Multiple sequence alignment - TraesCS5B01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G362100 chr5B 100.000 5892 0 0 1 5892 541608166 541614057 0.000000e+00 10881.0
1 TraesCS5B01G362100 chr5B 93.446 473 24 4 1472 1943 265540897 265540431 0.000000e+00 695.0
2 TraesCS5B01G362100 chr5B 93.333 45 3 0 5437 5481 617167249 617167205 3.810000e-07 67.6
3 TraesCS5B01G362100 chr5A 96.168 3079 91 11 2179 5246 561654769 561657831 0.000000e+00 5007.0
4 TraesCS5B01G362100 chr5A 88.466 867 63 21 1164 2015 561653924 561654768 0.000000e+00 1013.0
5 TraesCS5B01G362100 chr5A 85.447 749 56 18 345 1053 561652739 561653474 0.000000e+00 730.0
6 TraesCS5B01G362100 chr5A 93.023 473 27 3 1472 1943 27047114 27046647 0.000000e+00 686.0
7 TraesCS5B01G362100 chr5A 89.463 503 30 10 5398 5892 561658017 561658504 1.090000e-171 614.0
8 TraesCS5B01G362100 chr5A 88.931 262 27 2 1055 1315 183030106 183029846 7.370000e-84 322.0
9 TraesCS5B01G362100 chr5A 83.775 302 46 3 9 307 561652435 561652736 3.480000e-72 283.0
10 TraesCS5B01G362100 chr5A 93.651 63 1 3 5313 5373 561657955 561658016 2.260000e-14 91.6
11 TraesCS5B01G362100 chr5D 96.310 3035 86 10 2218 5246 444722590 444725604 0.000000e+00 4961.0
12 TraesCS5B01G362100 chr5D 88.728 1242 75 26 16 1221 444720386 444721598 0.000000e+00 1458.0
13 TraesCS5B01G362100 chr5D 91.849 503 33 7 5398 5892 444725745 444726247 0.000000e+00 695.0
14 TraesCS5B01G362100 chr5D 85.880 432 38 11 1257 1681 444721847 444722262 7.010000e-119 438.0
15 TraesCS5B01G362100 chr5D 95.882 170 7 0 2017 2186 189021914 189021745 5.820000e-70 276.0
16 TraesCS5B01G362100 chr5D 95.294 170 8 0 2012 2181 514941341 514941510 2.710000e-68 270.0
17 TraesCS5B01G362100 chr5D 93.548 62 3 1 5313 5373 444725683 444725744 2.260000e-14 91.6
18 TraesCS5B01G362100 chr7A 79.102 1158 238 4 3497 4652 377979777 377980932 0.000000e+00 795.0
19 TraesCS5B01G362100 chr7A 93.148 467 26 3 1472 1937 734439348 734439809 0.000000e+00 680.0
20 TraesCS5B01G362100 chr7A 99.425 174 0 1 2012 2185 34364002 34363830 1.230000e-81 315.0
21 TraesCS5B01G362100 chr7A 86.207 116 13 2 4859 4973 679866887 679866774 8.020000e-24 122.0
22 TraesCS5B01G362100 chr7D 78.952 1164 241 4 3497 4658 355563528 355562367 0.000000e+00 789.0
23 TraesCS5B01G362100 chr7D 96.970 165 5 0 2017 2181 552951678 552951514 1.620000e-70 278.0
24 TraesCS5B01G362100 chr7B 78.780 1164 243 4 3497 4658 307364540 307363379 0.000000e+00 778.0
25 TraesCS5B01G362100 chr7B 94.658 468 18 4 1472 1937 452415844 452416306 0.000000e+00 719.0
26 TraesCS5B01G362100 chr7B 89.936 467 22 6 1472 1937 122466106 122466548 3.960000e-161 579.0
27 TraesCS5B01G362100 chr7B 89.796 49 5 0 5437 5485 535699631 535699679 4.930000e-06 63.9
28 TraesCS5B01G362100 chr7B 91.111 45 4 0 5437 5481 498967205 498967161 1.770000e-05 62.1
29 TraesCS5B01G362100 chr3A 93.023 473 25 4 1472 1943 579914791 579914326 0.000000e+00 684.0
30 TraesCS5B01G362100 chr3A 92.719 467 26 3 1472 1937 675999378 675999837 0.000000e+00 667.0
31 TraesCS5B01G362100 chr2B 91.435 467 26 7 1472 1937 780646989 780647442 3.880000e-176 628.0
32 TraesCS5B01G362100 chr2B 95.349 172 8 0 2017 2188 121512213 121512042 2.090000e-69 274.0
33 TraesCS5B01G362100 chr2B 89.944 179 16 2 1472 1648 103770897 103770719 4.590000e-56 230.0
34 TraesCS5B01G362100 chr2B 93.333 45 3 0 5437 5481 476414769 476414725 3.810000e-07 67.6
35 TraesCS5B01G362100 chr4A 88.437 467 25 5 1472 1937 549630734 549631172 2.420000e-148 536.0
36 TraesCS5B01G362100 chr6A 89.734 263 25 1 1054 1316 162861684 162861424 9.460000e-88 335.0
37 TraesCS5B01G362100 chr6D 96.552 174 5 1 2008 2181 87478202 87478374 2.690000e-73 287.0
38 TraesCS5B01G362100 chr4D 95.833 168 7 0 2017 2184 28983045 28982878 7.520000e-69 272.0
39 TraesCS5B01G362100 chr3D 95.322 171 7 1 2013 2183 369651727 369651896 2.710000e-68 270.0
40 TraesCS5B01G362100 chr3D 83.471 121 16 3 5042 5160 17671872 17671754 6.240000e-20 110.0
41 TraesCS5B01G362100 chr3D 95.122 41 2 0 5438 5478 254341536 254341576 1.370000e-06 65.8
42 TraesCS5B01G362100 chr2D 94.318 176 9 1 2009 2184 486334912 486334738 9.730000e-68 268.0
43 TraesCS5B01G362100 chr2A 90.476 126 12 0 4534 4659 306014511 306014636 3.650000e-37 167.0
44 TraesCS5B01G362100 chrUn 84.810 79 12 0 5810 5888 93944224 93944146 4.890000e-11 80.5
45 TraesCS5B01G362100 chr1A 95.238 42 2 0 5437 5478 20084213 20084254 3.810000e-07 67.6
46 TraesCS5B01G362100 chr1A 93.333 45 3 0 5437 5481 312722101 312722057 3.810000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G362100 chr5B 541608166 541614057 5891 False 10881.000000 10881 100.000 1 5892 1 chr5B.!!$F1 5891
1 TraesCS5B01G362100 chr5A 561652435 561658504 6069 False 1289.766667 5007 89.495 9 5892 6 chr5A.!!$F1 5883
2 TraesCS5B01G362100 chr5D 444720386 444726247 5861 False 1528.720000 4961 91.263 16 5892 5 chr5D.!!$F2 5876
3 TraesCS5B01G362100 chr7A 377979777 377980932 1155 False 795.000000 795 79.102 3497 4652 1 chr7A.!!$F1 1155
4 TraesCS5B01G362100 chr7D 355562367 355563528 1161 True 789.000000 789 78.952 3497 4658 1 chr7D.!!$R1 1161
5 TraesCS5B01G362100 chr7B 307363379 307364540 1161 True 778.000000 778 78.780 3497 4658 1 chr7B.!!$R1 1161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.318120 CCCGTACTAAACCACACCGT 59.682 55.000 0.00 0.00 0.00 4.83 F
97 98 0.394488 CGAGACCTCACCAGCCTCTA 60.394 60.000 0.00 0.00 0.00 2.43 F
731 744 0.617413 TCGAGTCTCCGGTCTACCTT 59.383 55.000 0.00 0.00 0.00 3.50 F
1768 2399 0.599558 TCAGCCAAGCACAAATCTGC 59.400 50.000 0.00 0.00 37.44 4.26 F
2186 2826 1.206610 GGAACGGAGGGAGTAGTTTCC 59.793 57.143 0.00 0.00 36.46 3.13 F
2971 3620 0.676466 CGCCTGTTCATGCTTACCCA 60.676 55.000 0.00 0.00 0.00 4.51 F
3730 4384 0.674895 AAGCTTGTCCACGGAGATGC 60.675 55.000 11.79 11.79 38.33 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 2133 0.252284 ACGTCCTGGATCAGAAGGGT 60.252 55.000 0.00 0.0 34.08 4.34 R
1517 2146 0.382515 GAATCTAGCGAGCACGTCCT 59.617 55.000 5.23 0.0 41.98 3.85 R
1924 2560 0.808755 CCCCGGTGTATCAAACAAGC 59.191 55.000 0.00 0.0 40.63 4.01 R
2952 3601 0.676466 TGGGTAAGCATGAACAGGCG 60.676 55.000 0.00 0.0 43.74 5.52 R
3730 4384 0.811281 GTTGATTGGAGGGCGGAAAG 59.189 55.000 0.00 0.0 0.00 2.62 R
4469 5123 1.405821 CCAGCGTACAGGAAGAGGTAG 59.594 57.143 0.00 0.0 0.00 3.18 R
