Multiple sequence alignment - TraesCS5B01G360400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G360400 chr5B 100.000 3871 0 0 1 3871 539938767 539934897 0.000000e+00 7149.0
1 TraesCS5B01G360400 chr5D 90.427 2528 127 43 594 3050 443506849 443504366 0.000000e+00 3221.0
2 TraesCS5B01G360400 chr5D 90.056 714 41 13 3174 3871 443504155 443503456 0.000000e+00 898.0
3 TraesCS5B01G360400 chr5A 89.659 2524 141 58 594 3042 559749049 559746571 0.000000e+00 3105.0
4 TraesCS5B01G360400 chr5A 81.818 495 65 18 3388 3871 559746440 559745960 3.630000e-105 392.0
5 TraesCS5B01G360400 chr5A 100.000 44 0 0 1 44 53120525 53120482 8.910000e-12 82.4
6 TraesCS5B01G360400 chr5A 97.436 39 1 0 3131 3169 469056983 469056945 2.500000e-07 67.6
7 TraesCS5B01G360400 chr5A 94.872 39 2 0 3131 3169 600428258 600428296 1.160000e-05 62.1
8 TraesCS5B01G360400 chr5A 92.683 41 3 0 3129 3169 32667813 32667773 4.180000e-05 60.2
9 TraesCS5B01G360400 chr7B 100.000 43 0 0 1 43 385867495 385867453 3.210000e-11 80.5
10 TraesCS5B01G360400 chr7B 87.302 63 3 5 1 63 385183068 385183011 2.500000e-07 67.6
11 TraesCS5B01G360400 chr2D 94.118 51 3 0 1 51 433465956 433466006 1.150000e-10 78.7
12 TraesCS5B01G360400 chr1B 97.826 46 0 1 1 46 115020229 115020185 1.150000e-10 78.7
13 TraesCS5B01G360400 chr1B 94.231 52 1 2 1 50 283687652 283687703 1.150000e-10 78.7
14 TraesCS5B01G360400 chr1B 95.122 41 2 0 3129 3169 664075105 664075145 8.980000e-07 65.8
15 TraesCS5B01G360400 chr1B 92.683 41 3 0 3129 3169 616616824 616616784 4.180000e-05 60.2
16 TraesCS5B01G360400 chr7A 97.727 44 1 0 1 44 223352740 223352783 4.150000e-10 76.8
17 TraesCS5B01G360400 chr7A 97.143 35 1 0 3130 3164 700690086 700690052 4.180000e-05 60.2
18 TraesCS5B01G360400 chr1D 100.000 40 0 0 1 40 404885186 404885225 1.490000e-09 75.0
19 TraesCS5B01G360400 chr4D 88.333 60 4 3 1 58 198296177 198296235 6.940000e-08 69.4
20 TraesCS5B01G360400 chr4D 94.872 39 2 0 3131 3169 471964200 471964238 1.160000e-05 62.1
21 TraesCS5B01G360400 chr2A 92.683 41 3 0 3129 3169 683725712 683725672 4.180000e-05 60.2
22 TraesCS5B01G360400 chrUn 87.500 48 2 1 3130 3177 50621276 50621233 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G360400 chr5B 539934897 539938767 3870 True 7149.0 7149 100.0000 1 3871 1 chr5B.!!$R1 3870
1 TraesCS5B01G360400 chr5D 443503456 443506849 3393 True 2059.5 3221 90.2415 594 3871 2 chr5D.!!$R1 3277
2 TraesCS5B01G360400 chr5A 559745960 559749049 3089 True 1748.5 3105 85.7385 594 3871 2 chr5A.!!$R4 3277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.030908 GCCTCCTACTCGTGAATCGG 59.969 60.0 0.00 0.00 40.32 4.18 F
509 510 0.037232 GGTGTCGGAGGAAGTTGGAG 60.037 60.0 0.00 0.00 0.00 3.86 F
546 547 0.179004 TCGGGCAAACATGAAGGTGT 60.179 50.0 0.00 0.00 0.00 4.16 F
587 588 0.318955 GACGAGTTTTTCCGGACGGA 60.319 55.0 1.83 9.76 43.52 4.69 F
588 589 0.319297 ACGAGTTTTTCCGGACGGAG 60.319 55.0 13.64 3.15 46.06 4.63 F
912 935 0.547075 CTCCACCTCCGACCTCTCTA 59.453 60.0 0.00 0.00 0.00 2.43 F
2121 2163 0.590230 CGACGTCTCTGCTTCCGATC 60.590 60.0 14.70 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2147 0.248825 CCAGATCGGAAGCAGAGACG 60.249 60.000 0.00 0.00 36.56 4.18 R
2410 2473 0.604578 GCTGATCCCTGCAAAAGCAA 59.395 50.000 0.00 0.00 37.23 3.91 R
2434 2503 1.353694 AGCTTTGTTGAGATGGCCTCT 59.646 47.619 3.32 4.09 42.44 3.69 R
2572 2661 1.679153 CCCTGCAAAAACCAGTAACGT 59.321 47.619 0.00 0.00 0.00 3.99 R
2609 2698 2.682136 TCGATCACGCCTTCCCCA 60.682 61.111 0.00 0.00 39.58 4.96 R
2772 2861 0.258774 AGGCTCTCCTGGACTCTCTC 59.741 60.000 0.00 0.00 42.34 3.20 R
3157 3259 1.062428 TGGTAATCCCTCCATCCGTCT 60.062 52.381 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.537192 ACAATCAAAAATTATAGATACGTCGGA 57.463 29.630 0.00 0.00 0.00 4.55
32 33 9.976511 AATCAAAAATTATAGATACGTCGGAGA 57.023 29.630 0.00 0.00 0.00 3.71
45 46 4.396854 GGAGACGTATCACACCGC 57.603 61.111 12.92 0.00 0.00 5.68
46 47 1.585521 GGAGACGTATCACACCGCG 60.586 63.158 12.92 0.00 0.00 6.46
47 48 2.202570 AGACGTATCACACCGCGC 60.203 61.111 0.00 0.00 0.00 6.86
48 49 3.252484 GACGTATCACACCGCGCC 61.252 66.667 0.00 0.00 0.00 6.53
49 50 3.975083 GACGTATCACACCGCGCCA 62.975 63.158 0.00 0.00 0.00 5.69
50 51 2.584970 CGTATCACACCGCGCCAT 60.585 61.111 0.00 0.00 0.00 4.40
51 52 2.585869 CGTATCACACCGCGCCATC 61.586 63.158 0.00 0.00 0.00 3.51
52 53 2.108157 TATCACACCGCGCCATCC 59.892 61.111 0.00 0.00 0.00 3.51
53 54 2.431454 TATCACACCGCGCCATCCT 61.431 57.895 0.00 0.00 0.00 3.24
54 55 2.363711 TATCACACCGCGCCATCCTC 62.364 60.000 0.00 0.00 0.00 3.71
57 58 4.552365 CACCGCGCCATCCTCCAT 62.552 66.667 0.00 0.00 0.00 3.41
58 59 4.552365 ACCGCGCCATCCTCCATG 62.552 66.667 0.00 0.00 0.00 3.66
63 64 4.881440 GCCATCCTCCATGCGCCA 62.881 66.667 4.18 0.00 0.00 5.69
64 65 2.593725 CCATCCTCCATGCGCCAG 60.594 66.667 4.18 0.00 0.00 4.85
65 66 3.285215 CATCCTCCATGCGCCAGC 61.285 66.667 4.18 0.00 45.41 4.85
86 87 2.715624 GCCGCTGCCTTAATTCGG 59.284 61.111 0.00 0.00 42.68 4.30
118 119 2.436646 CCCAGAACGCCGCAGAAT 60.437 61.111 0.00 0.00 0.00 2.40
119 120 2.464459 CCCAGAACGCCGCAGAATC 61.464 63.158 0.00 0.00 0.00 2.52
