Multiple sequence alignment - TraesCS5B01G362500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G362500 chr5B 100.000 2332 0 0 1 2332 541735786 541738117 0.000000e+00 4307.0
1 TraesCS5B01G362500 chr5B 76.578 491 68 25 1184 1658 541684369 541684828 2.330000e-55 226.0
2 TraesCS5B01G362500 chr5B 93.966 116 6 1 993 1108 541683178 541683292 8.570000e-40 174.0
3 TraesCS5B01G362500 chr5D 89.429 1050 37 33 664 1662 444852015 444853041 0.000000e+00 1256.0
4 TraesCS5B01G362500 chr5D 88.000 300 25 6 2033 2332 444856010 444856298 6.170000e-91 344.0
5 TraesCS5B01G362500 chr5D 76.667 510 64 33 1169 1658 444745003 444745477 5.010000e-57 231.0
6 TraesCS5B01G362500 chr5D 78.882 322 38 22 1738 2031 444855654 444855973 8.510000e-45 191.0
7 TraesCS5B01G362500 chr5D 98.387 62 1 0 1687 1748 444853403 444853464 2.450000e-20 110.0
8 TraesCS5B01G362500 chr5D 98.276 58 1 0 171 228 444851959 444852016 4.100000e-18 102.0
9 TraesCS5B01G362500 chr5A 87.068 781 44 23 664 1392 561692765 561693540 0.000000e+00 830.0
10 TraesCS5B01G362500 chr5A 78.478 381 52 18 1957 2330 561694624 561694981 3.020000e-54 222.0
11 TraesCS5B01G362500 chr5A 94.161 137 7 1 1474 1609 561693582 561693718 8.450000e-50 207.0
12 TraesCS5B01G362500 chr5A 93.636 110 6 1 998 1106 561688905 561689014 1.850000e-36 163.0
13 TraesCS5B01G362500 chr5A 78.305 295 20 14 1687 1940 561694274 561694565 1.440000e-32 150.0
14 TraesCS5B01G362500 chr6B 95.172 145 6 1 521 664 37385280 37385424 6.480000e-56 228.0
15 TraesCS5B01G362500 chr6B 93.919 148 8 1 518 664 334557264 334557411 3.020000e-54 222.0
16 TraesCS5B01G362500 chr4B 93.038 158 8 3 508 664 467129186 467129341 6.480000e-56 228.0
17 TraesCS5B01G362500 chr2B 95.172 145 6 1 521 664 628467543 628467687 6.480000e-56 228.0
18 TraesCS5B01G362500 chr3B 94.521 146 6 2 521 664 492811154 492811009 8.390000e-55 224.0
19 TraesCS5B01G362500 chr3B 89.412 170 12 5 500 664 257328947 257329115 2.350000e-50 209.0
20 TraesCS5B01G362500 chr3B 87.425 167 18 3 1 165 807131650 807131485 3.060000e-44 189.0
21 TraesCS5B01G362500 chr3B 97.222 36 1 0 1037 1072 245922850 245922815 6.960000e-06 62.1
22 TraesCS5B01G362500 chr1D 92.453 159 9 3 507 664 392150117 392150273 8.390000e-55 224.0
23 TraesCS5B01G362500 chr1D 90.361 83 8 0 1198 1280 42845525 42845443 2.450000e-20 110.0
24 TraesCS5B01G362500 chr1B 94.558 147 4 4 521 664 432755370 432755225 8.390000e-55 224.0
25 TraesCS5B01G362500 chr1B 93.151 146 8 2 521 664 568108428 568108283 1.820000e-51 213.0
26 TraesCS5B01G362500 chr1B 90.361 83 8 0 1198 1280 62681861 62681943 2.450000e-20 110.0
27 TraesCS5B01G362500 chr2D 87.898 157 17 2 11 165 650718925 650719081 1.420000e-42 183.0
28 TraesCS5B01G362500 chr2D 83.234 167 22 3 1 165 34001750 34001588 5.190000e-32 148.0
29 TraesCS5B01G362500 chr2D 97.222 36 1 0 1037 1072 397962785 397962750 6.960000e-06 62.1
30 TraesCS5B01G362500 chr3A 81.646 158 23 4 1 156 399109116 399109269 2.430000e-25 126.0
31 TraesCS5B01G362500 chr4A 81.818 154 23 2 13 165 478738578 478738429 8.750000e-25 124.0
32 TraesCS5B01G362500 chr4A 85.088 114 12 5 1 111 670214483 670214594 6.810000e-21 111.0
33 TraesCS5B01G362500 chr7D 79.518 166 33 1 1 165 563605487 563605652 1.460000e-22 117.0
34 TraesCS5B01G362500 chr3D 90.805 87 8 0 79 165 332234652 332234738 1.460000e-22 117.0
35 TraesCS5B01G362500 chr3D 84.034 119 17 2 1 117 422641764 422641646 1.890000e-21 113.0
36 TraesCS5B01G362500 chr3D 81.633 98 14 4 2154 2250 40795038 40795132 6.910000e-11 78.7
37 TraesCS5B01G362500 chr4D 82.114 123 18 3 2171 2292 439748736 439748617 4.100000e-18 102.0
38 TraesCS5B01G362500 chr7B 92.857 42 3 0 1028 1069 29687850 29687891 6.960000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G362500 chr5B 541735786 541738117 2331 False 4307.0 4307 100.0000 1 2332 1 chr5B.!!$F1 2331
1 TraesCS5B01G362500 chr5D 444851959 444856298 4339 False 400.6 1256 90.5948 171 2332 5 chr5D.!!$F2 2161
2 TraesCS5B01G362500 chr5A 561688905 561694981 6076 False 314.4 830 86.3296 664 2330 5 chr5A.!!$F1 1666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 482 0.031178 GTGCTTGCAACTTGGGTGAG 59.969 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2188 8433 0.322546 GGCACTAAAGTGGACCCCAG 60.323 60.0 11.86 0.0 45.72 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.713946 ACACCGCCAACCATGTAG 57.286 55.556 0.00 0.00 0.00 2.74
18 19 1.002624 ACACCGCCAACCATGTAGG 60.003 57.895 0.00 0.00 45.67 3.18
28 29 3.006672 CCATGTAGGTTCCCATCGC 57.993 57.895 0.00 0.00 0.00 4.58
30 31 0.180171 CATGTAGGTTCCCATCGCCA 59.820 55.000 0.00 0.00 0.00 5.69
31 32 0.180406 ATGTAGGTTCCCATCGCCAC 59.820 55.000 0.00 0.00 0.00 5.01
32 33 1.153229 GTAGGTTCCCATCGCCACC 60.153 63.158 0.00 0.00 0.00 4.61
33 34 2.727392 TAGGTTCCCATCGCCACCG 61.727 63.158 0.00 0.00 34.19 4.94
52 53 2.202810 GCAGCAGAGACGCTACCC 60.203 66.667 0.00 0.00 41.38 3.69
54 55 2.045242 AGCAGAGACGCTACCCGA 60.045 61.111 0.00 0.00 41.55 5.14
56 57 2.408241 GCAGAGACGCTACCCGACT 61.408 63.158 0.00 0.00 44.23 4.18
57 58 1.429825 CAGAGACGCTACCCGACTG 59.570 63.158 0.00 0.00 41.77 3.51
59 60 3.412879 GAGACGCTACCCGACTGCC 62.413 68.421 0.00 0.00 41.77 4.85
60 61 4.849329 GACGCTACCCGACTGCCG 62.849 72.222 0.00 0.00 41.02 5.69
80 81 4.087892 CCAGCCTCCCCACGTGAG 62.088 72.222 19.30 2.64 0.00 3.51
81 82 2.997315 CAGCCTCCCCACGTGAGA 60.997 66.667 19.30 12.51 31.26 3.27
82 83 2.997897 AGCCTCCCCACGTGAGAC 60.998 66.667 19.30 0.00 31.26 3.36
103 104 3.798758 GCCTCCGCCTCATAGGAT 58.201 61.111 0.00 0.00 37.67 3.24
105 106 0.902516 GCCTCCGCCTCATAGGATCT 60.903 60.000 0.00 0.00 37.67 2.75
106 107 0.894141 CCTCCGCCTCATAGGATCTG 59.106 60.000 0.00 0.00 37.67 2.90
109 110 1.080230 CGCCTCATAGGATCTGCCG 60.080 63.158 0.00 0.00 43.43 5.69
110 111 1.375268 GCCTCATAGGATCTGCCGC 60.375 63.158 0.00 0.00 43.43 6.53
111 112 2.052779 CCTCATAGGATCTGCCGCA 58.947 57.895 0.00 0.00 43.43 5.69
113 114 1.506493 CTCATAGGATCTGCCGCAAC 58.494 55.000 0.00 0.00 43.43 4.17
114 115 0.249447 TCATAGGATCTGCCGCAACG 60.249 55.000 0.00 0.00 43.43 4.10
115 116 0.249447 CATAGGATCTGCCGCAACGA 60.249 55.000 0.00 0.00 43.43 3.85
118 119 2.434185 GATCTGCCGCAACGACCA 60.434 61.111 0.00 0.00 0.00 4.02
119 120 2.740714 GATCTGCCGCAACGACCAC 61.741 63.158 0.00 0.00 0.00 4.16
127 128 3.353836 CAACGACCACCCGCCTTG 61.354 66.667 0.00 0.00 0.00 3.61
128 129 4.636435 AACGACCACCCGCCTTGG 62.636 66.667 0.00 0.00 40.32 3.61
130 131 4.096003 CGACCACCCGCCTTGGAT 62.096 66.667 2.48 0.00 42.00 3.41
131 132 2.124695 GACCACCCGCCTTGGATC 60.125 66.667 2.48 0.00 42.00 3.36
132 133 2.610859 ACCACCCGCCTTGGATCT 60.611 61.111 2.48 0.00 42.00 2.75
133 134 2.124570 CCACCCGCCTTGGATCTG 60.125 66.667 0.00 0.00 42.00 2.90
134 135 2.825836 CACCCGCCTTGGATCTGC 60.826 66.667 0.00 0.00 42.00 4.26
138 139 3.197790 CGCCTTGGATCTGCGGTG 61.198 66.667 10.23 3.60 44.29 4.94
139 140 3.512516 GCCTTGGATCTGCGGTGC 61.513 66.667 0.00 0.00 0.00 5.01
140 141 2.046023 CCTTGGATCTGCGGTGCA 60.046 61.111 0.00 0.00 36.92 4.57
168 169 2.281208 CCACCGCGACCCTTCAAA 60.281 61.111 8.23 0.00 0.00 2.69
169 170 1.674322 CCACCGCGACCCTTCAAAT 60.674 57.895 8.23 0.00 0.00 2.32