5283 5996 0.257328 TGACCTCCCACAAGTGCAAA 59.743 50.000 0.00 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.884464 CATCACACCTCGATGCCCG 60.884 63.158 0.00 0.00 34.32 6.13
53 54 0.318120 CCCGTACTAAACCACACCGT 59.682 55.000 0.00 0.00 0.00 4.83
80 81 0.395724 TCTGATGGCCTAGAGCACGA 60.396 55.000 3.32 0.00 46.50 4.35
97 98 0.394488 CGAGACCTCACCAGCCTCTA 60.394 60.000 0.00 0.00 0.00 2.43
267 270 2.340328 TGTGCCTTCTAGCGCGAGA 61.340 57.895 16.75 16.75 46.35 4.04
288 291 2.436646 CAACGAGCGGCAAGGGAT 60.437 61.111 1.45 0.00 0.00 3.85
290 294 3.254024 AACGAGCGGCAAGGGATGT 62.254 57.895 1.45 0.00 0.00 3.06
303 307 2.093983 GATGTCGTTGACGCACGC 59.906 61.111 0.00 0.00 40.14 5.34
318 322 2.180769 CGCCGACGGTCAGAATCA 59.819 61.111 16.73 0.00 34.97 2.57
323 327 1.630148 CGACGGTCAGAATCAAGGTC 58.370 55.000 9.10 0.00 0.00 3.85
324 328 1.736032 CGACGGTCAGAATCAAGGTCC 60.736 57.143 9.10 0.00 0.00 4.46
330 334 1.825474 TCAGAATCAAGGTCCGAGGTC 59.175 52.381 0.00 0.00 0.00 3.85
334 338 1.605058 ATCAAGGTCCGAGGTCACCG 61.605 60.000 0.00 0.00 37.79 4.94
416 421 2.744709 CCGGTACAACCCCGCAAG 60.745 66.667 0.00 0.00 44.13 4.01
424 429 1.903404 AACCCCGCAAGCCTTCAAG 60.903 57.895 0.00 0.00 0.00 3.02
491 496 1.363080 GAGACGGGGAGCCGATAAC 59.637 63.158 0.00 0.00 36.94 1.89
670 676 5.860182 CACCTCAGTGCAATTTGATAGTTTG 59.140 40.000 0.00 0.00 37.14 2.93
671 677 5.769662 ACCTCAGTGCAATTTGATAGTTTGA 59.230 36.000 0.00 0.00 0.00 2.69
672 678 6.435277 ACCTCAGTGCAATTTGATAGTTTGAT 59.565 34.615 0.00 0.00 0.00 2.57
673 679 7.611467 ACCTCAGTGCAATTTGATAGTTTGATA 59.389 33.333 0.00 0.00 0.00 2.15
674 680 8.127327 CCTCAGTGCAATTTGATAGTTTGATAG 58.873 37.037 0.00 0.00 0.00 2.08
675 681 8.791327 TCAGTGCAATTTGATAGTTTGATAGA 57.209 30.769 0.00 0.00 0.00 1.98
676 682 9.399797 TCAGTGCAATTTGATAGTTTGATAGAT 57.600 29.630 0.00 0.00 0.00 1.98
707 714 5.105310 ACATCGCCACTAGTTTCATCTACTT 60.105 40.000 0.00 0.00 0.00 2.24
714 727 7.464710 GCCACTAGTTTCATCTACTTTGATTCG 60.465 40.741 0.00 0.00 0.00 3.34
722 735 4.617808 TCTACTTTGATTCGAGTCTCCG 57.382 45.455 9.50 0.23 0.00 4.63
723 736 2.656560 ACTTTGATTCGAGTCTCCGG 57.343 50.000 9.50 0.00 0.00 5.14
724 737 1.893801 ACTTTGATTCGAGTCTCCGGT 59.106 47.619 9.50 0.95 0.00 5.28
726 739 1.835494 TTGATTCGAGTCTCCGGTCT 58.165 50.000 9.50 0.00 0.00 3.85
728 741 2.286872 TGATTCGAGTCTCCGGTCTAC 58.713 52.381 9.50 0.00 0.00 2.59
731 744 0.617413 TCGAGTCTCCGGTCTACCTT 59.383 55.000 0.00 0.00 0.00 3.50
732 745 1.004044 TCGAGTCTCCGGTCTACCTTT 59.996 52.381 0.00 0.00 0.00 3.11
733 746 1.132643 CGAGTCTCCGGTCTACCTTTG 59.867 57.143 0.00 0.00 0.00 2.77
734 747 1.477295 GAGTCTCCGGTCTACCTTTGG 59.523 57.143 0.00 0.00 0.00 3.28
737 750 1.897802 TCTCCGGTCTACCTTTGGTTC 59.102 52.381 0.00 0.00 37.09 3.62
889 935 1.079503 GACGCTCTCCGCAGAATTTT 58.920 50.000 0.00 0.00 41.76 1.82
1053 1120 1.905843 CTCCTCCTCGCCGATCCAT 60.906 63.158 0.00 0.00 0.00 3.41
1221 1627 1.884235 CCAAGGTGAGAACTCGCTTT 58.116 50.000 13.73 10.32 39.49 3.51
1450 2075 3.323136 GCACTAGGATGCGCGTCG 61.323 66.667 22.62 12.03 35.50 5.12
1451 2076 2.655364 CACTAGGATGCGCGTCGG 60.655 66.667 22.62 16.71 0.00 4.79
1452 2077 4.570663 ACTAGGATGCGCGTCGGC 62.571 66.667 22.62 10.45 0.00 5.54
1453 2078 4.271816 CTAGGATGCGCGTCGGCT 62.272 66.667 22.62 16.96 36.88 5.52
1454 2079 4.266070 TAGGATGCGCGTCGGCTC 62.266 66.667 22.62 9.36 36.88 4.70
1477 2106 2.923426 ATCCGCACGCCATGATTCGT 62.923 55.000 0.00 0.00 39.79 3.85
1497 2126 4.467107 GTCGCCTCCTCCCTCCCT 62.467 72.222 0.00 0.00 0.00 4.20
1517 2146 2.268920 GCGCACCCTTCTGATCCA 59.731 61.111 0.30 0.00 0.00 3.41
1519 2148 1.153289 CGCACCCTTCTGATCCAGG 60.153 63.158 0.00 0.00 31.51 4.45
1552 2181 1.133790 GATTCACTCATGGTGCTTGGC 59.866 52.381 8.87 0.00 44.98 4.52
1557 2186 1.601419 CTCATGGTGCTTGGCTTGGG 61.601 60.000 0.00 0.00 0.00 4.12
1591 2220 0.661187 GTTGCATGCGTGTCCTTGTG 60.661 55.000 14.09 0.00 0.00 3.33
1662 2293 6.865726 GCTTCTCGCAATTTAGATCTCATCTA 59.134 38.462 0.00 0.00 38.53 1.98
1665 2296 8.622948 TCTCGCAATTTAGATCTCATCTAGTA 57.377 34.615 0.00 0.00 42.40 1.82
1666 2297 8.726068 TCTCGCAATTTAGATCTCATCTAGTAG 58.274 37.037 0.00 0.00 42.40 2.57
1667 2298 8.397575 TCGCAATTTAGATCTCATCTAGTAGT 57.602 34.615 0.00 0.00 42.40 2.73
1696 2327 5.295292 AGTTTGATCTGATCGTTTATGGCAG 59.705 40.000 12.65 0.00 0.00 4.85
1701 2332 6.479990 TGATCTGATCGTTTATGGCAGTTTAG 59.520 38.462 12.65 0.00 0.00 1.85
1714 2345 3.758554 GGCAGTTTAGAATTGGAAGCAGA 59.241 43.478 0.00 0.00 0.00 4.26
1768 2399 0.599558 TCAGCCAAGCACAAATCTGC 59.400 50.000 0.00 0.00 37.44 4.26
1790 2426 4.688413 GCTCGTTTTTAAATGCCCAATTGA 59.312 37.500 7.12 0.00 0.00 2.57
1791 2427 5.351189 GCTCGTTTTTAAATGCCCAATTGAT 59.649 36.000 7.12 0.00 0.00 2.57
1871 2507 3.350219 AGGTTGCACCGTTTATCAGAT 57.650 42.857 0.00 0.00 44.90 2.90
1875 2511 6.769512 AGGTTGCACCGTTTATCAGATATAT 58.230 36.000 0.00 0.00 44.90 0.86
1877 2513 7.173218 AGGTTGCACCGTTTATCAGATATATTG 59.827 37.037 0.00 0.00 44.90 1.90
1880 2516 8.445275 TGCACCGTTTATCAGATATATTGTTT 57.555 30.769 0.00 0.00 0.00 2.83
1881 2517 9.549078 TGCACCGTTTATCAGATATATTGTTTA 57.451 29.630 0.00 0.00 0.00 2.01
1954 2594 5.207354 TGATACACCGGGGTTTAGTACATA 58.793 41.667 18.35 0.00 0.00 2.29
2018 2658 6.811253 TTGTGTAGGATGGTTGAAACATAC 57.189 37.500 0.00 0.00 0.00 2.39
2019 2659 6.121776 TGTGTAGGATGGTTGAAACATACT 57.878 37.500 13.28 13.28 42.10 2.12
2020 2660 6.170506 TGTGTAGGATGGTTGAAACATACTC 58.829 40.000 11.98 4.72 38.77 2.59
2021 2661 5.585047 GTGTAGGATGGTTGAAACATACTCC 59.415 44.000 11.98 0.31 38.77 3.85
2022 2662 4.236527 AGGATGGTTGAAACATACTCCC 57.763 45.455 1.11 0.00 34.41 4.30
2023 2663 3.852578 AGGATGGTTGAAACATACTCCCT 59.147 43.478 1.11 0.00 34.41 4.20
2024 2664 4.080299 AGGATGGTTGAAACATACTCCCTC 60.080 45.833 1.11 0.00 34.41 4.30
2025 2665 3.713826 TGGTTGAAACATACTCCCTCC 57.286 47.619 0.00 0.00 0.00 4.30
2026 2666 2.027561 TGGTTGAAACATACTCCCTCCG 60.028 50.000 0.00 0.00 0.00 4.63
2027 2667 2.027469 GGTTGAAACATACTCCCTCCGT 60.027 50.000 0.00 0.00 0.00 4.69
2028 2668 3.558533 GGTTGAAACATACTCCCTCCGTT 60.559 47.826 0.00 0.00 0.00 4.44
2029 2669 3.604875 TGAAACATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2030 2670 2.235402 TGAAACATACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