120 121 2.464459 CCAGAACGCCGCAGAATCC 61.464 63.158 0.00 0.00 0.00 3.01
121 122 1.741401 CAGAACGCCGCAGAATCCA 60.741 57.895 0.00 0.00 0.00 3.41
122 123 1.091771 CAGAACGCCGCAGAATCCAT 61.092 55.000 0.00 0.00 0.00 3.41
123 124 0.811616 AGAACGCCGCAGAATCCATC 60.812 55.000 0.00 0.00 0.00 3.51
124 125 0.811616 GAACGCCGCAGAATCCATCT 60.812 55.000 0.00 0.00 39.68 2.90
125 126 0.392998 AACGCCGCAGAATCCATCTT 60.393 50.000 0.00 0.00 35.73 2.40
126 127 1.091771 ACGCCGCAGAATCCATCTTG 61.092 55.000 0.00 0.00 35.73 3.02
127 128 1.358046 GCCGCAGAATCCATCTTGC 59.642 57.895 0.00 0.00 35.73 4.01
128 129 2.028130 CCGCAGAATCCATCTTGCC 58.972 57.895 0.00 0.00 35.73 4.52
129 130 0.465097 CCGCAGAATCCATCTTGCCT 60.465 55.000 0.00 0.00 35.73 4.75
130 131 0.942962 CGCAGAATCCATCTTGCCTC 59.057 55.000 0.00 0.00 35.73 4.70
131 132 1.316651 GCAGAATCCATCTTGCCTCC 58.683 55.000 0.00 0.00 35.73 4.30
132 133 1.133853 GCAGAATCCATCTTGCCTCCT 60.134 52.381 0.00 0.00 35.73 3.69
133 134 2.105477 GCAGAATCCATCTTGCCTCCTA 59.895 50.000 0.00 0.00 35.73 2.94
134 135 3.737850 CAGAATCCATCTTGCCTCCTAC 58.262 50.000 0.00 0.00 35.73 3.18
135 136 3.390639 CAGAATCCATCTTGCCTCCTACT 59.609 47.826 0.00 0.00 35.73 2.57
136 137 3.645687 AGAATCCATCTTGCCTCCTACTC 59.354 47.826 0.00 0.00 33.39 2.59
137 138 1.403814 TCCATCTTGCCTCCTACTCG 58.596 55.000 0.00 0.00 0.00 4.18
138 139 1.115467 CCATCTTGCCTCCTACTCGT 58.885 55.000 0.00 0.00 0.00 4.18
139 140 1.202463 CCATCTTGCCTCCTACTCGTG 60.202 57.143 0.00 0.00 0.00 4.35
140 141 1.751351 CATCTTGCCTCCTACTCGTGA 59.249 52.381 0.00 0.00 0.00 4.35
141 142 1.919240 TCTTGCCTCCTACTCGTGAA 58.081 50.000 0.00 0.00 0.00 3.18
142 143 2.457598 TCTTGCCTCCTACTCGTGAAT 58.542 47.619 0.00 0.00 0.00 2.57
143 144 2.427453 TCTTGCCTCCTACTCGTGAATC 59.573 50.000 0.00 0.00 0.00 2.52
144 145 0.738975 TGCCTCCTACTCGTGAATCG 59.261 55.000 0.00 0.00 41.41 3.34
145 146 0.030908 GCCTCCTACTCGTGAATCGG 59.969 60.000 0.00 0.00 40.32 4.18
146 147 1.390565 CCTCCTACTCGTGAATCGGT 58.609 55.000 0.00 0.00 40.32 4.69
147 148 1.065701 CCTCCTACTCGTGAATCGGTG 59.934 57.143 0.00 0.00 40.32 4.94
148 149 2.014857 CTCCTACTCGTGAATCGGTGA 58.985 52.381 0.00 0.00 40.32 4.02
149 150 2.619177 CTCCTACTCGTGAATCGGTGAT 59.381 50.000 0.00 0.00 40.32 3.06
150 151 2.357952 TCCTACTCGTGAATCGGTGATG 59.642 50.000 0.00 0.00 40.32 3.07
151 152 2.543861 CCTACTCGTGAATCGGTGATGG 60.544 54.545 0.00 0.00 40.32 3.51
152 153 0.895530 ACTCGTGAATCGGTGATGGT 59.104 50.000 0.00 0.00 40.32 3.55
153 154 1.135083 ACTCGTGAATCGGTGATGGTC 60.135 52.381 0.00 0.00 40.32 4.02
154 155 0.179148 TCGTGAATCGGTGATGGTCG 60.179 55.000 0.00 0.00 40.32 4.79
155 156 1.752501 CGTGAATCGGTGATGGTCGC 61.753 60.000 0.00 0.00 35.71 5.19
156 157 1.153449 TGAATCGGTGATGGTCGCC 60.153 57.895 0.00 0.00 43.41 5.54
161 162 4.077184 GGTGATGGTCGCCGTGGA 62.077 66.667 0.00 0.00 37.29 4.02
162 163 2.047655 GTGATGGTCGCCGTGGAA 60.048 61.111 0.00 0.00 0.00 3.53
163 164 1.449601 GTGATGGTCGCCGTGGAAT 60.450 57.895 0.00 0.00 0.00 3.01
164 165 1.153449 TGATGGTCGCCGTGGAATC 60.153 57.895 0.00 0.00 0.00 2.52
165 166 2.202878 ATGGTCGCCGTGGAATCG 60.203 61.111 0.00 0.00 0.00 3.34
166 167 2.622903 GATGGTCGCCGTGGAATCGA 62.623 60.000 0.00 0.00 0.00 3.59
167 168 2.582498 GGTCGCCGTGGAATCGAG 60.582 66.667 0.00 0.00 32.54 4.04
168 169 3.255379 GTCGCCGTGGAATCGAGC 61.255 66.667 0.00 0.00 32.54 5.03
169 170 4.508128 TCGCCGTGGAATCGAGCC 62.508 66.667 0.00 0.00 0.00 4.70
170 171 4.514577 CGCCGTGGAATCGAGCCT 62.515 66.667 8.39 0.00 0.00 4.58
171 172 2.125106 GCCGTGGAATCGAGCCTT 60.125 61.111 8.39 0.00 0.00 4.35
172 173 2.174319 GCCGTGGAATCGAGCCTTC 61.174 63.158 8.39 0.00 0.00 3.46
173 174 1.517832 CCGTGGAATCGAGCCTTCT 59.482 57.895 8.39 0.00 0.00 2.85
174 175 0.528684 CCGTGGAATCGAGCCTTCTC 60.529 60.000 8.39 0.00 35.99 2.87
175 176 0.528684 CGTGGAATCGAGCCTTCTCC 60.529 60.000 8.39 0.29 35.94 3.71
176 177 0.827368 GTGGAATCGAGCCTTCTCCT 59.173 55.000 8.39 0.00 35.94 3.69
177 178 1.115467 TGGAATCGAGCCTTCTCCTC 58.885 55.000 8.39 0.00 35.94 3.71
181 182 4.560856 CGAGCCTTCTCCTCGCCG 62.561 72.222 0.00 0.00 44.53 6.46
182 183 3.453679 GAGCCTTCTCCTCGCCGT 61.454 66.667 0.00 0.00 33.19 5.68
183 184 3.708220 GAGCCTTCTCCTCGCCGTG 62.708 68.421 0.00 0.00 33.19 4.94
184 185 4.821589 GCCTTCTCCTCGCCGTGG 62.822 72.222 0.00 0.00 0.00 4.94
185 186 3.382832 CCTTCTCCTCGCCGTGGT 61.383 66.667 4.98 0.00 0.00 4.16
186 187 2.657237 CTTCTCCTCGCCGTGGTT 59.343 61.111 4.98 0.00 0.00 3.67
187 188 1.446272 CTTCTCCTCGCCGTGGTTC 60.446 63.158 4.98 0.00 0.00 3.62
188 189 2.154798 CTTCTCCTCGCCGTGGTTCA 62.155 60.000 4.98 0.00 0.00 3.18
189 190 2.430382 TTCTCCTCGCCGTGGTTCAC 62.430 60.000 4.98 0.00 0.00 3.18
190 191 3.934391 CTCCTCGCCGTGGTTCACC 62.934 68.421 4.98 0.00 0.00 4.02
191 192 4.308458 CCTCGCCGTGGTTCACCA 62.308 66.667 0.00 0.00 45.30 4.17
200 201 2.245484 TGGTTCACCATGGGGAACA 58.755 52.632 44.90 32.94 43.96 3.18
201 202 0.558220 TGGTTCACCATGGGGAACAA 59.442 50.000 44.90 38.38 43.96 2.83
202 203 1.256812 GGTTCACCATGGGGAACAAG 58.743 55.000 44.90 16.55 43.96 3.16
203 204 1.256812 GTTCACCATGGGGAACAAGG 58.743 55.000 42.20 12.44 43.54 3.61
204 205 1.153539 TTCACCATGGGGAACAAGGA 58.846 50.000 25.99 1.86 40.39 3.36
