Multiple sequence alignment - TraesCS5B01G361600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G361600 chr5B 100.000 4308 0 0 1 4308 541283253 541287560 0.000000e+00 7956.0
1 TraesCS5B01G361600 chr5B 83.118 853 86 20 1969 2793 642745343 642746165 0.000000e+00 725.0
2 TraesCS5B01G361600 chr5B 82.568 849 90 24 1969 2789 642721050 642721868 0.000000e+00 695.0
3 TraesCS5B01G361600 chr5B 91.826 367 29 1 1969 2335 642574125 642574490 1.070000e-140 510.0
4 TraesCS5B01G361600 chr5B 90.217 368 34 2 1969 2335 642489171 642489537 3.010000e-131 479.0
5 TraesCS5B01G361600 chr5B 90.301 299 29 0 2037 2335 642480061 642480359 4.040000e-105 392.0
6 TraesCS5B01G361600 chr5B 78.009 673 109 20 2564 3210 541305514 541306173 1.880000e-103 387.0
7 TraesCS5B01G361600 chr5B 89.769 303 29 2 2488 2789 642574546 642574847 1.880000e-103 387.0
8 TraesCS5B01G361600 chr5B 81.985 272 28 8 914 1175 541156321 541156581 1.210000e-50 211.0
9 TraesCS5B01G361600 chr5B 78.859 298 37 14 1579 1856 642744316 642744607 1.230000e-40 178.0
10 TraesCS5B01G361600 chr5B 78.667 300 37 16 1579 1856 642487828 642488122 1.590000e-39 174.0
11 TraesCS5B01G361600 chr5B 78.261 299 39 14 1579 1856 642572898 642573191 7.410000e-38 169.0
12 TraesCS5B01G361600 chr5B 78.188 298 39 14 1579 1856 642720024 642720315 2.660000e-37 167.0
13 TraesCS5B01G361600 chr5B 82.301 113 15 4 1064 1172 541956010 541955899 4.590000e-15 93.5
14 TraesCS5B01G361600 chr5A 95.110 1411 58 6 2560 3965 561267911 561269315 0.000000e+00 2213.0
15 TraesCS5B01G361600 chr5A 94.147 598 34 1 1967 2563 561267234 561267831 0.000000e+00 909.0
16 TraesCS5B01G361600 chr5A 88.840 457 32 11 788 1230 561264617 561265068 1.050000e-150 544.0
17 TraesCS5B01G361600 chr5A 79.823 679 107 18 2560 3216 561978730 561978060 6.520000e-128 468.0
18 TraesCS5B01G361600 chr5A 79.003 662 109 14 2577 3215 561517134 561517788 3.980000e-115 425.0
19 TraesCS5B01G361600 chr5A 87.719 342 30 6 3972 4305 561269349 561269686 5.220000e-104 388.0
20 TraesCS5B01G361600 chr5A 85.269 353 40 7 1969 2312 561505407 561505756 1.910000e-93 353.0
21 TraesCS5B01G361600 chr5A 89.320 103 6 3 2916 3017 64808810 64808908 1.630000e-24 124.0
22 TraesCS5B01G361600 chr5A 85.321 109 13 2 1064 1172 561980399 561980294 4.550000e-20 110.0
23 TraesCS5B01G361600 chr5D 92.035 1582 107 7 2597 4173 444476067 444477634 0.000000e+00 2206.0
24 TraesCS5B01G361600 chr5D 87.030 1488 137 20 1969 3429 511525167 511526625 0.000000e+00 1628.0
25 TraesCS5B01G361600 chr5D 86.980 1275 122 22 1 1244 444473617 444474878 0.000000e+00 1395.0
26 TraesCS5B01G361600 chr5D 88.370 1092 97 9 2358 3423 511590353 511591440 0.000000e+00 1286.0
27 TraesCS5B01G361600 chr5D 95.866 508 20 1 1974 2480 444475532 444476039 0.000000e+00 821.0
28 TraesCS5B01G361600 chr5D 90.062 644 49 6 2488 3119 511626885 511627525 0.000000e+00 821.0
29 TraesCS5B01G361600 chr5D 86.236 356 33 9 894 1236 511588636 511588988 5.260000e-99 372.0
30 TraesCS5B01G361600 chr5D 85.345 348 27 4 1537 1877 444474874 444475204 5.340000e-89 339.0
31 TraesCS5B01G361600 chr5D 78.992 119 19 3 1070 1182 444353259 444353377 4.620000e-10 76.8
32 TraesCS5B01G361600 chr1D 78.799 533 100 9 2 525 229409352 229408824 3.190000e-91 346.0
33 TraesCS5B01G361600 chr2D 80.180 444 73 13 1 442 71776736 71776306 6.950000e-83 318.0
34 TraesCS5B01G361600 chr2D 92.000 50 3 1 1364 1412 45688007 45687958 7.730000e-08 69.4
35 TraesCS5B01G361600 chr3B 76.895 277 49 8 273 535 438328659 438328384 4.490000e-30 143.0
36 TraesCS5B01G361600 chr6D 89.381 113 10 2 2905 3017 4694713 4694823 1.620000e-29 141.0
37 TraesCS5B01G361600 chr2A 90.196 102 8 2 2916 3017 467109002 467108903 9.720000e-27 132.0
38 TraesCS5B01G361600 chr3D 90.291 103 5 3 2916 3017 263329984 263329886 3.500000e-26 130.0
39 TraesCS5B01G361600 chr7B 75.743 202 37 7 343 534 504771418 504771617 1.650000e-14 91.6
40 TraesCS5B01G361600 chr7B 83.168 101 11 6 4014 4112 706113079 706113175 2.130000e-13 87.9
41 TraesCS5B01G361600 chr6A 80.870 115 21 1 1429 1543 445415241 445415128 5.930000e-14 89.8
42 TraesCS5B01G361600 chr4B 77.500 160 28 7 7 165 368068840 368068688 5.930000e-14 89.8
43 TraesCS5B01G361600 chr1B 88.060 67 7 1 1452 1518 267997480 267997545 1.280000e-10 78.7
44 TraesCS5B01G361600 chr7A 93.333 45 1 2 1293 1335 222779771 222779815 1.000000e-06 65.8
45 TraesCS5B01G361600 chr1A 85.484 62 9 0 1457 1518 133146901 133146840 1.000000e-06 65.8
46 TraesCS5B01G361600 chr6B 90.000 50 4 1 1364 1412 246770864 246770913 3.600000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G361600 chr5B 541283253 541287560 4307 False 7956.000000 7956 100.000000 1 4308 1 chr5B.!!$F2 4307
1 TraesCS5B01G361600 chr5B 642744316 642746165 1849 False 451.500000 725 80.988500 1579 2793 2 chr5B.!!$F8 1214
2 TraesCS5B01G361600 chr5B 642720024 642721868 1844 False 431.000000 695 80.378000 1579 2789 2 chr5B.!!$F7 1210
3 TraesCS5B01G361600 chr5B 541305514 541306173 659 False 387.000000 387 78.009000 2564 3210 1 chr5B.!!$F3 646
4 TraesCS5B01G361600 chr5B 642572898 642574847 1949 False 355.333333 510 86.618667 1579 2789 3 chr5B.!!$F6 1210
5 TraesCS5B01G361600 chr5B 642487828 642489537 1709 False 326.500000 479 84.442000 1579 2335 2 chr5B.!!$F5 756
6 TraesCS5B01G361600 chr5A 561264617 561269686 5069 False 1013.500000 2213 91.454000 788 4305 4 chr5A.!!$F4 3517
7 TraesCS5B01G361600 chr5A 561517134 561517788 654 False 425.000000 425 79.003000 2577 3215 1 chr5A.!!$F3 638
8 TraesCS5B01G361600 chr5A 561978060 561980399 2339 True 289.000000 468 82.572000 1064 3216 2 chr5A.!!$R1 2152