2031 2671 2.249309 AACATACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2032 2672 3.393426 AACATACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
2033 2673 3.393426 ACATACTCCCTCCGTTCCTAA 57.607 47.619 0.00 0.00 0.00 2.69
2034 2674 3.716431 ACATACTCCCTCCGTTCCTAAA 58.284 45.455 0.00 0.00 0.00 1.85
2035 2675 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
2036 2676 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
2037 2677 6.082707 ACATACTCCCTCCGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
2038 2678 7.243824 ACATACTCCCTCCGTTCCTAAATATA 58.756 38.462 0.00 0.00 0.00 0.86
2039 2679 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
2040 2680 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2041 2681 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2042 2682 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2043 2683 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2044 2684 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2045 2685 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2046 2686 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2047 2687 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2048 2688 9.250624 CTCCGTTCCTAAATATAAGTCTTTCTG 57.749 37.037 0.00 0.00 0.00 3.02
2049 2689 8.202137 TCCGTTCCTAAATATAAGTCTTTCTGG 58.798 37.037 0.00 0.00 0.00 3.86
2050 2690 8.202137 CCGTTCCTAAATATAAGTCTTTCTGGA 58.798 37.037 0.00 0.00 0.00 3.86
2051 2691 9.250624 CGTTCCTAAATATAAGTCTTTCTGGAG 57.749 37.037 0.00 0.00 0.00 3.86
2064 2704 8.558973 AGTCTTTCTGGAGATTCTAACAAATG 57.441 34.615 0.00 0.00 0.00 2.32
2065 2705 8.378565 AGTCTTTCTGGAGATTCTAACAAATGA 58.621 33.333 0.00 0.00 0.00 2.57
2066 2706 8.447053 GTCTTTCTGGAGATTCTAACAAATGAC 58.553 37.037 0.00 2.72 0.00 3.06
2067 2707 8.378565 TCTTTCTGGAGATTCTAACAAATGACT 58.621 33.333 0.00 0.00 0.00 3.41
2068 2708 9.658799 CTTTCTGGAGATTCTAACAAATGACTA 57.341 33.333 0.00 0.00 0.00 2.59
2069 2709 9.436957 TTTCTGGAGATTCTAACAAATGACTAC 57.563 33.333 0.00 0.00 0.00 2.73
2070 2710 8.134202 TCTGGAGATTCTAACAAATGACTACA 57.866 34.615 0.00 0.00 0.00 2.74
2071 2711 8.762645 TCTGGAGATTCTAACAAATGACTACAT 58.237 33.333 0.00 0.00 38.50 2.29
2073 2713 9.817809 TGGAGATTCTAACAAATGACTACATAC 57.182 33.333 0.00 0.00 35.50 2.39
2074 2714 8.969267 GGAGATTCTAACAAATGACTACATACG 58.031 37.037 0.00 0.00 35.50 3.06
2075 2715 8.873215 AGATTCTAACAAATGACTACATACGG 57.127 34.615 0.00 0.00 35.50 4.02
2076 2716 8.692710 AGATTCTAACAAATGACTACATACGGA 58.307 33.333 0.00 0.00 35.50 4.69
2077 2717 8.873215 ATTCTAACAAATGACTACATACGGAG 57.127 34.615 0.00 0.00 35.50 4.63
2078 2718 6.270815 TCTAACAAATGACTACATACGGAGC 58.729 40.000 0.00 0.00 35.50 4.70
2079 2719 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
2080 2720 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
2081 2721 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
2082 2722 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
2083 2723 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
2084 2724 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
2085 2725 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
2086 2726 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
2087 2727 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2088 2728 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2089 2729 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2090 2730 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2091 2731 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2092 2732 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2093 2733 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2094 2734 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2095 2735 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2096 2736 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2097 2737 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2135 2775 5.403897 CATACATCCGTATGTTGTTGTCC 57.596 43.478 0.00 0.00 46.70 4.02
2136 2776 3.410631 ACATCCGTATGTTGTTGTCCA 57.589 42.857 0.00 0.00 44.07 4.02
2137 2777 3.950397 ACATCCGTATGTTGTTGTCCAT 58.050 40.909 0.00 0.00 44.07 3.41
2138 2778 4.331968 ACATCCGTATGTTGTTGTCCATT 58.668 39.130 0.00 0.00 44.07 3.16
2139 2779 4.764823 ACATCCGTATGTTGTTGTCCATTT 59.235 37.500 0.00 0.00 44.07 2.32
2140 2780 4.757799 TCCGTATGTTGTTGTCCATTTG 57.242 40.909 0.00 0.00 0.00 2.32
2141 2781 4.390264 TCCGTATGTTGTTGTCCATTTGA 58.610 39.130 0.00 0.00 0.00 2.69
2142 2782 4.822350 TCCGTATGTTGTTGTCCATTTGAA 59.178 37.500 0.00 0.00 0.00 2.69
2143 2783 5.299531 TCCGTATGTTGTTGTCCATTTGAAA 59.700 36.000 0.00 0.00 0.00 2.69
2144 2784 6.015856 TCCGTATGTTGTTGTCCATTTGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
2145 2785 6.089283 CCGTATGTTGTTGTCCATTTGAAATG 59.911 38.462 10.84 10.84 0.00 2.32
2146 2786 6.089283 CGTATGTTGTTGTCCATTTGAAATGG 59.911 38.462 26.94 26.94 40.48 3.16
2147 2787 4.125703 TGTTGTTGTCCATTTGAAATGGC 58.874 39.130 27.78 22.47 39.01 4.40
2148 2788 4.141756 TGTTGTTGTCCATTTGAAATGGCT 60.142 37.500 27.78 0.00 39.01 4.75
2149 2789 5.069648 TGTTGTTGTCCATTTGAAATGGCTA 59.930 36.000 27.78 17.52 39.01 3.93
2150 2790 5.798125 TGTTGTCCATTTGAAATGGCTAA 57.202 34.783 27.78 21.41 39.01 3.09
2151 2791 6.166984 TGTTGTCCATTTGAAATGGCTAAA 57.833 33.333 27.78 18.97 39.01 1.85
2152 2792 6.586344 TGTTGTCCATTTGAAATGGCTAAAA 58.414 32.000 27.78 17.97 39.01 1.52
2153 2793 7.050377 TGTTGTCCATTTGAAATGGCTAAAAA 58.950 30.769 27.78 15.47 39.01 1.94
2154 2794 7.226325 TGTTGTCCATTTGAAATGGCTAAAAAG 59.774 33.333 27.78 6.20 39.01 2.27
2155 2795 7.060383 TGTCCATTTGAAATGGCTAAAAAGA 57.940 32.000 27.78 9.04 39.01 2.52
2156 2796 6.928492 TGTCCATTTGAAATGGCTAAAAAGAC 59.072 34.615 27.78 19.05 39.01 3.01
2157 2797 7.154656 GTCCATTTGAAATGGCTAAAAAGACT 58.845 34.615 27.78 0.00 39.01 3.24
2158 2798 7.657354 GTCCATTTGAAATGGCTAAAAAGACTT 59.343 33.333 27.78 0.00 39.01 3.01
2159 2799 8.865090 TCCATTTGAAATGGCTAAAAAGACTTA 58.135 29.630 27.78 6.99 39.01 2.24
2160 2800 8.925700 CCATTTGAAATGGCTAAAAAGACTTAC 58.074 33.333 22.59 0.00 31.75 2.34
2161 2801 9.474920 CATTTGAAATGGCTAAAAAGACTTACA 57.525 29.630 9.98 0.00 0.00 2.41
2168 2808 9.528489 AATGGCTAAAAAGACTTACATTTAGGA 57.472 29.630 15.06 0.00 36.39 2.94
2169 2809 8.927675 TGGCTAAAAAGACTTACATTTAGGAA 57.072 30.769 15.06 0.00 36.39 3.36