205 206 0.698238 TCACCATGGGGAACAAGGAG 59.302 55.000 16.35 0.00 40.39 3.69
206 207 0.698238 CACCATGGGGAACAAGGAGA 59.302 55.000 18.09 0.00 40.39 3.71
207 208 1.075374 CACCATGGGGAACAAGGAGAA 59.925 52.381 18.09 0.00 40.39 2.87
208 209 1.355720 ACCATGGGGAACAAGGAGAAG 59.644 52.381 18.09 0.00 40.39 2.85
209 210 1.341383 CCATGGGGAACAAGGAGAAGG 60.341 57.143 2.85 0.00 40.39 3.46
210 211 1.635487 CATGGGGAACAAGGAGAAGGA 59.365 52.381 0.00 0.00 0.00 3.36
211 212 1.827792 TGGGGAACAAGGAGAAGGAA 58.172 50.000 0.00 0.00 0.00 3.36
212 213 1.705186 TGGGGAACAAGGAGAAGGAAG 59.295 52.381 0.00 0.00 0.00 3.46
213 214 1.614583 GGGGAACAAGGAGAAGGAAGC 60.615 57.143 0.00 0.00 0.00 3.86
214 215 1.073923 GGGAACAAGGAGAAGGAAGCA 59.926 52.381 0.00 0.00 0.00 3.91
215 216 2.489073 GGGAACAAGGAGAAGGAAGCAA 60.489 50.000 0.00 0.00 0.00 3.91
216 217 2.554462 GGAACAAGGAGAAGGAAGCAAC 59.446 50.000 0.00 0.00 0.00 4.17
217 218 3.214328 GAACAAGGAGAAGGAAGCAACA 58.786 45.455 0.00 0.00 0.00 3.33
218 219 3.515602 ACAAGGAGAAGGAAGCAACAT 57.484 42.857 0.00 0.00 0.00 2.71
219 220 3.152341 ACAAGGAGAAGGAAGCAACATG 58.848 45.455 0.00 0.00 0.00 3.21
220 221 2.490903 CAAGGAGAAGGAAGCAACATGG 59.509 50.000 0.00 0.00 0.00 3.66
221 222 0.813821 GGAGAAGGAAGCAACATGGC 59.186 55.000 0.00 0.00 0.00 4.40
222 223 0.449388 GAGAAGGAAGCAACATGGCG 59.551 55.000 0.00 0.00 39.27 5.69
223 224 0.962356 AGAAGGAAGCAACATGGCGG 60.962 55.000 0.00 0.00 39.27 6.13
224 225 0.960364 GAAGGAAGCAACATGGCGGA 60.960 55.000 0.00 0.00 39.27 5.54
225 226 0.962356 AAGGAAGCAACATGGCGGAG 60.962 55.000 0.00 0.00 39.27 4.63
226 227 2.409870 GGAAGCAACATGGCGGAGG 61.410 63.158 0.00 0.00 39.27 4.30
244 245 3.631046 CATAGGGCGGGGGAGCTC 61.631 72.222 4.71 4.71 38.04 4.09
245 246 4.964241 ATAGGGCGGGGGAGCTCC 62.964 72.222 25.59 25.59 38.69 4.70
284 285 3.744719 TCCGGCGTGGAAGAGTCG 61.745 66.667 6.01 0.00 46.38 4.18
285 286 3.744719 CCGGCGTGGAAGAGTCGA 61.745 66.667 6.01 0.00 42.00 4.20
286 287 2.202492 CGGCGTGGAAGAGTCGAG 60.202 66.667 0.00 0.00 0.00 4.04
287 288 2.507324 GGCGTGGAAGAGTCGAGC 60.507 66.667 0.00 0.00 0.00 5.03
288 289 2.569134 GCGTGGAAGAGTCGAGCT 59.431 61.111 0.00 0.00 0.00 4.09
289 290 1.515304 GCGTGGAAGAGTCGAGCTC 60.515 63.158 2.73 2.73 44.45 4.09
300 301 2.099143 TCGAGCTCGAGCAACTAGG 58.901 57.895 36.87 18.97 44.22 3.02
301 302 1.064946 CGAGCTCGAGCAACTAGGG 59.935 63.158 36.87 14.67 45.16 3.53
302 303 1.377366 CGAGCTCGAGCAACTAGGGA 61.377 60.000 36.87 0.00 45.16 4.20
303 304 0.818296 GAGCTCGAGCAACTAGGGAA 59.182 55.000 36.87 0.00 45.16 3.97
304 305 1.204941 GAGCTCGAGCAACTAGGGAAA 59.795 52.381 36.87 0.00 45.16 3.13
305 306 1.205893 AGCTCGAGCAACTAGGGAAAG 59.794 52.381 36.87 0.00 45.16 2.62
306 307 1.740718 GCTCGAGCAACTAGGGAAAGG 60.741 57.143 31.91 0.00 41.59 3.11
307 308 0.902531 TCGAGCAACTAGGGAAAGGG 59.097 55.000 0.00 0.00 0.00 3.95
308 309 0.107654 CGAGCAACTAGGGAAAGGGG 60.108 60.000 0.00 0.00 0.00 4.79
309 310 0.256177 GAGCAACTAGGGAAAGGGGG 59.744 60.000 0.00 0.00 0.00 5.40
310 311 0.178843 AGCAACTAGGGAAAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
311 312 0.927029 GCAACTAGGGAAAGGGGGAT 59.073 55.000 0.00 0.00 0.00 3.85
312 313 1.288037 GCAACTAGGGAAAGGGGGATT 59.712 52.381 0.00 0.00 0.00 3.01
313 314 2.292257 GCAACTAGGGAAAGGGGGATTT 60.292 50.000 0.00 0.00 0.00 2.17
314 315 3.821587 GCAACTAGGGAAAGGGGGATTTT 60.822 47.826 0.00 0.00 0.00 1.82
315 316 4.425772 CAACTAGGGAAAGGGGGATTTTT 58.574 43.478 0.00 0.00 0.00 1.94
316 317 5.585894 CAACTAGGGAAAGGGGGATTTTTA 58.414 41.667 0.00 0.00 0.00 1.52
317 318 5.467668 ACTAGGGAAAGGGGGATTTTTAG 57.532 43.478 0.00 0.00 0.00 1.85
318 319 3.776731 AGGGAAAGGGGGATTTTTAGG 57.223 47.619 0.00 0.00 0.00 2.69
319 320 2.317900 AGGGAAAGGGGGATTTTTAGGG 59.682 50.000 0.00 0.00 0.00 3.53
320 321 2.628559 GGGAAAGGGGGATTTTTAGGGG 60.629 54.545 0.00 0.00 0.00 4.79
321 322 2.628559 GGAAAGGGGGATTTTTAGGGGG 60.629 54.545 0.00 0.00 0.00 5.40
322 323 0.341961 AAGGGGGATTTTTAGGGGGC 59.658 55.000 0.00 0.00 0.00 5.80
323 324 0.557652 AGGGGGATTTTTAGGGGGCT 60.558 55.000 0.00 0.00 0.00 5.19
324 325 0.398522 GGGGGATTTTTAGGGGGCTG 60.399 60.000 0.00 0.00 0.00 4.85
325 326 0.338467 GGGGATTTTTAGGGGGCTGT 59.662 55.000 0.00 0.00 0.00 4.40
326 327 1.485124 GGGATTTTTAGGGGGCTGTG 58.515 55.000 0.00 0.00 0.00 3.66
327 328 0.824109 GGATTTTTAGGGGGCTGTGC 59.176 55.000 0.00 0.00 0.00 4.57
328 329 0.455815 GATTTTTAGGGGGCTGTGCG 59.544 55.000 0.00 0.00 0.00 5.34
329 330 0.039035 ATTTTTAGGGGGCTGTGCGA 59.961 50.000 0.00 0.00 0.00 5.10
330 331 0.891904 TTTTTAGGGGGCTGTGCGAC 60.892 55.000 0.00 0.00 0.00 5.19
331 332 2.058125 TTTTAGGGGGCTGTGCGACA 62.058 55.000 0.00 0.00 0.00 4.35
332 333 2.741486 TTTAGGGGGCTGTGCGACAC 62.741 60.000 3.44 3.44 34.56 3.67
339 340 4.742201 CTGTGCGACACGGGGGAG 62.742 72.222 9.98 0.00 37.12 4.30
377 378 4.468689 GTGGTGCGGGGGAGCTAC 62.469 72.222 0.00 0.00 38.13 3.58
415 416 4.463879 CAGAGGGGAGCTGCGTGG 62.464 72.222 0.00 0.00 0.00 4.94
456 457 3.807538 GAGCTGTGCCGCATGGTG 61.808 66.667 0.00 0.00 37.67 4.17
459 460 3.740397 CTGTGCCGCATGGTGGTG 61.740 66.667 0.00 0.00 37.67 4.17