9 TraesCS5B01G361600 chr5D 511525167 511526625 1458 False 1628.000000 1628 87.030000 1969 3429 1 chr5D.!!$F2 1460
10 TraesCS5B01G361600 chr5D 444473617 444477634 4017 False 1190.250000 2206 90.056500 1 4173 4 chr5D.!!$F4 4172
11 TraesCS5B01G361600 chr5D 511588636 511591440 2804 False 829.000000 1286 87.303000 894 3423 2 chr5D.!!$F5 2529
12 TraesCS5B01G361600 chr5D 511626885 511627525 640 False 821.000000 821 90.062000 2488 3119 1 chr5D.!!$F3 631
13 TraesCS5B01G361600 chr1D 229408824 229409352 528 True 346.000000 346 78.799000 2 525 1 chr1D.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 519 0.183014 TTGTGTCCGTTTAGCCCCAA 59.817 50.0 0.0 0.0 0.00 4.12 F
810 828 0.316032 GACGACGGATAGCGAGTCAC 60.316 60.0 0.0 0.0 34.80 3.67 F
947 968 0.325272 GTCGCCTTTTCCTCCTCCTT 59.675 55.0 0.0 0.0 0.00 3.36 F
1176 1228 0.823356 AGGACAAAGGTGCGTGCATT 60.823 50.0 0.0 0.0 40.77 3.56 F
1281 1336 1.217916 TGTCCCAAAACTGTCCCTCA 58.782 50.0 0.0 0.0 0.00 3.86 F
1541 1596 1.553706 TTTCGGACTGAGGGAGTACC 58.446 55.0 0.0 0.0 33.83 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 3258 0.176680 AGTGCAGCGGATCGAAGAAT 59.823 50.000 0.00 0.00 43.58 2.40 R
1952 3926 0.178970 TAGACATACTCCCTCCGCCC 60.179 60.000 0.00 0.00 0.00 6.13 R
2480 5284 0.609131 ATTGTGAAACCTGGGAGGCG 60.609 55.000 0.00 0.00 39.63 5.52 R
2756 5768 1.135315 CGCTTCATGCAGGAAACGG 59.865 57.895 24.62 11.05 43.06 4.44 R
3221 6278 1.767759 AAGGCAGCATTGGTCATACC 58.232 50.000 0.00 0.00 39.22 2.73 R
3514 6571 0.387202 CGTTGCATGGACCCAACAAA 59.613 50.000 12.47 0.00 40.93 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.760086 CCTCGAGCTCCCCTCACAT 60.760 63.158 6.99 0.00 40.78 3.21
90 91 1.303317 GCCGGATGGTGTTGGAGTT 60.303 57.895 5.05 0.00 37.67 3.01
101 102 1.069978 TGTTGGAGTTGATGAGCGTCA 59.930 47.619 0.00 0.00 0.00 4.35
127 128 0.971447 GTCGTAGCTTCTCCCCCACT 60.971 60.000 0.00 0.00 0.00 4.00
154 155 1.347221 GACCAAATAGCCGCGAACG 59.653 57.895 8.23 0.00 39.67 3.95
157 158 2.435234 AAATAGCCGCGAACGCCA 60.435 55.556 8.23 0.00 38.22 5.69
165 166 2.356796 CGCGAACGCCAGCAAAAAG 61.357 57.895 13.40 0.00 37.98 2.27
166 167 2.016165 GCGAACGCCAGCAAAAAGG 61.016 57.895 8.03 0.00 34.56 3.11
171 173 2.344872 GCCAGCAAAAAGGCCCTG 59.655 61.111 0.00 0.00 45.18 4.45
172 174 2.510551 GCCAGCAAAAAGGCCCTGT 61.511 57.895 0.00 0.00 45.18 4.00
253 255 2.047179 GAAAGCGAGGAAGGCGGT 60.047 61.111 0.00 0.00 41.69 5.68
255 257 2.781595 GAAAGCGAGGAAGGCGGTCA 62.782 60.000 0.00 0.00 38.67 4.02
309 314 4.176752 GGGGCGAAGGGCGAGAAT 62.177 66.667 0.00 0.00 44.92 2.40
321 326 2.284190 GGCGAGAATGGGAAGAGAAAG 58.716 52.381 0.00 0.00 0.00 2.62
333 338 0.252103 AGAGAAAGGGGGCGTCTGTA 60.252 55.000 0.00 0.00 0.00 2.74
366 371 1.386057 GCCAGGGGAGGATAAGGGT 60.386 63.158 0.00 0.00 0.00 4.34
374 379 2.017559 GAGGATAAGGGTGCGCGTCT 62.018 60.000 8.43 0.00 0.00 4.18
466 472 3.128068 GGGCGAAAAATGGACGTTTATCT 59.872 43.478 0.00 0.00 0.00 1.98
467 473 4.333372 GGGCGAAAAATGGACGTTTATCTA 59.667 41.667 0.00 0.00 0.00 1.98
478 484 4.365723 GACGTTTATCTATTTGCTCCCGA 58.634 43.478 0.00 0.00 0.00 5.14
483 494 1.227973 CTATTTGCTCCCGAGGGCC 60.228 63.158 2.58 0.00 34.68 5.80
496 507 4.337060 GGGCCGCGTTTTGTGTCC 62.337 66.667 4.92 0.00 0.00 4.02
508 519 0.183014 TTGTGTCCGTTTAGCCCCAA 59.817 50.000 0.00 0.00 0.00 4.12
560 572 3.307762 CCTTAGAGTTGGCCTTAGTGCTT 60.308 47.826 3.32 0.00 0.00 3.91
563 575 2.637872 AGAGTTGGCCTTAGTGCTTGTA 59.362 45.455 3.32 0.00 0.00 2.41
572 584 5.402398 GCCTTAGTGCTTGTATTTTTCTGG 58.598 41.667 0.00 0.00 0.00 3.86
609 621 6.729391 TTTTTGATGATGTGCATTCAATGG 57.271 33.333 0.00 0.00 37.34 3.16
622 634 4.749598 GCATTCAATGGGAGAAAACGTTTT 59.250 37.500 25.46 25.46 0.00 2.43
624 636 6.648502 CATTCAATGGGAGAAAACGTTTTTG 58.351 36.000 25.86 17.85 0.00 2.44
625 637 5.331876 TCAATGGGAGAAAACGTTTTTGT 57.668 34.783 25.86 16.84 0.00 2.83
627 639 5.578727 TCAATGGGAGAAAACGTTTTTGTTG 59.421 36.000 25.86 20.64 31.10 3.33
629 641 4.739195 TGGGAGAAAACGTTTTTGTTGAG 58.261 39.130 25.86 0.00 31.10 3.02
638 650 3.241322 ACGTTTTTGTTGAGTACGAGACG 59.759 43.478 0.00 0.00 37.45 4.18
646 658 4.335594 TGTTGAGTACGAGACGATGATGAT 59.664 41.667 0.00 0.00 0.00 2.45
647 659 5.526111 TGTTGAGTACGAGACGATGATGATA 59.474 40.000 0.00 0.00 0.00 2.15
648 660 6.037830 TGTTGAGTACGAGACGATGATGATAA 59.962 38.462 0.00 0.00 0.00 1.75
649 661 5.986936 TGAGTACGAGACGATGATGATAAC 58.013 41.667 0.00 0.00 0.00 1.89
651 663 6.260271 TGAGTACGAGACGATGATGATAACTT 59.740 38.462 0.00 0.00 0.00 2.66
657 669 8.135529 ACGAGACGATGATGATAACTTCATTAA 58.864 33.333 3.38 0.00 45.29 1.40
658 670 9.133627 CGAGACGATGATGATAACTTCATTAAT 57.866 33.333 3.38 0.00 45.29 1.40
702 719 7.962918 GCTTAATTTTTCAAAGATGCTCGTAGA 59.037 33.333 0.00 0.00 0.00 2.59
705 722 6.861065 TTTTTCAAAGATGCTCGTAGAAGT 57.139 33.333 0.00 0.00 34.09 3.01
723 740 1.757118 AGTAGGATGCACGCTGTATGT 59.243 47.619 0.00 0.00 0.00 2.29
724 741 1.860950 GTAGGATGCACGCTGTATGTG 59.139 52.381 0.00 0.00 40.32 3.21
742 759 2.918802 TTCGTAGCGGTGGGTGGT 60.919 61.111 0.00 0.00 0.00 4.16
743 760 3.229156 TTCGTAGCGGTGGGTGGTG 62.229 63.158 0.00 0.00 0.00 4.17
744 761 3.998672 CGTAGCGGTGGGTGGTGT 61.999 66.667 0.00 0.00 0.00 4.16
745 762 2.638354 CGTAGCGGTGGGTGGTGTA 61.638 63.158 0.00 0.00 0.00 2.90
746 763 1.902556 GTAGCGGTGGGTGGTGTAT 59.097 57.895 0.00 0.00 0.00 2.29
747 764 0.461339 GTAGCGGTGGGTGGTGTATG 60.461 60.000 0.00 0.00 0.00 2.39
748 765 2.246761 TAGCGGTGGGTGGTGTATGC 62.247 60.000 0.00 0.00 0.00 3.14
749 766 2.349376 CGGTGGGTGGTGTATGCA 59.651 61.111 0.00 0.00 0.00 3.96
