGCTCTTTCTAAAAAGCCTCTACCTTA	60.038	37.037	0.00	0.00	41.44	2.69
2375	11401	4.619437	TTTTTGCGAGAAAACCTAACGT	57.381	36.364	0.00	0.00	0.00	3.99
2376	11402	5.731599	TTTTTGCGAGAAAACCTAACGTA	57.268	34.783	0.00	0.00	0.00	3.57
2377	11403	5.927954	TTTTGCGAGAAAACCTAACGTAT	57.072	34.783	0.00	0.00	0.00	3.06
2378	11404	5.520022	TTTGCGAGAAAACCTAACGTATC	57.480	39.130	0.00	0.00	0.00	2.24
2379	11405	4.445452	TGCGAGAAAACCTAACGTATCT	57.555	40.909	0.00	0.00	0.00	1.98
2380	11406	4.813027	TGCGAGAAAACCTAACGTATCTT	58.187	39.130	0.00	0.00	0.00	2.40
2381	11407	5.232463	TGCGAGAAAACCTAACGTATCTTT	58.768	37.500	0.00	0.00	0.00	2.52
2382	11408	5.697633	TGCGAGAAAACCTAACGTATCTTTT	59.302	36.000	0.00	0.00	0.00	2.27
2383	11409	6.203338	TGCGAGAAAACCTAACGTATCTTTTT	59.797	34.615	0.00	0.00	0.00	1.94
2402	11428	6.313411	TCTTTTTGGCTTCACAGTTTTTGATG	59.687	34.615	0.00	0.00	0.00	3.07
2514	11556	1.534595	GCCAAGCGCGAAATGAATGAT	60.535	47.619	12.10	0.00	0.00	2.45
2516	11558	3.291585	CCAAGCGCGAAATGAATGATAC	58.708	45.455	12.10	0.00	0.00	2.24
2582	11624	4.215399	AGTCCACAAATTACGACATTGGTG	59.785	41.667	10.27	10.27	37.70	4.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	5562	8.617809	TCAATCTTTAAAGCAACTACGAAAAGT	58.382	29.630	10.51	0.00	0.00	2.66
104	5595	4.879104	TCGAAGTCGTAGAAAGGATCTC	57.121	45.455	0.00	0.00	39.69	2.75
157	5648	9.830975	TCTATGAATATTCACATCGAAGGAAAA	57.169	29.630	20.19	0.00	40.49	2.29
233	5724	1.858739	ATTTGTCTAAGCCCCGGCCA	61.859	55.000	2.24	0.00	43.17	5.36
371	6789	3.054878	ACGTTTAGTTGTCGTCATCCAC	58.945	45.455	0.00	0.00	32.26	4.02
557	6994	2.077687	AAATGATGCATGGGGGAGAC	57.922	50.000	2.46	0.00	0.00	3.36
642	7084	0.439985	CGACAGATCAAAGGTGCACG	59.560	55.000	11.45	0.00	0.00	5.34
847	7972	4.240096	CATGAAAAAGAAAAGCGGCAGAT	58.760	39.130	1.45	0.00	0.00	2.90
953	8160	3.006323	TGCACAACTTCTTCTCTCTCTCC	59.994	47.826	0.00	0.00	0.00	3.71
985	8194	0.895100	TGCATCAACCAGTTCCCAGC	60.895	55.000	0.00	0.00	0.00	4.85
1037	8252	2.203788	AGAAGTGAGGCCGGTGGA	60.204	61.111	1.90	0.00	0.00	4.02
1219	8771	3.699894	CAGGTCCAGGCTCACGCT	61.700	66.667	0.00	0.00	36.09	5.07
1685	9333	4.776795	TGTTGACAAGCTAGACGTATCA	57.223	40.909	0.00	0.00	0.00	2.15
1722	9375	7.197071	TGTAACAACTAATTAAGCACCAGTG	57.803	36.000	0.00	0.00	0.00	3.66
1781	9437	6.226787	ACAATCAACTGCATAGCTATACTCC	58.773	40.000	5.77	0.00	0.00	3.85
1784	9440	7.919690	TGAAACAATCAACTGCATAGCTATAC	58.080	34.615	5.77	0.70	34.30	1.47
1834	9521	6.535508	GTGATTTGTTATCCAGTAGTCAGTCC	59.464	42.308	0.00	0.00	0.00	3.85
1835	9522	7.063544	GTGTGATTTGTTATCCAGTAGTCAGTC	59.936	40.741	0.00	0.00	0.00	3.51
