Multiple sequence alignment - TraesCS5B01G360800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G360800 chr5B 100.000 3347 0 0 1 3347 540731556 540734902 0.000000e+00 6181.0
1 TraesCS5B01G360800 chr5B 88.324 1927 185 25 1001 2917 540873039 540871143 0.000000e+00 2276.0
2 TraesCS5B01G360800 chr5B 98.551 1035 7 1 1893 2927 540512406 540513432 0.000000e+00 1821.0
3 TraesCS5B01G360800 chr5B 92.221 1067 68 2 807 1858 540511339 540512405 0.000000e+00 1496.0
4 TraesCS5B01G360800 chr5B 83.154 1490 211 18 1076 2555 540689615 540691074 0.000000e+00 1325.0
5 TraesCS5B01G360800 chr5B 79.827 347 29 16 3039 3344 540513431 540513777 7.270000e-52 215.0
6 TraesCS5B01G360800 chr5B 89.933 149 15 0 3199 3347 540871013 540870865 3.410000e-45 193.0
7 TraesCS5B01G360800 chr5B 97.872 47 1 0 3153 3199 540871088 540871042 7.700000e-12 82.4
8 TraesCS5B01G360800 chr5D 92.936 1996 129 8 657 2642 444065458 444067451 0.000000e+00 2894.0
9 TraesCS5B01G360800 chr5D 92.695 397 20 3 248 642 444065083 444065472 6.270000e-157 564.0
10 TraesCS5B01G360800 chr5D 90.323 248 22 2 1 247 27831591 27831837 1.160000e-84 324.0
11 TraesCS5B01G360800 chr5D 86.631 187 12 2 3026 3199 444067877 444068063 9.480000e-46 195.0
12 TraesCS5B01G360800 chr5D 91.398 93 8 0 3199 3291 444068092 444068184 9.750000e-26 128.0
13 TraesCS5B01G360800 chr5D 97.368 38 1 0 2685 2722 444067527 444067564 7.750000e-07 65.8
14 TraesCS5B01G360800 chr5A 93.071 1068 59 8 886 1953 560808470 560809522 0.000000e+00 1548.0
15 TraesCS5B01G360800 chr5A 84.339 1028 138 18 1533 2555 560572849 560573858 0.000000e+00 985.0
16 TraesCS5B01G360800 chr5A 93.797 403 25 0 1951 2353 560827398 560827800 1.030000e-169 606.0
17 TraesCS5B01G360800 chr5A 78.153 563 57 26 2362 2903 560834178 560834695 7.020000e-77 298.0
18 TraesCS5B01G360800 chr5A 89.873 237 12 3 665 889 560808013 560808249 9.080000e-76 294.0
19 TraesCS5B01G360800 chr5A 78.706 371 30 13 3026 3347 560834859 560835229 5.660000e-48 202.0
20 TraesCS5B01G360800 chr7D 94.332 247 14 0 1 247 617596620 617596374 2.440000e-101 379.0
21 TraesCS5B01G360800 chr2B 86.817 311 39 2 2042 2351 790243892 790244201 2.470000e-91 346.0
22 TraesCS5B01G360800 chr2B 90.763 249 21 2 1 248 794746980 794747227 6.920000e-87 331.0
23 TraesCS5B01G360800 chr2B 89.113 248 25 2 1 247 28872249 28872495 1.170000e-79 307.0
24 TraesCS5B01G360800 chrUn 89.723 253 24 2 1 252 111371893 111372144 4.170000e-84 322.0
25 TraesCS5B01G360800 chr1B 89.960 249 25 0 1 249 683152991 683152743 4.170000e-84 322.0
26 TraesCS5B01G360800 chr6B 89.919 248 23 2 1 247 704787631 704787877 5.390000e-83 318.0
27 TraesCS5B01G360800 chr1D 89.243 251 25 2 5 254 468089785 468090034 2.510000e-81 313.0
28 TraesCS5B01G360800 chr7B 89.113 248 25 2 1 247 525928671 525928425 1.170000e-79 307.0
29 TraesCS5B01G360800 chr7B 100.000 28 0 0 3086 3113 8364108 8364135 6.000000e-03 52.8
30 TraesCS5B01G360800 chr7A 100.000 28 0 0 3086 3113 71047141 71047168 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G360800 chr5B 540731556 540734902 3346 False 6181.000000 6181 100.000000 1 3347 1 chr5B.!!$F2 3346
1 TraesCS5B01G360800 chr5B 540689615 540691074 1459 False 1325.000000 1325 83.154000 1076 2555 1 chr5B.!!$F1 1479
2 TraesCS5B01G360800 chr5B 540511339 540513777 2438 False 1177.333333 1821 90.199667 807 3344 3 chr5B.!!$F3 2537
3 TraesCS5B01G360800 chr5B 540870865 540873039 2174 True 850.466667 2276 92.043000 1001 3347 3 chr5B.!!$R1 2346
4 TraesCS5B01G360800 chr5D 444065083 444068184 3101 False 769.360000 2894 92.205600 248 3291 5 chr5D.!!$F2 3043
5 TraesCS5B01G360800 chr5A 560572849 560573858 1009 False 985.000000 985 84.339000 1533 2555 1 chr5A.!!$F1 1022
6 TraesCS5B01G360800 chr5A 560808013 560809522 1509 False 921.000000 1548 91.472000 665 1953 2 chr5A.!!$F3 1288
7 TraesCS5B01G360800 chr5A 560834178 560835229 1051 False 250.000000 298 78.429500 2362 3347 2 chr5A.!!$F4 985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.031721 CCCGCCCGTATGAGAGTAAC 59.968 60.0 0.00 0.00 0.00 2.50 F
239 240 0.032952 AAAACGTCGCACAGGAGCTA 59.967 50.0 0.00 0.00 0.00 3.32 F
1294 1548 0.176219 CGAGTACGGGCCCAACAATA 59.824 55.0 24.92 2.33 35.72 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 1547 0.325860 AGGGACAATACAGGGCGGTA 60.326 55.0 0.00 0.00 0.0 4.02 R
1622 1878 1.086696 GATTACCACAGTGCATGCGT 58.913 50.0 14.09 6.04 0.0 5.24 R
2797 3155 0.179116 CTGCTGGACTCTGTGGATCG 60.179 60.0 0.00 0.00 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.650912 CTAATGAGCACGGGCATGC 59.349 57.895 14.57 9.90 46.50 4.06
25 26 3.673484 GCACGGGCATGCTTGTGT 61.673 61.111 29.86 17.33 42.62 3.72
26 27 2.256158 CACGGGCATGCTTGTGTG 59.744 61.111 25.08 19.83 0.00 3.82
27 28 2.985282 ACGGGCATGCTTGTGTGG 60.985 61.111 18.92 1.94 0.00 4.17
28 29 2.672651 CGGGCATGCTTGTGTGGA 60.673 61.111 18.92 0.00 0.00 4.02
29 30 2.048023 CGGGCATGCTTGTGTGGAT 61.048 57.895 18.92 0.00 0.00 3.41
30 31 0.747644 CGGGCATGCTTGTGTGGATA 60.748 55.000 18.92 0.00 0.00 2.59
31 32 1.473258 GGGCATGCTTGTGTGGATAA 58.527 50.000 18.92 0.00 0.00 1.75
32 33 1.406539 GGGCATGCTTGTGTGGATAAG 59.593 52.381 18.92 0.00 0.00 1.73
33 34 2.094675 GGCATGCTTGTGTGGATAAGT 58.905 47.619 18.92 0.00 0.00 2.24
34 35 2.493278 GGCATGCTTGTGTGGATAAGTT 59.507 45.455 18.92 0.00 0.00 2.66
35 36 3.504863 GCATGCTTGTGTGGATAAGTTG 58.495 45.455 11.37 0.00 0.00 3.16
36 37 3.057315 GCATGCTTGTGTGGATAAGTTGT 60.057 43.478 11.37 0.00 0.00 3.32
37 38 4.478699 CATGCTTGTGTGGATAAGTTGTG 58.521 43.478 0.00 0.00 0.00 3.33
38 39 2.884012 TGCTTGTGTGGATAAGTTGTGG 59.116 45.455 0.00 0.00 0.00 4.17
39 40 2.228822 GCTTGTGTGGATAAGTTGTGGG 59.771 50.000 0.00 0.00 0.00 4.61
40 41 3.486383 CTTGTGTGGATAAGTTGTGGGT 58.514 45.455 0.00 0.00 0.00 4.51
41 42 3.134574 TGTGTGGATAAGTTGTGGGTC 57.865 47.619 0.00 0.00 0.00 4.46
42 43 2.224670 TGTGTGGATAAGTTGTGGGTCC 60.225 50.000 0.00 0.00 0.00 4.46
43 44 1.353022 TGTGGATAAGTTGTGGGTCCC 59.647 52.381 0.00 0.00 0.00 4.46
44 45 0.616371 TGGATAAGTTGTGGGTCCCG 59.384 55.000 2.65 0.00 0.00 5.14
45 46 0.746923 GGATAAGTTGTGGGTCCCGC 60.747 60.000 15.15 15.15 34.12 6.13
46 47 0.746923 GATAAGTTGTGGGTCCCGCC 60.747 60.000 19.15 4.27 32.22 6.13