750 767 2.038269 CGGTGGGTGGTGTATGCAC 61.038 63.158 5.22 5.22 44.53 4.57
751 768 2.038269 GGTGGGTGGTGTATGCACG 61.038 63.158 7.89 0.00 46.13 5.34
752 769 1.302192 GTGGGTGGTGTATGCACGT 60.302 57.895 7.89 0.00 46.13 4.49
754 771 0.906066 TGGGTGGTGTATGCACGTAT 59.094 50.000 7.89 0.00 46.13 3.06
755 772 1.279558 TGGGTGGTGTATGCACGTATT 59.720 47.619 7.89 0.00 46.13 1.89
756 773 2.290387 TGGGTGGTGTATGCACGTATTT 60.290 45.455 7.89 0.00 46.13 1.40
757 774 2.096819 GGGTGGTGTATGCACGTATTTG 59.903 50.000 7.89 0.00 46.13 2.32
758 775 2.477189 GGTGGTGTATGCACGTATTTGC 60.477 50.000 7.89 0.00 46.13 3.68
772 790 4.977103 CGTATTTGCAAACGTTTCTGTTG 58.023 39.130 15.41 1.03 34.48 3.33
780 798 2.863401 ACGTTTCTGTTGAAAAGGCC 57.137 45.000 0.00 0.00 42.91 5.19
807 825 1.812922 ACGACGACGGATAGCGAGT 60.813 57.895 12.58 0.00 44.46 4.18
808 826 1.083529 CGACGACGGATAGCGAGTC 60.084 63.158 0.00 0.00 35.72 3.36
810 828 0.316032 GACGACGGATAGCGAGTCAC 60.316 60.000 0.00 0.00 34.80 3.67
812 830 1.009900 GACGGATAGCGAGTCACGG 60.010 63.158 0.00 0.00 42.83 4.94
821 839 3.986006 GAGTCACGGTGGCGGTGA 61.986 66.667 7.14 5.60 40.44 4.02
823 841 2.813908 GTCACGGTGGCGGTGATC 60.814 66.667 8.50 0.00 43.44 2.92
848 866 3.126879 CACGTGGACGGCATGCAT 61.127 61.111 21.36 6.73 44.95 3.96
904 925 3.046087 CACAGGCCACAGCACTCG 61.046 66.667 5.01 0.00 42.56 4.18
947 968 0.325272 GTCGCCTTTTCCTCCTCCTT 59.675 55.000 0.00 0.00 0.00 3.36
977 1001 1.519246 CTGCAGGATTCGAGCCAGA 59.481 57.895 5.57 0.00 0.00 3.86
1074 1116 1.996798 TCAACGTGGAGGTCTTCTCT 58.003 50.000 0.00 0.00 42.10 3.10
1176 1228 0.823356 AGGACAAAGGTGCGTGCATT 60.823 50.000 0.00 0.00 40.77 3.56
1214 1266 2.737376 GGTCGGTGCCGTTGACTC 60.737 66.667 10.60 0.00 40.74 3.36
1215 1267 2.028484 GTCGGTGCCGTTGACTCA 59.972 61.111 10.60 0.00 40.74 3.41
1250 1305 9.857957 CTTCTAATTTTCTTTAGTACTCTCCGT 57.142 33.333 0.00 0.00 32.21 4.69
1254 1309 6.998258 TTTTCTTTAGTACTCTCCGTTTCG 57.002 37.500 0.00 0.00 0.00 3.46
1255 1310 5.947228 TTCTTTAGTACTCTCCGTTTCGA 57.053 39.130 0.00 0.00 0.00 3.71
1256 1311 5.947228 TCTTTAGTACTCTCCGTTTCGAA 57.053 39.130 0.00 0.00 0.00 3.71
1257 1312 6.317789 TCTTTAGTACTCTCCGTTTCGAAA 57.682 37.500 6.47 6.47 0.00 3.46
1258 1313 6.738114 TCTTTAGTACTCTCCGTTTCGAAAA 58.262 36.000 13.10 0.00 0.00 2.29
1259 1314 7.202526 TCTTTAGTACTCTCCGTTTCGAAAAA 58.797 34.615 13.10 0.44 0.00 1.94
1260 1315 6.753897 TTAGTACTCTCCGTTTCGAAAAAC 57.246 37.500 13.10 0.43 41.16 2.43
1261 1316 4.941657 AGTACTCTCCGTTTCGAAAAACT 58.058 39.130 13.10 3.84 42.18 2.66
1262 1317 5.354767 AGTACTCTCCGTTTCGAAAAACTT 58.645 37.500 13.10 0.00 42.18 2.66
1263 1318 4.531659 ACTCTCCGTTTCGAAAAACTTG 57.468 40.909 13.10 4.55 42.18 3.16
1264 1319 3.937079 ACTCTCCGTTTCGAAAAACTTGT 59.063 39.130 13.10 5.16 42.18 3.16
1265 1320 4.033702 ACTCTCCGTTTCGAAAAACTTGTC 59.966 41.667 13.10 0.00 42.18 3.18
1266 1321 3.310501 TCTCCGTTTCGAAAAACTTGTCC 59.689 43.478 13.10 0.00 42.18 4.02
1267 1322 2.355444 TCCGTTTCGAAAAACTTGTCCC 59.645 45.455 13.10 0.00 42.18 4.46
1268 1323 2.097791 CCGTTTCGAAAAACTTGTCCCA 59.902 45.455 13.10 0.00 42.18 4.37
1269 1324 3.427773 CCGTTTCGAAAAACTTGTCCCAA 60.428 43.478 13.10 0.00 42.18 4.12
1270 1325 4.167268 CGTTTCGAAAAACTTGTCCCAAA 58.833 39.130 13.10 0.00 42.18 3.28
1271 1326 4.621886 CGTTTCGAAAAACTTGTCCCAAAA 59.378 37.500 13.10 0.00 42.18 2.44
1272 1327 5.443562 CGTTTCGAAAAACTTGTCCCAAAAC 60.444 40.000 13.10 0.00 42.18 2.43
1273 1328 5.394224 TTCGAAAAACTTGTCCCAAAACT 57.606 34.783 0.00 0.00 0.00 2.66
1274 1329 4.739195 TCGAAAAACTTGTCCCAAAACTG 58.261 39.130 0.00 0.00 0.00 3.16
1275 1330 4.218852 TCGAAAAACTTGTCCCAAAACTGT 59.781 37.500 0.00 0.00 0.00 3.55
1276 1331 4.561213 CGAAAAACTTGTCCCAAAACTGTC 59.439 41.667 0.00 0.00 0.00 3.51
1277 1332 4.465632 AAAACTTGTCCCAAAACTGTCC 57.534 40.909 0.00 0.00 0.00 4.02
1278 1333 2.067365 ACTTGTCCCAAAACTGTCCC 57.933 50.000 0.00 0.00 0.00 4.46
1279 1334 1.569072 ACTTGTCCCAAAACTGTCCCT 59.431 47.619 0.00 0.00 0.00 4.20
1280 1335 2.230660 CTTGTCCCAAAACTGTCCCTC 58.769 52.381 0.00 0.00 0.00 4.30
1281 1336 1.217916 TGTCCCAAAACTGTCCCTCA 58.782 50.000 0.00 0.00 0.00 3.86
1282 1337 1.566703 TGTCCCAAAACTGTCCCTCAA 59.433 47.619 0.00 0.00 0.00 3.02
1283 1338 2.024846 TGTCCCAAAACTGTCCCTCAAA 60.025 45.455 0.00 0.00 0.00 2.69
1284 1339 3.230976 GTCCCAAAACTGTCCCTCAAAT 58.769 45.455 0.00 0.00 0.00 2.32
1285 1340 3.005791 GTCCCAAAACTGTCCCTCAAATG 59.994 47.826 0.00 0.00 0.00 2.32
1286 1341 2.299867 CCCAAAACTGTCCCTCAAATGG 59.700 50.000 0.00 0.00 0.00 3.16
1287 1342 3.230134 CCAAAACTGTCCCTCAAATGGA 58.770 45.455 0.00 0.00 0.00 3.41
1288 1343 3.256631 CCAAAACTGTCCCTCAAATGGAG 59.743 47.826 0.00 0.00 43.65 3.86
1302 1357 7.461182 CTCAAATGGAGGTAGGAGTATCTAG 57.539 44.000 0.00 0.00 40.13 2.43
1303 1358 5.775701 TCAAATGGAGGTAGGAGTATCTAGC 59.224 44.000 0.00 0.00 37.84 3.42
1304 1359 5.340891 AATGGAGGTAGGAGTATCTAGCA 57.659 43.478 0.00 0.00 39.44 3.49
1305 1360 5.544441 ATGGAGGTAGGAGTATCTAGCAT 57.456 43.478 0.00 0.00 39.44 3.79
1306 1361 6.660147 ATGGAGGTAGGAGTATCTAGCATA 57.340 41.667 0.00 0.00 39.44 3.14
1307 1362 6.464530 TGGAGGTAGGAGTATCTAGCATAA 57.535 41.667 0.00 0.00 39.44 1.90
1308 1363 6.486056 TGGAGGTAGGAGTATCTAGCATAAG 58.514 44.000 0.00 0.00 39.44 1.73
1309 1364 6.045695 TGGAGGTAGGAGTATCTAGCATAAGT 59.954 42.308 0.00 0.00 39.44 2.24
1310 1365 6.949463 GGAGGTAGGAGTATCTAGCATAAGTT 59.051 42.308 0.00 0.00 39.44 2.66
1311 1366 8.108364 GGAGGTAGGAGTATCTAGCATAAGTTA 58.892 40.741 0.00 0.00 39.44 2.24