197 198 0.597118 CCACGGACGTTTTACACCGA 60.597 55.000 16.87 0.00 46.94 4.69
204 205 1.324134 ACGTTTTACACCGACACAACG 59.676 47.619 0.00 0.00 42.05 4.10
205 206 1.733706 GTTTTACACCGACACAACGC 58.266 50.000 0.00 0.00 0.00 4.84
208 209 1.492319 TTACACCGACACAACGCAGC 61.492 55.000 0.00 0.00 0.00 5.25
210 211 2.280797 ACCGACACAACGCAGCAT 60.281 55.556 0.00 0.00 0.00 3.79
211 212 1.005512 ACCGACACAACGCAGCATA 60.006 52.632 0.00 0.00 0.00 3.14
212 213 1.289109 ACCGACACAACGCAGCATAC 61.289 55.000 0.00 0.00 0.00 2.39
214 215 0.179250 CGACACAACGCAGCATACAC 60.179 55.000 0.00 0.00 0.00 2.90
215 216 0.165944 GACACAACGCAGCATACACC 59.834 55.000 0.00 0.00 0.00 4.16
217 218 1.301401 ACAACGCAGCATACACCGT 60.301 52.632 0.00 0.00 35.14 4.83
218 219 0.882927 ACAACGCAGCATACACCGTT 60.883 50.000 0.00 0.00 43.73 4.44
219 220 0.237235 CAACGCAGCATACACCGTTT 59.763 50.000 0.00 0.00 41.36 3.60
220 221 0.237235 AACGCAGCATACACCGTTTG 59.763 50.000 0.00 0.00 40.54 2.93
222 223 0.179225 CGCAGCATACACCGTTTGTC 60.179 55.000 0.00 0.00 39.91 3.18
223 224 0.179225 GCAGCATACACCGTTTGTCG 60.179 55.000 0.00 0.00 39.91 4.35
225 226 2.330286 CAGCATACACCGTTTGTCGTA 58.670 47.619 0.00 0.00 39.91 3.43
226 227 2.927477 CAGCATACACCGTTTGTCGTAT 59.073 45.455 0.00 0.00 39.91 3.06
228 229 2.924926 GCATACACCGTTTGTCGTATCA 59.075 45.455 0.00 0.00 39.91 2.15
229 230 3.000078 GCATACACCGTTTGTCGTATCAG 60.000 47.826 0.00 0.00 39.91 2.90
230 231 2.806608 ACACCGTTTGTCGTATCAGT 57.193 45.000 0.00 0.00 29.79 3.41
231 232 3.921119 ACACCGTTTGTCGTATCAGTA 57.079 42.857 0.00 0.00 29.79 2.74
232 233 3.568538 ACACCGTTTGTCGTATCAGTAC 58.431 45.455 0.00 0.00 29.79 2.73
233 234 3.004629 ACACCGTTTGTCGTATCAGTACA 59.995 43.478 0.00 0.00 29.79 2.90
234 235 3.606777 CACCGTTTGTCGTATCAGTACAG 59.393 47.826 0.00 0.00 37.94 2.74
235 236 3.254166 ACCGTTTGTCGTATCAGTACAGT 59.746 43.478 0.00 0.00 37.94 3.55
236 237 4.232221 CCGTTTGTCGTATCAGTACAGTT 58.768 43.478 0.00 0.00 37.94 3.16
237 238 4.682860 CCGTTTGTCGTATCAGTACAGTTT 59.317 41.667 0.00 0.00 37.94 2.66
238 239 5.164119 CCGTTTGTCGTATCAGTACAGTTTC 60.164 44.000 0.00 0.00 37.94 2.78
239 240 5.628193 CGTTTGTCGTATCAGTACAGTTTCT 59.372 40.000 0.00 0.00 34.52 2.52
240 241 6.798476 CGTTTGTCGTATCAGTACAGTTTCTA 59.202 38.462 0.00 0.00 34.52 2.10
242 243 8.636843 GTTTGTCGTATCAGTACAGTTTCTAAG 58.363 37.037 0.00 0.00 0.00 2.18
243 244 6.320171 TGTCGTATCAGTACAGTTTCTAAGC 58.680 40.000 0.00 0.00 0.00 3.09
244 245 6.150641 TGTCGTATCAGTACAGTTTCTAAGCT 59.849 38.462 0.00 0.00 0.00 3.74
245 246 7.335171 TGTCGTATCAGTACAGTTTCTAAGCTA 59.665 37.037 0.00 0.00 0.00 3.32
248 249 6.852420 ATCAGTACAGTTTCTAAGCTACCA 57.148 37.500 0.00 0.00 0.00 3.25
249 250 6.268825 TCAGTACAGTTTCTAAGCTACCAG 57.731 41.667 0.00 0.00 0.00 4.00
250 251 5.185249 TCAGTACAGTTTCTAAGCTACCAGG 59.815 44.000 0.00 0.00 0.00 4.45
252 253 5.778750 AGTACAGTTTCTAAGCTACCAGGAA 59.221 40.000 0.00 0.00 0.00 3.36
253 254 5.562298 ACAGTTTCTAAGCTACCAGGAAA 57.438 39.130 0.00 0.00 0.00 3.13
254 255 6.128138 ACAGTTTCTAAGCTACCAGGAAAT 57.872 37.500 0.00 0.00 0.00 2.17
255 256 7.253905 ACAGTTTCTAAGCTACCAGGAAATA 57.746 36.000 0.00 0.00 0.00 1.40
256 257 7.331791 ACAGTTTCTAAGCTACCAGGAAATAG 58.668 38.462 0.00 0.00 0.00 1.73
259 260 5.793030 TCTAAGCTACCAGGAAATAGAGC 57.207 43.478 0.00 0.00 0.00 4.09
260 261 3.847671 AAGCTACCAGGAAATAGAGCC 57.152 47.619 0.00 0.00 0.00 4.70
261 262 2.050918 AGCTACCAGGAAATAGAGCCC 58.949 52.381 0.00 0.00 0.00 5.19
264 265 3.259625 GCTACCAGGAAATAGAGCCCTAG 59.740 52.174 0.00 0.00 0.00 3.02
265 266 2.695585 ACCAGGAAATAGAGCCCTAGG 58.304 52.381 0.06 0.06 0.00 3.02
266 267 2.250273 ACCAGGAAATAGAGCCCTAGGA 59.750 50.000 11.48 0.00 0.00 2.94
267 268 2.903135 CCAGGAAATAGAGCCCTAGGAG 59.097 54.545 11.48 1.06 0.00 3.69
268 269 2.301583 CAGGAAATAGAGCCCTAGGAGC 59.698 54.545 11.48 12.30 0.00 4.70
269 270 1.273886 GGAAATAGAGCCCTAGGAGCG 59.726 57.143 11.48 0.00 34.64 5.03
270 271 2.240279 GAAATAGAGCCCTAGGAGCGA 58.760 52.381 11.48 3.93 34.64 4.93
271 272 2.614134 AATAGAGCCCTAGGAGCGAT 57.386 50.000 11.48 8.62 34.64 4.58
272 273 2.137810 ATAGAGCCCTAGGAGCGATC 57.862 55.000 11.48 1.49 34.64 3.69
273 274 1.068948 TAGAGCCCTAGGAGCGATCT 58.931 55.000 11.48 9.92 34.64 2.75
274 275 0.187361 AGAGCCCTAGGAGCGATCTT 59.813 55.000 11.48 0.00 34.64 2.40
276 277 0.397816 AGCCCTAGGAGCGATCTTGT 60.398 55.000 11.48 0.00 34.64 3.16
279 280 1.482593 CCCTAGGAGCGATCTTGTGTT 59.517 52.381 11.48 0.00 0.00 3.32
280 281 2.093447 CCCTAGGAGCGATCTTGTGTTT 60.093 50.000 11.48 0.00 0.00 2.83
298 299 1.963679 TTTTTCGTGATGGCCCAGC 59.036 52.632 0.00 0.00 0.00 4.85
300 301 1.523154 TTTTCGTGATGGCCCAGCAC 61.523 55.000 21.98 21.98 45.72 4.40
304 305 3.578286 TGATGGCCCAGCACACCA 61.578 61.111 0.00 0.00 37.99 4.17
305 306 2.753043 GATGGCCCAGCACACCAG 60.753 66.667 0.00 0.00 36.78 4.00
310 311 4.729918 CCCAGCACACCAGCTCCC 62.730 72.222 0.00 0.00 44.54 4.30
311 312 4.729918 CCAGCACACCAGCTCCCC 62.730 72.222 0.00 0.00 44.54 4.81
312 313 3.644606 CAGCACACCAGCTCCCCT 61.645 66.667 0.00 0.00 44.54 4.79
313 314 3.644606 AGCACACCAGCTCCCCTG 61.645 66.667 0.00 0.00 42.18 4.45
315 316 4.729918 CACACCAGCTCCCCTGCC 62.730 72.222 0.00 0.00 40.36 4.85
319 320 2.773918 CCAGCTCCCCTGCCCATA 60.774 66.667 0.00 0.00 40.36 2.74
320 321 2.512896 CAGCTCCCCTGCCCATAC 59.487 66.667 0.00 0.00 34.21 2.39
324 325 0.753111 GCTCCCCTGCCCATACAAAG 60.753 60.000 0.00 0.00 0.00 2.77
325 326 0.625849 CTCCCCTGCCCATACAAAGT 59.374 55.000 0.00 0.00 0.00 2.66
326 327 1.843851 CTCCCCTGCCCATACAAAGTA 59.156 52.381 0.00 0.00 0.00 2.24
330 331 2.238646 CCCTGCCCATACAAAGTACTCA 59.761 50.000 0.00 0.00 0.00 3.41
333 334 3.681593 TGCCCATACAAAGTACTCAACC 58.318 45.455 0.00 0.00 0.00 3.77
334 335 2.676342 GCCCATACAAAGTACTCAACCG 59.324 50.000 0.00 0.00 0.00 4.44
336 337 3.930848 CCCATACAAAGTACTCAACCGAC 59.069 47.826 0.00 0.00 0.00 4.79
337 338 4.322499 CCCATACAAAGTACTCAACCGACT 60.322 45.833 0.00 0.00 0.00 4.18
338 339 5.235516 CCATACAAAGTACTCAACCGACTT 58.764 41.667 0.00 0.00 34.92 3.01
339 340 5.347907 CCATACAAAGTACTCAACCGACTTC 59.652 44.000 0.00 0.00 32.27 3.01
340 341 3.725490 ACAAAGTACTCAACCGACTTCC 58.275 45.455 0.00 0.00 32.27 3.46
341 342 3.064931 CAAAGTACTCAACCGACTTCCC 58.935 50.000 0.00 0.00 32.27 3.97
342 343 2.305858 AGTACTCAACCGACTTCCCT 57.694 50.000 0.00 0.00 0.00 4.20
343 344 3.446442 AGTACTCAACCGACTTCCCTA 57.554 47.619 0.00 0.00 0.00 3.53
345 346 4.154942 AGTACTCAACCGACTTCCCTAAA 58.845 43.478 0.00 0.00 0.00 1.85
347 348 4.426736 ACTCAACCGACTTCCCTAAAAA 57.573 40.909 0.00 0.00 0.00 1.94
366 367 3.907894 AAAAATGTACGCAACCGACAT 57.092 38.095 0.00 0.00 37.05 3.06
367 368 3.907894 AAAATGTACGCAACCGACATT 57.092 38.095 0.00 0.00 41.91 2.71
368 369 5.359716 AAAAATGTACGCAACCGACATTA 57.640 34.783 11.33 0.00 40.66 1.90
370 371 4.593597 AATGTACGCAACCGACATTAAG 57.406 40.909 10.08 0.00 40.23 1.85
371 372 3.300852 TGTACGCAACCGACATTAAGA 57.699 42.857 0.00 0.00 38.29 2.10
372 373 3.247442 TGTACGCAACCGACATTAAGAG 58.753 45.455 0.00 0.00 38.29 2.85
373 374 2.450609 ACGCAACCGACATTAAGAGT 57.549 45.000 0.00 0.00 38.29 3.24