2170 2810 8.789762 TGGCTAAAAAGACTTACATTTAGGAAC 58.210 33.333 15.06 4.13 36.39 3.62
2171 2811 7.961283 GGCTAAAAAGACTTACATTTAGGAACG 59.039 37.037 15.06 0.00 36.39 3.95
2172 2812 7.961283 GCTAAAAAGACTTACATTTAGGAACGG 59.039 37.037 15.06 0.00 36.39 4.44
2173 2813 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
2174 2814 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
2175 2815 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2176 2816 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2177 2817 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2178 2818 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2179 2819 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
2180 2820 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
2186 2826 1.206610 GGAACGGAGGGAGTAGTTTCC 59.793 57.143 0.00 0.00 36.46 3.13
2205 2845 4.916983 TCCAAAACCAAACTGATGAGTG 57.083 40.909 0.00 0.00 30.61 3.51
2249 2889 3.365364 GCTTCAACTGACATTGTACTGGC 60.365 47.826 0.00 0.00 0.00 4.85
2325 2965 3.969899 TCTACGAACAGCTATCTGCATG 58.030 45.455 0.00 0.00 44.10 4.06
2328 2968 4.327982 ACGAACAGCTATCTGCATGTAT 57.672 40.909 0.00 0.00 44.10 2.29
2495 3142 3.741388 GCCGAATACCATAGTTGACAGCT 60.741 47.826 0.00 0.00 0.00 4.24
2747 3396 5.580297 GGAGAAGATTGAGGATGAATATCGC 59.420 44.000 0.00 0.00 33.98 4.58
2770 3419 6.019398 CGCGTGAACATGTAAGGACAATATAA 60.019 38.462 0.00 0.00 39.59 0.98
2784 3433 5.756347 GGACAATATAATAGGTGTTGTCGCA 59.244 40.000 9.56 0.00 45.80 5.10
2790 3439 6.903883 ATAATAGGTGTTGTCGCACTTTAG 57.096 37.500 0.00 0.00 39.21 1.85
2888 3537 2.009774 CAAAGGCCAGATAGGAACACG 58.990 52.381 5.01 0.00 41.22 4.49
2915 3564 4.804261 GCCTACCAAGGTGGATATCATGTC 60.804 50.000 4.83 0.00 45.64 3.06
2919 3568 3.323691 CCAAGGTGGATATCATGTCGGTA 59.676 47.826 4.83 0.00 40.96 4.02
2952 3601 5.986135 CAGTATGCTGGAGTAAGTTCATACC 59.014 44.000 2.35 0.00 37.84 2.73
2971 3620 0.676466 CGCCTGTTCATGCTTACCCA 60.676 55.000 0.00 0.00 0.00 4.51
3000 3650 4.238761 ACATGTATGATCGGGACTAACG 57.761 45.455 0.00 0.00 0.00 3.18
3099 3749 4.256920 AGTTTCACAAGGATGAGGATTCG 58.743 43.478 0.00 0.00 0.00 3.34
3176 3826 8.816144 CAACTTTGCTTGTTGTGTTGTTAATAT 58.184 29.630 8.24 0.00 39.69 1.28
3225 3879 9.616156 TGTACCTAATTTTTGTGTTCTGTCTTA 57.384 29.630 0.00 0.00 0.00 2.10
3400 4054 4.491676 TGATGTTCGCTTTGAGGTACTAC 58.508 43.478 0.00 0.00 41.55 2.73
3405 4059 5.235616 TGTTCGCTTTGAGGTACTACTTTTG 59.764 40.000 0.00 0.00 41.55 2.44
3467 4121 9.905713 ACCTTTAATGTTAGATCTGCTTTATGA 57.094 29.630 5.18 0.38 0.00 2.15
3730 4384 0.674895 AAGCTTGTCCACGGAGATGC 60.675 55.000 11.79 11.79 38.33 3.91
3744 4398 1.378514 GATGCTTTCCGCCCTCCAA 60.379 57.895 0.00 0.00 38.05 3.53
3830 4484 5.810587 GGTTACGATGATCTTTGCTGTTCTA 59.189 40.000 0.00 0.00 0.00 2.10
4235 4889 0.687354 ACATGAACCCGCTCTTCACT 59.313 50.000 0.00 0.00 30.46 3.41
4460 5114 1.216930 TCATACCTCACCTCGGGATCA 59.783 52.381 0.00 0.00 0.00 2.92
4469 5123 3.905705 CTCGGGATCATCGGCGCTC 62.906 68.421 7.64 0.00 0.00 5.03
4692 5346 0.108709 GCAGGCAGAGACAGAGACAG 60.109 60.000 0.00 0.00 0.00 3.51
4825 5479 9.088987 ACATTTTGGGATTAGTTTATGAACTGT 57.911 29.630 12.85 1.88 45.46 3.55
4919 5573 7.438459 GGTAGAATACAATACACTGTGATGGAC 59.562 40.741 15.86 4.54 45.43 4.02
5000 5654 2.816087 CCTGTAATTCTTGTGCTGCTGT 59.184 45.455 0.00 0.00 0.00 4.40
5110 5765 6.418101 AGATTTACAAGTGGCTCACATACAT 58.582 36.000 7.86 0.00 36.74 2.29
5128 5783 1.328680 CATGGCATGACAACTACTCGC 59.671 52.381 22.91 0.00 0.00 5.03
5161 5816 3.446968 TGCCCTAGTTTCTTAGCACCTA 58.553 45.455 0.00 0.00 0.00 3.08
5163 5818 3.737355 GCCCTAGTTTCTTAGCACCTACG 60.737 52.174 0.00 0.00 0.00 3.51
5165 5820 3.446516 CCTAGTTTCTTAGCACCTACGGT 59.553 47.826 0.00 0.00 35.62 4.83
5176 5831 1.058284 ACCTACGGTAACCCAAAGCA 58.942 50.000 0.00 0.00 32.11 3.91
5183 5838 2.735151 GGTAACCCAAAGCATAGCCTT 58.265 47.619 0.00 0.00 0.00 4.35
5217 5872 1.373590 TAAGAAGAATTGGCGGCGGC 61.374 55.000 27.76 27.76 38.90 6.53
5239 5894 2.360801 GCACTTGTGGTGTGGTAAACAT 59.639 45.455 2.81 0.00 46.86 2.71
5240 5895 3.795150 GCACTTGTGGTGTGGTAAACATG 60.795 47.826 2.81 0.00 46.86 3.21
5246 5901 4.038522 TGTGGTGTGGTAAACATGGAATTG 59.961 41.667 0.00 0.00 41.97 2.32
5250 5963 6.052360 GGTGTGGTAAACATGGAATTGTTTT 58.948 36.000 7.75 0.00 45.14 2.43
5266 5979 9.406828 GGAATTGTTTTAAATTGTCTAGACCAC 57.593 33.333 20.11 0.00 29.89 4.16
5267 5980 9.959749 GAATTGTTTTAAATTGTCTAGACCACA 57.040 29.630 20.11 4.76 29.89 4.17
5269 5982 9.965824 ATTGTTTTAAATTGTCTAGACCACAAG 57.034 29.630 20.11 0.00 37.18 3.16
5270 5983 8.740123 TGTTTTAAATTGTCTAGACCACAAGA 57.260 30.769 20.11 0.00 37.18 3.02
5271 5984 9.179909 TGTTTTAAATTGTCTAGACCACAAGAA 57.820 29.630 20.11 6.96 37.18 2.52
5277 5990 6.877611 TTGTCTAGACCACAAGAAAATTCC 57.122 37.500 20.11 0.00 30.16 3.01
5278 5991 5.935945 TGTCTAGACCACAAGAAAATTCCA 58.064 37.500 20.11 0.00 0.00 3.53
5279 5992 6.542821 TGTCTAGACCACAAGAAAATTCCAT 58.457 36.000 20.11 0.00 0.00 3.41
5280 5993 6.655003 TGTCTAGACCACAAGAAAATTCCATC 59.345 38.462 20.11 0.00 0.00 3.51
5281 5994 6.655003 GTCTAGACCACAAGAAAATTCCATCA 59.345 38.462 12.13 0.00 0.00 3.07
5282 5995 5.972107 AGACCACAAGAAAATTCCATCAG 57.028 39.130 0.00 0.00 0.00 2.90
5283 5996 5.388654 AGACCACAAGAAAATTCCATCAGT 58.611 37.500 0.00 0.00 0.00 3.41
5284 5997 5.835280 AGACCACAAGAAAATTCCATCAGTT 59.165 36.000 0.00 0.00 0.00 3.16
5285 5998 6.324770 AGACCACAAGAAAATTCCATCAGTTT 59.675 34.615 0.00 0.00 0.00 2.66
5286 5999 6.282930 ACCACAAGAAAATTCCATCAGTTTG 58.717 36.000 0.00 0.00 0.00 2.93
5287 6000 5.178067 CCACAAGAAAATTCCATCAGTTTGC 59.822 40.000 0.00 0.00 0.00 3.68
5288 6001 5.754406 CACAAGAAAATTCCATCAGTTTGCA 59.246 36.000 0.00 0.00 0.00 4.08
5289 6002 5.754890 ACAAGAAAATTCCATCAGTTTGCAC 59.245 36.000 0.00 0.00 0.00 4.57
5290 6003 5.796424 AGAAAATTCCATCAGTTTGCACT 57.204 34.783 0.00 0.00 0.00 4.40
5373 6106 2.032620 TCGAAGGATCCCTCTAAGTGC 58.967 52.381 8.55 0.00 30.89 4.40
5374 6107 1.069358 CGAAGGATCCCTCTAAGTGCC 59.931 57.143 8.55 0.00 30.89 5.01
5375 6108 2.119495 GAAGGATCCCTCTAAGTGCCA 58.881 52.381 8.55 0.00 30.89 4.92
5376 6109 2.270434 AGGATCCCTCTAAGTGCCAA 57.730 50.000 8.55 0.00 0.00 4.52
5377 6110 2.122768 AGGATCCCTCTAAGTGCCAAG 58.877 52.381 8.55 0.00 0.00 3.61
5378 6111 1.840635 GGATCCCTCTAAGTGCCAAGT 59.159 52.381 0.00 0.00 0.00 3.16