1312 1367 9.169592 GAGGTAGGAGTATCTAGCATAAGTTAG 57.830 40.741 0.00 0.00 39.44 2.34
1313 1368 8.671409 AGGTAGGAGTATCTAGCATAAGTTAGT 58.329 37.037 0.00 0.00 39.44 2.24
1314 1369 8.732531 GGTAGGAGTATCTAGCATAAGTTAGTG 58.267 40.741 0.00 0.00 37.59 2.74
1315 1370 7.222000 AGGAGTATCTAGCATAAGTTAGTGC 57.778 40.000 8.43 8.43 37.10 4.40
1349 1404 9.720769 ATTCATTTAAAAGAGTACTTCTTCCGA 57.279 29.630 0.00 0.00 45.41 4.55
1350 1405 9.720769 TTCATTTAAAAGAGTACTTCTTCCGAT 57.279 29.630 0.00 0.00 45.41 4.18
1357 1412 9.557061 AAAAGAGTACTTCTTCCGATAAAACTT 57.443 29.630 0.00 0.00 45.41 2.66
1358 1413 8.535690 AAGAGTACTTCTTCCGATAAAACTTG 57.464 34.615 0.00 0.00 42.54 3.16
1359 1414 7.668492 AGAGTACTTCTTCCGATAAAACTTGT 58.332 34.615 0.00 0.00 29.61 3.16
1360 1415 7.813627 AGAGTACTTCTTCCGATAAAACTTGTC 59.186 37.037 0.00 0.00 29.61 3.18
1361 1416 6.872547 AGTACTTCTTCCGATAAAACTTGTCC 59.127 38.462 0.00 0.00 0.00 4.02
1362 1417 5.001874 ACTTCTTCCGATAAAACTTGTCCC 58.998 41.667 0.00 0.00 0.00 4.46
1363 1418 4.627284 TCTTCCGATAAAACTTGTCCCA 57.373 40.909 0.00 0.00 0.00 4.37
1364 1419 4.975631 TCTTCCGATAAAACTTGTCCCAA 58.024 39.130 0.00 0.00 0.00 4.12
1365 1420 5.378332 TCTTCCGATAAAACTTGTCCCAAA 58.622 37.500 0.00 0.00 0.00 3.28
1366 1421 6.007703 TCTTCCGATAAAACTTGTCCCAAAT 58.992 36.000 0.00 0.00 0.00 2.32
1367 1422 5.890424 TCCGATAAAACTTGTCCCAAATC 57.110 39.130 0.00 0.00 0.00 2.17
1368 1423 5.566469 TCCGATAAAACTTGTCCCAAATCT 58.434 37.500 0.00 0.00 0.00 2.40
1369 1424 5.414454 TCCGATAAAACTTGTCCCAAATCTG 59.586 40.000 0.00 0.00 0.00 2.90
1370 1425 5.183140 CCGATAAAACTTGTCCCAAATCTGT 59.817 40.000 0.00 0.00 0.00 3.41
1371 1426 6.294508 CCGATAAAACTTGTCCCAAATCTGTT 60.295 38.462 0.00 0.00 0.00 3.16
1372 1427 6.801862 CGATAAAACTTGTCCCAAATCTGTTC 59.198 38.462 0.00 0.00 0.00 3.18
1373 1428 4.937201 AAACTTGTCCCAAATCTGTTCC 57.063 40.909 0.00 0.00 0.00 3.62
1374 1429 3.884037 ACTTGTCCCAAATCTGTTCCT 57.116 42.857 0.00 0.00 0.00 3.36
1375 1430 4.184649 ACTTGTCCCAAATCTGTTCCTT 57.815 40.909 0.00 0.00 0.00 3.36
1376 1431 5.319043 ACTTGTCCCAAATCTGTTCCTTA 57.681 39.130 0.00 0.00 0.00 2.69
1377 1432 5.701224 ACTTGTCCCAAATCTGTTCCTTAA 58.299 37.500 0.00 0.00 0.00 1.85
1378 1433 6.133356 ACTTGTCCCAAATCTGTTCCTTAAA 58.867 36.000 0.00 0.00 0.00 1.52
1379 1434 6.782494 ACTTGTCCCAAATCTGTTCCTTAAAT 59.218 34.615 0.00 0.00 0.00 1.40
1380 1435 7.290014 ACTTGTCCCAAATCTGTTCCTTAAATT 59.710 33.333 0.00 0.00 0.00 1.82
1381 1436 6.991938 TGTCCCAAATCTGTTCCTTAAATTG 58.008 36.000 0.00 0.00 0.00 2.32
1382 1437 6.780031 TGTCCCAAATCTGTTCCTTAAATTGA 59.220 34.615 0.00 0.00 0.00 2.57
1383 1438 7.454380 TGTCCCAAATCTGTTCCTTAAATTGAT 59.546 33.333 0.00 0.00 0.00 2.57
1384 1439 8.966868 GTCCCAAATCTGTTCCTTAAATTGATA 58.033 33.333 0.00 0.00 0.00 2.15
1385 1440 9.713684 TCCCAAATCTGTTCCTTAAATTGATAT 57.286 29.630 0.00 0.00 0.00 1.63
1416 1471 9.868277 AGCATCAAATTAGTGCTAGATATAGTC 57.132 33.333 9.58 0.00 46.54 2.59
1417 1472 8.802856 GCATCAAATTAGTGCTAGATATAGTCG 58.197 37.037 0.00 0.00 36.02 4.18
1418 1473 9.847706 CATCAAATTAGTGCTAGATATAGTCGT 57.152 33.333 0.00 0.00 0.00 4.34
1436 1491 5.589192 AGTCGTTTATACTTTCTCCATCCG 58.411 41.667 0.00 0.00 0.00 4.18
1437 1492 5.359009 AGTCGTTTATACTTTCTCCATCCGA 59.641 40.000 0.00 0.00 0.00 4.55
1438 1493 6.038356 GTCGTTTATACTTTCTCCATCCGAA 58.962 40.000 0.00 0.00 0.00 4.30
1439 1494 6.532657 GTCGTTTATACTTTCTCCATCCGAAA 59.467 38.462 0.00 0.00 0.00 3.46
1440 1495 7.063780 GTCGTTTATACTTTCTCCATCCGAAAA 59.936 37.037 0.00 0.00 30.73 2.29
1441 1496 7.603404 TCGTTTATACTTTCTCCATCCGAAAAA 59.397 33.333 0.00 0.00 30.73 1.94
1472 1527 9.880157 ATTTCAAATCTGTTCCTTAAATGGATG 57.120 29.630 0.00 0.00 35.83 3.51
1473 1528 8.421249 TTCAAATCTGTTCCTTAAATGGATGT 57.579 30.769 0.00 0.00 35.83 3.06
1474 1529 9.527157 TTCAAATCTGTTCCTTAAATGGATGTA 57.473 29.630 0.00 0.00 35.83 2.29
1475 1530 9.699410 TCAAATCTGTTCCTTAAATGGATGTAT 57.301 29.630 0.00 0.00 35.83 2.29
1476 1531 9.956720 CAAATCTGTTCCTTAAATGGATGTATC 57.043 33.333 0.00 0.00 35.83 2.24
1477 1532 9.927081 AAATCTGTTCCTTAAATGGATGTATCT 57.073 29.630 0.00 0.00 35.83 1.98
1480 1535 8.150945 TCTGTTCCTTAAATGGATGTATCTAGC 58.849 37.037 0.00 0.00 35.83 3.42
1481 1536 7.801104 TGTTCCTTAAATGGATGTATCTAGCA 58.199 34.615 0.00 0.00 35.83 3.49
1482 1537 8.439971 TGTTCCTTAAATGGATGTATCTAGCAT 58.560 33.333 0.00 0.00 35.83 3.79
1483 1538 8.725148 GTTCCTTAAATGGATGTATCTAGCATG 58.275 37.037 0.00 0.00 35.83 4.06
1484 1539 8.206126 TCCTTAAATGGATGTATCTAGCATGA 57.794 34.615 0.00 0.00 0.00 3.07
1485 1540 8.659527 TCCTTAAATGGATGTATCTAGCATGAA 58.340 33.333 0.00 0.00 0.00 2.57
1486 1541 8.944029 CCTTAAATGGATGTATCTAGCATGAAG 58.056 37.037 0.00 0.00 0.00 3.02
1487 1542 9.499479 CTTAAATGGATGTATCTAGCATGAAGT 57.501 33.333 0.00 0.00 0.00 3.01
1488 1543 9.851686 TTAAATGGATGTATCTAGCATGAAGTT 57.148 29.630 0.00 0.00 0.00 2.66
1490 1545 9.499479 AAATGGATGTATCTAGCATGAAGTTAG 57.501 33.333 0.00 0.00 32.79 2.34
1491 1546 7.603180 TGGATGTATCTAGCATGAAGTTAGT 57.397 36.000 0.00 0.00 33.25 2.24
1492 1547 7.436933 TGGATGTATCTAGCATGAAGTTAGTG 58.563 38.462 0.00 0.00 33.25 2.74
1493 1548 6.367422 GGATGTATCTAGCATGAAGTTAGTGC 59.633 42.308 0.00 4.25 39.10 4.40
1495 1550 7.582667 TGTATCTAGCATGAAGTTAGTGCTA 57.417 36.000 16.48 16.48 46.54 3.49
1503 1558 8.415950 AGCATGAAGTTAGTGCTAGATATAGT 57.584 34.615 11.59 0.00 46.54 2.12
1504 1559 8.519526 AGCATGAAGTTAGTGCTAGATATAGTC 58.480 37.037 11.59 0.00 46.54 2.59
1505 1560 8.300286 GCATGAAGTTAGTGCTAGATATAGTCA 58.700 37.037 0.00 0.00 36.02 3.41
1532 1587 5.890424 AAAGACAAACTTTTTCGGACTGA 57.110 34.783 0.00 0.00 45.22 3.41