374 375 2.334838 ACGCAACCGACATTAAGAGTC 58.665 47.619 1.73 1.73 38.29 3.36
375 376 2.029290 ACGCAACCGACATTAAGAGTCT 60.029 45.455 8.62 0.00 38.29 3.24
376 377 2.345641 CGCAACCGACATTAAGAGTCTG 59.654 50.000 0.00 5.40 36.29 3.51
377 378 2.673368 GCAACCGACATTAAGAGTCTGG 59.327 50.000 0.00 14.32 36.46 3.86
378 379 3.864921 GCAACCGACATTAAGAGTCTGGT 60.865 47.826 15.13 15.13 41.31 4.00
379 380 3.870633 ACCGACATTAAGAGTCTGGTC 57.129 47.619 15.13 0.00 37.94 4.02
383 384 4.389077 CCGACATTAAGAGTCTGGTCAAAC 59.611 45.833 0.00 0.00 33.89 2.93
384 385 5.230942 CGACATTAAGAGTCTGGTCAAACT 58.769 41.667 0.00 0.00 33.89 2.66
388 389 5.470047 TTAAGAGTCTGGTCAAACTCCTC 57.530 43.478 0.00 0.00 42.34 3.71
389 390 2.964209 AGAGTCTGGTCAAACTCCTCA 58.036 47.619 1.24 0.00 42.34 3.86
391 392 1.694696 AGTCTGGTCAAACTCCTCACC 59.305 52.381 0.00 0.00 0.00 4.02
392 393 1.056660 TCTGGTCAAACTCCTCACCC 58.943 55.000 0.00 0.00 0.00 4.61
394 395 1.003718 GGTCAAACTCCTCACCCCG 60.004 63.158 0.00 0.00 0.00 5.73
395 396 1.671379 GTCAAACTCCTCACCCCGC 60.671 63.158 0.00 0.00 0.00 6.13
396 397 2.144078 TCAAACTCCTCACCCCGCA 61.144 57.895 0.00 0.00 0.00 5.69
397 398 1.002134 CAAACTCCTCACCCCGCAT 60.002 57.895 0.00 0.00 0.00 4.73
398 399 1.002134 AAACTCCTCACCCCGCATG 60.002 57.895 0.00 0.00 0.00 4.06
399 400 1.779061 AAACTCCTCACCCCGCATGT 61.779 55.000 0.00 0.00 0.00 3.21
400 401 2.185310 AACTCCTCACCCCGCATGTC 62.185 60.000 0.00 0.00 0.00 3.06
401 402 2.284625 TCCTCACCCCGCATGTCT 60.285 61.111 0.00 0.00 0.00 3.41
402 403 1.903877 CTCCTCACCCCGCATGTCTT 61.904 60.000 0.00 0.00 0.00 3.01
403 404 1.002134 CCTCACCCCGCATGTCTTT 60.002 57.895 0.00 0.00 0.00 2.52
404 405 1.026718 CCTCACCCCGCATGTCTTTC 61.027 60.000 0.00 0.00 0.00 2.62
407 408 1.675641 ACCCCGCATGTCTTTCTGC 60.676 57.895 0.00 0.00 35.02 4.26
408 409 1.377725 CCCCGCATGTCTTTCTGCT 60.378 57.895 0.00 0.00 36.23 4.24
409 410 0.962356 CCCCGCATGTCTTTCTGCTT 60.962 55.000 0.00 0.00 36.23 3.91
410 411 0.883833 CCCGCATGTCTTTCTGCTTT 59.116 50.000 0.00 0.00 36.23 3.51
411 412 1.401931 CCCGCATGTCTTTCTGCTTTG 60.402 52.381 0.00 0.00 36.23 2.77
412 413 1.267806 CCGCATGTCTTTCTGCTTTGT 59.732 47.619 0.00 0.00 36.23 2.83
413 414 2.313234 CGCATGTCTTTCTGCTTTGTG 58.687 47.619 0.00 0.00 36.23 3.33
414 415 2.287188 CGCATGTCTTTCTGCTTTGTGT 60.287 45.455 0.00 0.00 36.23 3.72
415 416 3.709987 GCATGTCTTTCTGCTTTGTGTT 58.290 40.909 0.00 0.00 35.49 3.32
416 417 4.114794 GCATGTCTTTCTGCTTTGTGTTT 58.885 39.130 0.00 0.00 35.49 2.83
418 419 5.342433 CATGTCTTTCTGCTTTGTGTTTCA 58.658 37.500 0.00 0.00 0.00 2.69
419 420 5.384063 TGTCTTTCTGCTTTGTGTTTCAA 57.616 34.783 0.00 0.00 0.00 2.69
420 421 5.401550 TGTCTTTCTGCTTTGTGTTTCAAG 58.598 37.500 0.00 0.00 37.35 3.02
421 422 5.182950 TGTCTTTCTGCTTTGTGTTTCAAGA 59.817 36.000 0.00 0.00 37.35 3.02
423 424 5.647658 TCTTTCTGCTTTGTGTTTCAAGAGA 59.352 36.000 0.00 0.00 37.35 3.10
424 425 5.490139 TTCTGCTTTGTGTTTCAAGAGAG 57.510 39.130 0.00 0.00 37.35 3.20
425 426 4.769688 TCTGCTTTGTGTTTCAAGAGAGA 58.230 39.130 0.00 0.00 37.35 3.10
427 428 4.769688 TGCTTTGTGTTTCAAGAGAGAGA 58.230 39.130 0.00 0.00 37.35 3.10
428 429 4.813161 TGCTTTGTGTTTCAAGAGAGAGAG 59.187 41.667 0.00 0.00 37.35 3.20
429 430 4.213059 GCTTTGTGTTTCAAGAGAGAGAGG 59.787 45.833 0.00 0.00 37.35 3.69
430 431 5.605534 CTTTGTGTTTCAAGAGAGAGAGGA 58.394 41.667 0.00 0.00 37.35 3.71
431 432 4.862902 TGTGTTTCAAGAGAGAGAGGAG 57.137 45.455 0.00 0.00 0.00 3.69
432 433 3.576118 TGTGTTTCAAGAGAGAGAGGAGG 59.424 47.826 0.00 0.00 0.00 4.30
433 434 3.056179 GTGTTTCAAGAGAGAGAGGAGGG 60.056 52.174 0.00 0.00 0.00 4.30
437 438 1.576368 AAGAGAGAGAGGAGGGGCGA 61.576 60.000 0.00 0.00 0.00 5.54
438 439 1.152830 GAGAGAGAGGAGGGGCGAT 59.847 63.158 0.00 0.00 0.00 4.58
439 440 0.469144 GAGAGAGAGGAGGGGCGATT 60.469 60.000 0.00 0.00 0.00 3.34
441 442 0.105778 GAGAGAGGAGGGGCGATTTG 59.894 60.000 0.00 0.00 0.00 2.32
442 443 1.147153 GAGAGGAGGGGCGATTTGG 59.853 63.158 0.00 0.00 0.00 3.28
443 444 2.193248 GAGGAGGGGCGATTTGGG 59.807 66.667 0.00 0.00 0.00 4.12
444 445 3.420482 AGGAGGGGCGATTTGGGG 61.420 66.667 0.00 0.00 0.00 4.96
445 446 4.522975 GGAGGGGCGATTTGGGGG 62.523 72.222 0.00 0.00 0.00 5.40
446 447 3.416880 GAGGGGCGATTTGGGGGA 61.417 66.667 0.00 0.00 0.00 4.81
447 448 3.716204 GAGGGGCGATTTGGGGGAC 62.716 68.421 0.00 0.00 0.00 4.46
448 449 4.055227 GGGGCGATTTGGGGGACA 62.055 66.667 0.00 0.00 0.00 4.02
449 450 2.036572 GGGCGATTTGGGGGACAA 59.963 61.111 0.00 0.00 37.28 3.18
450 451 2.052104 GGGCGATTTGGGGGACAAG 61.052 63.158 0.00 0.00 40.82 3.16
452 453 1.304134 GCGATTTGGGGGACAAGGT 60.304 57.895 0.00 0.00 40.82 3.50
453 454 1.313091 GCGATTTGGGGGACAAGGTC 61.313 60.000 0.00 0.00 40.82 3.85
454 455 1.024579 CGATTTGGGGGACAAGGTCG 61.025 60.000 0.00 0.00 40.82 4.79
455 456 0.326927 GATTTGGGGGACAAGGTCGA 59.673 55.000 0.00 0.00 40.82 4.20
456 457 0.037734 ATTTGGGGGACAAGGTCGAC 59.962 55.000 7.13 7.13 40.82 4.20
457 458 2.059345 TTTGGGGGACAAGGTCGACC 62.059 60.000 27.67 27.67 40.82 4.79
459 460 2.346365 GGGGACAAGGTCGACCAC 59.654 66.667 35.00 21.56 38.89 4.16
468 469 3.041940 GTCGACCACCGGTGCTTG 61.042 66.667 29.75 19.65 35.25 4.01
469 470 4.980805 TCGACCACCGGTGCTTGC 62.981 66.667 29.75 15.45 35.25 4.01
471 472 2.904866 GACCACCGGTGCTTGCAA 60.905 61.111 29.75 0.00 35.25 4.08
472 473 3.194272 GACCACCGGTGCTTGCAAC 62.194 63.158 29.75 10.07 35.25 4.17
473 474 2.906897 CCACCGGTGCTTGCAACT 60.907 61.111 29.75 0.00 0.00 3.16
474 475 2.489275 CCACCGGTGCTTGCAACTT 61.489 57.895 29.75 0.00 0.00 2.66
475 476 1.299316 CACCGGTGCTTGCAACTTG 60.299 57.895 24.02 2.32 0.00 3.16
476 477 2.336088 CCGGTGCTTGCAACTTGG 59.664 61.111 9.06 0.00 0.00 3.61
477 478 2.336088 CGGTGCTTGCAACTTGGG 59.664 61.111 9.06 0.00 0.00 4.12
478 479 2.489275 CGGTGCTTGCAACTTGGGT 61.489 57.895 9.06 0.00 0.00 4.51
479 480 1.067916 GGTGCTTGCAACTTGGGTG 59.932 57.895 3.07 0.00 0.00 4.61
480 481 1.391157 GGTGCTTGCAACTTGGGTGA 61.391 55.000 3.07 0.00 0.00 4.02
481 482 0.031178 GTGCTTGCAACTTGGGTGAG 59.969 55.000 0.00 0.00 0.00 3.51
483 484 1.809567 GCTTGCAACTTGGGTGAGGG 61.810 60.000 0.00 0.00 0.00 4.30
484 485 0.468029 CTTGCAACTTGGGTGAGGGT 60.468 55.000 0.00 0.00 0.00 4.34
485 486 0.032615 TTGCAACTTGGGTGAGGGTT 60.033 50.000 0.00 0.00 0.00 4.11
486 487 0.847373 TGCAACTTGGGTGAGGGTTA 59.153 50.000 0.00 0.00 0.00 2.85
487 488 1.215673 TGCAACTTGGGTGAGGGTTAA 59.784 47.619 0.00 0.00 0.00 2.01
488 489 1.886542 GCAACTTGGGTGAGGGTTAAG 59.113 52.381 0.00 0.00 0.00 1.85
489 490 2.751816 GCAACTTGGGTGAGGGTTAAGT 60.752 50.000 0.00 0.00 33.36 2.24
490 491 3.562182 CAACTTGGGTGAGGGTTAAGTT 58.438 45.455 0.00 0.00 40.93 2.66
491 492 3.223674 ACTTGGGTGAGGGTTAAGTTG 57.776 47.619 0.00 0.00 0.00 3.16
492 493 2.158519 ACTTGGGTGAGGGTTAAGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
493 494 0.774908 TGGGTGAGGGTTAAGTTGGG 59.225 55.000 0.00 0.00 0.00 4.12
494 495 0.611062 GGGTGAGGGTTAAGTTGGGC 60.611 60.000 0.00 0.00 0.00 5.36
496 497 0.035739 GTGAGGGTTAAGTTGGGCGA 59.964 55.000 0.00 0.00 0.00 5.54
497 498 0.323629 TGAGGGTTAAGTTGGGCGAG 59.676 55.000 0.00 0.00 0.00 5.03
498 499 0.392595 GAGGGTTAAGTTGGGCGAGG 60.393 60.000 0.00 0.00 0.00 4.63