55 56 2.836360 GGTCCCGCCCGTATGAGA 60.836 66.667 0.00 0.00 0.00 3.27
56 57 2.728817 GTCCCGCCCGTATGAGAG 59.271 66.667 0.00 0.00 0.00 3.20
57 58 2.125961 GTCCCGCCCGTATGAGAGT 61.126 63.158 0.00 0.00 0.00 3.24
58 59 0.820891 GTCCCGCCCGTATGAGAGTA 60.821 60.000 0.00 0.00 0.00 2.59
59 60 0.106569 TCCCGCCCGTATGAGAGTAA 60.107 55.000 0.00 0.00 0.00 2.24
60 61 0.031721 CCCGCCCGTATGAGAGTAAC 59.968 60.000 0.00 0.00 0.00 2.50
61 62 1.030457 CCGCCCGTATGAGAGTAACT 58.970 55.000 0.00 0.00 0.00 2.24
62 63 1.269102 CCGCCCGTATGAGAGTAACTG 60.269 57.143 0.00 0.00 0.00 3.16
63 64 1.269102 CGCCCGTATGAGAGTAACTGG 60.269 57.143 0.00 0.00 0.00 4.00
64 65 1.755380 GCCCGTATGAGAGTAACTGGT 59.245 52.381 0.00 0.00 0.00 4.00
65 66 2.481449 GCCCGTATGAGAGTAACTGGTG 60.481 54.545 0.00 0.00 0.00 4.17
66 67 2.100916 CCCGTATGAGAGTAACTGGTGG 59.899 54.545 0.00 0.00 0.00 4.61
67 68 2.100916 CCGTATGAGAGTAACTGGTGGG 59.899 54.545 0.00 0.00 0.00 4.61
68 69 2.758979 CGTATGAGAGTAACTGGTGGGT 59.241 50.000 0.00 0.00 0.00 4.51
69 70 3.181489 CGTATGAGAGTAACTGGTGGGTC 60.181 52.174 0.00 0.00 0.00 4.46
70 71 1.640917 TGAGAGTAACTGGTGGGTCC 58.359 55.000 0.00 0.00 0.00 4.46
71 72 0.903236 GAGAGTAACTGGTGGGTCCC 59.097 60.000 0.00 0.00 34.77 4.46
72 73 0.903454 AGAGTAACTGGTGGGTCCCG 60.903 60.000 2.65 0.00 34.77 5.14
73 74 2.046604 GTAACTGGTGGGTCCCGC 60.047 66.667 13.61 13.61 34.77 6.13
74 75 3.697747 TAACTGGTGGGTCCCGCG 61.698 66.667 15.47 0.00 34.37 6.46
80 81 4.388499 GTGGGTCCCGCGTGTCAT 62.388 66.667 5.50 0.00 0.00 3.06
81 82 2.680707 TGGGTCCCGCGTGTCATA 60.681 61.111 4.92 0.00 0.00 2.15
82 83 2.284276 TGGGTCCCGCGTGTCATAA 61.284 57.895 4.92 0.00 0.00 1.90
83 84 1.812507 GGGTCCCGCGTGTCATAAC 60.813 63.158 4.92 0.00 0.00 1.89
84 85 1.217244 GGTCCCGCGTGTCATAACT 59.783 57.895 4.92 0.00 0.00 2.24
85 86 0.804933 GGTCCCGCGTGTCATAACTC 60.805 60.000 4.92 0.00 0.00 3.01
86 87 0.108992 GTCCCGCGTGTCATAACTCA 60.109 55.000 4.92 0.00 0.00 3.41
87 88 0.604073 TCCCGCGTGTCATAACTCAA 59.396 50.000 4.92 0.00 0.00 3.02
88 89 1.001068 TCCCGCGTGTCATAACTCAAA 59.999 47.619 4.92 0.00 0.00 2.69
89 90 2.006888 CCCGCGTGTCATAACTCAAAT 58.993 47.619 4.92 0.00 0.00 2.32
90 91 2.030457 CCCGCGTGTCATAACTCAAATC 59.970 50.000 4.92 0.00 0.00 2.17
91 92 2.285026 CCGCGTGTCATAACTCAAATCG 60.285 50.000 4.92 0.00 0.00 3.34
92 93 2.694043 GCGTGTCATAACTCAAATCGC 58.306 47.619 0.00 0.00 34.93 4.58
93 94 2.348666 GCGTGTCATAACTCAAATCGCT 59.651 45.455 0.00 0.00 38.46 4.93
94 95 3.550275 GCGTGTCATAACTCAAATCGCTA 59.450 43.478 0.00 0.00 38.46 4.26
95 96 4.032445 GCGTGTCATAACTCAAATCGCTAA 59.968 41.667 0.00 0.00 38.46 3.09
96 97 5.481472 CGTGTCATAACTCAAATCGCTAAC 58.519 41.667 0.00 0.00 0.00 2.34
97 98 5.500290 CGTGTCATAACTCAAATCGCTAACC 60.500 44.000 0.00 0.00 0.00 2.85
98 99 4.873827 TGTCATAACTCAAATCGCTAACCC 59.126 41.667 0.00 0.00 0.00 4.11
99 100 4.272748 GTCATAACTCAAATCGCTAACCCC 59.727 45.833 0.00 0.00 0.00 4.95
100 101 4.163458 TCATAACTCAAATCGCTAACCCCT 59.837 41.667 0.00 0.00 0.00 4.79
101 102 2.693267 ACTCAAATCGCTAACCCCTC 57.307 50.000 0.00 0.00 0.00 4.30
102 103 1.134788 ACTCAAATCGCTAACCCCTCG 60.135 52.381 0.00 0.00 0.00 4.63
103 104 0.899720 TCAAATCGCTAACCCCTCGT 59.100 50.000 0.00 0.00 0.00 4.18
104 105 1.006832 CAAATCGCTAACCCCTCGTG 58.993 55.000 0.00 0.00 0.00 4.35
105 106 0.611714 AAATCGCTAACCCCTCGTGT 59.388 50.000 0.00 0.00 0.00 4.49
106 107 0.611714 AATCGCTAACCCCTCGTGTT 59.388 50.000 0.00 0.00 0.00 3.32
107 108 0.611714 ATCGCTAACCCCTCGTGTTT 59.388 50.000 0.00 0.00 0.00 2.83
108 109 0.393820 TCGCTAACCCCTCGTGTTTT 59.606 50.000 0.00 0.00 0.00 2.43
109 110 0.515564 CGCTAACCCCTCGTGTTTTG 59.484 55.000 0.00 0.00 0.00 2.44
110 111 0.240145 GCTAACCCCTCGTGTTTTGC 59.760 55.000 0.00 0.00 0.00 3.68
111 112 1.600023 CTAACCCCTCGTGTTTTGCA 58.400 50.000 0.00 0.00 0.00 4.08
112 113 2.159382 CTAACCCCTCGTGTTTTGCAT 58.841 47.619 0.00 0.00 0.00 3.96
113 114 1.408969 AACCCCTCGTGTTTTGCATT 58.591 45.000 0.00 0.00 0.00 3.56
114 115 1.408969 ACCCCTCGTGTTTTGCATTT 58.591 45.000 0.00 0.00 0.00 2.32
115 116 1.339929 ACCCCTCGTGTTTTGCATTTC 59.660 47.619 0.00 0.00 0.00 2.17
116 117 1.339610 CCCCTCGTGTTTTGCATTTCA 59.660 47.619 0.00 0.00 0.00 2.69
117 118 2.029110 CCCCTCGTGTTTTGCATTTCAT 60.029 45.455 0.00 0.00 0.00 2.57
118 119 2.988493 CCCTCGTGTTTTGCATTTCATG 59.012 45.455 0.00 0.00 0.00 3.07
119 120 2.988493 CCTCGTGTTTTGCATTTCATGG 59.012 45.455 0.00 0.00 0.00 3.66
120 121 3.552684 CCTCGTGTTTTGCATTTCATGGT 60.553 43.478 0.00 0.00 0.00 3.55
121 122 4.050553 CTCGTGTTTTGCATTTCATGGTT 58.949 39.130 0.00 0.00 0.00 3.67
122 123 5.188327 TCGTGTTTTGCATTTCATGGTTA 57.812 34.783 0.00 0.00 0.00 2.85
123 124 5.592054 TCGTGTTTTGCATTTCATGGTTAA 58.408 33.333 0.00 0.00 0.00 2.01
124 125 6.042777 TCGTGTTTTGCATTTCATGGTTAAA 58.957 32.000 0.00 0.00 0.00 1.52
125 126 6.019479 TCGTGTTTTGCATTTCATGGTTAAAC 60.019 34.615 0.00 0.00 0.00 2.01
126 127 6.237942 CGTGTTTTGCATTTCATGGTTAAACA 60.238 34.615 0.00 0.00 33.39 2.83
127 128 7.125113 GTGTTTTGCATTTCATGGTTAAACAG 58.875 34.615 0.00 0.00 35.63 3.16
128 129 7.010923 GTGTTTTGCATTTCATGGTTAAACAGA 59.989 33.333 0.00 0.00 35.63 3.41
129 130 7.224362 TGTTTTGCATTTCATGGTTAAACAGAG 59.776 33.333 0.00 0.00 32.42 3.35
130 131 4.808558 TGCATTTCATGGTTAAACAGAGC 58.191 39.130 0.00 0.00 0.00 4.09
131 132 4.176271 GCATTTCATGGTTAAACAGAGCC 58.824 43.478 0.00 0.00 0.00 4.70
132 133 4.321899 GCATTTCATGGTTAAACAGAGCCA 60.322 41.667 0.00 0.00 35.28 4.75
133 134 5.625197 GCATTTCATGGTTAAACAGAGCCAT 60.625 40.000 0.00 0.00 41.92 4.40
137 138 2.422597 TGGTTAAACAGAGCCATGTCG 58.577 47.619 0.00 0.00 31.50 4.35
138 139 1.130561 GGTTAAACAGAGCCATGTCGC 59.869 52.381 0.00 0.00 31.50 5.19
139 140 1.804151 GTTAAACAGAGCCATGTCGCA 59.196 47.619 0.00 0.00 31.50 5.10
140 141 2.401583 TAAACAGAGCCATGTCGCAT 57.598 45.000 0.00 0.00 31.50 4.73
141 142 1.538047 AAACAGAGCCATGTCGCATT 58.462 45.000 0.00 0.00 31.50 3.56
142 143 0.806868 AACAGAGCCATGTCGCATTG 59.193 50.000 0.00 0.00 31.50 2.82
143 144 1.028330 ACAGAGCCATGTCGCATTGG 61.028 55.000 0.00 0.00 36.03 3.16
144 145 0.745486 CAGAGCCATGTCGCATTGGA 60.745 55.000 0.00 0.00 34.81 3.53
145 146 0.463295 AGAGCCATGTCGCATTGGAG 60.463 55.000 0.00 0.00 34.81 3.86