5379 6112 2.239907 GGATCCCTCTAAGTGCCAAGTT 59.760 50.000 0.00 0.00 0.00 2.66
5380 6113 3.308473 GGATCCCTCTAAGTGCCAAGTTT 60.308 47.826 0.00 0.00 0.00 2.66
5381 6114 4.080526 GGATCCCTCTAAGTGCCAAGTTTA 60.081 45.833 0.00 0.00 0.00 2.01
5382 6115 4.553330 TCCCTCTAAGTGCCAAGTTTAG 57.447 45.455 0.00 0.00 0.00 1.85
5383 6116 3.263425 TCCCTCTAAGTGCCAAGTTTAGG 59.737 47.826 0.00 0.00 0.00 2.69
5384 6117 3.009143 CCCTCTAAGTGCCAAGTTTAGGT 59.991 47.826 0.00 0.00 0.00 3.08
5385 6118 4.003648 CCTCTAAGTGCCAAGTTTAGGTG 58.996 47.826 0.00 0.00 0.00 4.00
5386 6119 4.505039 CCTCTAAGTGCCAAGTTTAGGTGT 60.505 45.833 0.00 0.00 0.00 4.16
5387 6120 4.638304 TCTAAGTGCCAAGTTTAGGTGTC 58.362 43.478 0.00 0.00 0.00 3.67
5388 6121 3.577805 AAGTGCCAAGTTTAGGTGTCT 57.422 42.857 0.00 0.00 0.00 3.41
5389 6122 4.699925 AAGTGCCAAGTTTAGGTGTCTA 57.300 40.909 0.00 0.00 0.00 2.59
5390 6123 4.910458 AGTGCCAAGTTTAGGTGTCTAT 57.090 40.909 0.00 0.00 0.00 1.98
5391 6124 4.579869 AGTGCCAAGTTTAGGTGTCTATG 58.420 43.478 0.00 0.00 0.00 2.23
5392 6125 4.041691 AGTGCCAAGTTTAGGTGTCTATGT 59.958 41.667 0.00 0.00 0.00 2.29
5393 6126 4.154195 GTGCCAAGTTTAGGTGTCTATGTG 59.846 45.833 0.00 0.00 0.00 3.21
5394 6127 3.127030 GCCAAGTTTAGGTGTCTATGTGC 59.873 47.826 0.00 0.00 0.00 4.57
5395 6128 4.323417 CCAAGTTTAGGTGTCTATGTGCA 58.677 43.478 0.00 0.00 0.00 4.57
5396 6129 4.154195 CCAAGTTTAGGTGTCTATGTGCAC 59.846 45.833 10.75 10.75 35.07 4.57
5399 6132 5.373222 AGTTTAGGTGTCTATGTGCACAAA 58.627 37.500 25.72 9.81 37.35 2.83
5419 6152 7.702348 GCACAAACTCAAACTTATTGAAGAAGT 59.298 33.333 0.00 0.00 38.81 3.01
5422 6155 7.881775 AACTCAAACTTATTGAAGAAGTGGT 57.118 32.000 5.92 1.41 37.22 4.16
5424 6157 7.054124 ACTCAAACTTATTGAAGAAGTGGTGA 58.946 34.615 5.92 11.39 37.22 4.02
5465 6199 3.827505 TGCAAAGAGGGCAAAGACT 57.172 47.368 0.00 0.00 38.54 3.24
5482 6216 3.778265 AGACTACAATTTGCCCAACCAT 58.222 40.909 0.00 0.00 0.00 3.55
5519 6253 0.036388 GCAGTCCAAATCCGACCTCA 60.036 55.000 0.00 0.00 0.00 3.86
5531 6265 0.716108 CGACCTCACAATGCGAAGAC 59.284 55.000 0.00 0.00 0.00 3.01
5533 6267 2.417719 GACCTCACAATGCGAAGACTT 58.582 47.619 0.00 0.00 0.00 3.01
5538 6272 4.378459 CCTCACAATGCGAAGACTTTAACC 60.378 45.833 0.00 0.00 0.00 2.85
5545 6279 4.200874 TGCGAAGACTTTAACCTTTGGAA 58.799 39.130 0.00 0.00 0.00 3.53
5566 6300 4.118093 AGGGTTCAAACTTTTCAAACCG 57.882 40.909 8.44 0.00 40.22 4.44
5590 6325 1.208776 AGTCCATGGGGTAGCGTAAAC 59.791 52.381 13.02 0.00 34.93 2.01
5804 6543 2.351777 CGGAGCAATATCCTCGGGA 58.648 57.895 0.00 0.00 37.20 5.14
5806 6545 0.321996 GGAGCAATATCCTCGGGACC 59.678 60.000 0.00 0.00 36.35 4.46
5807 6546 0.321996 GAGCAATATCCTCGGGACCC 59.678 60.000 0.00 0.00 32.98 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.877012 GTGATGCTACAAGAGAATGAAGGAA 59.123 40.000 0.00 0.00 0.00 3.36
1 2 5.046376 TGTGATGCTACAAGAGAATGAAGGA 60.046 40.000 0.00 0.00 0.00 3.36
2 3 5.064452 GTGTGATGCTACAAGAGAATGAAGG 59.936 44.000 0.00 0.00 31.36 3.46
3 4 5.064452 GGTGTGATGCTACAAGAGAATGAAG 59.936 44.000 0.00 0.00 31.36 3.02
4 5 4.937620 GGTGTGATGCTACAAGAGAATGAA 59.062 41.667 0.00 0.00 31.36 2.57
5 6 4.223700 AGGTGTGATGCTACAAGAGAATGA 59.776 41.667 0.00 0.00 31.36 2.57
6 7 4.511527 AGGTGTGATGCTACAAGAGAATG 58.488 43.478 0.00 0.00 31.36 2.67
7 8 4.679106 CGAGGTGTGATGCTACAAGAGAAT 60.679 45.833 0.00 0.00 31.36 2.40
37 38 2.486918 AGCAACGGTGTGGTTTAGTAC 58.513 47.619 0.66 0.00 0.00 2.73
53 54 3.374764 TCTAGGCCATCAGACTTAGCAA 58.625 45.455 5.01 0.00 0.00 3.91
80 81 0.324830 GGTAGAGGCTGGTGAGGTCT 60.325 60.000 0.00 0.00 0.00 3.85
124 125 0.819259 GCTCTGTGGTGCCTTGTTGA 60.819 55.000 0.00 0.00 0.00 3.18
126 127 1.529244 GGCTCTGTGGTGCCTTGTT 60.529 57.895 0.00 0.00 45.53 2.83
146 147 2.797719 GTTATTGTTTTTGTGCGGGTGG 59.202 45.455 0.00 0.00 0.00 4.61
148 149 2.431057 TGGTTATTGTTTTTGTGCGGGT 59.569 40.909 0.00 0.00 0.00 5.28
151 152 3.059935 GCCTTGGTTATTGTTTTTGTGCG 60.060 43.478 0.00 0.00 0.00 5.34
201 202 0.106967 GACTCCTCCAATTCCAGGCC 60.107 60.000 0.00 0.00 0.00 5.19
231 234 0.803768 CACGGATCTGACTTGCCTCG 60.804 60.000 9.00 0.00 0.00 4.63
233 236 0.036952 CACACGGATCTGACTTGCCT 60.037 55.000 9.00 0.00 0.00 4.75
240 243 1.751351 CTAGAAGGCACACGGATCTGA 59.249 52.381 9.00 0.00 0.00 3.27
267 270 3.357079 CTTGCCGCTCGTTGCCTT 61.357 61.111 0.00 0.00 38.78 4.35
303 307 0.246635 ACCTTGATTCTGACCGTCGG 59.753 55.000 10.48 10.48 0.00 4.79
318 322 2.203596 ACGGTGACCTCGGACCTT 60.204 61.111 0.00 0.00 0.00 3.50
334 338 3.208884 ATCGTATCTGGCCGGCGAC 62.209 63.158 22.54 8.26 34.36 5.19
342 346 1.006102 GCCCGGACATCGTATCTGG 60.006 63.158 0.73 4.73 41.66 3.86
403 407 1.302993 GAAGGCTTGCGGGGTTGTA 60.303 57.895 3.46 0.00 0.00 2.41
416 421 4.722700 TGGCCCGCTCTTGAAGGC 62.723 66.667 0.00 0.00 44.99 4.35
637 643 1.168714 GCACTGAGGTGTTGGGATTC 58.831 55.000 0.00 0.00 44.65 2.52
667 673 7.014326 AGTGGCGATGTTAGTCTATCTATCAAA 59.986 37.037 0.00 0.00 33.70 2.69
670 676 6.503589 AGTGGCGATGTTAGTCTATCTATC 57.496 41.667 0.00 0.00 0.00 2.08
671 677 7.169591 ACTAGTGGCGATGTTAGTCTATCTAT 58.830 38.462 0.00 0.00 0.00 1.98
672 678 6.531923 ACTAGTGGCGATGTTAGTCTATCTA 58.468 40.000 0.00 0.00 0.00 1.98
673 679 5.378332 ACTAGTGGCGATGTTAGTCTATCT 58.622 41.667 0.00 0.00 0.00 1.98
674 680 5.692613 ACTAGTGGCGATGTTAGTCTATC 57.307 43.478 0.00 0.00 0.00 2.08
675 681 6.096423 TGAAACTAGTGGCGATGTTAGTCTAT 59.904 38.462 0.00 0.00 0.00 1.98
676 682 5.416639 TGAAACTAGTGGCGATGTTAGTCTA 59.583 40.000 0.00 0.00 0.00 2.59
677 683 4.219944 TGAAACTAGTGGCGATGTTAGTCT 59.780 41.667 0.00 0.00 0.00 3.24
678 684 4.491676 TGAAACTAGTGGCGATGTTAGTC 58.508 43.478 0.00 0.00 0.00 2.59
679 685 4.530710 TGAAACTAGTGGCGATGTTAGT 57.469 40.909 0.00 0.00 0.00 2.24
680 686 5.352284 AGATGAAACTAGTGGCGATGTTAG 58.648 41.667 0.00 0.00 0.00 2.34
681 687 5.339008 AGATGAAACTAGTGGCGATGTTA 57.661 39.130 0.00 0.00 0.00 2.41
687 694 5.168569 TCAAAGTAGATGAAACTAGTGGCG 58.831 41.667 0.00 0.00 0.00 5.69
707 714 1.835494 AGACCGGAGACTCGAATCAA 58.165 50.000 9.46 0.00 0.00 2.57
714 727 1.477295 CCAAAGGTAGACCGGAGACTC 59.523 57.143 9.46 0.00 42.08 3.36
722 735 1.675116 GCCTCGAACCAAAGGTAGACC 60.675 57.143 0.00 0.00 33.12 3.85
723 736 1.675116 GGCCTCGAACCAAAGGTAGAC 60.675 57.143 0.00 0.00 33.12 2.59
724 737 0.611714 GGCCTCGAACCAAAGGTAGA 59.388 55.000 0.00 0.00 33.12 2.59