1533 1588 5.485662 AAGACAAACTTTTTCGGACTGAG 57.514 39.130 0.00 0.00 34.94 3.35
1534 1589 3.877508 AGACAAACTTTTTCGGACTGAGG 59.122 43.478 0.00 0.00 0.00 3.86
1535 1590 2.949644 ACAAACTTTTTCGGACTGAGGG 59.050 45.455 0.00 0.00 0.00 4.30
1536 1591 3.211045 CAAACTTTTTCGGACTGAGGGA 58.789 45.455 0.00 0.00 0.00 4.20
1537 1592 2.841442 ACTTTTTCGGACTGAGGGAG 57.159 50.000 0.00 0.00 0.00 4.30
1538 1593 2.047830 ACTTTTTCGGACTGAGGGAGT 58.952 47.619 0.00 0.00 37.76 3.85
1539 1594 3.236896 ACTTTTTCGGACTGAGGGAGTA 58.763 45.455 0.00 0.00 33.83 2.59
1540 1595 3.006644 ACTTTTTCGGACTGAGGGAGTAC 59.993 47.826 0.00 0.00 33.83 2.73
1541 1596 1.553706 TTTCGGACTGAGGGAGTACC 58.446 55.000 0.00 0.00 33.83 3.34
1605 1676 4.116961 TCCTCCATCGCAAATTACTAACG 58.883 43.478 0.00 0.00 0.00 3.18
1770 3226 5.247507 TCCCAAAATGCGTATCTGATTTG 57.752 39.130 0.00 2.49 0.00 2.32
1774 3230 4.900635 AAATGCGTATCTGATTTGTCCC 57.099 40.909 0.00 0.00 0.00 4.46
1802 3258 7.172532 ACGAAGCAATCAACAAACTTGTATCTA 59.827 33.333 0.00 0.00 41.31 1.98
1883 3661 4.114058 TGTATTACCTCCGTTCCGAAAG 57.886 45.455 0.00 0.00 0.00 2.62
1935 3909 4.082517 ACATGCGGATGTATCTAGCACTAG 60.083 45.833 21.92 0.00 41.27 2.57
1951 3925 2.408704 CACTAGCGACTTTTTCAGGACG 59.591 50.000 0.00 0.00 0.00 4.79
1952 3926 1.993370 CTAGCGACTTTTTCAGGACGG 59.007 52.381 0.00 0.00 0.00 4.79
1954 3928 1.574702 GCGACTTTTTCAGGACGGGG 61.575 60.000 0.00 0.00 0.00 5.73
2067 4824 5.938710 CAGGTGATGATGGAGAAGATATTGG 59.061 44.000 0.00 0.00 0.00 3.16
2178 4945 7.647907 TCTTTTACAAGGTAATTCTGACGAC 57.352 36.000 0.00 0.00 0.00 4.34
2235 5003 6.696148 GCTCATCTTTTTGATAAGCTTCATGG 59.304 38.462 0.00 0.00 41.99 3.66
2243 5011 8.635765 TTTTGATAAGCTTCATGGTTCTTAGT 57.364 30.769 0.00 0.00 37.56 2.24
2445 5249 6.412214 GGGCCTGTTTAGAGTTACTTTGATA 58.588 40.000 0.84 0.00 0.00 2.15
2480 5284 7.647715 GCTACTCTCATTTCATCTACAGACTTC 59.352 40.741 0.00 0.00 0.00 3.01
2519 5355 9.154847 TCACAATTGATCATTACACTTCAGTAG 57.845 33.333 13.59 0.00 0.00 2.57
2538 5374 6.071463 CAGTAGTCATCTTTGCGTAAAACAC 58.929 40.000 0.00 0.00 0.00 3.32
2548 5388 7.699566 TCTTTGCGTAAAACACTTGTTATTCT 58.300 30.769 0.00 0.00 37.25 2.40
2611 5615 9.611284 TTTGAGATTTATTGAACTGTTTCATCG 57.389 29.630 0.00 0.00 41.50 3.84
2665 5676 1.563410 AGGAGAAAGCCTTCATGGAGG 59.437 52.381 16.65 16.65 39.93 4.30
2756 5768 1.670967 GGCTGCTGACAAATTTGAGGC 60.671 52.381 24.64 21.44 0.00 4.70
2921 5941 3.071892 AGGTACACGGAATTCCTGTCAAA 59.928 43.478 24.11 11.24 32.41 2.69
2963 5989 2.025981 CCCATTGGATTGAGACACCTCA 60.026 50.000 3.62 0.00 46.95 3.86
3001 6031 3.233507 AGGAAGCATGTGGACATTGTTT 58.766 40.909 0.00 0.00 33.61 2.83
3221 6278 2.440539 ACTTCCACTAGTGCGTCTTG 57.559 50.000 17.86 2.78 0.00 3.02
3313 6370 4.609336 GCTCTCTGCGTAAACTGAAAACAG 60.609 45.833 0.00 0.00 0.00 3.16
3317 6374 4.207635 TCTGCGTAAACTGAAAACAGTACG 59.792 41.667 16.21 16.21 39.06 3.67
3327 6384 0.944311 AAACAGTACGCAGTCAGCCG 60.944 55.000 0.00 0.00 43.93 5.52
3389 6446 1.537202 GCTTGGTCATGTTGGTCTCAC 59.463 52.381 0.00 0.00 0.00 3.51
3509 6566 2.224305 GCACCTTAACCAGTGACTGTCT 60.224 50.000 12.15 0.33 36.01 3.41
3514 6571 3.891817 CCAGTGACTGTCTGGGGT 58.108 61.111 12.15 0.00 46.03 4.95
3522 6579 0.106217 ACTGTCTGGGGTTTGTTGGG 60.106 55.000 0.00 0.00 0.00 4.12
3529 6586 1.671166 GGGTTTGTTGGGTCCATGC 59.329 57.895 0.00 0.00 0.00 4.06
3540 6597 2.115052 TCCATGCAACGCCTTGGT 59.885 55.556 0.00 0.00 34.07 3.67
3709 6766 0.891373 TCTTTGTGAGCGAGGAGGAG 59.109 55.000 0.00 0.00 0.00 3.69
3730 6787 5.532779 GGAGACATGAAGAAACCTGAACTTT 59.467 40.000 0.00 0.00 0.00 2.66
3738 6795 4.985538 AGAAACCTGAACTTTATGCTGGA 58.014 39.130 0.00 0.00 0.00 3.86
3777 6834 6.696148 CACATACTCTTACCAGTATCGAAACC 59.304 42.308 0.00 0.00 37.47 3.27
3783 6840 6.498304 TCTTACCAGTATCGAAACCGTTATC 58.502 40.000 0.00 0.00 0.00 1.75
3994 7080 5.057149 GGAACGTTGGCAACTAGATGATAT 58.943 41.667 26.26 4.66 37.61 1.63
3995 7081 5.050091 GGAACGTTGGCAACTAGATGATATG 60.050 44.000 26.26 10.36 37.61 1.78
4011 7104 1.224722 TATGTTGCGCGTTGCTGTGA 61.225 50.000 8.43 0.00 46.63 3.58
4048 7141 6.470557 AAAATGCATGATTTTGTGCTACAC 57.529 33.333 0.00 0.00 41.79 2.90
4158 7252 8.582891 AAATGTATAAAAGAGGGGAGGACTAT 57.417 34.615 0.00 0.00 0.00 2.12
4207 7301 4.854784 GCTCTCGCGACCGCATCA 62.855 66.667 17.21 0.00 42.06 3.07
4272 7367 2.692741 CTCCTCCACCCCCTTCCC 60.693 72.222 0.00 0.00 0.00 3.97
4281 7376 2.204464 CCCCTTCCCTTCCCCCTT 60.204 66.667 0.00 0.00 0.00 3.95
4284 7379 2.680370 CCTTCCCTTCCCCCTTCCG 61.680 68.421 0.00 0.00 0.00 4.30
4293 7388 3.781307 CCCCTTCCGCCATCGTCA 61.781 66.667 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.965258 AACACCATCCGGCAGGCA 61.965 61.111 11.44 0.00 37.47 4.75
78 79 1.877680 CGCTCATCAACTCCAACACCA 60.878 52.381 0.00 0.00 0.00 4.17
101 102 1.609555 GGAGAAGCTACGACCATCGAT 59.390 52.381 5.04 0.00 43.74 3.59
105 106 1.049289 GGGGGAGAAGCTACGACCAT 61.049 60.000 0.00 0.00 0.00 3.55
106 107 1.684734 GGGGGAGAAGCTACGACCA 60.685 63.158 0.00 0.00 0.00 4.02
127 128 0.680921 GCTATTTGGTCCTGCAGCCA 60.681 55.000 8.66 8.76 0.00 4.75
157 158 1.138859 GTTTCACAGGGCCTTTTTGCT 59.861 47.619 1.32 0.00 0.00 3.91
166 167 3.723348 GTCCGCGTTTCACAGGGC 61.723 66.667 4.92 0.00 0.00 5.19
167 168 3.411351 CGTCCGCGTTTCACAGGG 61.411 66.667 4.92 0.00 0.00 4.45
303 306 2.420687 CCCCTTTCTCTTCCCATTCTCG 60.421 54.545 0.00 0.00 0.00 4.04
307 312 0.336392 GCCCCCTTTCTCTTCCCATT 59.664 55.000 0.00 0.00 0.00 3.16
309 314 2.602676 CGCCCCCTTTCTCTTCCCA 61.603 63.158 0.00 0.00 0.00 4.37
321 326 4.091939 GGTGGTACAGACGCCCCC 62.092 72.222 0.00 0.00 41.80 5.40