466 467 4.408821 GCATGGTGGTGCGGAGGA 62.409 66.667 0.00 0.00 35.10 3.71
467 468 2.124983 CATGGTGGTGCGGAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
485 486 3.793144 CTGCGCGGCTTTGGAGTC 61.793 66.667 8.83 0.00 0.00 3.36
492 493 4.699522 GCTTTGGAGTCGGCCGGT 62.700 66.667 27.83 13.74 0.00 5.28
493 494 2.742372 CTTTGGAGTCGGCCGGTG 60.742 66.667 27.83 0.00 0.00 4.94
494 495 3.530910 CTTTGGAGTCGGCCGGTGT 62.531 63.158 27.83 10.27 0.00 4.16
495 496 3.524648 TTTGGAGTCGGCCGGTGTC 62.525 63.158 27.83 18.71 0.00 3.67
506 507 4.261888 CGGTGTCGGAGGAAGTTG 57.738 61.111 0.00 0.00 0.00 3.16
507 508 1.374252 CGGTGTCGGAGGAAGTTGG 60.374 63.158 0.00 0.00 0.00 3.77
508 509 1.812686 CGGTGTCGGAGGAAGTTGGA 61.813 60.000 0.00 0.00 0.00 3.53
509 510 0.037232 GGTGTCGGAGGAAGTTGGAG 60.037 60.000 0.00 0.00 0.00 3.86
510 511 0.037232 GTGTCGGAGGAAGTTGGAGG 60.037 60.000 0.00 0.00 0.00 4.30
511 512 1.192146 TGTCGGAGGAAGTTGGAGGG 61.192 60.000 0.00 0.00 0.00 4.30
512 513 1.612442 TCGGAGGAAGTTGGAGGGG 60.612 63.158 0.00 0.00 0.00 4.79
513 514 2.670148 CGGAGGAAGTTGGAGGGGG 61.670 68.421 0.00 0.00 0.00 5.40
514 515 1.229853 GGAGGAAGTTGGAGGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
515 516 1.275421 GGAGGAAGTTGGAGGGGGAG 61.275 65.000 0.00 0.00 0.00 4.30
516 517 0.547954 GAGGAAGTTGGAGGGGGAGT 60.548 60.000 0.00 0.00 0.00 3.85
517 518 0.842467 AGGAAGTTGGAGGGGGAGTG 60.842 60.000 0.00 0.00 0.00 3.51
518 519 1.002011 GAAGTTGGAGGGGGAGTGC 60.002 63.158 0.00 0.00 0.00 4.40
519 520 2.804828 GAAGTTGGAGGGGGAGTGCG 62.805 65.000 0.00 0.00 0.00 5.34
520 521 4.410400 GTTGGAGGGGGAGTGCGG 62.410 72.222 0.00 0.00 0.00 5.69
524 525 4.097361 GAGGGGGAGTGCGGGTTC 62.097 72.222 0.00 0.00 0.00 3.62
528 529 4.754667 GGGAGTGCGGGTTCGGTC 62.755 72.222 0.00 0.00 36.79 4.79
535 536 4.992511 CGGGTTCGGTCGGGCAAA 62.993 66.667 0.00 0.00 0.00 3.68
536 537 3.359523 GGGTTCGGTCGGGCAAAC 61.360 66.667 0.00 0.00 0.00 2.93
537 538 2.592287 GGTTCGGTCGGGCAAACA 60.592 61.111 0.00 0.00 0.00 2.83
538 539 1.969589 GGTTCGGTCGGGCAAACAT 60.970 57.895 0.00 0.00 0.00 2.71
539 540 1.209127 GTTCGGTCGGGCAAACATG 59.791 57.895 0.00 0.00 0.00 3.21
540 541 1.071642 TTCGGTCGGGCAAACATGA 59.928 52.632 0.00 0.00 0.00 3.07
541 542 0.535328 TTCGGTCGGGCAAACATGAA 60.535 50.000 0.00 0.00 0.00 2.57
542 543 0.953471 TCGGTCGGGCAAACATGAAG 60.953 55.000 0.00 0.00 0.00 3.02
543 544 1.883021 GGTCGGGCAAACATGAAGG 59.117 57.895 0.00 0.00 0.00 3.46
544 545 0.893727 GGTCGGGCAAACATGAAGGT 60.894 55.000 0.00 0.00 0.00 3.50
545 546 0.240945 GTCGGGCAAACATGAAGGTG 59.759 55.000 0.00 0.00 0.00 4.00
546 547 0.179004 TCGGGCAAACATGAAGGTGT 60.179 50.000 0.00 0.00 0.00 4.16
547 548 0.673437 CGGGCAAACATGAAGGTGTT 59.327 50.000 0.00 0.00 43.78 3.32
549 550 2.482839 CGGGCAAACATGAAGGTGTTTT 60.483 45.455 0.00 0.00 46.96 2.43
550 551 3.540617 GGGCAAACATGAAGGTGTTTTT 58.459 40.909 0.00 0.00 46.96 1.94
583 584 3.900446 GGAGACGAGTTTTTCCGGA 57.100 52.632 0.00 0.00 0.00 5.14
584 585 1.426423 GGAGACGAGTTTTTCCGGAC 58.574 55.000 1.83 0.00 0.00 4.79
585 586 1.058404 GAGACGAGTTTTTCCGGACG 58.942 55.000 1.83 5.89 0.00 4.79
586 587 0.319297 AGACGAGTTTTTCCGGACGG 60.319 55.000 1.83 3.96 0.00 4.79
587 588 0.318955 GACGAGTTTTTCCGGACGGA 60.319 55.000 1.83 9.76 43.52 4.69
588 589 0.319297 ACGAGTTTTTCCGGACGGAG 60.319 55.000 13.64 3.15 46.06 4.63
589 590 1.012486 CGAGTTTTTCCGGACGGAGG 61.012 60.000 13.64 0.00 46.06 4.30
590 591 0.672711 GAGTTTTTCCGGACGGAGGG 60.673 60.000 13.64 0.00 46.06 4.30
591 592 1.123246 AGTTTTTCCGGACGGAGGGA 61.123 55.000 13.64 1.83 46.06 4.20
592 593 0.672711 GTTTTTCCGGACGGAGGGAG 60.673 60.000 13.64 0.00 46.06 4.30
609 610 3.054655 AGGGAGTAGCAAATCCGCTTTTA 60.055 43.478 0.00 0.00 43.56 1.52
610 611 3.064958 GGGAGTAGCAAATCCGCTTTTAC 59.935 47.826 0.00 0.00 43.56 2.01
611 612 3.242316 GGAGTAGCAAATCCGCTTTTACG 60.242 47.826 0.00 0.00 43.56 3.18
630 632 9.236691 CTTTTACGTACACAAAACTAGTAGTGA 57.763 33.333 22.38 9.21 35.97 3.41
717 720 2.879002 AGAGTATGGCATCAGTGTCG 57.121 50.000 1.65 0.00 30.74 4.35
876 895 1.333636 ATCCTCCCTGCTTCTCACCG 61.334 60.000 0.00 0.00 0.00 4.94
885 904 1.900351 CTTCTCACCGCATCCTCCA 59.100 57.895 0.00 0.00 0.00 3.86
895 914 1.406860 GCATCCTCCACCTCCCTCTC 61.407 65.000 0.00 0.00 0.00 3.20
905 924 1.755008 CTCCCTCTCCACCTCCGAC 60.755 68.421 0.00 0.00 0.00 4.79
912 935 0.547075 CTCCACCTCCGACCTCTCTA 59.453 60.000 0.00 0.00 0.00 2.43
978 1006 3.101428 CGGCAAGCAAGCAAAGCG 61.101 61.111 2.78 0.00 37.01 4.68
979 1007 2.336088 GGCAAGCAAGCAAAGCGA 59.664 55.556 2.78 0.00 37.01 4.93
980 1008 1.731969 GGCAAGCAAGCAAAGCGAG 60.732 57.895 2.78 0.00 37.01 5.03
981 1009 2.370393 GCAAGCAAGCAAAGCGAGC 61.370 57.895 0.00 0.00 37.01 5.03
982 1010 2.078914 CAAGCAAGCAAAGCGAGCG 61.079 57.895 0.00 0.00 38.00 5.03
983 1011 2.253758 AAGCAAGCAAAGCGAGCGA 61.254 52.632 0.00 0.00 38.00 4.93
1053 1088 2.202987 CTGCAGGAGACCATCGCC 60.203 66.667 5.57 0.00 36.52 5.54
1402 1438 4.795278 GCGATTCTTGGCTAGAAATTTGTG 59.205 41.667 15.03 3.86 45.62 3.33
1405 1441 6.183360 CGATTCTTGGCTAGAAATTTGTGCTA 60.183 38.462 15.03 0.00 45.62 3.49
1413 1449 6.753744 GGCTAGAAATTTGTGCTAATCTTTGG 59.246 38.462 0.00 0.00 0.00 3.28