499 500 1.131928 AGGGTTAAGTTGGGCGAGGT 61.132 55.000 0.00 0.00 0.00 3.85
500 501 0.958876 GGGTTAAGTTGGGCGAGGTG 60.959 60.000 0.00 0.00 0.00 4.00
501 502 0.958876 GGTTAAGTTGGGCGAGGTGG 60.959 60.000 0.00 0.00 0.00 4.61
504 505 0.250553 TAAGTTGGGCGAGGTGGTTG 60.251 55.000 0.00 0.00 0.00 3.77
505 506 3.670377 GTTGGGCGAGGTGGTTGC 61.670 66.667 0.00 0.00 34.28 4.17
507 508 4.641645 TGGGCGAGGTGGTTGCTG 62.642 66.667 0.00 0.00 35.59 4.41
510 511 2.743928 GCGAGGTGGTTGCTGGAG 60.744 66.667 0.00 0.00 31.94 3.86
511 512 3.059982 CGAGGTGGTTGCTGGAGA 58.940 61.111 0.00 0.00 0.00 3.71
512 513 1.374758 CGAGGTGGTTGCTGGAGAC 60.375 63.158 0.00 0.00 0.00 3.36
513 514 1.754745 GAGGTGGTTGCTGGAGACA 59.245 57.895 0.00 0.00 39.59 3.41
516 517 0.883833 GGTGGTTGCTGGAGACAATG 59.116 55.000 0.00 0.00 42.06 2.82
517 518 1.545428 GGTGGTTGCTGGAGACAATGA 60.545 52.381 0.00 0.00 42.06 2.57
518 519 2.440409 GTGGTTGCTGGAGACAATGAT 58.560 47.619 0.00 0.00 42.06 2.45
520 521 4.009675 GTGGTTGCTGGAGACAATGATAA 58.990 43.478 0.00 0.00 42.06 1.75
521 522 4.458989 GTGGTTGCTGGAGACAATGATAAA 59.541 41.667 0.00 0.00 42.06 1.40
522 523 4.701651 TGGTTGCTGGAGACAATGATAAAG 59.298 41.667 0.00 0.00 42.06 1.85
523 524 4.096984 GGTTGCTGGAGACAATGATAAAGG 59.903 45.833 0.00 0.00 42.06 3.11
524 525 4.842531 TGCTGGAGACAATGATAAAGGA 57.157 40.909 0.00 0.00 42.06 3.36
525 526 5.178096 TGCTGGAGACAATGATAAAGGAA 57.822 39.130 0.00 0.00 42.06 3.36
526 527 5.569355 TGCTGGAGACAATGATAAAGGAAA 58.431 37.500 0.00 0.00 42.06 3.13
527 528 6.189859 TGCTGGAGACAATGATAAAGGAAAT 58.810 36.000 0.00 0.00 42.06 2.17
528 529 7.345691 TGCTGGAGACAATGATAAAGGAAATA 58.654 34.615 0.00 0.00 42.06 1.40
529 530 8.000709 TGCTGGAGACAATGATAAAGGAAATAT 58.999 33.333 0.00 0.00 42.06 1.28
530 531 8.295288 GCTGGAGACAATGATAAAGGAAATATG 58.705 37.037 0.00 0.00 42.06 1.78
531 532 8.169977 TGGAGACAATGATAAAGGAAATATGC 57.830 34.615 0.00 0.00 37.44 3.14
533 534 7.449704 GGAGACAATGATAAAGGAAATATGCCT 59.550 37.037 0.00 0.00 37.35 4.75
534 535 9.507329 GAGACAATGATAAAGGAAATATGCCTA 57.493 33.333 0.00 0.00 33.76 3.93
535 536 9.512588 AGACAATGATAAAGGAAATATGCCTAG 57.487 33.333 0.00 0.00 33.76 3.02
536 537 9.507329 GACAATGATAAAGGAAATATGCCTAGA 57.493 33.333 0.00 0.00 33.76 2.43
537 538 9.512588 ACAATGATAAAGGAAATATGCCTAGAG 57.487 33.333 0.00 0.00 33.76 2.43
540 541 8.262601 TGATAAAGGAAATATGCCTAGAGACA 57.737 34.615 0.00 0.00 33.76 3.41
541 542 8.713971 TGATAAAGGAAATATGCCTAGAGACAA 58.286 33.333 0.00 0.00 33.76 3.18
542 543 9.732130 GATAAAGGAAATATGCCTAGAGACAAT 57.268 33.333 0.00 0.00 33.76 2.71
623 624 9.672086 CAAGAATTGTATTAACCGAAAACTTGA 57.328 29.630 0.00 0.00 42.34 3.02
630 631 9.221933 TGTATTAACCGAAAACTTGATACATGT 57.778 29.630 2.69 2.69 28.92 3.21
631 632 9.485591 GTATTAACCGAAAACTTGATACATGTG 57.514 33.333 9.11 0.00 0.00 3.21
633 634 5.356882 ACCGAAAACTTGATACATGTGTG 57.643 39.130 9.11 0.00 0.00 3.82
634 635 5.060506 ACCGAAAACTTGATACATGTGTGA 58.939 37.500 9.11 0.00 0.00 3.58
636 637 6.206634 ACCGAAAACTTGATACATGTGTGAAT 59.793 34.615 9.11 0.00 0.00 2.57
637 638 7.389330 ACCGAAAACTTGATACATGTGTGAATA 59.611 33.333 9.11 0.00 0.00 1.75
644 645 9.534565 ACTTGATACATGTGTGAATACATAGAC 57.465 33.333 9.11 0.00 39.17 2.59
645 646 9.533253 CTTGATACATGTGTGAATACATAGACA 57.467 33.333 9.11 0.00 39.17 3.41
646 647 9.883142 TTGATACATGTGTGAATACATAGACAA 57.117 29.630 9.11 0.00 39.17 3.18
652 653 9.935682 CATGTGTGAATACATAGACAAAATACC 57.064 33.333 0.00 0.00 39.17 2.73
653 654 9.679661 ATGTGTGAATACATAGACAAAATACCA 57.320 29.630 0.00 0.00 39.40 3.25
654 655 9.679661 TGTGTGAATACATAGACAAAATACCAT 57.320 29.630 0.00 0.00 39.39 3.55
655 656 9.935682 GTGTGAATACATAGACAAAATACCATG 57.064 33.333 0.00 0.00 39.39 3.66
659 660 8.691661 AATACATAGACAAAATACCATGTCCC 57.308 34.615 2.52 0.00 45.55 4.46
660 661 6.327386 ACATAGACAAAATACCATGTCCCT 57.673 37.500 2.52 0.00 45.55 4.20
661 662 7.446106 ACATAGACAAAATACCATGTCCCTA 57.554 36.000 2.52 0.00 45.55 3.53
662 663 7.509546 ACATAGACAAAATACCATGTCCCTAG 58.490 38.462 2.52 0.00 45.55 3.02
664 665 5.990668 AGACAAAATACCATGTCCCTAGTC 58.009 41.667 2.52 0.00 45.55 2.59
665 666 4.766375 ACAAAATACCATGTCCCTAGTCG 58.234 43.478 0.00 0.00 0.00 4.18
666 667 4.127171 CAAAATACCATGTCCCTAGTCGG 58.873 47.826 0.00 0.00 0.00 4.79
667 668 3.323774 AATACCATGTCCCTAGTCGGA 57.676 47.619 0.00 0.00 33.16 4.55
678 3876 2.168521 CCCTAGTCGGAATTCAAGCTGA 59.831 50.000 7.93 0.00 33.16 4.26
712 3910 5.520288 AGTTGTATCGGATTTCAGAATCACG 59.480 40.000 0.00 3.54 42.82 4.35
713 3911 5.257082 TGTATCGGATTTCAGAATCACGA 57.743 39.130 0.00 11.92 42.82 4.35
717 3922 4.816392 TCGGATTTCAGAATCACGAGAAA 58.184 39.130 0.00 0.00 42.82 2.52
719 3924 4.201724 CGGATTTCAGAATCACGAGAAACC 60.202 45.833 0.00 0.00 42.82 3.27
735 3940 1.589803 AACCGGCACTGTTCAAGTAC 58.410 50.000 0.00 0.00 36.83 2.73
795 4001 0.255033 AGATTTTCTGGCCCCGTACC 59.745 55.000 0.00 0.00 0.00 3.34
894 4101 3.181480 GCACCACCACAACTTGTGTAATT 60.181 43.478 18.53 0.50 46.45 1.40
899 4106 5.689961 CCACCACAACTTGTGTAATTAAAGC 59.310 40.000 18.53 0.00 46.45 3.51
923 4134 4.468689 CCGTCCTTCCTTCCCCGC 62.469 72.222 0.00 0.00 0.00 6.13
924 4135 4.814294 CGTCCTTCCTTCCCCGCG 62.814 72.222 0.00 0.00 0.00 6.46
956 4167 3.160478 GCCCCCAACCAAACCTCCT 62.160 63.158 0.00 0.00 0.00 3.69
982 4194 1.113788 CAGAGCAAGAGAGAGGGAGG 58.886 60.000 0.00 0.00 0.00 4.30
993 4205 2.065799 GAGAGGGAGGGAGAGAGAGAT 58.934 57.143 0.00 0.00 0.00 2.75
994 4206 2.040412 GAGAGGGAGGGAGAGAGAGATC 59.960 59.091 0.00 0.00 0.00 2.75
995 4207 2.065799 GAGGGAGGGAGAGAGAGATCT 58.934 57.143 0.00 0.00 0.00 2.75
1116 4349 0.472734 ATCCATCCCCTTCCTCTCCG 60.473 60.000 0.00 0.00 0.00 4.63
1118 4351 2.840102 ATCCCCTTCCTCTCCGCG 60.840 66.667 0.00 0.00 0.00 6.46
1119 4352 3.375443 ATCCCCTTCCTCTCCGCGA 62.375 63.158 8.23 0.00 0.00 5.87
1120 4353 3.532155 CCCCTTCCTCTCCGCGAG 61.532 72.222 8.23 3.02 39.57 5.03
1152 4416 6.625532 TGCTGGATCCTGATATATTAGCAA 57.374 37.500 21.91 3.51 35.91 3.91
1289 4558 4.862092 CTCGTCGCGCATGGCTCT 62.862 66.667 8.75 0.00 40.44 4.09
1327 4596 2.183555 GGACTACGACGCCCTTGG 59.816 66.667 0.00 0.00 0.00 3.61
1344 4613 3.555956 CCTTGGTTGATATCGTGTAGCAC 59.444 47.826 0.00 0.00 0.00 4.40
1368 4637 2.776072 CCGTGCGAATCAACGTCC 59.224 61.111 0.00 0.00 35.59 4.79
1562 4855 0.813610 TCGGTGAGCAGGTTTGTGTG 60.814 55.000 0.00 0.00 0.00 3.82
1563 4856 0.813610 CGGTGAGCAGGTTTGTGTGA 60.814 55.000 0.00 0.00 0.00 3.58
1564 4857 0.663153 GGTGAGCAGGTTTGTGTGAC 59.337 55.000 0.00 0.00 0.00 3.67
1576 4872 4.433186 TTTGTGTGACAAACAGGAGTTG 57.567 40.909 0.00 0.00 42.55 3.16
1594 4890 2.743718 CGATCCCAGGATTCCCCG 59.256 66.667 0.00 0.00 40.87 5.73
1632 4931 4.379186 GCGATATTTCTCCGATCGGACTTA 60.379 45.833 32.59 19.46 42.10 2.24
1636 4935 7.201359 CGATATTTCTCCGATCGGACTTAATTG 60.201 40.741 32.59 20.41 39.76 2.32
1658 4957 5.184711 TGTGTGTGCTATATGCTTCATTGA 58.815 37.500 0.00 0.00 43.37 2.57
1662 4961 5.471116 GTGTGCTATATGCTTCATTGATGGA 59.529 40.000 2.16 0.00 43.37 3.41
1663 4962 5.704053 TGTGCTATATGCTTCATTGATGGAG 59.296 40.000 2.16 0.00 43.37 3.86
1677 5572 0.104487 ATGGAGCAGAGATGCTGTCG 59.896 55.000 7.60 0.00 46.36 4.35