389 394 0.949105 GTTTGCGTCGAGGTGGACAT 60.949 55.000 7.01 0.00 36.73 3.06
419 425 1.381191 GACCCATTTCCGGCCCAAT 60.381 57.895 0.00 0.00 0.00 3.16
466 472 2.915869 GGCCCTCGGGAGCAAATA 59.084 61.111 6.08 0.00 37.50 1.40
467 473 4.489771 CGGCCCTCGGGAGCAAAT 62.490 66.667 6.08 0.00 37.50 2.32
478 484 3.284449 GACACAAAACGCGGCCCT 61.284 61.111 12.47 0.00 0.00 5.19
483 494 1.654463 CTAAACGGACACAAAACGCG 58.346 50.000 3.53 3.53 0.00 6.01
496 507 0.515564 CGTCAGTTTGGGGCTAAACG 59.484 55.000 10.60 7.40 43.51 3.60
533 544 5.128827 CACTAAGGCCAACTCTAAGGTATGA 59.871 44.000 5.01 0.00 0.00 2.15
534 545 5.360591 CACTAAGGCCAACTCTAAGGTATG 58.639 45.833 5.01 0.00 0.00 2.39
535 546 4.141688 GCACTAAGGCCAACTCTAAGGTAT 60.142 45.833 5.01 0.00 0.00 2.73
536 547 3.197116 GCACTAAGGCCAACTCTAAGGTA 59.803 47.826 5.01 0.00 0.00 3.08
537 548 2.027100 GCACTAAGGCCAACTCTAAGGT 60.027 50.000 5.01 0.00 0.00 3.50
538 549 2.237392 AGCACTAAGGCCAACTCTAAGG 59.763 50.000 5.01 0.00 0.00 2.69
539 550 3.618690 AGCACTAAGGCCAACTCTAAG 57.381 47.619 5.01 0.00 0.00 2.18
540 551 3.072476 ACAAGCACTAAGGCCAACTCTAA 59.928 43.478 5.01 0.00 0.00 2.10
542 553 1.421646 ACAAGCACTAAGGCCAACTCT 59.578 47.619 5.01 0.00 0.00 3.24
583 595 7.279981 CCATTGAATGCACATCATCAAAAATCT 59.720 33.333 0.00 0.00 33.40 2.40
590 602 3.633418 TCCCATTGAATGCACATCATCA 58.367 40.909 0.00 0.00 33.40 3.07
592 604 3.905968 TCTCCCATTGAATGCACATCAT 58.094 40.909 0.00 0.00 36.87 2.45
593 605 3.369242 TCTCCCATTGAATGCACATCA 57.631 42.857 0.00 0.00 0.00 3.07
609 621 5.450066 CGTACTCAACAAAAACGTTTTCTCC 59.550 40.000 25.37 6.64 0.00 3.71
622 634 4.155280 TCATCATCGTCTCGTACTCAACAA 59.845 41.667 0.00 0.00 0.00 2.83
624 636 4.274421 TCATCATCGTCTCGTACTCAAC 57.726 45.455 0.00 0.00 0.00 3.18
625 637 6.260271 AGTTATCATCATCGTCTCGTACTCAA 59.740 38.462 0.00 0.00 0.00 3.02
627 639 6.230849 AGTTATCATCATCGTCTCGTACTC 57.769 41.667 0.00 0.00 0.00 2.59
629 641 6.427974 TGAAGTTATCATCATCGTCTCGTAC 58.572 40.000 0.00 0.00 31.50 3.67
672 689 6.762333 AGCATCTTTGAAAAATTAAGCTGGT 58.238 32.000 0.00 0.00 0.00 4.00
674 691 6.583806 ACGAGCATCTTTGAAAAATTAAGCTG 59.416 34.615 0.00 0.00 0.00 4.24
679 696 8.999431 ACTTCTACGAGCATCTTTGAAAAATTA 58.001 29.630 0.00 0.00 29.15 1.40
685 702 5.417894 TCCTACTTCTACGAGCATCTTTGAA 59.582 40.000 0.00 0.00 0.00 2.69
688 705 5.737635 GCATCCTACTTCTACGAGCATCTTT 60.738 44.000 0.00 0.00 0.00 2.52
702 719 2.168521 ACATACAGCGTGCATCCTACTT 59.831 45.455 0.00 0.00 0.00 2.24
705 722 1.480545 ACACATACAGCGTGCATCCTA 59.519 47.619 0.00 0.00 37.93 2.94
723 740 2.340809 CACCCACCGCTACGAACA 59.659 61.111 0.00 0.00 0.00 3.18
724 741 2.433664 CCACCCACCGCTACGAAC 60.434 66.667 0.00 0.00 0.00 3.95
750 767 4.731000 TCAACAGAAACGTTTGCAAATACG 59.269 37.500 20.10 19.33 43.08 3.06
751 768 6.561945 TTCAACAGAAACGTTTGCAAATAC 57.438 33.333 20.10 2.86 0.00 1.89
752 769 7.201478 CCTTTTCAACAGAAACGTTTGCAAATA 60.201 33.333 20.10 0.00 31.38 1.40
754 771 5.107298 CCTTTTCAACAGAAACGTTTGCAAA 60.107 36.000 20.10 8.05 31.38 3.68
755 772 4.387256 CCTTTTCAACAGAAACGTTTGCAA 59.613 37.500 20.10 0.00 31.38 4.08
756 773 3.923461 CCTTTTCAACAGAAACGTTTGCA 59.077 39.130 20.10 0.00 31.38 4.08
757 774 3.241963 GCCTTTTCAACAGAAACGTTTGC 60.242 43.478 20.10 10.09 31.38 3.68
758 775 3.305897 GGCCTTTTCAACAGAAACGTTTG 59.694 43.478 20.10 8.48 31.38 2.93
759 776 3.194755 AGGCCTTTTCAACAGAAACGTTT 59.805 39.130 14.57 14.57 31.38 3.60
760 777 2.758423 AGGCCTTTTCAACAGAAACGTT 59.242 40.909 0.00 0.00 31.38 3.99
761 778 2.357952 GAGGCCTTTTCAACAGAAACGT 59.642 45.455 6.77 0.00 31.38 3.99
762 779 2.287608 GGAGGCCTTTTCAACAGAAACG 60.288 50.000 6.77 0.00 31.38 3.60
765 782 1.142060 TCGGAGGCCTTTTCAACAGAA 59.858 47.619 6.77 0.00 0.00 3.02
767 784 1.160137 CTCGGAGGCCTTTTCAACAG 58.840 55.000 6.77 0.00 0.00 3.16
772 790 1.014564 CGTGACTCGGAGGCCTTTTC 61.015 60.000 6.77 0.00 35.71 2.29
780 798 2.096030 CGTCGTCGTGACTCGGAG 59.904 66.667 2.83 2.83 45.87 4.63
800 818 4.111016 CGCCACCGTGACTCGCTA 62.111 66.667 0.00 0.00 38.35 4.26
807 825 4.429212 CGATCACCGCCACCGTGA 62.429 66.667 0.00 0.00 0.00 4.35
808 826 3.716539 ATCGATCACCGCCACCGTG 62.717 63.158 0.00 0.00 38.37 4.94
810 828 2.961721 CATCGATCACCGCCACCG 60.962 66.667 0.00 0.00 38.37 4.94
812 830 2.230940 CGACATCGATCACCGCCAC 61.231 63.158 0.00 0.00 43.02 5.01
813 831 2.104132 CGACATCGATCACCGCCA 59.896 61.111 0.00 0.00 43.02 5.69
815 833 2.582226 TGCGACATCGATCACCGC 60.582 61.111 21.46 21.46 45.28 5.68
816 834 2.568031 CGTGCGACATCGATCACCG 61.568 63.158 5.26 7.56 43.02 4.94
821 839 1.516386 GTCCACGTGCGACATCGAT 60.516 57.895 23.72 0.00 43.02 3.59
823 841 3.532792 CGTCCACGTGCGACATCG 61.533 66.667 26.19 15.14 37.19 3.84
848 866 1.888512 ACTAGTAACAGCCGACGGAAA 59.111 47.619 20.50 0.00 0.00 3.13
966 990 1.140589 CACGCTCTCTGGCTCGAAT 59.859 57.895 0.00 0.00 0.00 3.34
995 1019 1.517257 GCTCCCGTCGACATCAGTG 60.517 63.158 17.16 2.93 0.00 3.66
1074 1116 3.897681 TACCCGCAGCTCCCTGTCA 62.898 63.158 0.00 0.00 41.26 3.58
1176 1228 4.329545 GCACCAACGGAGGCCTGA 62.330 66.667 12.00 0.00 0.00 3.86
1244 1299 3.310501 GGACAAGTTTTTCGAAACGGAGA 59.689 43.478 10.79 0.00 37.71 3.71
1245 1300 3.547413 GGGACAAGTTTTTCGAAACGGAG 60.547 47.826 10.79 2.75 37.71 4.63
1246 1301 2.355444 GGGACAAGTTTTTCGAAACGGA 59.645 45.455 10.79 0.00 37.71 4.69
1247 1302 2.097791 TGGGACAAGTTTTTCGAAACGG 59.902 45.455 10.79 1.94 37.71 4.44
1248 1303 3.408288 TGGGACAAGTTTTTCGAAACG 57.592 42.857 10.79 0.00 37.71 3.60
1262 1317 1.217916 TGAGGGACAGTTTTGGGACA 58.782 50.000 0.00 0.00 0.00 4.02