1478 1514 3.454573 TCGCCGGCCGAGTACAAT 61.455 61.111 30.73 0.00 41.89 2.71
1656 1692 1.165907 CGACAAGCCCAAGCACAAGA 61.166 55.000 0.00 0.00 43.56 3.02
1748 1784 2.604174 GGACCAGAACAACCACGCG 61.604 63.158 3.53 3.53 0.00 6.01
1751 1787 2.544359 CAGAACAACCACGCGTCG 59.456 61.111 9.86 5.15 0.00 5.12
1762 1798 4.129737 CGCGTCGGTCCTCATGGT 62.130 66.667 0.00 0.00 34.23 3.55
1907 1943 2.573609 AATCCGCCGACGAGAAAGGG 62.574 60.000 0.00 0.00 43.93 3.95
2086 2122 2.165998 GGCCAAGAAGAAGCTTCATGT 58.834 47.619 27.57 12.50 0.00 3.21
2093 2129 0.886563 AGAAGCTTCATGTTGCTGCC 59.113 50.000 27.57 10.04 39.71 4.85
2121 2163 0.590230 CGACGTCTCTGCTTCCGATC 60.590 60.000 14.70 0.00 0.00 3.69
2154 2196 6.889177 TGATAAGGTACTGAAAATCATTGGCA 59.111 34.615 0.00 0.00 40.86 4.92
2175 2217 6.830324 TGGCAATTCTGAATTTATGTCTAGCT 59.170 34.615 12.74 0.00 0.00 3.32
2177 2219 8.502387 GGCAATTCTGAATTTATGTCTAGCTAG 58.498 37.037 15.01 15.01 0.00 3.42
2193 2235 1.932511 GCTAGATGCAGAGAACAGCAC 59.067 52.381 0.00 0.00 40.99 4.40
2220 2276 2.426522 TGAGCAAATCAGCACAGTACC 58.573 47.619 0.00 0.00 36.85 3.34
2231 2292 5.771469 TCAGCACAGTACCAAATTGAATTG 58.229 37.500 0.00 0.00 0.00 2.32
2232 2293 5.534278 TCAGCACAGTACCAAATTGAATTGA 59.466 36.000 0.00 0.00 31.84 2.57
2233 2294 5.630680 CAGCACAGTACCAAATTGAATTGAC 59.369 40.000 0.00 0.00 31.84 3.18
2234 2295 5.536161 AGCACAGTACCAAATTGAATTGACT 59.464 36.000 0.00 0.00 31.84 3.41
2236 2297 6.735694 GCACAGTACCAAATTGAATTGACTGT 60.736 38.462 16.10 16.10 43.48 3.55
2237 2298 7.202526 CACAGTACCAAATTGAATTGACTGTT 58.797 34.615 17.89 7.77 41.65 3.16
2241 2304 6.907206 ACCAAATTGAATTGACTGTTTGTG 57.093 33.333 0.00 0.00 31.84 3.33
2251 2314 7.328249 TGAATTGACTGTTTGTGTTTGAACTTC 59.672 33.333 0.00 0.00 0.00 3.01
2335 2398 1.922570 CGACGAATCGGAACCTCAAT 58.077 50.000 7.80 0.00 44.99 2.57
2347 2410 6.632909 TCGGAACCTCAATTTCTCGTAAATA 58.367 36.000 0.15 0.00 0.00 1.40
2348 2411 6.532657 TCGGAACCTCAATTTCTCGTAAATAC 59.467 38.462 0.15 0.00 0.00 1.89
2349 2412 6.311935 CGGAACCTCAATTTCTCGTAAATACA 59.688 38.462 0.15 0.00 0.00 2.29
2396 2459 7.817418 AGGTAATTGTAGCTCTTGTTTGAAA 57.183 32.000 0.00 0.00 32.47 2.69
2398 2461 8.860088 AGGTAATTGTAGCTCTTGTTTGAAATT 58.140 29.630 0.00 0.00 32.47 1.82
2401 2464 8.807667 AATTGTAGCTCTTGTTTGAAATTCTG 57.192 30.769 0.00 0.00 0.00 3.02
2404 2467 6.767902 TGTAGCTCTTGTTTGAAATTCTGAGT 59.232 34.615 0.00 0.00 0.00 3.41
2407 2470 8.401490 AGCTCTTGTTTGAAATTCTGAGTATT 57.599 30.769 0.00 0.00 0.00 1.89
2408 2471 9.507329 AGCTCTTGTTTGAAATTCTGAGTATTA 57.493 29.630 0.00 0.00 0.00 0.98
2531 2613 6.572898 GCATTCCTCATTCCTCAACAATCAAA 60.573 38.462 0.00 0.00 0.00 2.69
2537 2619 5.598005 TCATTCCTCAACAATCAAACAACCT 59.402 36.000 0.00 0.00 0.00 3.50
2541 2623 5.656416 TCCTCAACAATCAAACAACCTTTCT 59.344 36.000 0.00 0.00 0.00 2.52
2542 2624 5.750067 CCTCAACAATCAAACAACCTTTCTG 59.250 40.000 0.00 0.00 0.00 3.02
2543 2625 6.405731 CCTCAACAATCAAACAACCTTTCTGA 60.406 38.462 0.00 0.00 0.00 3.27
2546 2635 7.492020 TCAACAATCAAACAACCTTTCTGAATG 59.508 33.333 0.00 0.00 0.00 2.67
2549 2638 7.492344 ACAATCAAACAACCTTTCTGAATGAAC 59.508 33.333 4.98 0.00 33.88 3.18
2550 2639 6.522625 TCAAACAACCTTTCTGAATGAACA 57.477 33.333 4.98 0.00 33.88 3.18
2551 2640 7.111247 TCAAACAACCTTTCTGAATGAACAT 57.889 32.000 4.98 0.00 33.88 2.71
2772 2861 0.106819 CTTCTCAGATGCCAAGGGGG 60.107 60.000 0.00 0.00 40.85 5.40
2776 2865 0.984961 TCAGATGCCAAGGGGGAGAG 60.985 60.000 0.00 0.00 38.23 3.20
2836 2925 6.883744 ACCCTTTCTATGATGAGAAGAAGAC 58.116 40.000 0.00 0.00 36.80 3.01
2893 2982 1.414181 CAGAGTGTATGTAGCTGGGGG 59.586 57.143 0.00 0.00 0.00 5.40
2894 2983 1.008449 AGAGTGTATGTAGCTGGGGGT 59.992 52.381 0.00 0.00 0.00 4.95
2897 2986 1.557832 GTGTATGTAGCTGGGGGTTCA 59.442 52.381 0.00 0.00 0.00 3.18
2898 2987 1.557832 TGTATGTAGCTGGGGGTTCAC 59.442 52.381 0.00 0.00 0.00 3.18
2935 3026 5.290643 GCACTGTCTTGTATCTTCTTGCTAG 59.709 44.000 0.00 0.00 0.00 3.42
2937 3028 6.870965 CACTGTCTTGTATCTTCTTGCTAGTT 59.129 38.462 0.00 0.00 0.00 2.24
2938 3029 6.870965 ACTGTCTTGTATCTTCTTGCTAGTTG 59.129 38.462 0.00 0.00 0.00 3.16
2939 3030 6.759272 TGTCTTGTATCTTCTTGCTAGTTGT 58.241 36.000 0.00 0.00 0.00 3.32
2940 3031 6.646653 TGTCTTGTATCTTCTTGCTAGTTGTG 59.353 38.462 0.00 0.00 0.00 3.33
2941 3032 6.868864 GTCTTGTATCTTCTTGCTAGTTGTGA 59.131 38.462 0.00 0.00 0.00 3.58
3006 3101 8.270080 TGTTCTGTGTTGTGTTTTAAGATGTA 57.730 30.769 0.00 0.00 0.00 2.29
3050 3145 6.845908 AGATTATATTGATGAGCACCTTGGT 58.154 36.000 0.00 0.00 0.00 3.67
3052 3147 8.439971 AGATTATATTGATGAGCACCTTGGTTA 58.560 33.333 0.00 0.00 0.00 2.85
3053 3148 8.995027 ATTATATTGATGAGCACCTTGGTTAA 57.005 30.769 0.00 0.00 0.00 2.01
3054 3149 8.995027 TTATATTGATGAGCACCTTGGTTAAT 57.005 30.769 0.00 0.00 0.00 1.40
3057 3152 5.435686 TGATGAGCACCTTGGTTAATAGT 57.564 39.130 0.00 0.00 0.00 2.12
3058 3153 6.553953 TGATGAGCACCTTGGTTAATAGTA 57.446 37.500 0.00 0.00 0.00 1.82
3059 3154 7.136822 TGATGAGCACCTTGGTTAATAGTAT 57.863 36.000 0.00 0.00 0.00 2.12
3060 3155 7.217200 TGATGAGCACCTTGGTTAATAGTATC 58.783 38.462 0.00 0.00 0.00 2.24
3061 3156 6.553953 TGAGCACCTTGGTTAATAGTATCA 57.446 37.500 0.00 0.00 0.00 2.15