146 147 2.056481 GAGCCATGTCGCATTGGAGC 62.056 60.000 0.00 0.00 34.81 4.70
147 148 2.117156 GCCATGTCGCATTGGAGCT 61.117 57.895 0.00 0.00 34.81 4.09
148 149 0.815213 GCCATGTCGCATTGGAGCTA 60.815 55.000 0.00 0.00 34.81 3.32
149 150 1.888215 CCATGTCGCATTGGAGCTAT 58.112 50.000 0.00 0.00 34.81 2.97
150 151 2.871637 GCCATGTCGCATTGGAGCTATA 60.872 50.000 0.00 0.00 34.81 1.31
151 152 2.998670 CCATGTCGCATTGGAGCTATAG 59.001 50.000 0.00 0.00 34.81 1.31
152 153 3.555795 CCATGTCGCATTGGAGCTATAGT 60.556 47.826 0.84 0.00 34.81 2.12
153 154 3.819564 TGTCGCATTGGAGCTATAGTT 57.180 42.857 0.84 0.00 0.00 2.24
154 155 3.457234 TGTCGCATTGGAGCTATAGTTG 58.543 45.455 0.84 0.00 0.00 3.16
155 156 2.802816 GTCGCATTGGAGCTATAGTTGG 59.197 50.000 0.84 0.00 0.00 3.77
156 157 1.532868 CGCATTGGAGCTATAGTTGGC 59.467 52.381 0.84 0.00 0.00 4.52
157 158 2.808202 CGCATTGGAGCTATAGTTGGCT 60.808 50.000 0.84 0.00 43.20 4.75
158 159 3.217626 GCATTGGAGCTATAGTTGGCTT 58.782 45.455 0.84 0.00 40.17 4.35
159 160 3.004106 GCATTGGAGCTATAGTTGGCTTG 59.996 47.826 0.84 0.00 40.17 4.01
160 161 4.454678 CATTGGAGCTATAGTTGGCTTGA 58.545 43.478 0.84 0.00 40.17 3.02
161 162 4.568072 TTGGAGCTATAGTTGGCTTGAA 57.432 40.909 0.84 0.00 40.17 2.69
162 163 4.568072 TGGAGCTATAGTTGGCTTGAAA 57.432 40.909 0.84 0.00 40.17 2.69
163 164 4.517285 TGGAGCTATAGTTGGCTTGAAAG 58.483 43.478 0.84 0.00 40.17 2.62
164 165 4.225042 TGGAGCTATAGTTGGCTTGAAAGA 59.775 41.667 0.84 0.00 40.17 2.52
165 166 4.572795 GGAGCTATAGTTGGCTTGAAAGAC 59.427 45.833 0.84 0.00 40.17 3.01
166 167 4.184629 AGCTATAGTTGGCTTGAAAGACG 58.815 43.478 0.84 0.00 36.00 4.18
167 168 3.933332 GCTATAGTTGGCTTGAAAGACGT 59.067 43.478 0.84 0.00 36.62 4.34
168 169 4.033014 GCTATAGTTGGCTTGAAAGACGTC 59.967 45.833 7.70 7.70 36.62 4.34
169 170 1.217882 AGTTGGCTTGAAAGACGTCG 58.782 50.000 10.46 0.00 36.62 5.12
170 171 0.384353 GTTGGCTTGAAAGACGTCGC 60.384 55.000 10.46 6.10 36.62 5.19
171 172 0.812014 TTGGCTTGAAAGACGTCGCA 60.812 50.000 10.46 7.30 36.62 5.10
172 173 1.221466 TGGCTTGAAAGACGTCGCAG 61.221 55.000 10.46 4.20 36.62 5.18
173 174 1.493311 GCTTGAAAGACGTCGCAGG 59.507 57.895 10.46 11.26 0.00 4.85
174 175 0.944311 GCTTGAAAGACGTCGCAGGA 60.944 55.000 10.46 0.00 0.00 3.86
175 176 1.497991 CTTGAAAGACGTCGCAGGAA 58.502 50.000 10.46 0.19 0.00 3.36
176 177 1.864711 CTTGAAAGACGTCGCAGGAAA 59.135 47.619 10.46 0.94 0.00 3.13
177 178 1.497991 TGAAAGACGTCGCAGGAAAG 58.502 50.000 10.46 0.00 0.00 2.62
178 179 0.164002 GAAAGACGTCGCAGGAAAGC 59.836 55.000 10.46 0.00 0.00 3.51
179 180 0.249911 AAAGACGTCGCAGGAAAGCT 60.250 50.000 10.46 0.00 0.00 3.74
180 181 0.601558 AAGACGTCGCAGGAAAGCTA 59.398 50.000 10.46 0.00 0.00 3.32
181 182 0.818296 AGACGTCGCAGGAAAGCTAT 59.182 50.000 10.46 0.00 0.00 2.97
182 183 1.204941 AGACGTCGCAGGAAAGCTATT 59.795 47.619 10.46 0.00 0.00 1.73
183 184 2.000447 GACGTCGCAGGAAAGCTATTT 59.000 47.619 0.00 0.00 0.00 1.40
184 185 2.415512 GACGTCGCAGGAAAGCTATTTT 59.584 45.455 0.00 0.00 0.00 1.82
185 186 2.812011 ACGTCGCAGGAAAGCTATTTTT 59.188 40.909 0.00 0.00 0.00 1.94
186 187 3.163594 CGTCGCAGGAAAGCTATTTTTG 58.836 45.455 0.00 0.00 0.00 2.44
187 188 3.364964 CGTCGCAGGAAAGCTATTTTTGT 60.365 43.478 0.00 0.00 0.00 2.83
188 189 4.142988 CGTCGCAGGAAAGCTATTTTTGTA 60.143 41.667 0.00 0.00 0.00 2.41
189 190 5.615984 CGTCGCAGGAAAGCTATTTTTGTAA 60.616 40.000 0.00 0.00 0.00 2.41
190 191 6.146898 GTCGCAGGAAAGCTATTTTTGTAAA 58.853 36.000 0.00 0.00 0.00 2.01
191 192 6.087687 GTCGCAGGAAAGCTATTTTTGTAAAC 59.912 38.462 0.00 0.00 0.00 2.01
192 193 6.016610 TCGCAGGAAAGCTATTTTTGTAAACT 60.017 34.615 0.00 0.00 0.00 2.66
193 194 7.173562 TCGCAGGAAAGCTATTTTTGTAAACTA 59.826 33.333 0.00 0.00 0.00 2.24
194 195 7.270579 CGCAGGAAAGCTATTTTTGTAAACTAC 59.729 37.037 0.00 0.00 0.00 2.73
195 196 8.079809 GCAGGAAAGCTATTTTTGTAAACTACA 58.920 33.333 0.00 0.00 36.79 2.74
198 199 9.274065 GGAAAGCTATTTTTGTAAACTACATCG 57.726 33.333 0.00 0.00 38.68 3.84
199 200 8.669394 AAAGCTATTTTTGTAAACTACATCGC 57.331 30.769 0.00 0.00 38.68 4.58
200 201 7.372451 AGCTATTTTTGTAAACTACATCGCA 57.628 32.000 0.00 0.00 38.68 5.10
201 202 7.241376 AGCTATTTTTGTAAACTACATCGCAC 58.759 34.615 0.00 0.00 38.68 5.34
202 203 7.119262 AGCTATTTTTGTAAACTACATCGCACT 59.881 33.333 0.00 0.00 38.68 4.40
203 204 8.385111 GCTATTTTTGTAAACTACATCGCACTA 58.615 33.333 0.00 0.00 38.68 2.74
204 205 9.685005 CTATTTTTGTAAACTACATCGCACTAC 57.315 33.333 0.00 0.00 38.68 2.73
205 206 5.750484 TTTGTAAACTACATCGCACTACG 57.250 39.130 0.00 0.00 38.68 3.51
206 207 4.424061 TGTAAACTACATCGCACTACGT 57.576 40.909 0.00 0.00 37.07 3.57
207 208 5.544136 TGTAAACTACATCGCACTACGTA 57.456 39.130 0.00 0.00 37.07 3.57
208 209 5.323900 TGTAAACTACATCGCACTACGTAC 58.676 41.667 0.00 0.00 37.07 3.67
209 210 4.424061 AAACTACATCGCACTACGTACA 57.576 40.909 0.00 0.00 44.19 2.90
210 211 4.424061 AACTACATCGCACTACGTACAA 57.576 40.909 0.00 0.00 44.19 2.41
211 212 4.627611 ACTACATCGCACTACGTACAAT 57.372 40.909 0.00 0.00 44.19 2.71
212 213 4.990257 ACTACATCGCACTACGTACAATT 58.010 39.130 0.00 0.00 44.19 2.32
213 214 5.404946 ACTACATCGCACTACGTACAATTT 58.595 37.500 0.00 0.00 44.19 1.82
214 215 6.554419 ACTACATCGCACTACGTACAATTTA 58.446 36.000 0.00 0.00 44.19 1.40
215 216 5.691508 ACATCGCACTACGTACAATTTAC 57.308 39.130 0.00 0.00 44.19 2.01
216 217 5.162794 ACATCGCACTACGTACAATTTACA 58.837 37.500 0.00 0.00 44.19 2.41
217 218 5.808540 ACATCGCACTACGTACAATTTACAT 59.191 36.000 0.00 0.00 44.19 2.29
218 219 5.689927 TCGCACTACGTACAATTTACATG 57.310 39.130 0.00 0.00 44.19 3.21
219 220 5.400703 TCGCACTACGTACAATTTACATGA 58.599 37.500 0.00 0.00 44.19 3.07
220 221 5.862860 TCGCACTACGTACAATTTACATGAA 59.137 36.000 0.00 0.00 44.19 2.57
221 222 6.365518 TCGCACTACGTACAATTTACATGAAA 59.634 34.615 0.00 0.00 44.19 2.69
222 223 7.010606 CGCACTACGTACAATTTACATGAAAA 58.989 34.615 0.00 0.00 36.87 2.29
223 224 7.531198 CGCACTACGTACAATTTACATGAAAAA 59.469 33.333 0.00 0.00 36.87 1.94
224 225 8.624028 GCACTACGTACAATTTACATGAAAAAC 58.376 33.333 0.00 0.00 0.00 2.43
225 226 8.823840 CACTACGTACAATTTACATGAAAAACG 58.176 33.333 0.00 7.80 33.15 3.60
226 227 8.550376 ACTACGTACAATTTACATGAAAAACGT 58.450 29.630 0.00 12.17 38.54 3.99