1679 5574 0.527385 GGAGCAGAGATGCTGTCGAC 60.527 60.000 9.11 9.11 46.36 4.20
1680 5575 0.455410 GAGCAGAGATGCTGTCGACT 59.545 55.000 17.92 0.00 46.36 4.18
1681 5576 0.455410 AGCAGAGATGCTGTCGACTC 59.545 55.000 17.92 9.16 46.62 3.36
1682 5577 0.455410 GCAGAGATGCTGTCGACTCT 59.545 55.000 17.92 10.98 46.62 3.24
1683 5578 1.533756 GCAGAGATGCTGTCGACTCTC 60.534 57.143 19.58 19.58 46.62 3.20
1684 5579 2.016318 CAGAGATGCTGTCGACTCTCT 58.984 52.381 22.60 22.60 43.98 3.10
1685 5580 2.032054 CAGAGATGCTGTCGACTCTCTC 59.968 54.545 24.47 22.07 41.87 3.20
1888 8018 1.153208 GGAGCAGCAGGTGGAGATG 60.153 63.158 0.86 0.00 0.00 2.90
1889 8019 1.153208 GAGCAGCAGGTGGAGATGG 60.153 63.158 0.86 0.00 0.00 3.51
1890 8020 2.124403 GCAGCAGGTGGAGATGGG 60.124 66.667 0.86 0.00 0.00 4.00
1891 8021 2.673200 GCAGCAGGTGGAGATGGGA 61.673 63.158 0.86 0.00 0.00 4.37
1892 8022 1.222936 CAGCAGGTGGAGATGGGAC 59.777 63.158 0.00 0.00 0.00 4.46
1953 8120 2.887783 TGCTTTACATTTTGAGGCGGAA 59.112 40.909 0.00 0.00 0.00 4.30
2031 8232 2.673368 CCACGACATCTAAACAGCCTTC 59.327 50.000 0.00 0.00 0.00 3.46
2045 8290 4.860022 ACAGCCTTCTATGCTACCAAATT 58.140 39.130 0.00 0.00 36.81 1.82
2065 8310 7.654116 CCAAATTAATCCGTGTAAACTGGTTTT 59.346 33.333 4.01 0.00 34.23 2.43
2072 8317 3.312146 CGTGTAAACTGGTTTTACCCGTT 59.688 43.478 4.01 0.52 45.70 4.44
2090 8335 4.122515 GACGCACGCTCGTTGCTC 62.123 66.667 4.08 7.40 43.42 4.26
2111 8356 5.743117 CTCTCTGATTTGACTCATTCCCTT 58.257 41.667 0.00 0.00 0.00 3.95
2187 8432 1.891919 GTGGTGCTCGAACTTGCCA 60.892 57.895 0.00 0.00 0.00 4.92
2188 8433 1.891919 TGGTGCTCGAACTTGCCAC 60.892 57.895 0.00 0.00 0.00 5.01
2189 8434 1.598130 GGTGCTCGAACTTGCCACT 60.598 57.895 0.00 0.00 0.00 4.00
2190 8435 1.571460 GTGCTCGAACTTGCCACTG 59.429 57.895 0.00 0.00 0.00 3.66
2191 8436 1.597854 TGCTCGAACTTGCCACTGG 60.598 57.895 0.00 0.00 0.00 4.00
2192 8437 2.328099 GCTCGAACTTGCCACTGGG 61.328 63.158 0.00 0.00 37.18 4.45
2193 8438 1.672356 CTCGAACTTGCCACTGGGG 60.672 63.158 0.00 0.00 40.85 4.96
2194 8439 2.113139 CGAACTTGCCACTGGGGT 59.887 61.111 0.00 0.00 39.65 4.95
2195 8440 1.966451 CGAACTTGCCACTGGGGTC 60.966 63.158 0.00 0.00 39.65 4.46
2212 8457 3.499021 GGGGTCCACTTTAGTGCCTAAAA 60.499 47.826 4.34 0.00 44.34 1.52
2255 8500 9.564470 GAACTGGTTCTAAAATTTGACGCGAGT 62.564 40.741 15.93 0.00 41.19 4.18
2267 8512 0.942410 ACGCGAGTGTGCAAATACGT 60.942 50.000 15.93 0.00 46.97 3.57
2302 8547 3.119245 TCATAGACGTAAAGGGTGCTGAC 60.119 47.826 0.00 0.00 0.00 3.51
2303 8548 0.320697 AGACGTAAAGGGTGCTGACC 59.679 55.000 0.00 0.00 42.27 4.02
2306 8551 0.244450 CGTAAAGGGTGCTGACCGTA 59.756 55.000 0.00 0.00 44.23 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.002624 CCTACATGGTTGGCGGTGT 60.003 57.895 0.00 0.00 0.00 4.16
33 34 3.251043 GTAGCGTCTCTGCTGCGC 61.251 66.667 0.00 0.00 46.70 6.09
34 35 2.580867 GGTAGCGTCTCTGCTGCG 60.581 66.667 0.00 0.00 46.94 5.18
35 36 2.202810 GGGTAGCGTCTCTGCTGC 60.203 66.667 0.00 0.00 46.70 5.25
40 41 2.408241 GCAGTCGGGTAGCGTCTCT 61.408 63.158 0.00 0.00 0.00 3.10
41 42 2.102553 GCAGTCGGGTAGCGTCTC 59.897 66.667 0.00 0.00 0.00 3.36
42 43 3.450115 GGCAGTCGGGTAGCGTCT 61.450 66.667 0.00 0.00 0.00 4.18
43 44 4.849329 CGGCAGTCGGGTAGCGTC 62.849 72.222 0.00 0.00 34.75 5.19
63 64 4.087892 CTCACGTGGGGAGGCTGG 62.088 72.222 17.00 0.00 0.00 4.85
64 65 2.997315 TCTCACGTGGGGAGGCTG 60.997 66.667 17.03 0.00 33.18 4.85
65 66 2.997897 GTCTCACGTGGGGAGGCT 60.998 66.667 17.03 0.00 34.23 4.58
67 68 4.436998 GCGTCTCACGTGGGGAGG 62.437 72.222 17.03 18.80 44.73 4.30
87 88 0.894141 CAGATCCTATGAGGCGGAGG 59.106 60.000 0.00 0.00 34.61 4.30
88 89 0.246086 GCAGATCCTATGAGGCGGAG 59.754 60.000 0.00 0.00 34.61 4.63
89 90 1.188219 GGCAGATCCTATGAGGCGGA 61.188 60.000 0.00 0.00 34.61 5.54
90 91 1.294780 GGCAGATCCTATGAGGCGG 59.705 63.158 0.00 0.00 34.61 6.13
91 92 1.080230 CGGCAGATCCTATGAGGCG 60.080 63.158 0.00 0.00 41.63 5.52
92 93 1.375268 GCGGCAGATCCTATGAGGC 60.375 63.158 0.00 0.00 34.61 4.70
93 94 0.394192 TTGCGGCAGATCCTATGAGG 59.606 55.000 1.67 0.00 36.46 3.86
94 95 1.506493 GTTGCGGCAGATCCTATGAG 58.494 55.000 1.67 0.00 0.00 2.90
95 96 0.249447 CGTTGCGGCAGATCCTATGA 60.249 55.000 1.67 0.00 0.00 2.15
96 97 0.249447 TCGTTGCGGCAGATCCTATG 60.249 55.000 1.67 0.00 0.00 2.23
97 98 0.249489 GTCGTTGCGGCAGATCCTAT 60.249 55.000 1.67 0.00 0.00 2.57
98 99 1.141019 GTCGTTGCGGCAGATCCTA 59.859 57.895 1.67 0.00 0.00 2.94
100 101 3.195698 GGTCGTTGCGGCAGATCC 61.196 66.667 1.67 1.46 30.88 3.36
101 102 2.434185 TGGTCGTTGCGGCAGATC 60.434 61.111 1.67 0.00 30.88 2.75
102 103 2.742372 GTGGTCGTTGCGGCAGAT 60.742 61.111 1.67 0.00 30.88 2.90
103 104 4.980805 GGTGGTCGTTGCGGCAGA 62.981 66.667 1.67 0.00 30.88 4.26
110 111 3.353836 CAAGGCGGGTGGTCGTTG 61.354 66.667 0.00 0.00 0.00 4.10
111 112 4.636435 CCAAGGCGGGTGGTCGTT 62.636 66.667 0.00 0.00 0.00 3.85
113 114 4.096003 ATCCAAGGCGGGTGGTCG 62.096 66.667 5.08 0.00 37.43 4.79
114 115 2.124695 GATCCAAGGCGGGTGGTC 60.125 66.667 5.08 0.32 37.43 4.02
115 116 2.610859 AGATCCAAGGCGGGTGGT 60.611 61.111 5.08 0.00 37.43 4.16
118 119 4.473520 CGCAGATCCAAGGCGGGT 62.474 66.667 9.87 0.00 46.46 5.28
122 123 3.512516 GCACCGCAGATCCAAGGC 61.513 66.667 0.00 0.00 0.00 4.35
123 124 2.046023 TGCACCGCAGATCCAAGG 60.046 61.111 0.00 0.00 33.32 3.61
151 152 1.674322 ATTTGAAGGGTCGCGGTGG 60.674 57.895 6.13 0.00 0.00 4.61
152 153 1.501741 CATTTGAAGGGTCGCGGTG 59.498 57.895 6.13 0.00 0.00 4.94
153 154 2.332654 GCATTTGAAGGGTCGCGGT 61.333 57.895 6.13 0.00 0.00 5.68
156 157 0.169009 GTGAGCATTTGAAGGGTCGC 59.831 55.000 5.57 5.57 39.79 5.19
157 158 1.813513 AGTGAGCATTTGAAGGGTCG 58.186 50.000 3.61 0.00 39.79 4.79
158 159 2.489722 GGAAGTGAGCATTTGAAGGGTC 59.510 50.000 1.09 1.09 37.68 4.46
159 160 2.158475 TGGAAGTGAGCATTTGAAGGGT 60.158 45.455 0.00 0.00 0.00 4.34
160 161 2.229784 GTGGAAGTGAGCATTTGAAGGG 59.770 50.000 0.00 0.00 0.00 3.95
161 162 2.095567 CGTGGAAGTGAGCATTTGAAGG 60.096 50.000 0.00 0.00 0.00 3.46
162 163 2.095567 CCGTGGAAGTGAGCATTTGAAG 60.096 50.000 0.00 0.00 0.00 3.02
163 164 1.879380 CCGTGGAAGTGAGCATTTGAA 59.121 47.619 0.00 0.00 0.00 2.69
164 165 1.071542 TCCGTGGAAGTGAGCATTTGA 59.928 47.619 0.00 0.00 0.00 2.69
167 168 0.670546 CGTCCGTGGAAGTGAGCATT 60.671 55.000 0.00 0.00 0.00 3.56
168 169 1.079819 CGTCCGTGGAAGTGAGCAT 60.080 57.895 0.00 0.00 0.00 3.79
169 170 2.023414 AACGTCCGTGGAAGTGAGCA 62.023 55.000 8.25 0.00 36.97 4.26
197 198 1.565156 CGGTGTATGCTGCGTTGTGT 61.565 55.000 0.00 0.00 0.00 3.72
204 205 0.179225 CGACAAACGGTGTATGCTGC 60.179 55.000 0.00 0.00 41.96 5.25
205 206 3.947279 CGACAAACGGTGTATGCTG 57.053 52.632 0.00 0.00 41.96 4.41
217 218 7.327761 GCTTAGAAACTGTACTGATACGACAAA 59.672 37.037 6.77 0.00 33.60 2.83
218 219 6.805271 GCTTAGAAACTGTACTGATACGACAA 59.195 38.462 6.77 0.00 33.60 3.18
219 220 6.150641 AGCTTAGAAACTGTACTGATACGACA 59.849 38.462 6.77 0.00 33.60 4.35
220 221 6.553524 AGCTTAGAAACTGTACTGATACGAC 58.446 40.000 6.77 0.00 33.60 4.34
222 223 6.911511 GGTAGCTTAGAAACTGTACTGATACG 59.088 42.308 6.77 0.00 33.60 3.06
223 224 7.769220 TGGTAGCTTAGAAACTGTACTGATAC 58.231 38.462 6.77 0.00 0.00 2.24
225 226 6.127310 CCTGGTAGCTTAGAAACTGTACTGAT 60.127 42.308 6.77 0.00 0.00 2.90