3062 3157 7.136822 TGAGCACCTTGGTTAATAGTATCAT 57.863 36.000 0.00 0.00 0.00 2.45
3063 3158 7.217200 TGAGCACCTTGGTTAATAGTATCATC 58.783 38.462 0.00 0.00 0.00 2.92
3064 3159 6.534634 AGCACCTTGGTTAATAGTATCATCC 58.465 40.000 0.00 0.00 0.00 3.51
3065 3160 6.101150 AGCACCTTGGTTAATAGTATCATCCA 59.899 38.462 0.00 0.00 0.00 3.41
3066 3161 6.428159 GCACCTTGGTTAATAGTATCATCCAG 59.572 42.308 0.00 0.00 0.00 3.86
3067 3162 6.936900 CACCTTGGTTAATAGTATCATCCAGG 59.063 42.308 0.00 0.00 0.00 4.45
3068 3163 6.044404 ACCTTGGTTAATAGTATCATCCAGGG 59.956 42.308 18.31 18.31 43.31 4.45
3069 3164 6.044404 CCTTGGTTAATAGTATCATCCAGGGT 59.956 42.308 14.68 0.00 36.45 4.34
3070 3165 7.421382 CCTTGGTTAATAGTATCATCCAGGGTT 60.421 40.741 14.68 0.00 36.45 4.11
3071 3166 6.837312 TGGTTAATAGTATCATCCAGGGTTG 58.163 40.000 0.00 0.00 0.00 3.77
3072 3167 6.617784 TGGTTAATAGTATCATCCAGGGTTGA 59.382 38.462 1.79 1.79 0.00 3.18
3073 3168 7.294720 TGGTTAATAGTATCATCCAGGGTTGAT 59.705 37.037 14.48 14.48 37.96 2.57
3074 3169 8.822805 GGTTAATAGTATCATCCAGGGTTGATA 58.177 37.037 12.82 12.82 36.38 2.15
3077 3172 7.872061 ATAGTATCATCCAGGGTTGATAACA 57.128 36.000 16.74 10.32 38.06 2.41
3078 3173 6.179906 AGTATCATCCAGGGTTGATAACAG 57.820 41.667 16.74 0.00 38.06 3.16
3079 3174 3.281727 TCATCCAGGGTTGATAACAGC 57.718 47.619 0.00 0.00 0.00 4.40
3080 3175 2.846206 TCATCCAGGGTTGATAACAGCT 59.154 45.455 0.00 0.00 0.00 4.24
3081 3176 3.118261 TCATCCAGGGTTGATAACAGCTC 60.118 47.826 0.00 0.00 0.00 4.09
3082 3177 1.559682 TCCAGGGTTGATAACAGCTCC 59.440 52.381 0.00 0.00 0.00 4.70
3083 3178 1.281867 CCAGGGTTGATAACAGCTCCA 59.718 52.381 0.00 0.00 0.00 3.86
3084 3179 2.290896 CCAGGGTTGATAACAGCTCCAA 60.291 50.000 0.00 0.00 0.00 3.53
3085 3180 3.012518 CAGGGTTGATAACAGCTCCAAG 58.987 50.000 0.00 0.00 0.00 3.61
3086 3181 2.912956 AGGGTTGATAACAGCTCCAAGA 59.087 45.455 0.00 0.00 0.00 3.02
3087 3182 3.525199 AGGGTTGATAACAGCTCCAAGAT 59.475 43.478 0.00 0.00 0.00 2.40
3088 3183 3.879892 GGGTTGATAACAGCTCCAAGATC 59.120 47.826 0.00 0.00 0.00 2.75
3089 3184 4.384647 GGGTTGATAACAGCTCCAAGATCT 60.385 45.833 0.00 0.00 0.00 2.75
3090 3185 5.189180 GGTTGATAACAGCTCCAAGATCTT 58.811 41.667 0.88 0.88 0.00 2.40
3091 3186 5.649831 GGTTGATAACAGCTCCAAGATCTTT 59.350 40.000 4.86 0.00 0.00 2.52
3092 3187 6.151817 GGTTGATAACAGCTCCAAGATCTTTT 59.848 38.462 4.86 0.00 0.00 2.27
3093 3188 7.336931 GGTTGATAACAGCTCCAAGATCTTTTA 59.663 37.037 4.86 0.61 0.00 1.52
3094 3189 8.394121 GTTGATAACAGCTCCAAGATCTTTTAG 58.606 37.037 4.86 7.31 0.00 1.85
3095 3190 7.851228 TGATAACAGCTCCAAGATCTTTTAGA 58.149 34.615 4.86 2.44 0.00 2.10
3096 3191 7.766278 TGATAACAGCTCCAAGATCTTTTAGAC 59.234 37.037 4.86 3.32 0.00 2.59
3097 3192 5.753721 ACAGCTCCAAGATCTTTTAGACT 57.246 39.130 4.86 5.35 0.00 3.24
3098 3193 5.486526 ACAGCTCCAAGATCTTTTAGACTG 58.513 41.667 21.38 21.38 0.00 3.51
3099 3194 4.332268 CAGCTCCAAGATCTTTTAGACTGC 59.668 45.833 4.86 4.48 0.00 4.40
3100 3195 4.019860 AGCTCCAAGATCTTTTAGACTGCA 60.020 41.667 4.86 0.00 0.00 4.41
3101 3196 4.880696 GCTCCAAGATCTTTTAGACTGCAT 59.119 41.667 4.86 0.00 0.00 3.96
3102 3197 5.220815 GCTCCAAGATCTTTTAGACTGCATG 60.221 44.000 4.86 0.00 0.00 4.06
3103 3198 6.053632 TCCAAGATCTTTTAGACTGCATGA 57.946 37.500 4.86 0.00 0.00 3.07
3132 3234 3.069289 TGCAGTGTTGAGCATGAACTAG 58.931 45.455 0.00 0.00 31.74 2.57
3134 3236 3.120408 GCAGTGTTGAGCATGAACTAGTG 60.120 47.826 0.00 0.00 31.74 2.74
3135 3237 4.060900 CAGTGTTGAGCATGAACTAGTGT 58.939 43.478 0.00 0.00 31.74 3.55
3137 3239 3.433615 GTGTTGAGCATGAACTAGTGTCC 59.566 47.826 0.00 0.00 31.74 4.02
3138 3240 3.070878 TGTTGAGCATGAACTAGTGTCCA 59.929 43.478 0.00 0.00 31.74 4.02
3139 3241 4.065088 GTTGAGCATGAACTAGTGTCCAA 58.935 43.478 0.00 0.00 0.00 3.53
3143 3245 3.498397 AGCATGAACTAGTGTCCAAAACG 59.502 43.478 0.00 0.00 0.00 3.60
3146 3248 3.128349 TGAACTAGTGTCCAAAACGCTC 58.872 45.455 0.00 0.00 45.69 5.03
3147 3249 3.181469 TGAACTAGTGTCCAAAACGCTCT 60.181 43.478 0.00 0.00 45.69 4.09
3150 3252 5.148651 ACTAGTGTCCAAAACGCTCTTAT 57.851 39.130 0.00 0.00 45.69 1.73
3154 3256 8.472413 ACTAGTGTCCAAAACGCTCTTATATTA 58.528 33.333 0.00 0.00 45.69 0.98
3155 3257 9.477484 CTAGTGTCCAAAACGCTCTTATATTAT 57.523 33.333 0.00 0.00 45.69 1.28
3156 3258 8.142994 AGTGTCCAAAACGCTCTTATATTATG 57.857 34.615 0.00 0.00 45.69 1.90
3157 3259 7.985184 AGTGTCCAAAACGCTCTTATATTATGA 59.015 33.333 0.00 0.00 45.69 2.15
3158 3260 8.276325 GTGTCCAAAACGCTCTTATATTATGAG 58.724 37.037 0.00 0.00 35.42 2.90
3161 3263 7.381408 TCCAAAACGCTCTTATATTATGAGACG 59.619 37.037 13.57 13.57 36.53 4.18
3162 3264 7.359264 CCAAAACGCTCTTATATTATGAGACGG 60.359 40.741 16.71 7.11 35.72 4.79
3163 3265 6.570672 AACGCTCTTATATTATGAGACGGA 57.429 37.500 16.71 0.00 35.72 4.69
3165 3267 6.556212 ACGCTCTTATATTATGAGACGGATG 58.444 40.000 16.71 3.20 35.72 3.51
3166 3268 5.974158 CGCTCTTATATTATGAGACGGATGG 59.026 44.000 0.00 0.00 33.20 3.51
3170 3272 6.607600 TCTTATATTATGAGACGGATGGAGGG 59.392 42.308 0.00 0.00 0.00 4.30
3171 3273 2.767644 TTATGAGACGGATGGAGGGA 57.232 50.000 0.00 0.00 0.00 4.20
3172 3274 3.260269 TTATGAGACGGATGGAGGGAT 57.740 47.619 0.00 0.00 0.00 3.85