726 739 0.323629 CAGGCCTCGAACCAAAGGTA 59.676 55.000 0.00 0.00 33.12 3.08
728 741 2.335712 GCAGGCCTCGAACCAAAGG 61.336 63.158 0.00 0.00 35.65 3.11
731 744 3.249189 AGGCAGGCCTCGAACCAA 61.249 61.111 0.00 0.00 44.43 3.67
732 745 4.020617 CAGGCAGGCCTCGAACCA 62.021 66.667 10.50 0.00 46.28 3.67
733 746 4.785453 CCAGGCAGGCCTCGAACC 62.785 72.222 10.50 1.68 46.28 3.62
928 974 0.748729 CAGCGCCGGGGGTTTTATTA 60.749 55.000 21.84 0.00 0.00 0.98
929 975 2.049767 CAGCGCCGGGGGTTTTATT 61.050 57.895 21.84 0.00 0.00 1.40
1053 1120 3.399181 GGTGGCGTGGATCTGGGA 61.399 66.667 0.00 0.00 0.00 4.37
1202 1608 1.801178 GAAAGCGAGTTCTCACCTTGG 59.199 52.381 0.00 0.00 0.00 3.61
1390 2015 2.649331 AGGTAATTGGACTGTCGACG 57.351 50.000 11.62 8.41 0.00 5.12
1393 2018 1.659098 GCGAAGGTAATTGGACTGTCG 59.341 52.381 1.07 0.00 0.00 4.35
1455 2080 3.832237 ATCATGGCGTGCGGATCCC 62.832 63.158 6.06 0.00 0.00 3.85
1457 2082 1.571460 GAATCATGGCGTGCGGATC 59.429 57.895 0.65 0.00 0.00 3.36
1497 2126 4.393155 ATCAGAAGGGTGCGCGCA 62.393 61.111 33.09 33.09 0.00 6.09
1504 2133 0.252284 ACGTCCTGGATCAGAAGGGT 60.252 55.000 0.00 0.00 34.08 4.34
1517 2146 0.382515 GAATCTAGCGAGCACGTCCT 59.617 55.000 5.23 0.00 41.98 3.85
1519 2148 1.192793 GTGAATCTAGCGAGCACGTC 58.807 55.000 5.23 0.00 41.98 4.34
1552 2181 3.486383 ACATAACCAACTGTGACCCAAG 58.514 45.455 0.00 0.00 0.00 3.61
1557 2186 3.980646 TGCAACATAACCAACTGTGAC 57.019 42.857 0.00 0.00 0.00 3.67
1662 2293 8.057536 ACGATCAGATCAAACTAAGAACTACT 57.942 34.615 11.12 0.00 0.00 2.57
1665 2296 9.877178 ATAAACGATCAGATCAAACTAAGAACT 57.123 29.630 11.12 0.00 0.00 3.01
1666 2297 9.907576 CATAAACGATCAGATCAAACTAAGAAC 57.092 33.333 11.12 0.00 0.00 3.01
1667 2298 9.098355 CCATAAACGATCAGATCAAACTAAGAA 57.902 33.333 11.12 0.00 0.00 2.52
1696 2327 3.748298 GCGTCTGCTTCCAATTCTAAAC 58.252 45.455 0.00 0.00 38.39 2.01
1714 2345 5.919300 CACTCAATCAGTTGCCATAAGCGT 61.919 45.833 0.00 0.00 37.55 5.07
1768 2399 6.966435 ATCAATTGGGCATTTAAAAACGAG 57.034 33.333 5.42 0.00 0.00 4.18
1854 2490 8.445275 AACAATATATCTGATAAACGGTGCAA 57.555 30.769 0.81 0.00 0.00 4.08
1923 2559 1.529226 CCCGGTGTATCAAACAAGCA 58.471 50.000 0.00 0.00 40.63 3.91
1924 2560 0.808755 CCCCGGTGTATCAAACAAGC 59.191 55.000 0.00 0.00 40.63 4.01
1925 2561 2.194201 ACCCCGGTGTATCAAACAAG 57.806 50.000 0.00 0.00 40.63 3.16
1926 2562 2.660670 AACCCCGGTGTATCAAACAA 57.339 45.000 0.00 0.00 40.63 2.83
2018 2658 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2019 2659 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2020 2660 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2021 2661 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2022 2662 9.250624 CAGAAAGACTTATATTTAGGAACGGAG 57.749 37.037 0.00 0.00 0.00 4.63
2023 2663 8.202137 CCAGAAAGACTTATATTTAGGAACGGA 58.798 37.037 0.00 0.00 0.00 4.69
2024 2664 8.202137 TCCAGAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
2025 2665 9.250624 CTCCAGAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 28.49 3.95
2038 2678 9.007901 CATTTGTTAGAATCTCCAGAAAGACTT 57.992 33.333 0.00 0.00 0.00 3.01
2039 2679 8.378565 TCATTTGTTAGAATCTCCAGAAAGACT 58.621 33.333 0.00 0.00 0.00 3.24
2040 2680 8.447053 GTCATTTGTTAGAATCTCCAGAAAGAC 58.553 37.037 0.00 0.00 0.00 3.01
2041 2681 8.378565 AGTCATTTGTTAGAATCTCCAGAAAGA 58.621 33.333 0.00 0.00 0.00 2.52
2042 2682 8.558973 AGTCATTTGTTAGAATCTCCAGAAAG 57.441 34.615 0.00 0.00 0.00 2.62
2043 2683 9.436957 GTAGTCATTTGTTAGAATCTCCAGAAA 57.563 33.333 0.00 0.00 0.00 2.52
2044 2684 8.593679 TGTAGTCATTTGTTAGAATCTCCAGAA 58.406 33.333 0.00 0.00 0.00 3.02
2045 2685 8.134202 TGTAGTCATTTGTTAGAATCTCCAGA 57.866 34.615 0.00 0.00 0.00 3.86
2046 2686 8.954950 ATGTAGTCATTTGTTAGAATCTCCAG 57.045 34.615 0.00 0.00 0.00 3.86
2047 2687 9.817809 GTATGTAGTCATTTGTTAGAATCTCCA 57.182 33.333 0.00 0.00 35.70 3.86
2048 2688 8.969267 CGTATGTAGTCATTTGTTAGAATCTCC 58.031 37.037 0.00 0.00 35.70 3.71
2049 2689 8.969267 CCGTATGTAGTCATTTGTTAGAATCTC 58.031 37.037 0.00 0.00 35.70 2.75
2050 2690 8.692710 TCCGTATGTAGTCATTTGTTAGAATCT 58.307 33.333 0.00 0.00 35.70 2.40
2051 2691 8.867112 TCCGTATGTAGTCATTTGTTAGAATC 57.133 34.615 0.00 0.00 35.70 2.52
2052 2692 7.438459 GCTCCGTATGTAGTCATTTGTTAGAAT 59.562 37.037 0.00 0.00 35.70 2.40
2053 2693 6.755141 GCTCCGTATGTAGTCATTTGTTAGAA 59.245 38.462 0.00 0.00 35.70 2.10
2054 2694 6.127563 TGCTCCGTATGTAGTCATTTGTTAGA 60.128 38.462 0.00 0.00 35.70 2.10
2055 2695 6.040247 TGCTCCGTATGTAGTCATTTGTTAG 58.960 40.000 0.00 0.00 35.70 2.34
2056 2696 5.968254 TGCTCCGTATGTAGTCATTTGTTA 58.032 37.500 0.00 0.00 35.70 2.41
2057 2697 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
2058 2698 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
2059 2699 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
2060 2700 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
2061 2701 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
2062 2702 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
2063 2703 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2064 2704 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2065 2705 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2066 2706 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2067 2707 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2068 2708 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2069 2709 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2070 2710 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2071 2711 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2072 2712 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2073 2713 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2074 2714 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2075 2715 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2114 2754 5.092554 TGGACAACAACATACGGATGTAT 57.907 39.130 15.10 2.23 45.93 2.29
2115 2755 4.538746 TGGACAACAACATACGGATGTA 57.461 40.909 15.10 0.00 45.93 2.29
2117 2757 4.963276 AATGGACAACAACATACGGATG 57.037 40.909 5.94 5.94 39.16 3.51
2118 2758 5.007034 TCAAATGGACAACAACATACGGAT 58.993 37.500 0.00 0.00 0.00 4.18
2119 2759 4.390264 TCAAATGGACAACAACATACGGA 58.610 39.130 0.00 0.00 0.00 4.69
2120 2760 4.757799 TCAAATGGACAACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