227 228 7.825627 ACGTACAATTTACATGAAAAACGTC 57.174 32.000 0.00 0.00 34.17 4.34
228 229 6.570789 ACGTACAATTTACATGAAAAACGTCG 59.429 34.615 0.00 8.84 34.17 5.12
229 230 5.799542 ACAATTTACATGAAAAACGTCGC 57.200 34.783 0.00 0.00 0.00 5.19
230 231 5.274718 ACAATTTACATGAAAAACGTCGCA 58.725 33.333 0.00 0.00 0.00 5.10
231 232 5.172411 ACAATTTACATGAAAAACGTCGCAC 59.828 36.000 0.00 0.00 0.00 5.34
232 233 3.946308 TTACATGAAAAACGTCGCACA 57.054 38.095 0.00 0.00 0.00 4.57
233 234 2.383298 ACATGAAAAACGTCGCACAG 57.617 45.000 0.00 0.00 0.00 3.66
234 235 1.002900 ACATGAAAAACGTCGCACAGG 60.003 47.619 0.00 0.00 0.00 4.00
235 236 1.262950 CATGAAAAACGTCGCACAGGA 59.737 47.619 0.00 0.00 0.00 3.86
236 237 0.934496 TGAAAAACGTCGCACAGGAG 59.066 50.000 0.00 0.00 0.00 3.69
237 238 0.384353 GAAAAACGTCGCACAGGAGC 60.384 55.000 0.00 0.00 0.00 4.70
238 239 0.814010 AAAAACGTCGCACAGGAGCT 60.814 50.000 0.00 0.00 0.00 4.09
239 240 0.032952 AAAACGTCGCACAGGAGCTA 59.967 50.000 0.00 0.00 0.00 3.32
240 241 0.246635 AAACGTCGCACAGGAGCTAT 59.753 50.000 0.00 0.00 0.00 2.97
241 242 0.246635 AACGTCGCACAGGAGCTATT 59.753 50.000 0.00 0.00 0.00 1.73
242 243 0.458543 ACGTCGCACAGGAGCTATTG 60.459 55.000 0.00 0.00 0.00 1.90
243 244 1.148157 CGTCGCACAGGAGCTATTGG 61.148 60.000 0.00 0.00 0.00 3.16
244 245 1.153369 TCGCACAGGAGCTATTGGC 60.153 57.895 0.00 0.00 42.19 4.52
245 246 2.182842 CGCACAGGAGCTATTGGCC 61.183 63.158 0.00 0.00 43.05 5.36
246 247 1.825622 GCACAGGAGCTATTGGCCC 60.826 63.158 0.00 0.00 43.05 5.80
291 292 0.671251 GTGCCCGTGGATTTGTTTGA 59.329 50.000 0.00 0.00 0.00 2.69
296 297 1.335506 CCGTGGATTTGTTTGAACCGG 60.336 52.381 0.00 0.00 0.00 5.28
326 327 4.261801 ACGGATACAGGGTTCATTTTGAG 58.738 43.478 0.00 0.00 0.00 3.02
356 357 1.523938 GAGATGCCCTTACGTGCCC 60.524 63.158 0.00 0.00 0.00 5.36
357 358 2.895372 GATGCCCTTACGTGCCCG 60.895 66.667 0.00 0.00 40.83 6.13
358 359 4.483243 ATGCCCTTACGTGCCCGG 62.483 66.667 0.00 0.00 38.78 5.73
360 361 4.710167 GCCCTTACGTGCCCGGTT 62.710 66.667 0.00 0.00 38.78 4.44
361 362 2.980475 CCCTTACGTGCCCGGTTA 59.020 61.111 0.00 0.00 38.78 2.85
362 363 1.448365 CCCTTACGTGCCCGGTTAC 60.448 63.158 0.00 0.00 38.78 2.50
375 376 2.223548 CCCGGTTACATGCATGTGATTG 60.224 50.000 36.72 24.68 41.89 2.67
376 377 2.682352 CCGGTTACATGCATGTGATTGA 59.318 45.455 36.72 17.91 41.89 2.57
391 392 5.493809 TGTGATTGATGCAGATGAAGAGAA 58.506 37.500 0.00 0.00 0.00 2.87
437 439 3.469008 AGAGAAAATGTGGTCACGTGA 57.531 42.857 15.76 15.76 0.00 4.35
459 461 2.125961 GGCGTATCCGGGTGAGACT 61.126 63.158 0.00 0.00 32.91 3.24
462 464 1.663379 CGTATCCGGGTGAGACTGCA 61.663 60.000 0.00 0.00 32.91 4.41
513 515 6.112734 TGTGAATATAAGAGTTTGCGGACAT 58.887 36.000 0.00 0.00 0.00 3.06
514 516 7.269316 TGTGAATATAAGAGTTTGCGGACATA 58.731 34.615 0.00 0.00 0.00 2.29
516 518 6.704493 TGAATATAAGAGTTTGCGGACATACC 59.296 38.462 0.00 0.00 0.00 2.73
549 551 4.705991 GGACTAATAGAGGGGTCCGATTAG 59.294 50.000 0.00 0.00 38.77 1.73
586 589 3.009916 TCTCTCTTGTCCGGGTACTTACT 59.990 47.826 0.00 0.00 0.00 2.24
587 590 3.087031 TCTCTTGTCCGGGTACTTACTG 58.913 50.000 0.00 0.00 0.00 2.74
608 611 2.302733 GGGCATGTTTGTGGAGGATTTT 59.697 45.455 0.00 0.00 0.00 1.82
611 614 4.381932 GGCATGTTTGTGGAGGATTTTAGG 60.382 45.833 0.00 0.00 0.00 2.69
628 631 2.768046 GGGGACCGGCCATAGATAA 58.232 57.895 15.49 0.00 40.86 1.75
629 632 1.286248 GGGGACCGGCCATAGATAAT 58.714 55.000 15.49 0.00 40.86 1.28
630 633 1.209747 GGGGACCGGCCATAGATAATC 59.790 57.143 15.49 0.00 40.86 1.75
631 634 2.188817 GGGACCGGCCATAGATAATCT 58.811 52.381 15.49 0.00 38.95 2.40
632 635 2.572104 GGGACCGGCCATAGATAATCTT 59.428 50.000 15.49 0.00 38.95 2.40
633 636 3.773119 GGGACCGGCCATAGATAATCTTA 59.227 47.826 15.49 0.00 38.95 2.10
634 637 4.409247 GGGACCGGCCATAGATAATCTTAT 59.591 45.833 15.49 0.00 38.95 1.73
635 638 5.601313 GGGACCGGCCATAGATAATCTTATA 59.399 44.000 15.49 0.00 38.95 0.98
636 639 6.099269 GGGACCGGCCATAGATAATCTTATAA 59.901 42.308 15.49 0.00 38.95 0.98
637 640 7.202102 GGGACCGGCCATAGATAATCTTATAAT 60.202 40.741 15.49 0.00 38.95 1.28
638 641 8.867097 GGACCGGCCATAGATAATCTTATAATA 58.133 37.037 0.00 0.00 36.34 0.98
672 675 7.490962 TGCGGGTGAATCTAATAATAACTTG 57.509 36.000 0.00 0.00 0.00 3.16
676 679 7.713507 CGGGTGAATCTAATAATAACTTGGTGA 59.286 37.037 0.00 0.00 0.00 4.02
710 719 4.092237 CGGATCGATCTAGTACTAGCACAG 59.908 50.000 23.96 14.21 33.32 3.66
720 729 1.589993 CTAGCACAGACGCGATGGG 60.590 63.158 15.93 14.01 36.85 4.00
776 785 9.525409 CTTCCTTGCCTGATTTATTATCAAAAG 57.475 33.333 0.00 0.00 0.00 2.27
777 786 8.821686 TCCTTGCCTGATTTATTATCAAAAGA 57.178 30.769 0.00 0.00 0.00 2.52
816 826 7.239143 TGGATCACCTAGCTAGTAAGTAGGATA 59.761 40.741 19.31 0.00 37.38 2.59
842 852 2.681848 GACCTAGACAACTCGATCGGAA 59.318 50.000 16.41 0.00 0.00 4.30
859 869 3.136808 GGAAACAATCCGTGCTCAATC 57.863 47.619 0.00 0.00 38.79 2.67
860 870 2.476185 GGAAACAATCCGTGCTCAATCG 60.476 50.000 0.00 0.00 38.79 3.34
1024 1278 1.203441 AGCAGCCTTGTCCATCTCCA 61.203 55.000 0.00 0.00 0.00 3.86
1044 1298 2.202623 GTCGACGCACTAGCCAGG 60.203 66.667 0.00 0.00 37.52 4.45
1057 1311 1.377202 GCCAGGGCGATCAAGAACA 60.377 57.895 0.00 0.00 0.00 3.18
1059 1313 1.533625 CCAGGGCGATCAAGAACAAA 58.466 50.000 0.00 0.00 0.00 2.83
1061 1315 2.154462 CAGGGCGATCAAGAACAAAGT 58.846 47.619 0.00 0.00 0.00 2.66
1064 1318 1.595609 GCGATCAAGAACAAAGTGCG 58.404 50.000 0.00 0.00 0.00 5.34
1067 1321 2.718789 CGATCAAGAACAAAGTGCGTCG 60.719 50.000 0.00 0.00 0.00 5.12
1083 1337 3.870606 CGGAGGTGGTTAACTGCG 58.129 61.111 5.42 0.00 41.82 5.18
1293 1547 1.078708 CGAGTACGGGCCCAACAAT 60.079 57.895 24.92 4.47 35.72 2.71
1294 1548 0.176219 CGAGTACGGGCCCAACAATA 59.824 55.000 24.92 2.33 35.72 1.90
1317 1571 1.285280 CCCTGTATTGTCCCTCCACA 58.715 55.000 0.00 0.00 0.00 4.17
1399 1653 1.978455 TTGTCACGGCTGGGTGTTCT 61.978 55.000 0.00 0.00 39.00 3.01
1561 1817 0.464373 CAGATCCCACAACCCGATGG 60.464 60.000 0.00 0.00 35.59 3.51
1622 1878 2.490148 CCGCTGCCACCGAGATAGA 61.490 63.158 0.00 0.00 0.00 1.98
1837 2102 2.546584 CCGATGGTGACGATGATCATGT 60.547 50.000 14.30 11.43 0.00 3.21
1849 2114 1.338960 TGATCATGTGTGGCGTGTCAT 60.339 47.619 0.00 0.00 35.64 3.06
2793 3151 3.774702 GTGGAAGGCGTCGCGAAC 61.775 66.667 12.06 6.02 0.00 3.95