226 227 5.185249 CCTGGTAGCTTAGAAACTGTACTGA 59.815 44.000 6.77 0.00 0.00 3.41
228 229 5.331069 TCCTGGTAGCTTAGAAACTGTACT 58.669 41.667 0.00 0.00 0.00 2.73
229 230 5.656213 TCCTGGTAGCTTAGAAACTGTAC 57.344 43.478 0.00 0.00 0.00 2.90
230 231 6.675413 TTTCCTGGTAGCTTAGAAACTGTA 57.325 37.500 0.00 0.00 0.00 2.74
231 232 5.562298 TTTCCTGGTAGCTTAGAAACTGT 57.438 39.130 0.00 0.00 0.00 3.55
232 233 7.556844 TCTATTTCCTGGTAGCTTAGAAACTG 58.443 38.462 0.00 4.41 29.89 3.16
233 234 7.633991 GCTCTATTTCCTGGTAGCTTAGAAACT 60.634 40.741 0.00 0.00 29.89 2.66
234 235 6.480651 GCTCTATTTCCTGGTAGCTTAGAAAC 59.519 42.308 0.00 0.00 29.89 2.78
235 236 6.408206 GGCTCTATTTCCTGGTAGCTTAGAAA 60.408 42.308 0.00 6.92 0.00 2.52
236 237 5.070580 GGCTCTATTTCCTGGTAGCTTAGAA 59.929 44.000 0.00 0.00 0.00 2.10
237 238 4.589374 GGCTCTATTTCCTGGTAGCTTAGA 59.411 45.833 0.00 0.00 0.00 2.10
238 239 4.262678 GGGCTCTATTTCCTGGTAGCTTAG 60.263 50.000 0.00 0.00 0.00 2.18
239 240 3.646637 GGGCTCTATTTCCTGGTAGCTTA 59.353 47.826 0.00 0.00 0.00 3.09
240 241 2.439880 GGGCTCTATTTCCTGGTAGCTT 59.560 50.000 0.00 0.00 0.00 3.74
242 243 2.050918 AGGGCTCTATTTCCTGGTAGC 58.949 52.381 0.00 0.00 0.00 3.58
243 244 3.835395 CCTAGGGCTCTATTTCCTGGTAG 59.165 52.174 0.00 0.00 32.46 3.18
244 245 3.469771 TCCTAGGGCTCTATTTCCTGGTA 59.530 47.826 9.46 0.00 32.46 3.25
245 246 2.250273 TCCTAGGGCTCTATTTCCTGGT 59.750 50.000 9.46 0.00 32.46 4.00
248 249 2.615391 GCTCCTAGGGCTCTATTTCCT 58.385 52.381 9.46 0.00 34.85 3.36
249 250 1.273886 CGCTCCTAGGGCTCTATTTCC 59.726 57.143 9.46 0.00 0.00 3.13
250 251 2.240279 TCGCTCCTAGGGCTCTATTTC 58.760 52.381 9.46 0.00 0.00 2.17
252 253 2.042433 AGATCGCTCCTAGGGCTCTATT 59.958 50.000 9.46 0.00 32.86 1.73
253 254 1.638589 AGATCGCTCCTAGGGCTCTAT 59.361 52.381 9.46 5.34 32.86 1.98
254 255 1.068948 AGATCGCTCCTAGGGCTCTA 58.931 55.000 9.46 0.00 32.86 2.43
255 256 0.187361 AAGATCGCTCCTAGGGCTCT 59.813 55.000 9.46 8.32 35.55 4.09
256 257 0.316841 CAAGATCGCTCCTAGGGCTC 59.683 60.000 9.46 6.21 0.00 4.70
259 260 1.115467 ACACAAGATCGCTCCTAGGG 58.885 55.000 9.46 0.44 0.00 3.53
260 261 2.969628 AACACAAGATCGCTCCTAGG 57.030 50.000 0.82 0.82 0.00 3.02
280 281 0.825425 TGCTGGGCCATCACGAAAAA 60.825 50.000 6.72 0.00 0.00 1.94
286 287 3.064324 GGTGTGCTGGGCCATCAC 61.064 66.667 28.90 28.90 32.04 3.06
288 289 2.753043 CTGGTGTGCTGGGCCATC 60.753 66.667 6.72 2.53 0.00 3.51
293 294 4.729918 GGGAGCTGGTGTGCTGGG 62.730 72.222 0.00 0.00 44.17 4.45
295 296 3.644606 AGGGGAGCTGGTGTGCTG 61.645 66.667 0.00 0.00 44.17 4.41
298 299 4.729918 GGCAGGGGAGCTGGTGTG 62.730 72.222 0.00 0.00 34.17 3.82
301 302 3.658346 TATGGGCAGGGGAGCTGGT 62.658 63.158 0.00 0.00 34.17 4.00
304 305 1.214305 TTTGTATGGGCAGGGGAGCT 61.214 55.000 0.00 0.00 34.17 4.09
305 306 0.753111 CTTTGTATGGGCAGGGGAGC 60.753 60.000 0.00 0.00 0.00 4.70
306 307 0.625849 ACTTTGTATGGGCAGGGGAG 59.374 55.000 0.00 0.00 0.00 4.30
307 308 1.562475 GTACTTTGTATGGGCAGGGGA 59.438 52.381 0.00 0.00 0.00 4.81
308 309 1.564348 AGTACTTTGTATGGGCAGGGG 59.436 52.381 0.00 0.00 0.00 4.79
309 310 2.238646 TGAGTACTTTGTATGGGCAGGG 59.761 50.000 0.00 0.00 0.00 4.45
310 311 3.627395 TGAGTACTTTGTATGGGCAGG 57.373 47.619 0.00 0.00 0.00 4.85
311 312 3.689649 GGTTGAGTACTTTGTATGGGCAG 59.310 47.826 0.00 0.00 0.00 4.85
312 313 3.681593 GGTTGAGTACTTTGTATGGGCA 58.318 45.455 0.00 0.00 0.00 5.36
313 314 2.676342 CGGTTGAGTACTTTGTATGGGC 59.324 50.000 0.00 0.00 0.00 5.36
314 315 3.930848 GTCGGTTGAGTACTTTGTATGGG 59.069 47.826 0.00 0.00 0.00 4.00
315 316 4.817517 AGTCGGTTGAGTACTTTGTATGG 58.182 43.478 0.00 0.00 0.00 2.74
318 319 4.262164 GGGAAGTCGGTTGAGTACTTTGTA 60.262 45.833 0.00 0.00 33.72 2.41
319 320 3.493873 GGGAAGTCGGTTGAGTACTTTGT 60.494 47.826 0.00 0.00 33.72 2.83
320 321 3.064931 GGGAAGTCGGTTGAGTACTTTG 58.935 50.000 0.00 0.00 33.72 2.77
324 325 4.525912 TTTAGGGAAGTCGGTTGAGTAC 57.474 45.455 0.00 0.00 0.00 2.73
325 326 5.549742 TTTTTAGGGAAGTCGGTTGAGTA 57.450 39.130 0.00 0.00 0.00 2.59
326 327 4.426736 TTTTTAGGGAAGTCGGTTGAGT 57.573 40.909 0.00 0.00 0.00 3.41
347 348 3.907894 AATGTCGGTTGCGTACATTTT 57.092 38.095 0.00 0.00 40.07 1.82
348 349 4.691685 TCTTAATGTCGGTTGCGTACATTT 59.308 37.500 5.36 0.00 42.31 2.32
349 350 4.247258 TCTTAATGTCGGTTGCGTACATT 58.753 39.130 0.00 0.00 44.01 2.71
352 353 3.248266 ACTCTTAATGTCGGTTGCGTAC 58.752 45.455 0.00 0.00 0.00 3.67
353 354 3.192001 AGACTCTTAATGTCGGTTGCGTA 59.808 43.478 3.96 0.00 39.24 4.42
355 356 2.345641 CAGACTCTTAATGTCGGTTGCG 59.654 50.000 3.96 0.00 39.24 4.85
356 357 2.673368 CCAGACTCTTAATGTCGGTTGC 59.327 50.000 7.63 0.00 39.24 4.17
357 358 3.926616 ACCAGACTCTTAATGTCGGTTG 58.073 45.455 13.71 5.32 37.74 3.77
359 360 3.162666 TGACCAGACTCTTAATGTCGGT 58.837 45.455 16.70 16.70 40.82 4.69
360 361 3.868757 TGACCAGACTCTTAATGTCGG 57.131 47.619 12.93 12.93 39.24 4.79
362 363 5.639931 GGAGTTTGACCAGACTCTTAATGTC 59.360 44.000 16.79 1.78 40.97 3.06
364 365 5.799213 AGGAGTTTGACCAGACTCTTAATG 58.201 41.667 16.79 0.00 40.97 1.90
365 366 5.544176 TGAGGAGTTTGACCAGACTCTTAAT 59.456 40.000 16.79 4.99 40.97 1.40
366 367 4.899457 TGAGGAGTTTGACCAGACTCTTAA 59.101 41.667 16.79 3.87 40.97 1.85
367 368 4.281182 GTGAGGAGTTTGACCAGACTCTTA 59.719 45.833 16.79 5.00 40.97 2.10
368 369 3.070302 GTGAGGAGTTTGACCAGACTCTT 59.930 47.826 16.79 11.48 40.97 2.85
370 371 2.289133 GGTGAGGAGTTTGACCAGACTC 60.289 54.545 11.03 11.03 40.61 3.36
371 372 1.694696 GGTGAGGAGTTTGACCAGACT 59.305 52.381 0.00 0.00 0.00 3.24
372 373 1.270893 GGGTGAGGAGTTTGACCAGAC 60.271 57.143 0.00 0.00 0.00 3.51
373 374 1.056660 GGGTGAGGAGTTTGACCAGA 58.943 55.000 0.00 0.00 0.00 3.86
374 375 0.036875 GGGGTGAGGAGTTTGACCAG 59.963 60.000 0.00 0.00 0.00 4.00
375 376 1.764571 CGGGGTGAGGAGTTTGACCA 61.765 60.000 0.00 0.00 0.00 4.02
376 377 1.003718 CGGGGTGAGGAGTTTGACC 60.004 63.158 0.00 0.00 0.00 4.02
377 378 1.671379 GCGGGGTGAGGAGTTTGAC 60.671 63.158 0.00 0.00 0.00 3.18
378 379 1.488705 ATGCGGGGTGAGGAGTTTGA 61.489 55.000 0.00 0.00 0.00 2.69
379 380 1.002134 ATGCGGGGTGAGGAGTTTG 60.002 57.895 0.00 0.00 0.00 2.93
383 384 1.903877 AAGACATGCGGGGTGAGGAG 61.904 60.000 0.00 0.00 0.00 3.69
384 385 1.488705 AAAGACATGCGGGGTGAGGA 61.489 55.000 0.00 0.00 0.00 3.71
388 389 1.926511 GCAGAAAGACATGCGGGGTG 61.927 60.000 0.00 0.00 31.87 4.61
389 390 1.675641 GCAGAAAGACATGCGGGGT 60.676 57.895 0.00 0.00 31.87 4.95
394 395 3.360249 ACACAAAGCAGAAAGACATGC 57.640 42.857 0.00 0.00 42.87 4.06
395 396 5.342433 TGAAACACAAAGCAGAAAGACATG 58.658 37.500 0.00 0.00 0.00 3.21
396 397 5.581126 TGAAACACAAAGCAGAAAGACAT 57.419 34.783 0.00 0.00 0.00 3.06
397 398 5.182950 TCTTGAAACACAAAGCAGAAAGACA 59.817 36.000 0.00 0.00 38.08 3.41
398 399 5.640732 TCTTGAAACACAAAGCAGAAAGAC 58.359 37.500 0.00 0.00 38.08 3.01
399 400 5.647658 TCTCTTGAAACACAAAGCAGAAAGA 59.352 36.000 0.00 0.00 38.08 2.52
400 401 5.883661 TCTCTTGAAACACAAAGCAGAAAG 58.116 37.500 0.00 0.00 38.08 2.62
401 402 5.647658 TCTCTCTTGAAACACAAAGCAGAAA 59.352 36.000 0.00 0.00 38.08 2.52
402 403 5.185454 TCTCTCTTGAAACACAAAGCAGAA 58.815 37.500 0.00 0.00 38.08 3.02
403 404 4.769688 TCTCTCTTGAAACACAAAGCAGA 58.230 39.130 0.00 0.00 38.08 4.26