1836	9523	6.874134	GTGTGATTTGTTATCCAGTAGTCAGT	59.126	38.462	0.00	0.00	0.00	3.41
1837	9524	6.873605	TGTGTGATTTGTTATCCAGTAGTCAG	59.126	38.462	0.00	0.00	0.00	3.51
1838	9525	6.764379	TGTGTGATTTGTTATCCAGTAGTCA	58.236	36.000	0.00	0.00	0.00	3.41
1841	9677	5.065218	GCCTGTGTGATTTGTTATCCAGTAG	59.935	44.000	0.00	0.00	0.00	2.57
1863	9706	7.278868	CGATTGATATAGTAAATTCAGAGGGCC	59.721	40.741	0.00	0.00	0.00	5.80
1918	10178	9.517609	GTCTTTAACATGTAGGAGTACATAGTG	57.482	37.037	0.00	0.00	46.36	2.74
1966	10327	5.221461	TGCTATAAAGAAGCCACCTACTAGC	60.221	44.000	0.00	0.00	39.30	3.42
1967	10328	6.217294	GTGCTATAAAGAAGCCACCTACTAG	58.783	44.000	0.00	0.00	39.30	2.57
1968	10329	5.070047	GGTGCTATAAAGAAGCCACCTACTA	59.930	44.000	0.00	0.00	39.30	1.82
1973	10368	1.940613	CGGTGCTATAAAGAAGCCACC	59.059	52.381	0.00	0.00	39.30	4.61
1976	10371	1.599542	CTGCGGTGCTATAAAGAAGCC	59.400	52.381	0.00	0.00	39.30	4.35
1984	10380	2.094597	ACGTACAAACTGCGGTGCTATA	60.095	45.455	0.00	0.00	31.13	1.31
1985	10381	1.337447	ACGTACAAACTGCGGTGCTAT	60.337	47.619	0.00	0.00	31.13	2.97
1998	10418	1.337703	AGTAACGACAGGCACGTACAA	59.662	47.619	5.05	0.00	43.16	2.41
2176	10929	4.744137	GTGAATGATCAGTGTAGCAGCTAG	59.256	45.833	0.00	0.00	35.88	3.42
2180	10933	3.201290	GGGTGAATGATCAGTGTAGCAG	58.799	50.000	0.00	0.00	35.88	4.24
2195	10948	0.620410	AGTCCGATCATGGGGGTGAA	60.620	55.000	0.00	0.00	0.00	3.18
2196	10949	0.263468	TAGTCCGATCATGGGGGTGA	59.737	55.000	0.00	0.00	0.00	4.02
2210	10966	5.176592	GTTGGGTGACTAAATGTCTAGTCC	58.823	45.833	8.00	1.24	44.89	3.85
2219	10978	3.117284	AGTTGGGTGTTGGGTGACTAAAT	60.117	43.478	0.00	0.00	30.16	1.40
2285	11045	7.405769	GCTTTTTAGAAAGAGCTAGCAGTATG	58.594	38.462	18.83	0.00	44.03	2.39
2290	11050	4.911390	AGGCTTTTTAGAAAGAGCTAGCA	58.089	39.130	18.83	0.00	44.03	3.49
2291	11051	5.182487	AGAGGCTTTTTAGAAAGAGCTAGC	58.818	41.667	6.62	6.62	44.03	3.42
2292	11052	6.759356	GGTAGAGGCTTTTTAGAAAGAGCTAG	59.241	42.308	14.88	0.00	44.03	3.42
2293	11053	6.440965	AGGTAGAGGCTTTTTAGAAAGAGCTA	59.559	38.462	14.88	4.75	44.03	3.32
2294	11054	5.249622	AGGTAGAGGCTTTTTAGAAAGAGCT	59.750	40.000	14.88	5.58	44.03	4.09
2302	11328	6.377146	TGCCAAATAAGGTAGAGGCTTTTTAG	59.623	38.462	0.00	0.00	42.46	1.85
2319	11345	9.344772	ACGTTAGGTGATTATTAATGCCAAATA	57.655	29.630	0.00	0.00	0.00	1.40
2320	11346	8.232913	ACGTTAGGTGATTATTAATGCCAAAT	57.767	30.769	0.00	0.00	0.00	2.32
2354	11380	4.619437	ACGTTAGGTTTTCTCGCAAAAA	57.381	36.364	0.00	0.00	0.00	1.94
2355	11381	5.697633	AGATACGTTAGGTTTTCTCGCAAAA	59.302	36.000	0.00	0.00	0.00	2.44
2356	11382	5.232463	AGATACGTTAGGTTTTCTCGCAAA	58.768	37.500	0.00	0.00	0.00	3.68