3230 3463 4.925061 CAAGCTCTTCTAACTTGCAGAG 57.075 45.455 0.00 0.00 34.90 3.35
3232 3465 4.881019 AGCTCTTCTAACTTGCAGAGAA 57.119 40.909 0.00 1.89 35.70 2.87
3279 3520 1.677576 TCAGCAAGCTTTGTGAACTGG 59.322 47.619 0.00 0.00 0.00 4.00
3280 3521 0.386838 AGCAAGCTTTGTGAACTGGC 59.613 50.000 0.00 0.00 0.00 4.85
3319 3563 7.285172 TGAATTGAATTCAACAAGTCTTCCTCA 59.715 33.333 22.71 5.14 45.57 3.86
3323 3567 4.753516 TTCAACAAGTCTTCCTCACTCA 57.246 40.909 0.00 0.00 0.00 3.41
3372 3616 2.005451 CTATGACACTTGAGCACCTGC 58.995 52.381 0.00 0.00 42.49 4.85
3408 3652 3.386078 TGATCCTGATACTCCAGTCAAGC 59.614 47.826 0.00 0.00 32.43 4.01
3429 3673 7.171508 TCAAGCTATGTAATCAATCAATCCGTC 59.828 37.037 0.00 0.00 0.00 4.79
3439 3683 6.327279 TCAATCAATCCGTCTCGTACATAT 57.673 37.500 0.00 0.00 0.00 1.78
3444 3688 5.119743 TCAATCCGTCTCGTACATATACTCG 59.880 44.000 0.00 0.00 0.00 4.18
3446 3690 3.983988 TCCGTCTCGTACATATACTCGTC 59.016 47.826 0.00 0.00 0.00 4.20
3448 3692 5.048713 TCCGTCTCGTACATATACTCGTCTA 60.049 44.000 0.00 0.00 0.00 2.59
3449 3693 5.631096 CCGTCTCGTACATATACTCGTCTAA 59.369 44.000 0.00 0.00 0.00 2.10
3450 3694 6.183359 CCGTCTCGTACATATACTCGTCTAAG 60.183 46.154 0.00 0.00 0.00 2.18
3464 3708 7.373778 ACTCGTCTAAGTCAAAAACAAAAGT 57.626 32.000 0.00 0.00 0.00 2.66
3479 3725 3.247648 ACAAAAGTAAGTAGTGCAGTGCG 59.752 43.478 11.20 0.00 0.00 5.34
3557 3803 7.116805 GTCTGACATCCAAAATTGATTCAAACC 59.883 37.037 2.68 0.00 0.00 3.27
3559 3805 6.930164 TGACATCCAAAATTGATTCAAACCTG 59.070 34.615 2.68 1.28 0.00 4.00
3747 3997 1.986210 GGCCTGCCCTTCTGCAATT 60.986 57.895 0.00 0.00 41.51 2.32
3764 4014 3.766151 CAATTGAGCCACAAGTAGCATG 58.234 45.455 0.00 0.00 42.02 4.06
3767 4017 1.901833 TGAGCCACAAGTAGCATGAGA 59.098 47.619 0.00 0.00 0.00 3.27
3771 4021 3.503748 AGCCACAAGTAGCATGAGAAAAC 59.496 43.478 0.00 0.00 0.00 2.43
3773 4023 4.614535 GCCACAAGTAGCATGAGAAAACAG 60.615 45.833 0.00 0.00 0.00 3.16
3786 4038 4.289410 TGAGAAAACAGGAGAATGGATGGA 59.711 41.667 0.00 0.00 0.00 3.41
3795 4047 5.415077 CAGGAGAATGGATGGATTAATGCTC 59.585 44.000 8.53 3.67 0.00 4.26
3796 4048 4.704057 GGAGAATGGATGGATTAATGCTCC 59.296 45.833 8.53 12.08 0.00 4.70
3797 4049 5.319453 GAGAATGGATGGATTAATGCTCCA 58.681 41.667 21.46 21.46 46.45 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.537192 TCCGACGTATCTATAATTTTTGATTGT 57.463 29.630 0.00 0.00 0.00 2.71
6 7 9.976511 TCTCCGACGTATCTATAATTTTTGATT 57.023 29.630 0.00 0.00 0.00 2.57
7 8 9.408069 GTCTCCGACGTATCTATAATTTTTGAT 57.592 33.333 0.00 0.00 0.00 2.57
8 9 8.792831 GTCTCCGACGTATCTATAATTTTTGA 57.207 34.615 0.00 0.00 0.00 2.69
25 26 0.247974 CGGTGTGATACGTCTCCGAC 60.248 60.000 9.17 1.32 36.61 4.79
26 27 1.985447 GCGGTGTGATACGTCTCCGA 61.985 60.000 16.66 0.00 36.61 4.55
27 28 1.585521 GCGGTGTGATACGTCTCCG 60.586 63.158 10.17 10.17 37.11 4.63
28 29 1.585521 CGCGGTGTGATACGTCTCC 60.586 63.158 0.00 0.00 0.00 3.71
29 30 2.222217 GCGCGGTGTGATACGTCTC 61.222 63.158 8.83 0.00 0.00 3.36
30 31 2.202570 GCGCGGTGTGATACGTCT 60.203 61.111 8.83 0.00 0.00 4.18
31 32 3.252484 GGCGCGGTGTGATACGTC 61.252 66.667 8.83 0.00 0.00 4.34
32 33 3.365291 ATGGCGCGGTGTGATACGT 62.365 57.895 8.83 0.00 0.00 3.57
33 34 2.584970 ATGGCGCGGTGTGATACG 60.585 61.111 8.83 0.00 0.00 3.06
34 35 2.244651 GGATGGCGCGGTGTGATAC 61.245 63.158 8.83 0.00 0.00 2.24
35 36 2.108157 GGATGGCGCGGTGTGATA 59.892 61.111 8.83 0.00 0.00 2.15
36 37 3.740128 GAGGATGGCGCGGTGTGAT 62.740 63.158 8.83 0.00 0.00 3.06
37 38 4.451150 GAGGATGGCGCGGTGTGA 62.451 66.667 8.83 0.00 0.00 3.58
40 41 4.552365 ATGGAGGATGGCGCGGTG 62.552 66.667 8.83 0.00 0.00 4.94
41 42 4.552365 CATGGAGGATGGCGCGGT 62.552 66.667 8.83 0.00 0.00 5.68
46 47 4.881440 TGGCGCATGGAGGATGGC 62.881 66.667 10.83 0.00 31.99 4.40
47 48 2.593725 CTGGCGCATGGAGGATGG 60.594 66.667 10.83 0.00 31.99 3.51
48 49 3.285215 GCTGGCGCATGGAGGATG 61.285 66.667 10.83 0.00 35.78 3.51
49 50 4.923942 CGCTGGCGCATGGAGGAT 62.924 66.667 10.83 0.00 35.30 3.24
69 70 2.715624 CCGAATTAAGGCAGCGGC 59.284 61.111 0.00 0.00 35.17 6.53
101 102 2.436646 ATTCTGCGGCGTTCTGGG 60.437 61.111 9.37 0.00 0.00 4.45
102 103 2.464459 GGATTCTGCGGCGTTCTGG 61.464 63.158 9.37 0.00 0.00 3.86
103 104 1.091771 ATGGATTCTGCGGCGTTCTG 61.092 55.000 9.37 0.00 0.00 3.02
104 105 0.811616 GATGGATTCTGCGGCGTTCT 60.812 55.000 9.37 0.00 0.00 3.01
105 106 0.811616 AGATGGATTCTGCGGCGTTC 60.812 55.000 9.37 0.00 31.79 3.95
106 107 0.392998 AAGATGGATTCTGCGGCGTT 60.393 50.000 9.37 0.00 33.93 4.84
107 108 1.091771 CAAGATGGATTCTGCGGCGT 61.092 55.000 9.37 0.00 33.93 5.68
108 109 1.645455 CAAGATGGATTCTGCGGCG 59.355 57.895 0.51 0.51 33.93 6.46
109 110 1.358046 GCAAGATGGATTCTGCGGC 59.642 57.895 0.00 0.00 33.93 6.53
110 111 0.465097 AGGCAAGATGGATTCTGCGG 60.465 55.000 0.00 0.00 33.93 5.69
111 112 0.942962 GAGGCAAGATGGATTCTGCG 59.057 55.000 0.00 0.00 33.93 5.18
112 113 1.133853 AGGAGGCAAGATGGATTCTGC 60.134 52.381 0.00 0.00 33.93 4.26
113 114 3.390639 AGTAGGAGGCAAGATGGATTCTG 59.609 47.826 0.00 0.00 33.93 3.02
114 115 3.645687 GAGTAGGAGGCAAGATGGATTCT 59.354 47.826 0.00 0.00 35.70 2.40
115 116 3.553922 CGAGTAGGAGGCAAGATGGATTC 60.554 52.174 0.00 0.00 0.00 2.52
116 117 2.366916 CGAGTAGGAGGCAAGATGGATT 59.633 50.000 0.00 0.00 0.00 3.01