1263 1318 2.358322 TTGAGGGACAGTTTTGGGAC 57.642 50.000 0.00 0.00 0.00 4.46
1264 1319 3.230134 CATTTGAGGGACAGTTTTGGGA 58.770 45.455 0.00 0.00 0.00 4.37
1265 1320 2.299867 CCATTTGAGGGACAGTTTTGGG 59.700 50.000 0.00 0.00 0.00 4.12
1266 1321 3.230134 TCCATTTGAGGGACAGTTTTGG 58.770 45.455 0.00 0.00 0.00 3.28
1267 1322 4.510038 CTCCATTTGAGGGACAGTTTTG 57.490 45.455 0.00 0.00 37.45 2.44
1278 1333 6.071616 GCTAGATACTCCTACCTCCATTTGAG 60.072 46.154 0.00 0.00 41.07 3.02
1279 1334 5.775701 GCTAGATACTCCTACCTCCATTTGA 59.224 44.000 0.00 0.00 0.00 2.69
1280 1335 5.540337 TGCTAGATACTCCTACCTCCATTTG 59.460 44.000 0.00 0.00 0.00 2.32
1281 1336 5.716979 TGCTAGATACTCCTACCTCCATTT 58.283 41.667 0.00 0.00 0.00 2.32
1282 1337 5.340891 TGCTAGATACTCCTACCTCCATT 57.659 43.478 0.00 0.00 0.00 3.16
1283 1338 5.544441 ATGCTAGATACTCCTACCTCCAT 57.456 43.478 0.00 0.00 0.00 3.41
1284 1339 6.045695 ACTTATGCTAGATACTCCTACCTCCA 59.954 42.308 0.00 0.00 0.00 3.86
1285 1340 6.486941 ACTTATGCTAGATACTCCTACCTCC 58.513 44.000 0.00 0.00 0.00 4.30
1286 1341 9.169592 CTAACTTATGCTAGATACTCCTACCTC 57.830 40.741 0.00 0.00 0.00 3.85
1287 1342 8.671409 ACTAACTTATGCTAGATACTCCTACCT 58.329 37.037 0.00 0.00 0.00 3.08
1288 1343 8.732531 CACTAACTTATGCTAGATACTCCTACC 58.267 40.741 0.00 0.00 0.00 3.18
1289 1344 8.238631 GCACTAACTTATGCTAGATACTCCTAC 58.761 40.741 0.00 0.00 38.84 3.18
1290 1345 8.338072 GCACTAACTTATGCTAGATACTCCTA 57.662 38.462 0.00 0.00 38.84 2.94
1291 1346 7.222000 GCACTAACTTATGCTAGATACTCCT 57.778 40.000 0.00 0.00 38.84 3.69
1323 1378 9.720769 TCGGAAGAAGTACTCTTTTAAATGAAT 57.279 29.630 0.00 0.00 44.82 2.57
1324 1379 9.720769 ATCGGAAGAAGTACTCTTTTAAATGAA 57.279 29.630 0.00 0.00 44.82 2.57
1331 1386 9.557061 AAGTTTTATCGGAAGAAGTACTCTTTT 57.443 29.630 0.00 0.00 44.82 2.27
1332 1387 8.989980 CAAGTTTTATCGGAAGAAGTACTCTTT 58.010 33.333 0.00 0.00 44.82 2.52
1337 1392 8.219875 TGGGACAAGTTTTATCGGAAGAAGTAC 61.220 40.741 0.00 0.00 39.13 2.73
1338 1393 6.239657 TGGGACAAGTTTTATCGGAAGAAGTA 60.240 38.462 0.00 0.00 39.13 2.24
1339 1394 5.455612 TGGGACAAGTTTTATCGGAAGAAGT 60.456 40.000 0.00 0.00 39.13 3.01
1340 1395 5.001232 TGGGACAAGTTTTATCGGAAGAAG 58.999 41.667 0.00 0.00 39.13 2.85
1341 1396 4.975631 TGGGACAAGTTTTATCGGAAGAA 58.024 39.130 0.00 0.00 39.13 2.52
1342 1397 4.627284 TGGGACAAGTTTTATCGGAAGA 57.373 40.909 0.00 0.00 40.02 2.87
1357 1412 6.780031 TCAATTTAAGGAACAGATTTGGGACA 59.220 34.615 0.00 0.00 0.00 4.02
1358 1413 7.227049 TCAATTTAAGGAACAGATTTGGGAC 57.773 36.000 0.00 0.00 0.00 4.46
1359 1414 9.713684 ATATCAATTTAAGGAACAGATTTGGGA 57.286 29.630 0.00 0.00 0.00 4.37
1391 1446 8.802856 CGACTATATCTAGCACTAATTTGATGC 58.197 37.037 0.00 0.72 39.74 3.91
1392 1447 9.847706 ACGACTATATCTAGCACTAATTTGATG 57.152 33.333 0.00 0.00 0.00 3.07
1410 1465 8.509690 CGGATGGAGAAAGTATAAACGACTATA 58.490 37.037 0.00 0.00 0.00 1.31
1411 1466 7.230108 TCGGATGGAGAAAGTATAAACGACTAT 59.770 37.037 0.00 0.00 0.00 2.12
1412 1467 6.543465 TCGGATGGAGAAAGTATAAACGACTA 59.457 38.462 0.00 0.00 0.00 2.59
1413 1468 5.359009 TCGGATGGAGAAAGTATAAACGACT 59.641 40.000 0.00 0.00 0.00 4.18
1414 1469 5.585390 TCGGATGGAGAAAGTATAAACGAC 58.415 41.667 0.00 0.00 0.00 4.34
1415 1470 5.840243 TCGGATGGAGAAAGTATAAACGA 57.160 39.130 0.00 0.00 0.00 3.85
1416 1471 6.897259 TTTCGGATGGAGAAAGTATAAACG 57.103 37.500 0.00 0.00 33.23 3.60
1446 1501 9.880157 CATCCATTTAAGGAACAGATTTGAAAT 57.120 29.630 0.00 0.00 41.92 2.17
1447 1502 8.869109 ACATCCATTTAAGGAACAGATTTGAAA 58.131 29.630 0.00 0.00 41.92 2.69
1448 1503 8.421249 ACATCCATTTAAGGAACAGATTTGAA 57.579 30.769 0.00 0.00 41.92 2.69
1449 1504 9.699410 ATACATCCATTTAAGGAACAGATTTGA 57.301 29.630 0.00 0.00 41.92 2.69
1450 1505 9.956720 GATACATCCATTTAAGGAACAGATTTG 57.043 33.333 0.00 0.00 41.92 2.32
1451 1506 9.927081 AGATACATCCATTTAAGGAACAGATTT 57.073 29.630 0.00 0.00 41.92 2.17
1454 1509 8.150945 GCTAGATACATCCATTTAAGGAACAGA 58.849 37.037 0.00 0.00 41.92 3.41
1455 1510 7.933577 TGCTAGATACATCCATTTAAGGAACAG 59.066 37.037 0.00 0.00 41.92 3.16
1456 1511 7.801104 TGCTAGATACATCCATTTAAGGAACA 58.199 34.615 0.00 0.00 41.92 3.18
1457 1512 8.725148 CATGCTAGATACATCCATTTAAGGAAC 58.275 37.037 0.00 0.00 41.92 3.62
1458 1513 8.659527 TCATGCTAGATACATCCATTTAAGGAA 58.340 33.333 0.00 0.00 41.92 3.36
1459 1514 8.206126 TCATGCTAGATACATCCATTTAAGGA 57.794 34.615 0.00 0.00 43.01 3.36
1460 1515 8.853077 TTCATGCTAGATACATCCATTTAAGG 57.147 34.615 0.00 0.00 0.00 2.69
1461 1516 9.499479 ACTTCATGCTAGATACATCCATTTAAG 57.501 33.333 0.00 0.00 0.00 1.85
1462 1517 9.851686 AACTTCATGCTAGATACATCCATTTAA 57.148 29.630 0.00 0.00 0.00 1.52
1464 1519 9.499479 CTAACTTCATGCTAGATACATCCATTT 57.501 33.333 0.00 0.00 0.00 2.32
1465 1520 8.654997 ACTAACTTCATGCTAGATACATCCATT 58.345 33.333 0.00 0.00 0.00 3.16
1466 1521 8.093307 CACTAACTTCATGCTAGATACATCCAT 58.907 37.037 0.00 0.00 0.00 3.41
1467 1522 7.436933 CACTAACTTCATGCTAGATACATCCA 58.563 38.462 0.00 0.00 0.00 3.41
1468 1523 6.367422 GCACTAACTTCATGCTAGATACATCC 59.633 42.308 0.00 0.00 36.40 3.51
1469 1524 7.344910 GCACTAACTTCATGCTAGATACATC 57.655 40.000 0.00 0.00 36.40 3.06
1479 1534 8.300286 TGACTATATCTAGCACTAACTTCATGC 58.700 37.037 0.00 0.00 39.74 4.06
1510 1565 5.163652 CCTCAGTCCGAAAAAGTTTGTCTTT 60.164 40.000 4.29 0.00 46.86 2.52
1511 1566 4.335594 CCTCAGTCCGAAAAAGTTTGTCTT 59.664 41.667 4.29 0.00 38.10 3.01
1512 1567 3.877508 CCTCAGTCCGAAAAAGTTTGTCT 59.122 43.478 4.29 0.00 0.00 3.41
1513 1568 3.003378 CCCTCAGTCCGAAAAAGTTTGTC 59.997 47.826 0.00 0.00 0.00 3.18
1514 1569 2.949644 CCCTCAGTCCGAAAAAGTTTGT 59.050 45.455 0.00 0.00 0.00 2.83