2357	11383	4.813027	AGATACGTTAGGTTTTCTCGCAA	58.187	39.130	0.00	0.00	0.00	4.85
2358	11384	4.445452	AGATACGTTAGGTTTTCTCGCA	57.555	40.909	0.00	0.00	0.00	5.10
2359	11385	5.774878	AAAGATACGTTAGGTTTTCTCGC	57.225	39.130	0.00	0.00	0.00	5.03
2360	11386	7.013529	CCAAAAAGATACGTTAGGTTTTCTCG	58.986	38.462	0.00	0.00	0.00	4.04
2361	11387	6.800408	GCCAAAAAGATACGTTAGGTTTTCTC	59.200	38.462	0.00	0.00	0.00	2.87
2362	11388	6.489022	AGCCAAAAAGATACGTTAGGTTTTCT	59.511	34.615	0.00	0.00	0.00	2.52
2363	11389	6.675026	AGCCAAAAAGATACGTTAGGTTTTC	58.325	36.000	0.00	0.00	0.00	2.29
2364	11390	6.644248	AGCCAAAAAGATACGTTAGGTTTT	57.356	33.333	0.00	0.00	0.00	2.43
2365	11391	6.263617	TGAAGCCAAAAAGATACGTTAGGTTT	59.736	34.615	0.00	0.00	0.00	3.27
2366	11392	5.766174	TGAAGCCAAAAAGATACGTTAGGTT	59.234	36.000	0.00	0.00	0.00	3.50
2367	11393	5.180680	GTGAAGCCAAAAAGATACGTTAGGT	59.819	40.000	0.00	0.00	0.00	3.08
2368	11394	5.180492	TGTGAAGCCAAAAAGATACGTTAGG	59.820	40.000	0.00	0.00	0.00	2.69
2369	11395	6.073222	ACTGTGAAGCCAAAAAGATACGTTAG	60.073	38.462	0.00	0.00	0.00	2.34
2370	11396	5.761234	ACTGTGAAGCCAAAAAGATACGTTA	59.239	36.000	0.00	0.00	0.00	3.18
2371	11397	4.578928	ACTGTGAAGCCAAAAAGATACGTT	59.421	37.500	0.00	0.00	0.00	3.99
2372	11398	4.134563	ACTGTGAAGCCAAAAAGATACGT	58.865	39.130	0.00	0.00	0.00	3.57
2373	11399	4.749245	ACTGTGAAGCCAAAAAGATACG	57.251	40.909	0.00	0.00	0.00	3.06
2374	11400	7.491048	TCAAAAACTGTGAAGCCAAAAAGATAC	59.509	33.333	0.00	0.00	0.00	2.24
2375	11401	7.551585	TCAAAAACTGTGAAGCCAAAAAGATA	58.448	30.769	0.00	0.00	0.00	1.98
2376	11402	6.405538	TCAAAAACTGTGAAGCCAAAAAGAT	58.594	32.000	0.00	0.00	0.00	2.40
2377	11403	5.788450	TCAAAAACTGTGAAGCCAAAAAGA	58.212	33.333	0.00	0.00	0.00	2.52
2378	11404	6.457257	CCATCAAAAACTGTGAAGCCAAAAAG	60.457	38.462	0.00	0.00	0.00	2.27
2379	11405	5.353678	CCATCAAAAACTGTGAAGCCAAAAA	59.646	36.000	0.00	0.00	0.00	1.94
2380	11406	4.874966	CCATCAAAAACTGTGAAGCCAAAA	59.125	37.500	0.00	0.00	0.00	2.44
2381	11407	4.440880	CCATCAAAAACTGTGAAGCCAAA	58.559	39.130	0.00	0.00	0.00	3.28
2382	11408	3.181467	CCCATCAAAAACTGTGAAGCCAA	60.181	43.478	0.00	0.00	0.00	4.52
2383	11409	2.364970	CCCATCAAAAACTGTGAAGCCA	59.635	45.455	0.00	0.00	0.00	4.75
2402	11428	1.022451	TTATTTCACGGTCGCTGCCC	61.022	55.000	0.00	0.00	0.00	5.36
2447	11473	2.540361	GCATGCGGATCAAGTTAAGCAG	60.540	50.000	0.00	0.00	38.04	4.24
2514	11556	5.790593	AGATCAAGCTTTAGAACCAACGTA	58.209	37.500	0.00	0.00	0.00	3.57
2516	11558	5.613358	AAGATCAAGCTTTAGAACCAACG	57.387	39.130	0.00	0.00	0.00	4.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.