2794 3152 3.986006 TGGAAGGCGTCGCGAACT 61.986 61.111 12.06 6.93 0.00 3.01
2795 3153 3.179939 GGAAGGCGTCGCGAACTC 61.180 66.667 12.06 2.63 0.00 3.01
2796 3154 3.533691 GAAGGCGTCGCGAACTCG 61.534 66.667 12.06 12.41 43.27 4.18
2847 3205 2.420466 CTTTGCCCAAGTTCGTGCCC 62.420 60.000 0.00 0.00 0.00 5.36
2850 3208 2.742372 CCCAAGTTCGTGCCCGAG 60.742 66.667 0.00 0.00 45.24 4.63
2851 3209 2.342279 CCAAGTTCGTGCCCGAGA 59.658 61.111 0.00 0.00 45.24 4.04
2855 3213 2.744307 AAGTTCGTGCCCGAGACGAC 62.744 60.000 0.00 0.00 45.11 4.34
2926 3289 0.529773 AACTGCGCAAGAACACGAGA 60.530 50.000 13.05 0.00 43.02 4.04
2927 3290 0.941463 ACTGCGCAAGAACACGAGAG 60.941 55.000 13.05 0.00 43.02 3.20
2928 3291 0.664466 CTGCGCAAGAACACGAGAGA 60.664 55.000 13.05 0.00 43.02 3.10
2929 3292 0.664466 TGCGCAAGAACACGAGAGAG 60.664 55.000 8.16 0.00 43.02 3.20
2930 3293 0.387367 GCGCAAGAACACGAGAGAGA 60.387 55.000 0.30 0.00 43.02 3.10
2931 3294 1.332178 CGCAAGAACACGAGAGAGAC 58.668 55.000 0.00 0.00 43.02 3.36
2932 3295 1.068885 CGCAAGAACACGAGAGAGACT 60.069 52.381 0.00 0.00 43.02 3.24
2933 3296 2.605823 CGCAAGAACACGAGAGAGACTT 60.606 50.000 0.00 0.00 43.02 3.01
2938 3313 4.643463 AGAACACGAGAGAGACTTCTACA 58.357 43.478 0.00 0.00 32.53 2.74
2952 3340 8.578151 AGAGACTTCTACAACTTTTACCACTAG 58.422 37.037 0.00 0.00 0.00 2.57
2953 3341 8.247666 AGACTTCTACAACTTTTACCACTAGT 57.752 34.615 0.00 0.00 0.00 2.57
2964 3352 4.970662 TTACCACTAGTTATCGCTCGTT 57.029 40.909 0.00 0.00 0.00 3.85
2986 3387 0.041488 CGATCGCGACACCTAGTACC 60.041 60.000 12.93 0.00 40.82 3.34
2988 3389 1.402968 GATCGCGACACCTAGTACCAA 59.597 52.381 12.93 0.00 0.00 3.67
2993 3394 3.332034 GCGACACCTAGTACCAAATGTT 58.668 45.455 0.00 0.00 0.00 2.71
3222 3703 1.809684 GACCAAGGTGGAGTACAAGC 58.190 55.000 0.18 0.00 40.96 4.01
3230 3711 2.480845 GTGGAGTACAAGCTGTTCGTT 58.519 47.619 0.00 0.00 0.00 3.85
3255 3736 3.319198 ACGATGGCGGTTGGGTCT 61.319 61.111 0.00 0.00 43.17 3.85
3256 3737 2.046314 CGATGGCGGTTGGGTCTT 60.046 61.111 0.00 0.00 0.00 3.01
3300 3781 1.402852 CGCTCGTGAACATCTTCTCCA 60.403 52.381 0.00 0.00 0.00 3.86
3326 3807 3.323758 GATGCCGGTGTGCCCACTA 62.324 63.158 1.90 0.00 41.53 2.74
3328 3809 2.281900 GCCGGTGTGCCCACTAAA 60.282 61.111 1.90 0.00 41.53 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.650912 GCATGCCCGTGCTCATTAG 59.349 57.895 6.36 0.00 41.82 1.73
2 3 3.826221 GCATGCCCGTGCTCATTA 58.174 55.556 6.36 0.00 41.82 1.90
8 9 3.673484 ACACAAGCATGCCCGTGC 61.673 61.111 28.00 4.34 45.38 5.34
9 10 2.256158 CACACAAGCATGCCCGTG 59.744 61.111 26.98 26.98 35.48 4.94
10 11 2.769652 ATCCACACAAGCATGCCCGT 62.770 55.000 15.66 9.12 0.00 5.28
11 12 0.747644 TATCCACACAAGCATGCCCG 60.748 55.000 15.66 8.37 0.00 6.13
12 13 1.406539 CTTATCCACACAAGCATGCCC 59.593 52.381 15.66 0.00 0.00 5.36
13 14 2.094675 ACTTATCCACACAAGCATGCC 58.905 47.619 15.66 0.00 0.00 4.40
14 15 3.057315 ACAACTTATCCACACAAGCATGC 60.057 43.478 10.51 10.51 0.00 4.06
15 16 4.478699 CACAACTTATCCACACAAGCATG 58.521 43.478 0.00 0.00 0.00 4.06
16 17 3.507233 CCACAACTTATCCACACAAGCAT 59.493 43.478 0.00 0.00 0.00 3.79
17 18 2.884012 CCACAACTTATCCACACAAGCA 59.116 45.455 0.00 0.00 0.00 3.91
18 19 2.228822 CCCACAACTTATCCACACAAGC 59.771 50.000 0.00 0.00 0.00 4.01
19 20 3.486383 ACCCACAACTTATCCACACAAG 58.514 45.455 0.00 0.00 0.00 3.16
20 21 3.482436 GACCCACAACTTATCCACACAA 58.518 45.455 0.00 0.00 0.00 3.33
21 22 2.224670 GGACCCACAACTTATCCACACA 60.225 50.000 0.00 0.00 0.00 3.72
22 23 2.433436 GGACCCACAACTTATCCACAC 58.567 52.381 0.00 0.00 0.00 3.82
23 24 1.353022 GGGACCCACAACTTATCCACA 59.647 52.381 5.33 0.00 0.00 4.17
24 25 1.677820 CGGGACCCACAACTTATCCAC 60.678 57.143 12.15 0.00 0.00 4.02
25 26 0.616371 CGGGACCCACAACTTATCCA 59.384 55.000 12.15 0.00 0.00 3.41
26 27 0.746923 GCGGGACCCACAACTTATCC 60.747 60.000 12.15 0.00 0.00 2.59
27 28 0.746923 GGCGGGACCCACAACTTATC 60.747 60.000 12.15 0.00 0.00 1.75
28 29 1.301954 GGCGGGACCCACAACTTAT 59.698 57.895 12.15 0.00 0.00 1.73
29 30 2.751688 GGCGGGACCCACAACTTA 59.248 61.111 12.15 0.00 0.00 2.24
38 39 2.836360 TCTCATACGGGCGGGACC 60.836 66.667 0.00 0.00 37.93 4.46
39 40 0.820891 TACTCTCATACGGGCGGGAC 60.821 60.000 0.00 0.00 0.00 4.46
40 41 0.106569 TTACTCTCATACGGGCGGGA 60.107 55.000 0.00 0.00 0.00 5.14
41 42 0.031721 GTTACTCTCATACGGGCGGG 59.968 60.000 0.00 0.00 0.00 6.13
42 43 1.030457 AGTTACTCTCATACGGGCGG 58.970 55.000 0.00 0.00 0.00 6.13
43 44 1.269102 CCAGTTACTCTCATACGGGCG 60.269 57.143 0.00 0.00 0.00 6.13
44 45 1.755380 ACCAGTTACTCTCATACGGGC 59.245 52.381 0.00 0.00 31.40 6.13
45 46 2.100916 CCACCAGTTACTCTCATACGGG 59.899 54.545 0.00 0.00 33.98 5.28
46 47 2.100916 CCCACCAGTTACTCTCATACGG 59.899 54.545 0.00 0.00 0.00 4.02
47 48 2.758979 ACCCACCAGTTACTCTCATACG 59.241 50.000 0.00 0.00 0.00 3.06
48 49 3.132467 GGACCCACCAGTTACTCTCATAC 59.868 52.174 0.00 0.00 38.79 2.39
49 50 3.371965 GGACCCACCAGTTACTCTCATA 58.628 50.000 0.00 0.00 38.79 2.15
50 51 2.188817 GGACCCACCAGTTACTCTCAT 58.811 52.381 0.00 0.00 38.79 2.90
51 52 1.640917 GGACCCACCAGTTACTCTCA 58.359 55.000 0.00 0.00 38.79 3.27
52 53 0.903236 GGGACCCACCAGTTACTCTC 59.097 60.000 5.33 0.00 41.20 3.20
53 54 0.903454 CGGGACCCACCAGTTACTCT 60.903 60.000 12.15 0.00 41.20 3.24
54 55 1.595357 CGGGACCCACCAGTTACTC 59.405 63.158 12.15 0.00 41.20 2.59
55 56 2.590114 GCGGGACCCACCAGTTACT 61.590 63.158 12.15 0.00 41.20 2.24
56 57 2.046604 GCGGGACCCACCAGTTAC 60.047 66.667 12.15 0.00 41.20 2.50
57 58 3.697747 CGCGGGACCCACCAGTTA 61.698 66.667 12.15 0.00 41.20 2.24
63 64 2.510064 TTATGACACGCGGGACCCAC 62.510 60.000 19.19 0.00 0.00 4.61
64 65 2.284276 TTATGACACGCGGGACCCA 61.284 57.895 19.19 10.65 0.00 4.51
65 66 1.812507 GTTATGACACGCGGGACCC 60.813 63.158 19.19 0.00 0.00 4.46
66 67 0.804933 GAGTTATGACACGCGGGACC 60.805 60.000 19.19 7.02 0.00 4.46
67 68 0.108992 TGAGTTATGACACGCGGGAC 60.109 55.000 19.19 10.62 0.00 4.46
68 69 0.604073 TTGAGTTATGACACGCGGGA 59.396 50.000 19.19 0.00 0.00 5.14
69 70 1.434555 TTTGAGTTATGACACGCGGG 58.565 50.000 6.92 6.92 0.00 6.13
70 71 2.285026 CGATTTGAGTTATGACACGCGG 60.285 50.000 12.47 1.27 0.00 6.46
71 72 2.842069 GCGATTTGAGTTATGACACGCG 60.842 50.000 3.53 3.53 34.87 6.01