2121 2761 6.089283 CCATTTCAAATGGACAACAACATACG 59.911 38.462 23.10 0.00 41.64 3.06
2122 2762 6.128580 GCCATTTCAAATGGACAACAACATAC 60.129 38.462 30.24 6.32 41.64 2.39
2123 2763 5.931146 GCCATTTCAAATGGACAACAACATA 59.069 36.000 30.24 0.00 41.64 2.29
2124 2764 4.756135 GCCATTTCAAATGGACAACAACAT 59.244 37.500 30.24 0.00 41.64 2.71
2125 2765 4.125703 GCCATTTCAAATGGACAACAACA 58.874 39.130 30.24 0.00 41.64 3.33
2126 2766 4.379652 AGCCATTTCAAATGGACAACAAC 58.620 39.130 30.24 12.12 41.64 3.32
2127 2767 4.686191 AGCCATTTCAAATGGACAACAA 57.314 36.364 30.24 0.00 41.64 2.83
2128 2768 5.798125 TTAGCCATTTCAAATGGACAACA 57.202 34.783 30.24 8.57 41.64 3.33
2129 2769 7.440856 TCTTTTTAGCCATTTCAAATGGACAAC 59.559 33.333 30.24 13.82 41.64 3.32
2130 2770 7.440856 GTCTTTTTAGCCATTTCAAATGGACAA 59.559 33.333 30.24 19.39 41.64 3.18
2131 2771 6.928492 GTCTTTTTAGCCATTTCAAATGGACA 59.072 34.615 30.24 14.93 41.64 4.02
2132 2772 7.154656 AGTCTTTTTAGCCATTTCAAATGGAC 58.845 34.615 30.24 20.75 41.64 4.02
2133 2773 7.301868 AGTCTTTTTAGCCATTTCAAATGGA 57.698 32.000 30.24 9.77 41.64 3.41
2134 2774 7.967890 AAGTCTTTTTAGCCATTTCAAATGG 57.032 32.000 23.16 23.16 41.99 3.16
2135 2775 9.474920 TGTAAGTCTTTTTAGCCATTTCAAATG 57.525 29.630 2.80 2.80 0.00 2.32
2142 2782 9.528489 TCCTAAATGTAAGTCTTTTTAGCCATT 57.472 29.630 8.75 0.00 0.00 3.16
2143 2783 9.528489 TTCCTAAATGTAAGTCTTTTTAGCCAT 57.472 29.630 8.75 0.00 0.00 4.40
2144 2784 8.789762 GTTCCTAAATGTAAGTCTTTTTAGCCA 58.210 33.333 8.75 0.00 0.00 4.75
2145 2785 7.961283 CGTTCCTAAATGTAAGTCTTTTTAGCC 59.039 37.037 8.75 1.70 0.00 3.93
2146 2786 7.961283 CCGTTCCTAAATGTAAGTCTTTTTAGC 59.039 37.037 8.75 0.00 0.00 3.09
2147 2787 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
2148 2788 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
2149 2789 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
2150 2790 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
2151 2791 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2152 2792 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2153 2793 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2154 2794 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2155 2795 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
2156 2796 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
2157 2797 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2158 2798 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2159 2799 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2160 2800 3.705072 ACTACTCCCTCCGTTCCTAAATG 59.295 47.826 0.00 0.00 0.00 2.32
2161 2801 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2162 2802 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2163 2803 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2164 2804 3.359950 GAAACTACTCCCTCCGTTCCTA 58.640 50.000 0.00 0.00 0.00 2.94
2165 2805 2.177734 GAAACTACTCCCTCCGTTCCT 58.822 52.381 0.00 0.00 0.00 3.36
2166 2806 1.206610 GGAAACTACTCCCTCCGTTCC 59.793 57.143 0.00 0.00 0.00 3.62
2167 2807 1.897802 TGGAAACTACTCCCTCCGTTC 59.102 52.381 0.00 0.00 34.22 3.95
2168 2808 2.019807 TGGAAACTACTCCCTCCGTT 57.980 50.000 0.00 0.00 34.22 4.44
2169 2809 2.019807 TTGGAAACTACTCCCTCCGT 57.980 50.000 0.00 0.00 34.22 4.69
2170 2810 3.072211 GTTTTGGAAACTACTCCCTCCG 58.928 50.000 0.00 0.00 34.22 4.63
2171 2811 3.181437 TGGTTTTGGAAACTACTCCCTCC 60.181 47.826 3.85 0.00 34.22 4.30
2172 2812 4.094830 TGGTTTTGGAAACTACTCCCTC 57.905 45.455 3.85 0.00 34.22 4.30
2173 2813 4.529716 TTGGTTTTGGAAACTACTCCCT 57.470 40.909 3.85 0.00 34.22 4.20
2174 2814 4.647853 AGTTTGGTTTTGGAAACTACTCCC 59.352 41.667 0.00 0.00 39.96 4.30
2175 2815 5.358725 TCAGTTTGGTTTTGGAAACTACTCC 59.641 40.000 0.00 0.00 39.79 3.85
2176 2816 6.445357 TCAGTTTGGTTTTGGAAACTACTC 57.555 37.500 0.00 0.00 39.79 2.59
2177 2817 6.605594 TCATCAGTTTGGTTTTGGAAACTACT 59.394 34.615 0.00 3.28 39.79 2.57
2178 2818 6.801575 TCATCAGTTTGGTTTTGGAAACTAC 58.198 36.000 0.00 1.43 39.79 2.73
2179 2819 6.605594 ACTCATCAGTTTGGTTTTGGAAACTA 59.394 34.615 0.00 0.00 39.79 2.24
2180 2820 5.422012 ACTCATCAGTTTGGTTTTGGAAACT 59.578 36.000 3.85 0.00 41.96 2.66
2186 2826 4.741676 GCTTCACTCATCAGTTTGGTTTTG 59.258 41.667 0.00 0.00 0.00 2.44
2249 2889 2.360165 GCACAAAAGATATCTGGCCCAG 59.640 50.000 3.69 3.69 0.00 4.45
2308 2948 4.301628 TGATACATGCAGATAGCTGTTCG 58.698 43.478 10.15 0.66 45.94 3.95
2351 2992 2.224066 ACCGAGAGATAAATGAAGGGCG 60.224 50.000 0.00 0.00 0.00 6.13
2353 2994 7.386299 CAGATAAACCGAGAGATAAATGAAGGG 59.614 40.741 0.00 0.00 0.00 3.95
2358 2999 9.400638 GTAGACAGATAAACCGAGAGATAAATG 57.599 37.037 0.00 0.00 0.00 2.32
2495 3142 3.322514 CCTCGCCAAGGTTTTCAGA 57.677 52.632 0.00 0.00 40.67 3.27
2770 3419 4.267349 ACTAAAGTGCGACAACACCTAT 57.733 40.909 0.00 0.00 41.67 2.57
2809 3458 3.248363 GCAAAGCAAACCTGGTCAATTTC 59.752 43.478 0.00 0.00 31.28 2.17
2819 3468 0.752658 GAACCCTGCAAAGCAAACCT 59.247 50.000 0.00 0.00 38.41 3.50
2888 3537 1.571773 ATCCACCTTGGTAGGCCACC 61.572 60.000 5.01 11.63 46.01 4.61
2915 3564 1.878102 GCATACTGGCCCTTGATACCG 60.878 57.143 0.00 0.00 0.00 4.02
2919 3568 3.815133 CAGCATACTGGCCCTTGAT 57.185 52.632 0.00 0.00 40.48 2.57
2951 3600 1.376609 GGGTAAGCATGAACAGGCGG 61.377 60.000 0.00 0.00 43.74 6.13
2952 3601 0.676466 TGGGTAAGCATGAACAGGCG 60.676 55.000 0.00 0.00 43.74 5.52
3099 3749 6.502074 AATCCCACTATCCTAGAAAGTTCC 57.498 41.667 0.00 0.00 0.00 3.62
3400 4054 7.542130 GCCATAGGAGACAACAATAAACAAAAG 59.458 37.037 0.00 0.00 0.00 2.27
3405 4059 6.318648 TCATGCCATAGGAGACAACAATAAAC 59.681 38.462 0.00 0.00 0.00 2.01
3482 4136 4.776349 TCTCCTGCAGAAGTAACAAAACA 58.224 39.130 17.39 0.00 0.00 2.83
3483 4137 4.816925 ACTCTCCTGCAGAAGTAACAAAAC 59.183 41.667 17.39 0.00 0.00 2.43
3484 4138 4.816385 CACTCTCCTGCAGAAGTAACAAAA 59.184 41.667 17.39 0.00 0.00 2.44
3730 4384 0.811281 GTTGATTGGAGGGCGGAAAG 59.189 55.000 0.00 0.00 0.00 2.62
3744 4398 2.676839 CGCAGAGCAAATCAGAGTTGAT 59.323 45.455 14.81 8.05 45.92 2.57
3830 4484 2.498078 GTTCGATGGAGAGAGGAAACCT 59.502 50.000 0.00 0.00 36.03 3.50
4118 4772 1.493022 AGGTAGCTCCCAACAAACACA 59.507 47.619 0.00 0.00 36.75 3.72
4235 4889 1.591703 GATGCCGCCGATCAGGATA 59.408 57.895 7.64 0.00 45.00 2.59
4460 5114 1.457009 GGAAGAGGTAGAGCGCCGAT 61.457 60.000 2.29 0.00 0.00 4.18
4469 5123 1.405821 CCAGCGTACAGGAAGAGGTAG 59.594 57.143 0.00 0.00 0.00 3.18