404 405 4.813161 TCTCTCTCTTGAAACACAAAGCAG 59.187 41.667 0.00 0.00 38.08 4.24
407 408 5.605534 TCCTCTCTCTCTTGAAACACAAAG 58.394 41.667 0.00 0.00 38.08 2.77
408 409 5.453903 CCTCCTCTCTCTCTTGAAACACAAA 60.454 44.000 0.00 0.00 38.08 2.83
409 410 4.039730 CCTCCTCTCTCTCTTGAAACACAA 59.960 45.833 0.00 0.00 36.97 3.33
410 411 3.576118 CCTCCTCTCTCTCTTGAAACACA 59.424 47.826 0.00 0.00 0.00 3.72
411 412 3.056179 CCCTCCTCTCTCTCTTGAAACAC 60.056 52.174 0.00 0.00 0.00 3.32
412 413 3.169099 CCCTCCTCTCTCTCTTGAAACA 58.831 50.000 0.00 0.00 0.00 2.83
413 414 2.499693 CCCCTCCTCTCTCTCTTGAAAC 59.500 54.545 0.00 0.00 0.00 2.78
414 415 2.826488 CCCCTCCTCTCTCTCTTGAAA 58.174 52.381 0.00 0.00 0.00 2.69
415 416 1.621072 GCCCCTCCTCTCTCTCTTGAA 60.621 57.143 0.00 0.00 0.00 2.69
416 417 0.032615 GCCCCTCCTCTCTCTCTTGA 60.033 60.000 0.00 0.00 0.00 3.02
418 419 1.076339 CGCCCCTCCTCTCTCTCTT 60.076 63.158 0.00 0.00 0.00 2.85
419 420 1.360393 ATCGCCCCTCCTCTCTCTCT 61.360 60.000 0.00 0.00 0.00 3.10
420 421 0.469144 AATCGCCCCTCCTCTCTCTC 60.469 60.000 0.00 0.00 0.00 3.20
421 422 0.031616 AAATCGCCCCTCCTCTCTCT 60.032 55.000 0.00 0.00 0.00 3.10
423 424 1.341156 CCAAATCGCCCCTCCTCTCT 61.341 60.000 0.00 0.00 0.00 3.10
424 425 1.147153 CCAAATCGCCCCTCCTCTC 59.853 63.158 0.00 0.00 0.00 3.20
425 426 2.378634 CCCAAATCGCCCCTCCTCT 61.379 63.158 0.00 0.00 0.00 3.69
427 428 3.420482 CCCCAAATCGCCCCTCCT 61.420 66.667 0.00 0.00 0.00 3.69
428 429 4.522975 CCCCCAAATCGCCCCTCC 62.523 72.222 0.00 0.00 0.00 4.30
429 430 3.416880 TCCCCCAAATCGCCCCTC 61.417 66.667 0.00 0.00 0.00 4.30
430 431 3.739613 GTCCCCCAAATCGCCCCT 61.740 66.667 0.00 0.00 0.00 4.79
431 432 3.593771 TTGTCCCCCAAATCGCCCC 62.594 63.158 0.00 0.00 0.00 5.80
432 433 2.036572 TTGTCCCCCAAATCGCCC 59.963 61.111 0.00 0.00 0.00 6.13
433 434 2.052104 CCTTGTCCCCCAAATCGCC 61.052 63.158 0.00 0.00 31.20 5.54
437 438 0.037734 GTCGACCTTGTCCCCCAAAT 59.962 55.000 3.51 0.00 31.20 2.32
438 439 1.452801 GTCGACCTTGTCCCCCAAA 59.547 57.895 3.51 0.00 31.20 3.28
439 440 2.522367 GGTCGACCTTGTCCCCCAA 61.522 63.158 27.64 0.00 0.00 4.12
441 442 2.926242 TGGTCGACCTTGTCCCCC 60.926 66.667 33.39 6.04 36.82 5.40
442 443 2.346365 GTGGTCGACCTTGTCCCC 59.654 66.667 33.39 6.83 36.82 4.81
443 444 2.346365 GGTGGTCGACCTTGTCCC 59.654 66.667 33.39 20.59 42.25 4.46
444 445 2.048503 CGGTGGTCGACCTTGTCC 60.049 66.667 33.39 25.71 43.55 4.02
445 446 2.048503 CCGGTGGTCGACCTTGTC 60.049 66.667 33.39 20.14 43.55 3.18
446 447 2.841044 ACCGGTGGTCGACCTTGT 60.841 61.111 33.39 21.29 43.55 3.16
447 448 2.357034 CACCGGTGGTCGACCTTG 60.357 66.667 33.39 22.06 43.55 3.61
448 449 4.309950 GCACCGGTGGTCGACCTT 62.310 66.667 34.58 11.27 43.55 3.50
450 451 4.309950 AAGCACCGGTGGTCGACC 62.310 66.667 37.18 28.17 40.87 4.79
452 453 4.980805 GCAAGCACCGGTGGTCGA 62.981 66.667 37.18 0.00 40.87 4.20
454 455 2.904866 TTGCAAGCACCGGTGGTC 60.905 61.111 37.18 26.11 40.87 4.02
455 456 3.216292 GTTGCAAGCACCGGTGGT 61.216 61.111 32.82 32.82 44.00 4.16
456 457 2.489275 AAGTTGCAAGCACCGGTGG 61.489 57.895 34.58 19.86 0.00 4.61
457 458 1.299316 CAAGTTGCAAGCACCGGTG 60.299 57.895 30.66 30.66 0.00 4.94
459 460 2.336088 CCAAGTTGCAAGCACCGG 59.664 61.111 0.00 0.00 0.00 5.28
461 462 1.067916 CACCCAAGTTGCAAGCACC 59.932 57.895 0.00 0.00 0.00 5.01
462 463 0.031178 CTCACCCAAGTTGCAAGCAC 59.969 55.000 0.00 0.00 0.00 4.40
463 464 1.108727 CCTCACCCAAGTTGCAAGCA 61.109 55.000 0.00 0.00 0.00 3.91
464 465 1.662044 CCTCACCCAAGTTGCAAGC 59.338 57.895 0.00 0.00 0.00 4.01
466 467 0.032615 AACCCTCACCCAAGTTGCAA 60.033 50.000 0.00 0.00 0.00 4.08
468 469 1.886542 CTTAACCCTCACCCAAGTTGC 59.113 52.381 0.00 0.00 0.00 4.17
469 470 3.223674 ACTTAACCCTCACCCAAGTTG 57.776 47.619 0.00 0.00 0.00 3.16
470 471 3.562182 CAACTTAACCCTCACCCAAGTT 58.438 45.455 0.00 0.00 39.39 2.66
471 472 2.158519 CCAACTTAACCCTCACCCAAGT 60.159 50.000 0.00 0.00 0.00 3.16
472 473 2.514803 CCAACTTAACCCTCACCCAAG 58.485 52.381 0.00 0.00 0.00 3.61
473 474 1.146152 CCCAACTTAACCCTCACCCAA 59.854 52.381 0.00 0.00 0.00 4.12
474 475 0.774908 CCCAACTTAACCCTCACCCA 59.225 55.000 0.00 0.00 0.00 4.51
475 476 0.611062 GCCCAACTTAACCCTCACCC 60.611 60.000 0.00 0.00 0.00 4.61
476 477 0.958876 CGCCCAACTTAACCCTCACC 60.959 60.000 0.00 0.00 0.00 4.02
477 478 0.035739 TCGCCCAACTTAACCCTCAC 59.964 55.000 0.00 0.00 0.00 3.51
478 479 0.323629 CTCGCCCAACTTAACCCTCA 59.676 55.000 0.00 0.00 0.00 3.86
479 480 0.392595 CCTCGCCCAACTTAACCCTC 60.393 60.000 0.00 0.00 0.00 4.30
480 481 1.131928 ACCTCGCCCAACTTAACCCT 61.132 55.000 0.00 0.00 0.00 4.34
481 482 0.958876 CACCTCGCCCAACTTAACCC 60.959 60.000 0.00 0.00 0.00 4.11
483 484 0.250597 ACCACCTCGCCCAACTTAAC 60.251 55.000 0.00 0.00 0.00 2.01
484 485 0.475044 AACCACCTCGCCCAACTTAA 59.525 50.000 0.00 0.00 0.00 1.85
485 486 0.250553 CAACCACCTCGCCCAACTTA 60.251 55.000 0.00 0.00 0.00 2.24
486 487 1.528309 CAACCACCTCGCCCAACTT 60.528 57.895 0.00 0.00 0.00 2.66
487 488 2.113139 CAACCACCTCGCCCAACT 59.887 61.111 0.00 0.00 0.00 3.16
488 489 3.670377 GCAACCACCTCGCCCAAC 61.670 66.667 0.00 0.00 0.00 3.77
489 490 3.884774 AGCAACCACCTCGCCCAA 61.885 61.111 0.00 0.00 0.00 4.12
490 491 4.641645 CAGCAACCACCTCGCCCA 62.642 66.667 0.00 0.00 0.00 5.36
492 493 4.329545 TCCAGCAACCACCTCGCC 62.330 66.667 0.00 0.00 0.00 5.54
493 494 2.743928 CTCCAGCAACCACCTCGC 60.744 66.667 0.00 0.00 0.00 5.03
494 495 1.374758 GTCTCCAGCAACCACCTCG 60.375 63.158 0.00 0.00 0.00 4.63
496 497 0.773644 ATTGTCTCCAGCAACCACCT 59.226 50.000 0.00 0.00 0.00 4.00
497 498 0.883833 CATTGTCTCCAGCAACCACC 59.116 55.000 0.00 0.00 0.00 4.61
498 499 1.896220 TCATTGTCTCCAGCAACCAC 58.104 50.000 0.00 0.00 0.00 4.16
499 500 2.885135 ATCATTGTCTCCAGCAACCA 57.115 45.000 0.00 0.00 0.00 3.67
500 501 4.096984 CCTTTATCATTGTCTCCAGCAACC 59.903 45.833 0.00 0.00 0.00 3.77
501 502 4.943705 TCCTTTATCATTGTCTCCAGCAAC 59.056 41.667 0.00 0.00 0.00 4.17
504 505 6.705863 ATTTCCTTTATCATTGTCTCCAGC 57.294 37.500 0.00 0.00 0.00 4.85
505 506 8.295288 GCATATTTCCTTTATCATTGTCTCCAG 58.705 37.037 0.00 0.00 0.00 3.86
507 508 7.449704 AGGCATATTTCCTTTATCATTGTCTCC 59.550 37.037 0.00 0.00 0.00 3.71
508 509 8.401490 AGGCATATTTCCTTTATCATTGTCTC 57.599 34.615 0.00 0.00 0.00 3.36
510 511 9.507329 TCTAGGCATATTTCCTTTATCATTGTC 57.493 33.333 0.00 0.00 35.21 3.18
511 512 9.512588 CTCTAGGCATATTTCCTTTATCATTGT 57.487 33.333 0.00 0.00 35.21 2.71
512 513 9.730705 TCTCTAGGCATATTTCCTTTATCATTG 57.269 33.333 0.00 0.00 35.21 2.82
513 514 9.732130 GTCTCTAGGCATATTTCCTTTATCATT 57.268 33.333 0.00 0.00 35.21 2.57
516 517 9.732130 ATTGTCTCTAGGCATATTTCCTTTATC 57.268 33.333 0.00 0.00 35.21 1.75
593 594 8.921670 GTTTTCGGTTAATACAATTCTTGCATT 58.078 29.630 0.00 0.00 31.82 3.56
594 595 8.303876 AGTTTTCGGTTAATACAATTCTTGCAT 58.696 29.630 0.00 0.00 0.00 3.96
595 596 7.653647 AGTTTTCGGTTAATACAATTCTTGCA 58.346 30.769 0.00 0.00 0.00 4.08
596 597 8.424731 CAAGTTTTCGGTTAATACAATTCTTGC 58.575 33.333 0.00 0.00 0.00 4.01
604 605 9.221933 ACATGTATCAAGTTTTCGGTTAATACA 57.778 29.630 0.00 0.00 34.10 2.29
605 606 9.485591 CACATGTATCAAGTTTTCGGTTAATAC 57.514 33.333 0.00 0.00 0.00 1.89
606 607 9.221933 ACACATGTATCAAGTTTTCGGTTAATA 57.778 29.630 0.00 0.00 0.00 0.98