72 73 2.348666 AGCGATTTGAGTTATGACACGC 59.651 45.455 0.00 0.00 43.00 5.34
73 74 5.481472 GTTAGCGATTTGAGTTATGACACG 58.519 41.667 0.00 0.00 0.00 4.49
74 75 5.220605 GGGTTAGCGATTTGAGTTATGACAC 60.221 44.000 0.00 0.00 0.00 3.67
75 76 4.873827 GGGTTAGCGATTTGAGTTATGACA 59.126 41.667 0.00 0.00 0.00 3.58
76 77 4.272748 GGGGTTAGCGATTTGAGTTATGAC 59.727 45.833 0.00 0.00 0.00 3.06
77 78 4.163458 AGGGGTTAGCGATTTGAGTTATGA 59.837 41.667 0.00 0.00 0.00 2.15
78 79 4.451900 AGGGGTTAGCGATTTGAGTTATG 58.548 43.478 0.00 0.00 0.00 1.90
79 80 4.704965 GAGGGGTTAGCGATTTGAGTTAT 58.295 43.478 0.00 0.00 0.00 1.89
80 81 3.429822 CGAGGGGTTAGCGATTTGAGTTA 60.430 47.826 0.00 0.00 0.00 2.24
81 82 2.677037 CGAGGGGTTAGCGATTTGAGTT 60.677 50.000 0.00 0.00 0.00 3.01
82 83 1.134788 CGAGGGGTTAGCGATTTGAGT 60.135 52.381 0.00 0.00 0.00 3.41
83 84 1.134788 ACGAGGGGTTAGCGATTTGAG 60.135 52.381 0.00 0.00 0.00 3.02
84 85 0.899720 ACGAGGGGTTAGCGATTTGA 59.100 50.000 0.00 0.00 0.00 2.69
85 86 1.006832 CACGAGGGGTTAGCGATTTG 58.993 55.000 0.00 0.00 0.00 2.32
86 87 0.611714 ACACGAGGGGTTAGCGATTT 59.388 50.000 0.00 0.00 0.00 2.17
87 88 0.611714 AACACGAGGGGTTAGCGATT 59.388 50.000 0.00 0.00 0.00 3.34
88 89 0.611714 AAACACGAGGGGTTAGCGAT 59.388 50.000 0.00 0.00 0.00 4.58
89 90 0.393820 AAAACACGAGGGGTTAGCGA 59.606 50.000 0.00 0.00 0.00 4.93
90 91 0.515564 CAAAACACGAGGGGTTAGCG 59.484 55.000 0.00 0.00 0.00 4.26
91 92 0.240145 GCAAAACACGAGGGGTTAGC 59.760 55.000 0.00 0.00 0.00 3.09
92 93 1.600023 TGCAAAACACGAGGGGTTAG 58.400 50.000 0.00 0.00 0.00 2.34
93 94 2.279935 ATGCAAAACACGAGGGGTTA 57.720 45.000 0.00 0.00 0.00 2.85
94 95 1.408969 AATGCAAAACACGAGGGGTT 58.591 45.000 0.00 0.00 0.00 4.11
95 96 1.339929 GAAATGCAAAACACGAGGGGT 59.660 47.619 0.00 0.00 0.00 4.95
96 97 1.339610 TGAAATGCAAAACACGAGGGG 59.660 47.619 0.00 0.00 0.00 4.79
97 98 2.791383 TGAAATGCAAAACACGAGGG 57.209 45.000 0.00 0.00 0.00 4.30
98 99 2.988493 CCATGAAATGCAAAACACGAGG 59.012 45.455 0.00 0.00 44.97 4.63
99 100 3.641648 ACCATGAAATGCAAAACACGAG 58.358 40.909 0.00 0.00 44.97 4.18
100 101 3.724508 ACCATGAAATGCAAAACACGA 57.275 38.095 0.00 0.00 44.97 4.35
101 102 5.896922 TTAACCATGAAATGCAAAACACG 57.103 34.783 0.00 0.00 44.97 4.49
102 103 7.009568 TGTTTAACCATGAAATGCAAAACAC 57.990 32.000 0.00 0.00 44.97 3.32
103 104 7.044181 TCTGTTTAACCATGAAATGCAAAACA 58.956 30.769 0.00 0.00 44.97 2.83
104 105 7.475771 TCTGTTTAACCATGAAATGCAAAAC 57.524 32.000 0.00 0.00 44.97 2.43
105 106 6.202570 GCTCTGTTTAACCATGAAATGCAAAA 59.797 34.615 0.00 0.00 44.97 2.44
106 107 5.695816 GCTCTGTTTAACCATGAAATGCAAA 59.304 36.000 0.00 0.00 44.97 3.68
107 108 5.229423 GCTCTGTTTAACCATGAAATGCAA 58.771 37.500 0.00 0.00 44.97 4.08
108 109 4.321899 GGCTCTGTTTAACCATGAAATGCA 60.322 41.667 0.00 0.00 44.97 3.96
109 110 4.176271 GGCTCTGTTTAACCATGAAATGC 58.824 43.478 0.00 0.00 44.97 3.56
110 111 5.389859 TGGCTCTGTTTAACCATGAAATG 57.610 39.130 0.00 0.00 46.21 2.32
116 117 3.009723 CGACATGGCTCTGTTTAACCAT 58.990 45.455 0.00 0.00 43.70 3.55
117 118 2.422597 CGACATGGCTCTGTTTAACCA 58.577 47.619 0.00 0.00 36.43 3.67
118 119 1.130561 GCGACATGGCTCTGTTTAACC 59.869 52.381 0.00 0.00 0.00 2.85
119 120 1.804151 TGCGACATGGCTCTGTTTAAC 59.196 47.619 0.00 0.00 0.00 2.01
120 121 2.177394 TGCGACATGGCTCTGTTTAA 57.823 45.000 0.00 0.00 0.00 1.52
121 122 2.401583 ATGCGACATGGCTCTGTTTA 57.598 45.000 0.00 0.00 0.00 2.01
122 123 1.200716 CAATGCGACATGGCTCTGTTT 59.799 47.619 0.00 0.00 0.00 2.83
123 124 0.806868 CAATGCGACATGGCTCTGTT 59.193 50.000 0.00 0.00 0.00 3.16
124 125 1.028330 CCAATGCGACATGGCTCTGT 61.028 55.000 0.00 0.00 0.00 3.41
125 126 0.745486 TCCAATGCGACATGGCTCTG 60.745 55.000 0.00 0.00 36.62 3.35
126 127 0.463295 CTCCAATGCGACATGGCTCT 60.463 55.000 0.00 0.00 36.62 4.09
127 128 2.020131 CTCCAATGCGACATGGCTC 58.980 57.895 0.00 0.00 36.62 4.70
128 129 2.117156 GCTCCAATGCGACATGGCT 61.117 57.895 0.00 0.00 36.62 4.75
129 130 0.815213 TAGCTCCAATGCGACATGGC 60.815 55.000 0.00 0.00 36.62 4.40
130 131 1.888215 ATAGCTCCAATGCGACATGG 58.112 50.000 0.00 0.00 38.13 3.66
131 132 3.657634 ACTATAGCTCCAATGCGACATG 58.342 45.455 0.00 0.00 38.13 3.21
132 133 4.060900 CAACTATAGCTCCAATGCGACAT 58.939 43.478 0.00 0.00 38.13 3.06
133 134 3.457234 CAACTATAGCTCCAATGCGACA 58.543 45.455 0.00 0.00 38.13 4.35
134 135 2.802816 CCAACTATAGCTCCAATGCGAC 59.197 50.000 0.00 0.00 38.13 5.19
135 136 2.806745 GCCAACTATAGCTCCAATGCGA 60.807 50.000 0.00 0.00 38.13 5.10
136 137 1.532868 GCCAACTATAGCTCCAATGCG 59.467 52.381 0.00 0.00 38.13 4.73
137 138 2.856222 AGCCAACTATAGCTCCAATGC 58.144 47.619 0.00 0.00 32.71 3.56
138 139 4.454678 TCAAGCCAACTATAGCTCCAATG 58.545 43.478 0.00 0.00 38.74 2.82
139 140 4.778213 TCAAGCCAACTATAGCTCCAAT 57.222 40.909 0.00 0.00 38.74 3.16
140 141 4.568072 TTCAAGCCAACTATAGCTCCAA 57.432 40.909 0.00 0.00 38.74 3.53
141 142 4.225042 TCTTTCAAGCCAACTATAGCTCCA 59.775 41.667 0.00 0.00 38.74 3.86
142 143 4.572795 GTCTTTCAAGCCAACTATAGCTCC 59.427 45.833 0.00 0.00 38.74 4.70
143 144 4.268884 CGTCTTTCAAGCCAACTATAGCTC 59.731 45.833 0.00 0.00 38.74 4.09
144 145 4.184629 CGTCTTTCAAGCCAACTATAGCT 58.815 43.478 0.00 0.00 42.40 3.32
145 146 3.933332 ACGTCTTTCAAGCCAACTATAGC 59.067 43.478 0.00 0.00 0.00 2.97
146 147 4.265556 CGACGTCTTTCAAGCCAACTATAG 59.734 45.833 14.70 0.00 0.00 1.31
147 148 4.171005 CGACGTCTTTCAAGCCAACTATA 58.829 43.478 14.70 0.00 0.00 1.31
148 149 2.993899 CGACGTCTTTCAAGCCAACTAT 59.006 45.455 14.70 0.00 0.00 2.12
149 150 2.400399 CGACGTCTTTCAAGCCAACTA 58.600 47.619 14.70 0.00 0.00 2.24
150 151 1.217882 CGACGTCTTTCAAGCCAACT 58.782 50.000 14.70 0.00 0.00 3.16
151 152 0.384353 GCGACGTCTTTCAAGCCAAC 60.384 55.000 14.70 0.00 0.00 3.77
152 153 0.812014 TGCGACGTCTTTCAAGCCAA 60.812 50.000 14.70 0.00 0.00 4.52
153 154 1.221466 CTGCGACGTCTTTCAAGCCA 61.221 55.000 14.70 0.00 0.00 4.75
154 155 1.493311 CTGCGACGTCTTTCAAGCC 59.507 57.895 14.70 0.00 0.00 4.35
155 156 0.944311 TCCTGCGACGTCTTTCAAGC 60.944 55.000 14.70 8.92 0.00 4.01
156 157 1.497991 TTCCTGCGACGTCTTTCAAG 58.502 50.000 14.70 3.12 0.00 3.02
157 158 1.864711 CTTTCCTGCGACGTCTTTCAA 59.135 47.619 14.70 0.00 0.00 2.69
158 159 1.497991 CTTTCCTGCGACGTCTTTCA 58.502 50.000 14.70 7.82 0.00 2.69