4692 5346 6.069684 AGCTGAAAACATATGCTATGCTTC 57.930 37.500 1.58 0.00 31.71 3.86
4825 5479 9.469807 GTGACCACAACAATAAACATAAATCAA 57.530 29.630 0.00 0.00 0.00 2.57
4919 5573 7.095523 CCATTAAATTCTGCCAAAACAGACAAG 60.096 37.037 0.00 0.00 46.13 3.16
4973 5627 4.012374 AGCACAAGAATTACAGGTCATGG 58.988 43.478 0.00 0.00 0.00 3.66
5000 5654 1.601903 CTTACAAGCAGCAAACCGACA 59.398 47.619 0.00 0.00 0.00 4.35
5031 5685 5.097742 TCTTATGCCTCCAATTCGAAAGA 57.902 39.130 0.00 0.00 39.20 2.52
5061 5715 9.331282 CTCTATTCCCTTCTTATTTAACAGGTG 57.669 37.037 0.00 0.00 0.00 4.00
5110 5765 0.735978 CGCGAGTAGTTGTCATGCCA 60.736 55.000 0.00 0.00 0.00 4.92
5128 5783 5.470098 AGAAACTAGGGCATATTGTATTGCG 59.530 40.000 0.00 0.00 39.78 4.85
5161 5816 1.680860 GGCTATGCTTTGGGTTACCGT 60.681 52.381 0.00 0.00 40.75 4.83
5163 5818 2.427095 CAAGGCTATGCTTTGGGTTACC 59.573 50.000 6.52 0.00 41.00 2.85
5239 5894 9.137459 TGGTCTAGACAATTTAAAACAATTCCA 57.863 29.630 23.91 4.09 0.00 3.53
5240 5895 9.406828 GTGGTCTAGACAATTTAAAACAATTCC 57.593 33.333 23.91 1.42 0.00 3.01
5259 5972 6.542821 ACTGATGGAATTTTCTTGTGGTCTA 58.457 36.000 0.00 0.00 0.00 2.59
5264 5977 5.754406 TGCAAACTGATGGAATTTTCTTGTG 59.246 36.000 0.00 0.00 0.00 3.33
5266 5979 5.987347 AGTGCAAACTGATGGAATTTTCTTG 59.013 36.000 0.00 0.00 0.00 3.02
5267 5980 6.165700 AGTGCAAACTGATGGAATTTTCTT 57.834 33.333 0.00 0.00 0.00 2.52
5269 5982 5.754890 ACAAGTGCAAACTGATGGAATTTTC 59.245 36.000 0.00 0.00 26.10 2.29
5270 5983 5.524646 CACAAGTGCAAACTGATGGAATTTT 59.475 36.000 0.00 0.00 26.10 1.82
5271 5984 5.051816 CACAAGTGCAAACTGATGGAATTT 58.948 37.500 0.00 0.00 26.10 1.82
5272 5985 4.501915 CCACAAGTGCAAACTGATGGAATT 60.502 41.667 0.00 0.00 30.96 2.17
5273 5986 3.006110 CCACAAGTGCAAACTGATGGAAT 59.994 43.478 0.00 0.00 30.96 3.01
5274 5987 2.361757 CCACAAGTGCAAACTGATGGAA 59.638 45.455 0.00 0.00 30.96 3.53
5275 5988 1.955778 CCACAAGTGCAAACTGATGGA 59.044 47.619 0.00 0.00 30.96 3.41
5276 5989 1.000060 CCCACAAGTGCAAACTGATGG 60.000 52.381 0.00 0.00 0.00 3.51
5277 5990 1.955778 TCCCACAAGTGCAAACTGATG 59.044 47.619 0.00 0.00 0.00 3.07
5278 5991 2.233271 CTCCCACAAGTGCAAACTGAT 58.767 47.619 0.00 0.00 0.00 2.90
5279 5992 1.679139 CTCCCACAAGTGCAAACTGA 58.321 50.000 0.00 0.00 0.00 3.41
5280 5993 0.670162 CCTCCCACAAGTGCAAACTG 59.330 55.000 0.00 0.00 0.00 3.16
5281 5994 0.258774 ACCTCCCACAAGTGCAAACT 59.741 50.000 0.00 0.00 0.00 2.66
5282 5995 0.668535 GACCTCCCACAAGTGCAAAC 59.331 55.000 0.00 0.00 0.00 2.93
5283 5996 0.257328 TGACCTCCCACAAGTGCAAA 59.743 50.000 0.00 0.00 0.00 3.68
5284 5997 0.478072 ATGACCTCCCACAAGTGCAA 59.522 50.000 0.00 0.00 0.00 4.08
5285 5998 1.278985 CTATGACCTCCCACAAGTGCA 59.721 52.381 0.00 0.00 0.00 4.57
5286 5999 2.014068 GCTATGACCTCCCACAAGTGC 61.014 57.143 0.00 0.00 0.00 4.40
5287 6000 1.556911 AGCTATGACCTCCCACAAGTG 59.443 52.381 0.00 0.00 0.00 3.16
5288 6001 1.834263 GAGCTATGACCTCCCACAAGT 59.166 52.381 0.00 0.00 0.00 3.16
5289 6002 1.202463 CGAGCTATGACCTCCCACAAG 60.202 57.143 0.00 0.00 0.00 3.16
5290 6003 0.824109 CGAGCTATGACCTCCCACAA 59.176 55.000 0.00 0.00 0.00 3.33
5373 6106 4.154195 GTGCACATAGACACCTAAACTTGG 59.846 45.833 13.17 0.00 0.00 3.61
5374 6107 4.754618 TGTGCACATAGACACCTAAACTTG 59.245 41.667 17.42 0.00 35.90 3.16
5375 6108 4.968259 TGTGCACATAGACACCTAAACTT 58.032 39.130 17.42 0.00 35.90 2.66
5376 6109 4.617253 TGTGCACATAGACACCTAAACT 57.383 40.909 17.42 0.00 35.90 2.66
5377 6110 5.238650 AGTTTGTGCACATAGACACCTAAAC 59.761 40.000 22.39 16.83 34.98 2.01
5378 6111 5.373222 AGTTTGTGCACATAGACACCTAAA 58.627 37.500 22.39 4.66 35.90 1.85
5379 6112 4.968259 AGTTTGTGCACATAGACACCTAA 58.032 39.130 22.39 5.47 35.90 2.69
5380 6113 4.039852 TGAGTTTGTGCACATAGACACCTA 59.960 41.667 22.39 0.00 35.90 3.08
5381 6114 3.181455 TGAGTTTGTGCACATAGACACCT 60.181 43.478 22.39 8.68 35.90 4.00
5382 6115 3.138304 TGAGTTTGTGCACATAGACACC 58.862 45.455 22.39 14.66 35.90 4.16
5383 6116 4.811555 TTGAGTTTGTGCACATAGACAC 57.188 40.909 22.39 17.32 37.31 3.67
5384 6117 4.881273 AGTTTGAGTTTGTGCACATAGACA 59.119 37.500 22.39 15.58 0.00 3.41
5385 6118 5.424121 AGTTTGAGTTTGTGCACATAGAC 57.576 39.130 22.39 18.67 0.00 2.59
5386 6119 7.744087 ATAAGTTTGAGTTTGTGCACATAGA 57.256 32.000 22.39 2.25 0.00 1.98
5387 6120 8.075574 TCAATAAGTTTGAGTTTGTGCACATAG 58.924 33.333 22.39 0.00 0.00 2.23
5388 6121 7.935520 TCAATAAGTTTGAGTTTGTGCACATA 58.064 30.769 22.39 13.86 0.00 2.29
5389 6122 6.804677 TCAATAAGTTTGAGTTTGTGCACAT 58.195 32.000 22.39 5.59 0.00 3.21
5390 6123 6.201226 TCAATAAGTTTGAGTTTGTGCACA 57.799 33.333 17.42 17.42 0.00 4.57
5391 6124 6.972328 TCTTCAATAAGTTTGAGTTTGTGCAC 59.028 34.615 10.75 10.75 34.13 4.57
5392 6125 7.094508 TCTTCAATAAGTTTGAGTTTGTGCA 57.905 32.000 0.00 0.00 34.13 4.57
5393 6126 7.702348 ACTTCTTCAATAAGTTTGAGTTTGTGC 59.298 33.333 0.00 0.00 33.39 4.57
5394 6127 9.013490 CACTTCTTCAATAAGTTTGAGTTTGTG 57.987 33.333 0.00 0.00 34.99 3.33
5395 6128 8.190784 CCACTTCTTCAATAAGTTTGAGTTTGT 58.809 33.333 0.00 0.00 34.99 2.83
5396 6129 8.190784 ACCACTTCTTCAATAAGTTTGAGTTTG 58.809 33.333 0.00 0.00 34.99 2.93
5399 6132 7.054124 TCACCACTTCTTCAATAAGTTTGAGT 58.946 34.615 0.00 0.00 34.99 3.41
5465 6199 1.277557 GGCATGGTTGGGCAAATTGTA 59.722 47.619 0.00 0.00 0.00 2.41
5479 6213 1.450312 GTCGGTTGGAGAGGCATGG 60.450 63.158 0.00 0.00 0.00 3.66
5482 6216 3.691342 CGGTCGGTTGGAGAGGCA 61.691 66.667 0.00 0.00 0.00 4.75
5519 6253 5.507315 CCAAAGGTTAAAGTCTTCGCATTGT 60.507 40.000 0.00 0.00 0.00 2.71
5531 6265 5.862678 TTGAACCCTTCCAAAGGTTAAAG 57.137 39.130 5.09 0.00 46.38 1.85
5533 6267 5.274015 AGTTTGAACCCTTCCAAAGGTTAA 58.726 37.500 5.09 0.00 46.38 2.01
5538 6272 5.729510 TGAAAAGTTTGAACCCTTCCAAAG 58.270 37.500 0.00 0.00 33.52 2.77
5545 6279 3.512329 ACGGTTTGAAAAGTTTGAACCCT 59.488 39.130 16.81 8.04 37.13 4.34
5550 6284 5.379732 ACTTCACGGTTTGAAAAGTTTGA 57.620 34.783 0.00 0.00 43.90 2.69
5566 6300 0.462047 CGCTACCCCATGGACTTCAC 60.462 60.000 15.22 0.00 34.81 3.18
5590 6325 7.282585 TGTTTGGAAGTATTCTATGGATGGAG 58.717 38.462 0.00 0.00 46.56 3.86
5668 6405 6.420306 CAGAGACCACATATGAGAATTCTTCG 59.580 42.308 9.87 0.00 34.02 3.79
5745 6484 4.786425 AGGAGAAAGAGTTGAAAAGTGCT 58.214 39.130 0.00 0.00 0.00 4.40
5806 6545 2.683475 CCCTTGGCTACTTGGGGG 59.317 66.667 0.00 0.00 36.15 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.