1515 1570 3.211045 TCCCTCAGTCCGAAAAAGTTTG 58.789 45.455 0.00 0.00 0.00 2.93
1516 1571 3.118000 ACTCCCTCAGTCCGAAAAAGTTT 60.118 43.478 0.00 0.00 0.00 2.66
1517 1572 2.438392 ACTCCCTCAGTCCGAAAAAGTT 59.562 45.455 0.00 0.00 0.00 2.66
1518 1573 2.047830 ACTCCCTCAGTCCGAAAAAGT 58.952 47.619 0.00 0.00 0.00 2.66
1519 1574 2.841442 ACTCCCTCAGTCCGAAAAAG 57.159 50.000 0.00 0.00 0.00 2.27
1520 1575 2.301009 GGTACTCCCTCAGTCCGAAAAA 59.699 50.000 0.00 0.00 36.43 1.94
1521 1576 1.897802 GGTACTCCCTCAGTCCGAAAA 59.102 52.381 0.00 0.00 36.43 2.29
1522 1577 1.076677 AGGTACTCCCTCAGTCCGAAA 59.923 52.381 0.00 0.00 40.71 3.46
1523 1578 0.702902 AGGTACTCCCTCAGTCCGAA 59.297 55.000 0.00 0.00 40.71 4.30
1524 1579 0.702902 AAGGTACTCCCTCAGTCCGA 59.297 55.000 0.00 0.00 45.47 4.55
1525 1580 1.558233 AAAGGTACTCCCTCAGTCCG 58.442 55.000 0.00 0.00 45.47 4.79
1543 1598 2.740506 AGAAACACCCCGGAGAAAAA 57.259 45.000 0.73 0.00 0.00 1.94
1552 1607 7.043258 CGTTACAAACAAATAAAGAAACACCCC 60.043 37.037 0.00 0.00 0.00 4.95
1561 1616 9.537848 GAGGATGTACGTTACAAACAAATAAAG 57.462 33.333 0.00 0.00 42.76 1.85
1605 1676 4.233005 GTTAGGTTTGTCTAGACGTGGAC 58.767 47.826 17.85 12.40 34.78 4.02
1622 1693 5.925969 CCTTGCCAAATTACTTTGTGTTAGG 59.074 40.000 5.01 3.04 40.15 2.69
1691 1927 8.474006 AACCTAAATTAATTGCCTTAAAAGCG 57.526 30.769 0.39 0.00 33.15 4.68
1752 3170 4.201910 CGGGACAAATCAGATACGCATTTT 60.202 41.667 0.00 0.00 0.00 1.82
1770 3226 0.442699 GTTGATTGCTTCGTCGGGAC 59.557 55.000 0.00 0.00 0.00 4.46
1774 3230 3.253371 AGTTTGTTGATTGCTTCGTCG 57.747 42.857 0.00 0.00 0.00 5.12
1802 3258 0.176680 AGTGCAGCGGATCGAAGAAT 59.823 50.000 0.00 0.00 43.58 2.40
1894 3672 8.731605 TCCGCATGTAGACAAATAAAACAAATA 58.268 29.630 0.00 0.00 0.00 1.40
1895 3673 7.598278 TCCGCATGTAGACAAATAAAACAAAT 58.402 30.769 0.00 0.00 0.00 2.32
1896 3674 6.971602 TCCGCATGTAGACAAATAAAACAAA 58.028 32.000 0.00 0.00 0.00 2.83
1897 3675 6.561737 TCCGCATGTAGACAAATAAAACAA 57.438 33.333 0.00 0.00 0.00 2.83
1898 3676 6.150307 ACATCCGCATGTAGACAAATAAAACA 59.850 34.615 0.00 0.00 41.81 2.83
1899 3677 6.551736 ACATCCGCATGTAGACAAATAAAAC 58.448 36.000 0.00 0.00 41.81 2.43
1900 3678 6.751514 ACATCCGCATGTAGACAAATAAAA 57.248 33.333 0.00 0.00 41.81 1.52
1901 3679 7.931407 AGATACATCCGCATGTAGACAAATAAA 59.069 33.333 5.28 0.00 46.52 1.40
1902 3680 7.441836 AGATACATCCGCATGTAGACAAATAA 58.558 34.615 5.28 0.00 46.52 1.40
1935 3909 1.574702 CCCCGTCCTGAAAAAGTCGC 61.575 60.000 0.00 0.00 0.00 5.19
1940 3914 2.281900 CCGCCCCGTCCTGAAAAA 60.282 61.111 0.00 0.00 0.00 1.94
1951 3925 2.446036 ACATACTCCCTCCGCCCC 60.446 66.667 0.00 0.00 0.00 5.80
1952 3926 0.178970 TAGACATACTCCCTCCGCCC 60.179 60.000 0.00 0.00 0.00 6.13
1954 3928 1.984066 ACTAGACATACTCCCTCCGC 58.016 55.000 0.00 0.00 0.00 5.54
2034 4791 4.858850 TCCATCATCACCTGCAAAATACT 58.141 39.130 0.00 0.00 0.00 2.12
2067 4824 3.175152 CTCGTCACAGTACAAGATGAGC 58.825 50.000 14.45 0.00 38.24 4.26
2248 5016 5.726397 CCAGATTCTTTCATGCCATTTGAA 58.274 37.500 0.00 0.00 0.00 2.69
2445 5249 9.638176 AGATGAAATGAGAGTAGCCAATTAATT 57.362 29.630 0.00 0.00 0.00 1.40
2480 5284 0.609131 ATTGTGAAACCTGGGAGGCG 60.609 55.000 0.00 0.00 39.63 5.52
2519 5355 5.270853 ACAAGTGTTTTACGCAAAGATGAC 58.729 37.500 0.00 0.00 0.00 3.06
2611 5615 2.947127 AGCAAGGAGGCATAAGGATC 57.053 50.000 0.00 0.00 35.83 3.36
2665 5676 7.760131 TTCCACTATACATAAAGCGTAACAC 57.240 36.000 0.00 0.00 0.00 3.32
2756 5768 1.135315 CGCTTCATGCAGGAAACGG 59.865 57.895 24.62 11.05 43.06 4.44
2921 5941 5.911178 TGGGAATATGGGATCACTTACTCTT 59.089 40.000 0.00 0.00 0.00 2.85
2963 5989 6.260663 TGCTTCCTAATAATGGGAAAAAGGT 58.739 36.000 0.00 0.00 44.59 3.50
3001 6031 7.226128 TGCAGCAAAAACATGTGATTTTATGAA 59.774 29.630 16.67 9.00 30.49 2.57
3221 6278 1.767759 AAGGCAGCATTGGTCATACC 58.232 50.000 0.00 0.00 39.22 2.73
3290 6347 3.247648 TGTTTTCAGTTTACGCAGAGAGC 59.752 43.478 0.00 0.00 40.87 4.09
3313 6370 1.344942 CTGAACGGCTGACTGCGTAC 61.345 60.000 0.00 0.00 44.05 3.67
3317 6374 2.358003 AGCTGAACGGCTGACTGC 60.358 61.111 7.37 8.74 41.43 4.40
3327 6384 1.093159 CATGCTCTTCCCAGCTGAAC 58.907 55.000 17.39 0.00 40.39 3.18
3389 6446 6.924060 CCCTTTGTTTCGTACCATCTCTATAG 59.076 42.308 0.00 0.00 0.00 1.31
3500 6557 1.676006 CAACAAACCCCAGACAGTCAC 59.324 52.381 2.66 0.00 0.00 3.67
3509 6566 0.470833 CATGGACCCAACAAACCCCA 60.471 55.000 0.00 0.00 0.00 4.96
3514 6571 0.387202 CGTTGCATGGACCCAACAAA 59.613 50.000 12.47 0.00 40.93 2.83
3522 6579 0.958382 TACCAAGGCGTTGCATGGAC 60.958 55.000 13.63 0.00 38.69 4.02
3529 6586 1.472480 CCAAGGAATACCAAGGCGTTG 59.528 52.381 12.17 12.17 38.94 4.10
3540 6597 1.659022 TGAACCCCGACCAAGGAATA 58.341 50.000 0.00 0.00 0.00 1.75
3709 6766 6.803807 GCATAAAGTTCAGGTTTCTTCATGTC 59.196 38.462 0.00 0.00 0.00 3.06
3738 6795 5.268387 AGAGTATGTGAGATGGTGAAGTCT 58.732 41.667 0.00 0.00 0.00 3.24
3777 6834 2.222886 GCACACACATGCAGAGATAACG 60.223 50.000 0.00 0.00 45.39 3.18
3931 6988 7.280205 GGAAGTATGTACTAAAATGTCCACCAG 59.720 40.741 0.00 0.00 34.99 4.00
3994 7080 3.198489 TCACAGCAACGCGCAACA 61.198 55.556 5.73 0.00 46.13 3.33
3995 7081 2.722188 GTCACAGCAACGCGCAAC 60.722 61.111 5.73 0.00 46.13 4.17
4039 7132 6.503589 AGTTTTAGTTGTTTGTGTAGCACA 57.496 33.333 0.00 0.00 43.02 4.57
4152 7246 4.037446 CCTGCTTGTCTCTCACTATAGTCC 59.963 50.000 1.26 0.00 0.00 3.85
4158 7252 3.162147 AGTCCTGCTTGTCTCTCACTA 57.838 47.619 0.00 0.00 0.00 2.74
4272 7367 2.193248 GATGGCGGAAGGGGGAAG 59.807 66.667 0.00 0.00 0.00 3.46
4284 7379 4.152625 GTGCACGCTGACGATGGC 62.153 66.667 0.00 0.00 43.93 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.