159 160 0.164002 GCTTTCCTGCGACGTCTTTC 59.836 55.000 14.70 3.25 0.00 2.62
160 161 0.249911 AGCTTTCCTGCGACGTCTTT 60.250 50.000 14.70 0.00 38.13 2.52
161 162 0.601558 TAGCTTTCCTGCGACGTCTT 59.398 50.000 14.70 0.00 38.13 3.01
162 163 0.818296 ATAGCTTTCCTGCGACGTCT 59.182 50.000 14.70 0.00 38.13 4.18
163 164 1.641577 AATAGCTTTCCTGCGACGTC 58.358 50.000 5.18 5.18 38.13 4.34
164 165 2.094762 AAATAGCTTTCCTGCGACGT 57.905 45.000 0.00 0.00 38.13 4.34
165 166 3.163594 CAAAAATAGCTTTCCTGCGACG 58.836 45.455 0.00 0.00 38.13 5.12
166 167 4.160736 ACAAAAATAGCTTTCCTGCGAC 57.839 40.909 0.00 0.00 38.13 5.19
167 168 5.950758 TTACAAAAATAGCTTTCCTGCGA 57.049 34.783 0.00 0.00 38.13 5.10
168 169 6.149633 AGTTTACAAAAATAGCTTTCCTGCG 58.850 36.000 0.00 0.00 38.13 5.18
169 170 8.079809 TGTAGTTTACAAAAATAGCTTTCCTGC 58.920 33.333 0.00 0.00 35.38 4.85
172 173 9.274065 CGATGTAGTTTACAAAAATAGCTTTCC 57.726 33.333 0.00 0.00 42.76 3.13
173 174 8.786028 GCGATGTAGTTTACAAAAATAGCTTTC 58.214 33.333 0.00 0.00 42.76 2.62
174 175 8.293867 TGCGATGTAGTTTACAAAAATAGCTTT 58.706 29.630 0.00 0.00 42.76 3.51
175 176 7.749126 GTGCGATGTAGTTTACAAAAATAGCTT 59.251 33.333 0.00 0.00 42.76 3.74
176 177 7.119262 AGTGCGATGTAGTTTACAAAAATAGCT 59.881 33.333 0.00 0.00 42.76 3.32
177 178 7.241376 AGTGCGATGTAGTTTACAAAAATAGC 58.759 34.615 0.00 0.00 42.76 2.97
178 179 9.685005 GTAGTGCGATGTAGTTTACAAAAATAG 57.315 33.333 0.00 0.00 42.76 1.73
179 180 8.374728 CGTAGTGCGATGTAGTTTACAAAAATA 58.625 33.333 0.00 0.00 42.76 1.40
180 181 7.095523 ACGTAGTGCGATGTAGTTTACAAAAAT 60.096 33.333 7.88 0.00 42.51 1.82
181 182 6.200665 ACGTAGTGCGATGTAGTTTACAAAAA 59.799 34.615 7.88 0.00 42.51 1.94
182 183 5.691305 ACGTAGTGCGATGTAGTTTACAAAA 59.309 36.000 7.88 0.00 42.51 2.44
183 184 5.221880 ACGTAGTGCGATGTAGTTTACAAA 58.778 37.500 7.88 0.00 42.51 2.83
184 185 4.797471 ACGTAGTGCGATGTAGTTTACAA 58.203 39.130 7.88 0.00 42.51 2.41
185 186 4.424061 ACGTAGTGCGATGTAGTTTACA 57.576 40.909 7.88 0.00 42.51 2.41
186 187 5.839963 GTACGTAGTGCGATGTAGTTTAC 57.160 43.478 7.88 0.00 45.73 2.01
187 188 7.028962 AATTGTACGTAGTGCGATGTAGTTTA 58.971 34.615 7.88 0.00 46.42 2.01
188 189 5.865552 AATTGTACGTAGTGCGATGTAGTTT 59.134 36.000 7.88 0.00 46.42 2.66
189 190 5.404946 AATTGTACGTAGTGCGATGTAGTT 58.595 37.500 7.88 0.00 46.42 2.24
190 191 4.990257 AATTGTACGTAGTGCGATGTAGT 58.010 39.130 7.88 0.00 46.42 2.73
191 192 5.944049 AAATTGTACGTAGTGCGATGTAG 57.056 39.130 7.88 0.00 46.42 2.74
192 193 6.320944 TGTAAATTGTACGTAGTGCGATGTA 58.679 36.000 7.88 0.00 46.42 2.29
193 194 5.162794 TGTAAATTGTACGTAGTGCGATGT 58.837 37.500 7.88 0.00 46.42 3.06
194 195 5.689927 TGTAAATTGTACGTAGTGCGATG 57.310 39.130 7.88 0.00 46.42 3.84
198 199 8.624028 GTTTTTCATGTAAATTGTACGTAGTGC 58.376 33.333 0.00 0.00 45.73 4.40
199 200 8.823840 CGTTTTTCATGTAAATTGTACGTAGTG 58.176 33.333 0.00 0.00 45.73 2.74
201 202 8.922738 ACGTTTTTCATGTAAATTGTACGTAG 57.077 30.769 18.00 0.00 33.45 3.51
202 203 7.735156 CGACGTTTTTCATGTAAATTGTACGTA 59.265 33.333 18.91 0.00 34.40 3.57
203 204 6.570789 CGACGTTTTTCATGTAAATTGTACGT 59.429 34.615 18.94 18.94 35.66 3.57
204 205 6.448879 GCGACGTTTTTCATGTAAATTGTACG 60.449 38.462 14.37 14.37 0.00 3.67
205 206 6.357503 TGCGACGTTTTTCATGTAAATTGTAC 59.642 34.615 0.00 0.00 0.00 2.90
206 207 6.357503 GTGCGACGTTTTTCATGTAAATTGTA 59.642 34.615 0.00 0.00 0.00 2.41
207 208 5.172411 GTGCGACGTTTTTCATGTAAATTGT 59.828 36.000 0.00 0.99 0.00 2.71
208 209 5.172232 TGTGCGACGTTTTTCATGTAAATTG 59.828 36.000 0.00 0.00 0.00 2.32
209 210 5.274718 TGTGCGACGTTTTTCATGTAAATT 58.725 33.333 0.00 0.00 0.00 1.82
210 211 4.849883 TGTGCGACGTTTTTCATGTAAAT 58.150 34.783 0.00 0.00 0.00 1.40
211 212 4.274421 TGTGCGACGTTTTTCATGTAAA 57.726 36.364 0.00 0.00 0.00 2.01
212 213 3.303461 CCTGTGCGACGTTTTTCATGTAA 60.303 43.478 0.00 0.00 0.00 2.41
213 214 2.222213 CCTGTGCGACGTTTTTCATGTA 59.778 45.455 0.00 0.00 0.00 2.29
214 215 1.002900 CCTGTGCGACGTTTTTCATGT 60.003 47.619 0.00 0.00 0.00 3.21
215 216 1.262950 TCCTGTGCGACGTTTTTCATG 59.737 47.619 0.00 0.00 0.00 3.07
216 217 1.531149 CTCCTGTGCGACGTTTTTCAT 59.469 47.619 0.00 0.00 0.00 2.57
217 218 0.934496 CTCCTGTGCGACGTTTTTCA 59.066 50.000 0.00 0.00 0.00 2.69
218 219 0.384353 GCTCCTGTGCGACGTTTTTC 60.384 55.000 0.00 0.00 0.00 2.29
219 220 0.814010 AGCTCCTGTGCGACGTTTTT 60.814 50.000 0.00 0.00 38.13 1.94
220 221 0.032952 TAGCTCCTGTGCGACGTTTT 59.967 50.000 0.00 0.00 38.13 2.43
221 222 0.246635 ATAGCTCCTGTGCGACGTTT 59.753 50.000 0.00 0.00 38.13 3.60
222 223 0.246635 AATAGCTCCTGTGCGACGTT 59.753 50.000 0.00 0.00 38.13 3.99
223 224 0.458543 CAATAGCTCCTGTGCGACGT 60.459 55.000 0.00 0.00 38.13 4.34
224 225 1.148157 CCAATAGCTCCTGTGCGACG 61.148 60.000 0.00 0.00 38.13 5.12
225 226 1.432270 GCCAATAGCTCCTGTGCGAC 61.432 60.000 0.00 0.00 38.99 5.19
226 227 1.153369 GCCAATAGCTCCTGTGCGA 60.153 57.895 0.00 0.00 38.99 5.10
227 228 2.182842 GGCCAATAGCTCCTGTGCG 61.183 63.158 0.00 0.00 43.05 5.34
228 229 1.825622 GGGCCAATAGCTCCTGTGC 60.826 63.158 4.39 0.00 43.05 4.57
229 230 0.184451 ATGGGCCAATAGCTCCTGTG 59.816 55.000 11.89 0.00 43.71 3.66
230 231 1.819753 TATGGGCCAATAGCTCCTGT 58.180 50.000 11.89 0.00 43.71 4.00
231 232 2.957402 TTATGGGCCAATAGCTCCTG 57.043 50.000 11.89 0.00 43.71 3.86
232 233 4.475919 AATTTATGGGCCAATAGCTCCT 57.524 40.909 11.89 0.00 43.71 3.69
233 234 5.336770 GCTAAATTTATGGGCCAATAGCTCC 60.337 44.000 11.89 0.00 43.71 4.70
234 235 5.336770 GGCTAAATTTATGGGCCAATAGCTC 60.337 44.000 11.89 8.42 45.08 4.09
235 236 4.528206 GGCTAAATTTATGGGCCAATAGCT 59.472 41.667 11.89 0.00 43.05 3.32
236 237 4.528206 AGGCTAAATTTATGGGCCAATAGC 59.472 41.667 22.20 16.48 44.60 2.97
237 238 5.539955 ACAGGCTAAATTTATGGGCCAATAG 59.460 40.000 22.20 14.00 44.60 1.73
238 239 5.463154 ACAGGCTAAATTTATGGGCCAATA 58.537 37.500 22.20 0.00 44.60 1.90
239 240 4.297768 ACAGGCTAAATTTATGGGCCAAT 58.702 39.130 22.20 0.00 44.60 3.16
240 241 3.718723 ACAGGCTAAATTTATGGGCCAA 58.281 40.909 22.20 0.00 44.60 4.52
241 242 3.396685 ACAGGCTAAATTTATGGGCCA 57.603 42.857 22.20 9.61 44.60 5.36
242 243 4.442893 GGAAACAGGCTAAATTTATGGGCC 60.443 45.833 15.72 15.72 42.74 5.80
243 244 4.693283 GGAAACAGGCTAAATTTATGGGC 58.307 43.478 0.00 0.81 0.00 5.36