608 609 7.226918 TCACACATGTATCAAGTTTTCGGTTAA 59.773 33.333 0.00 0.00 0.00 2.01
609 610 6.706716 TCACACATGTATCAAGTTTTCGGTTA 59.293 34.615 0.00 0.00 0.00 2.85
610 611 5.529430 TCACACATGTATCAAGTTTTCGGTT 59.471 36.000 0.00 0.00 0.00 4.44
611 612 5.060506 TCACACATGTATCAAGTTTTCGGT 58.939 37.500 0.00 0.00 0.00 4.69
612 613 5.605564 TCACACATGTATCAAGTTTTCGG 57.394 39.130 0.00 0.00 0.00 4.30
619 620 9.533253 TGTCTATGTATTCACACATGTATCAAG 57.467 33.333 0.00 0.00 39.46 3.02
621 622 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
626 627 9.935682 GGTATTTTGTCTATGTATTCACACATG 57.064 33.333 0.00 0.00 39.46 3.21
627 628 9.679661 TGGTATTTTGTCTATGTATTCACACAT 57.320 29.630 0.00 0.00 41.88 3.21
628 629 9.679661 ATGGTATTTTGTCTATGTATTCACACA 57.320 29.630 0.00 0.00 37.54 3.72
630 631 9.679661 ACATGGTATTTTGTCTATGTATTCACA 57.320 29.630 0.00 0.00 39.52 3.58
633 634 8.784043 GGGACATGGTATTTTGTCTATGTATTC 58.216 37.037 0.00 0.00 41.55 1.75
634 635 8.502738 AGGGACATGGTATTTTGTCTATGTATT 58.497 33.333 0.00 0.00 41.55 1.89
636 637 7.446106 AGGGACATGGTATTTTGTCTATGTA 57.554 36.000 0.00 0.00 41.55 2.29
637 638 6.327386 AGGGACATGGTATTTTGTCTATGT 57.673 37.500 0.00 0.00 41.55 2.29
640 641 6.183360 CGACTAGGGACATGGTATTTTGTCTA 60.183 42.308 0.00 0.00 41.55 2.59
643 644 4.383770 CCGACTAGGGACATGGTATTTTGT 60.384 45.833 0.00 0.00 35.97 2.83
644 645 4.127171 CCGACTAGGGACATGGTATTTTG 58.873 47.826 0.00 0.00 35.97 2.44
645 646 4.035112 TCCGACTAGGGACATGGTATTTT 58.965 43.478 0.00 0.00 41.52 1.82
646 647 3.649843 TCCGACTAGGGACATGGTATTT 58.350 45.455 0.00 0.00 41.52 1.40
648 649 3.323774 TTCCGACTAGGGACATGGTAT 57.676 47.619 0.00 0.00 41.52 2.73
650 651 2.176247 ATTCCGACTAGGGACATGGT 57.824 50.000 0.00 0.00 41.52 3.55
651 652 2.434336 TGAATTCCGACTAGGGACATGG 59.566 50.000 2.27 0.00 41.52 3.66
652 653 3.819564 TGAATTCCGACTAGGGACATG 57.180 47.619 2.27 0.00 41.52 3.21
653 654 3.432326 GCTTGAATTCCGACTAGGGACAT 60.432 47.826 2.27 0.00 41.52 3.06
654 655 2.093658 GCTTGAATTCCGACTAGGGACA 60.094 50.000 2.27 0.00 41.52 4.02
655 656 2.168728 AGCTTGAATTCCGACTAGGGAC 59.831 50.000 2.27 0.00 41.52 4.46
657 658 2.168521 TCAGCTTGAATTCCGACTAGGG 59.831 50.000 2.27 0.00 41.52 3.53
659 660 6.428385 AATTTCAGCTTGAATTCCGACTAG 57.572 37.500 2.27 0.00 36.11 2.57
660 661 6.817765 AAATTTCAGCTTGAATTCCGACTA 57.182 33.333 2.27 0.00 36.11 2.59
661 662 5.712152 AAATTTCAGCTTGAATTCCGACT 57.288 34.783 2.27 0.00 36.11 4.18
662 663 7.754924 TGAATAAATTTCAGCTTGAATTCCGAC 59.245 33.333 2.27 0.00 36.11 4.79
664 665 8.112099 CTGAATAAATTTCAGCTTGAATTCCG 57.888 34.615 2.27 0.00 39.36 4.30
712 3910 1.264288 CTTGAACAGTGCCGGTTTCTC 59.736 52.381 1.90 0.00 0.00 2.87
713 3911 1.308998 CTTGAACAGTGCCGGTTTCT 58.691 50.000 1.90 0.00 0.00 2.52
717 3922 0.756903 AGTACTTGAACAGTGCCGGT 59.243 50.000 1.90 0.00 38.88 5.28
719 3924 2.348666 GCATAGTACTTGAACAGTGCCG 59.651 50.000 0.00 0.00 38.88 5.69
735 3940 4.980434 GCATTTCAAGTGGCTATTGCATAG 59.020 41.667 0.66 0.00 41.91 2.23
752 3958 1.601903 TCACAACACGTGGAGCATTTC 59.398 47.619 21.57 0.00 46.36 2.17
795 4001 3.964875 GCCACAACGTGCCACCAG 61.965 66.667 0.00 0.00 31.34 4.00
894 4101 0.252558 AAGGACGGGAGGAGGCTTTA 60.253 55.000 0.00 0.00 0.00 1.85
899 4106 1.306226 AAGGAAGGACGGGAGGAGG 60.306 63.158 0.00 0.00 0.00 4.30
943 4154 1.609208 CTGGTCAGGAGGTTTGGTTG 58.391 55.000 0.00 0.00 0.00 3.77
956 4167 0.607112 CTCTCTTGCTCTGCTGGTCA 59.393 55.000 0.00 0.00 0.00 4.02
1086 4319 1.071699 GGGGATGGATTGCTTACGCTA 59.928 52.381 0.00 0.00 36.97 4.26
1116 4349 3.344215 CAGCATGGATCGCCTCGC 61.344 66.667 0.00 0.00 34.31 5.03
1161 4425 8.974060 ACAGAAAGAAAGACCAATAAACACTA 57.026 30.769 0.00 0.00 0.00 2.74
1168 4432 5.003804 GGCAGACAGAAAGAAAGACCAATA 58.996 41.667 0.00 0.00 0.00 1.90
1327 4596 4.041740 TGAGGTGCTACACGATATCAAC 57.958 45.455 3.12 0.00 34.83 3.18
1344 4613 1.368345 TTGATTCGCACGGCATGAGG 61.368 55.000 0.00 0.00 0.00 3.86
1368 4637 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
1524 4817 2.281900 TGGCGTAAACCAGTGGGC 60.282 61.111 15.21 6.45 37.90 5.36
1562 4855 1.464997 GGATCGCAACTCCTGTTTGTC 59.535 52.381 0.00 0.00 33.52 3.18
1563 4856 1.523758 GGATCGCAACTCCTGTTTGT 58.476 50.000 0.00 0.00 33.52 2.83
1564 4857 0.804989 GGGATCGCAACTCCTGTTTG 59.195 55.000 4.64 0.00 33.52 2.93
1576 4872 2.432123 GGGGAATCCTGGGATCGC 59.568 66.667 2.14 2.14 33.08 4.58
1663 4962 0.455410 AGAGTCGACAGCATCTCTGC 59.545 55.000 19.50 0.00 46.76 4.26
1664 4963 2.016318 AGAGAGTCGACAGCATCTCTG 58.984 52.381 25.74 0.00 45.18 3.35
1665 4964 2.418368 AGAGAGTCGACAGCATCTCT 57.582 50.000 22.60 22.60 42.81 3.10
1666 4965 2.013400 TGAGAGAGTCGACAGCATCTC 58.987 52.381 19.50 19.55 38.77 2.75
1677 5572 5.278022 GGTTTGTTTTGGACATGAGAGAGTC 60.278 44.000 0.00 0.00 38.26 3.36
1679 5574 4.319766 CGGTTTGTTTTGGACATGAGAGAG 60.320 45.833 0.00 0.00 38.26 3.20
1680 5575 3.563808 CGGTTTGTTTTGGACATGAGAGA 59.436 43.478 0.00 0.00 38.26 3.10
1681 5576 3.853307 GCGGTTTGTTTTGGACATGAGAG 60.853 47.826 0.00 0.00 38.26 3.20
1682 5577 2.034053 GCGGTTTGTTTTGGACATGAGA 59.966 45.455 0.00 0.00 38.26 3.27
1683 5578 2.393764 GCGGTTTGTTTTGGACATGAG 58.606 47.619 0.00 0.00 38.26 2.90
1684 5579 1.067821 GGCGGTTTGTTTTGGACATGA 59.932 47.619 0.00 0.00 38.26 3.07
1685 5580 1.496934 GGCGGTTTGTTTTGGACATG 58.503 50.000 0.00 0.00 38.26 3.21
1777 7888 2.863153 CAAACCTCTGCTTCGCCG 59.137 61.111 0.00 0.00 0.00 6.46
1778 7889 2.563427 GCAAACCTCTGCTTCGCC 59.437 61.111 0.00 0.00 39.34 5.54
1798 7913 4.316645 CCCATCACATGAGATCAGATCAC 58.683 47.826 13.14 7.03 0.00 3.06
1929 8084 2.253603 GCCTCAAAATGTAAAGCAGCG 58.746 47.619 0.00 0.00 0.00 5.18
1953 8120 4.373116 AGTGCCGCCGAACATCGT 62.373 61.111 0.00 0.00 38.40 3.73
1957 8124 2.031919 AATCAGTGCCGCCGAACA 59.968 55.556 0.00 0.00 0.00 3.18
1958 8125 2.032634 TCAATCAGTGCCGCCGAAC 61.033 57.895 0.00 0.00 0.00 3.95
1959 8126 2.032634 GTCAATCAGTGCCGCCGAA 61.033 57.895 0.00 0.00 0.00 4.30
2024 8225 6.942532 TTAATTTGGTAGCATAGAAGGCTG 57.057 37.500 0.00 0.00 42.62 4.85
2031 8232 6.861065 ACACGGATTAATTTGGTAGCATAG 57.139 37.500 0.00 0.00 0.00 2.23
2065 8310 3.902162 GAGCGTGCGTCAACGGGTA 62.902 63.158 4.54 0.00 43.75 3.69
2090 8335 4.569966 CGAAGGGAATGAGTCAAATCAGAG 59.430 45.833 0.00 0.00 31.44 3.35
2111 8356 1.346365 GCTGTTGCGTAGAATGACGA 58.654 50.000 0.00 0.00 45.82 4.20
2187 8432 0.400594 GCACTAAAGTGGACCCCAGT 59.599 55.000 11.86 0.00 45.72 4.00
2188 8433 0.322546 GGCACTAAAGTGGACCCCAG 60.323 60.000 11.86 0.00 45.72 4.45
2189 8434 0.770557 AGGCACTAAAGTGGACCCCA 60.771 55.000 11.86 0.00 45.72 4.96
2190 8435 1.282382 TAGGCACTAAAGTGGACCCC 58.718 55.000 11.86 4.60 45.72 4.95
2226 8471 6.599437 CGTCAAATTTTAGAACCAGTTCGAT 58.401 36.000 4.94 0.00 43.97 3.59
2244 8489 0.660488 ATTTGCACACTCGCGTCAAA 59.340 45.000 5.77 8.63 33.35 2.69
2267 8512 4.450976 ACGTCTATGAATGGCATTAGCAA 58.549 39.130 13.65 0.00 44.61 3.91
2302 8547 3.242739 GCCAATCAAATACTGTGCTACGG 60.243 47.826 0.00 0.00 0.00 4.02
2303 8548 3.544048 CGCCAATCAAATACTGTGCTACG 60.544 47.826 0.00 0.00 0.00 3.51
2306 8551 2.162208 CACGCCAATCAAATACTGTGCT 59.838 45.455 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.