244 245 4.736464 GCGGAAACAGGCTAAATTTATGGG 60.736 45.833 0.00 0.00 0.00 4.00
245 246 4.142271 TGCGGAAACAGGCTAAATTTATGG 60.142 41.667 0.00 0.00 0.00 2.74
246 247 4.992688 TGCGGAAACAGGCTAAATTTATG 58.007 39.130 0.00 0.00 0.00 1.90
275 276 1.335506 CGGTTCAAACAAATCCACGGG 60.336 52.381 0.00 0.00 0.00 5.28
356 357 4.284485 CATCAATCACATGCATGTAACCG 58.716 43.478 30.92 18.90 39.39 4.44
357 358 4.046462 GCATCAATCACATGCATGTAACC 58.954 43.478 30.92 10.50 45.19 2.85
375 376 6.981762 TCTTTCTTTCTCTTCATCTGCATC 57.018 37.500 0.00 0.00 0.00 3.91
376 377 7.756395 TTTCTTTCTTTCTCTTCATCTGCAT 57.244 32.000 0.00 0.00 0.00 3.96
459 461 0.700564 AGAGGAAATGAGGGCTTGCA 59.299 50.000 0.00 0.00 0.00 4.08
462 464 7.072961 TCAAATATAGAGAGGAAATGAGGGCTT 59.927 37.037 0.00 0.00 0.00 4.35
513 515 7.667219 CCCTCTATTAGTCCTATACGTTTGGTA 59.333 40.741 0.00 0.00 35.11 3.25
514 516 6.492772 CCCTCTATTAGTCCTATACGTTTGGT 59.507 42.308 0.00 0.00 0.00 3.67
516 518 6.492772 ACCCCTCTATTAGTCCTATACGTTTG 59.507 42.308 0.00 0.00 0.00 2.93
558 561 1.205893 CCCGGACAAGAGAGAAGGAAG 59.794 57.143 0.73 0.00 0.00 3.46
586 589 0.409092 ATCCTCCACAAACATGCCCA 59.591 50.000 0.00 0.00 0.00 5.36
587 590 1.560505 AATCCTCCACAAACATGCCC 58.439 50.000 0.00 0.00 0.00 5.36
608 611 1.086565 TATCTATGGCCGGTCCCCTA 58.913 55.000 2.12 0.00 0.00 3.53
611 614 2.188817 AGATTATCTATGGCCGGTCCC 58.811 52.381 2.12 0.00 0.00 4.46
644 647 8.962679 AGTTATTATTAGATTCACCCGCAAAAA 58.037 29.630 0.00 0.00 0.00 1.94
645 648 8.514330 AGTTATTATTAGATTCACCCGCAAAA 57.486 30.769 0.00 0.00 0.00 2.44
646 649 8.402472 CAAGTTATTATTAGATTCACCCGCAAA 58.598 33.333 0.00 0.00 0.00 3.68
647 650 7.012894 CCAAGTTATTATTAGATTCACCCGCAA 59.987 37.037 0.00 0.00 0.00 4.85
648 651 6.485313 CCAAGTTATTATTAGATTCACCCGCA 59.515 38.462 0.00 0.00 0.00 5.69
649 652 6.485648 ACCAAGTTATTATTAGATTCACCCGC 59.514 38.462 0.00 0.00 0.00 6.13
650 653 7.713507 TCACCAAGTTATTATTAGATTCACCCG 59.286 37.037 0.00 0.00 0.00 5.28
651 654 8.974060 TCACCAAGTTATTATTAGATTCACCC 57.026 34.615 0.00 0.00 0.00 4.61
672 675 1.737793 GATCCGGTCATGTGTTTCACC 59.262 52.381 0.00 0.00 32.73 4.02
676 679 2.168521 AGATCGATCCGGTCATGTGTTT 59.831 45.455 21.66 0.00 39.71 2.83
720 729 6.120812 CGTAATCTTATGTGCTTTTAGCGAC 58.879 40.000 0.00 0.00 46.26 5.19
776 785 4.520492 AGGTGATCCACTGTGTGATTTTTC 59.480 41.667 7.08 0.14 35.23 2.29
777 786 4.473444 AGGTGATCCACTGTGTGATTTTT 58.527 39.130 7.08 0.00 35.23 1.94
816 826 1.634459 TCGAGTTGTCTAGGTCTCCCT 59.366 52.381 0.00 0.00 45.51 4.20
842 852 0.447801 GCGATTGAGCACGGATTGTT 59.552 50.000 0.00 0.00 37.05 2.83
860 870 0.232303 GTGCGCGGTATTATCACTGC 59.768 55.000 8.83 0.00 45.56 4.40
1024 1278 4.112341 GGCTAGTGCGTCGACGGT 62.112 66.667 36.13 7.09 40.82 4.83
1044 1298 1.725931 CGCACTTTGTTCTTGATCGCC 60.726 52.381 0.00 0.00 0.00 5.54
1057 1311 2.030562 CCACCTCCGACGCACTTT 59.969 61.111 0.00 0.00 0.00 2.66
1059 1313 1.466025 TTAACCACCTCCGACGCACT 61.466 55.000 0.00 0.00 0.00 4.40
1061 1315 1.005867 GTTAACCACCTCCGACGCA 60.006 57.895 0.00 0.00 0.00 5.24
1064 1318 1.012486 CGCAGTTAACCACCTCCGAC 61.012 60.000 0.88 0.00 0.00 4.79
1067 1321 2.038837 GGCGCAGTTAACCACCTCC 61.039 63.158 10.83 0.00 0.00 4.30
1230 1484 2.672996 TGCTTTGGCGAGGGAAGC 60.673 61.111 0.00 0.00 44.51 3.86
1293 1547 0.325860 AGGGACAATACAGGGCGGTA 60.326 55.000 0.00 0.00 0.00 4.02
1294 1548 1.615424 AGGGACAATACAGGGCGGT 60.615 57.895 0.00 0.00 0.00 5.68
1308 1562 2.112297 GTGGCGTTTGTGGAGGGA 59.888 61.111 0.00 0.00 0.00 4.20
1399 1653 2.758327 CCCGGACTCATCGGTGGA 60.758 66.667 0.73 0.00 45.51 4.02
1561 1817 1.669999 GAATGCCATGCCCAGGTGAC 61.670 60.000 0.00 0.00 0.00 3.67
1622 1878 1.086696 GATTACCACAGTGCATGCGT 58.913 50.000 14.09 6.04 0.00 5.24
1837 2102 2.347114 CCAGGATGACACGCCACA 59.653 61.111 0.00 0.00 39.69 4.17
1867 2132 1.688735 TGGGGAGAATGCGAGATACTG 59.311 52.381 0.00 0.00 0.00 2.74
2792 3150 1.658686 GGACTCTGTGGATCGCGAGT 61.659 60.000 16.66 3.64 39.27 4.18
2793 3151 1.064946 GGACTCTGTGGATCGCGAG 59.935 63.158 16.66 0.00 0.00 5.03
2794 3152 1.657751 CTGGACTCTGTGGATCGCGA 61.658 60.000 13.09 13.09 0.00 5.87
2795 3153 1.226802 CTGGACTCTGTGGATCGCG 60.227 63.158 0.00 0.00 0.00 5.87
2796 3154 1.520342 GCTGGACTCTGTGGATCGC 60.520 63.158 0.00 0.00 0.00 4.58
2797 3155 0.179116 CTGCTGGACTCTGTGGATCG 60.179 60.000 0.00 0.00 0.00 3.69
2798 3156 0.461693 GCTGCTGGACTCTGTGGATC 60.462 60.000 0.00 0.00 0.00 3.36
2799 3157 0.908656 AGCTGCTGGACTCTGTGGAT 60.909 55.000 0.00 0.00 0.00 3.41
2847 3205 2.067598 CGTGTGTCGTGTCGTCTCG 61.068 63.158 0.00 0.00 34.52 4.04
2848 3206 0.316442 TTCGTGTGTCGTGTCGTCTC 60.316 55.000 0.00 0.00 40.80 3.36
2849 3207 0.590732 GTTCGTGTGTCGTGTCGTCT 60.591 55.000 0.00 0.00 40.80 4.18
2850 3208 0.862701 TGTTCGTGTGTCGTGTCGTC 60.863 55.000 0.00 0.00 40.80 4.20
2851 3209 1.135699 GTGTTCGTGTGTCGTGTCGT 61.136 55.000 0.00 0.00 40.80 4.34
2855 3213 0.590481 TCTCGTGTTCGTGTGTCGTG 60.590 55.000 0.00 0.00 40.80 4.35
2926 3289 7.362802 AGTGGTAAAAGTTGTAGAAGTCTCT 57.637 36.000 0.00 0.00 35.52 3.10
2927 3290 8.358895 ACTAGTGGTAAAAGTTGTAGAAGTCTC 58.641 37.037 0.00 0.00 0.00 3.36
2928 3291 8.247666 ACTAGTGGTAAAAGTTGTAGAAGTCT 57.752 34.615 0.00 0.00 0.00 3.24
2929 3292 8.883954 AACTAGTGGTAAAAGTTGTAGAAGTC 57.116 34.615 0.00 0.00 32.38 3.01
2932 3295 9.630098 CGATAACTAGTGGTAAAAGTTGTAGAA 57.370 33.333 0.00 0.00 35.23 2.10
2933 3296 7.756722 GCGATAACTAGTGGTAAAAGTTGTAGA 59.243 37.037 0.00 0.00 35.23 2.59
2938 3313 5.803967 CGAGCGATAACTAGTGGTAAAAGTT 59.196 40.000 0.00 0.00 37.27 2.66
2986 3387 2.891391 CGTCTGTGTCGTCAACATTTG 58.109 47.619 0.00 0.00 40.80 2.32
2988 3389 0.859232 GCGTCTGTGTCGTCAACATT 59.141 50.000 0.00 0.00 40.80 2.71
2993 3394 3.986006 GGGGCGTCTGTGTCGTCA 61.986 66.667 0.00 0.00 34.45 4.35
3029 3431 4.755507 GAGGAGGTCGTCGGGGGT 62.756 72.222 0.00 0.00 0.00 4.95
3222 3703 2.551270 GTGCGAGCCAACGAACAG 59.449 61.111 0.00 0.00 41.00 3.16
3248 3729 3.462169 TCGAAGGCGAAGACCCAA 58.538 55.556 0.00 0.00 44.78 4.12
3291 3772 1.112315 ATCTCGGCGCTGGAGAAGAT 61.112 55.000 26.96 19.80 43.26 2.40
3326 3807 2.267961 CTTAGACGGCCCGGCTTT 59.732 61.111 21.02 0.00 46.07 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.