117 118 1.967066 CGAGTAGGAGGCAAGATGGAT 59.033 52.381 0.00 0.00 0.00 3.41
118 119 1.342076 ACGAGTAGGAGGCAAGATGGA 60.342 52.381 0.00 0.00 0.00 3.41
119 120 1.115467 ACGAGTAGGAGGCAAGATGG 58.885 55.000 0.00 0.00 0.00 3.51
120 121 1.751351 TCACGAGTAGGAGGCAAGATG 59.249 52.381 0.00 0.00 0.00 2.90
121 122 2.145397 TCACGAGTAGGAGGCAAGAT 57.855 50.000 0.00 0.00 0.00 2.40
122 123 1.919240 TTCACGAGTAGGAGGCAAGA 58.081 50.000 0.00 0.00 0.00 3.02
123 124 2.796383 CGATTCACGAGTAGGAGGCAAG 60.796 54.545 0.00 0.00 45.77 4.01
124 125 1.134367 CGATTCACGAGTAGGAGGCAA 59.866 52.381 0.00 0.00 45.77 4.52
125 126 0.738975 CGATTCACGAGTAGGAGGCA 59.261 55.000 0.00 0.00 45.77 4.75
126 127 0.030908 CCGATTCACGAGTAGGAGGC 59.969 60.000 0.00 0.00 45.77 4.70
127 128 1.065701 CACCGATTCACGAGTAGGAGG 59.934 57.143 0.00 0.00 45.77 4.30
128 129 2.014857 TCACCGATTCACGAGTAGGAG 58.985 52.381 0.00 0.00 45.77 3.69
129 130 2.118313 TCACCGATTCACGAGTAGGA 57.882 50.000 0.00 0.00 45.77 2.94
130 131 2.543861 CCATCACCGATTCACGAGTAGG 60.544 54.545 0.00 0.00 45.77 3.18
131 132 2.099263 ACCATCACCGATTCACGAGTAG 59.901 50.000 0.00 0.00 45.77 2.57
132 133 2.097036 ACCATCACCGATTCACGAGTA 58.903 47.619 0.00 0.00 45.77 2.59
133 134 0.895530 ACCATCACCGATTCACGAGT 59.104 50.000 0.00 0.00 45.77 4.18
134 135 1.560923 GACCATCACCGATTCACGAG 58.439 55.000 0.00 0.00 45.77 4.18
135 136 0.179148 CGACCATCACCGATTCACGA 60.179 55.000 0.00 0.00 45.77 4.35
136 137 1.752501 GCGACCATCACCGATTCACG 61.753 60.000 0.00 0.00 42.18 4.35
137 138 1.429148 GGCGACCATCACCGATTCAC 61.429 60.000 0.00 0.00 0.00 3.18
138 139 1.153449 GGCGACCATCACCGATTCA 60.153 57.895 0.00 0.00 0.00 2.57
139 140 2.237751 CGGCGACCATCACCGATTC 61.238 63.158 0.00 0.00 44.24 2.52
140 141 2.202878 CGGCGACCATCACCGATT 60.203 61.111 0.00 0.00 44.24 3.34
141 142 3.458163 ACGGCGACCATCACCGAT 61.458 61.111 16.62 0.00 44.24 4.18
142 143 4.429212 CACGGCGACCATCACCGA 62.429 66.667 16.62 0.00 44.24 4.69
144 145 2.869503 ATTCCACGGCGACCATCACC 62.870 60.000 16.62 0.00 0.00 4.02
145 146 1.429148 GATTCCACGGCGACCATCAC 61.429 60.000 16.62 0.00 0.00 3.06
146 147 1.153449 GATTCCACGGCGACCATCA 60.153 57.895 16.62 0.00 0.00 3.07
147 148 2.237751 CGATTCCACGGCGACCATC 61.238 63.158 16.62 8.39 0.00 3.51
148 149 2.202878 CGATTCCACGGCGACCAT 60.203 61.111 16.62 0.00 0.00 3.55
149 150 3.350909 CTCGATTCCACGGCGACCA 62.351 63.158 16.62 0.00 0.00 4.02
150 151 2.582498 CTCGATTCCACGGCGACC 60.582 66.667 16.62 0.00 0.00 4.79
151 152 3.255379 GCTCGATTCCACGGCGAC 61.255 66.667 16.62 0.00 0.00 5.19
152 153 4.508128 GGCTCGATTCCACGGCGA 62.508 66.667 16.62 0.00 33.07 5.54
153 154 4.514577 AGGCTCGATTCCACGGCG 62.515 66.667 4.80 4.80 33.07 6.46
154 155 2.125106 AAGGCTCGATTCCACGGC 60.125 61.111 6.63 0.00 0.00 5.68
155 156 0.528684 GAGAAGGCTCGATTCCACGG 60.529 60.000 6.63 0.00 0.00 4.94
156 157 0.528684 GGAGAAGGCTCGATTCCACG 60.529 60.000 6.63 0.00 42.25 4.94
157 158 0.827368 AGGAGAAGGCTCGATTCCAC 59.173 55.000 6.63 1.28 42.25 4.02
158 159 1.115467 GAGGAGAAGGCTCGATTCCA 58.885 55.000 6.63 0.00 42.25 3.53
159 160 0.031449 CGAGGAGAAGGCTCGATTCC 59.969 60.000 0.00 0.00 42.25 3.01
160 161 0.596341 GCGAGGAGAAGGCTCGATTC 60.596 60.000 0.00 0.00 42.25 2.52
161 162 1.439644 GCGAGGAGAAGGCTCGATT 59.560 57.895 0.00 0.00 42.25 3.34
162 163 2.494530 GGCGAGGAGAAGGCTCGAT 61.495 63.158 0.00 0.00 42.25 3.59
163 164 3.141488 GGCGAGGAGAAGGCTCGA 61.141 66.667 0.00 0.00 42.25 4.04
164 165 4.560856 CGGCGAGGAGAAGGCTCG 62.561 72.222 0.00 0.00 42.25 5.03
165 166 3.453679 ACGGCGAGGAGAAGGCTC 61.454 66.667 16.62 0.00 40.54 4.70
166 167 3.764466 CACGGCGAGGAGAAGGCT 61.764 66.667 16.62 0.00 0.00 4.58
167 168 4.821589 CCACGGCGAGGAGAAGGC 62.822 72.222 18.99 0.00 0.00 4.35
168 169 2.837371 GAACCACGGCGAGGAGAAGG 62.837 65.000 29.75 12.98 0.00 3.46
169 170 1.446272 GAACCACGGCGAGGAGAAG 60.446 63.158 29.75 3.07 0.00 2.85
170 171 2.204461 TGAACCACGGCGAGGAGAA 61.204 57.895 29.75 11.05 0.00 2.87
171 172 2.599281 TGAACCACGGCGAGGAGA 60.599 61.111 29.75 9.76 0.00 3.71
172 173 2.432628 GTGAACCACGGCGAGGAG 60.433 66.667 29.75 9.38 0.00 3.69
173 174 3.998672 GGTGAACCACGGCGAGGA 61.999 66.667 29.75 4.61 34.83 3.71
174 175 4.308458 TGGTGAACCACGGCGAGG 62.308 66.667 21.92 21.92 42.01 4.63
183 184 1.256812 CTTGTTCCCCATGGTGAACC 58.743 55.000 29.92 16.58 40.06 3.62
184 185 1.203001 TCCTTGTTCCCCATGGTGAAC 60.203 52.381 27.54 27.54 40.94 3.18
185 186 1.075374 CTCCTTGTTCCCCATGGTGAA 59.925 52.381 11.73 8.51 39.02 3.18
186 187 0.698238 CTCCTTGTTCCCCATGGTGA 59.302 55.000 11.73 0.58 39.02 4.02
187 188 0.698238 TCTCCTTGTTCCCCATGGTG 59.302 55.000 11.73 0.00 39.02 4.17
188 189 1.355720 CTTCTCCTTGTTCCCCATGGT 59.644 52.381 11.73 0.00 39.02 3.55
189 190 1.341383 CCTTCTCCTTGTTCCCCATGG 60.341 57.143 4.14 4.14 39.25 3.66
190 191 1.635487 TCCTTCTCCTTGTTCCCCATG 59.365 52.381 0.00 0.00 0.00 3.66
191 192 2.059756 TCCTTCTCCTTGTTCCCCAT 57.940 50.000 0.00 0.00 0.00 4.00
192 193 1.705186 CTTCCTTCTCCTTGTTCCCCA 59.295 52.381 0.00 0.00 0.00 4.96
193 194 1.614583 GCTTCCTTCTCCTTGTTCCCC 60.615 57.143 0.00 0.00 0.00 4.81
194 195 1.073923 TGCTTCCTTCTCCTTGTTCCC 59.926 52.381 0.00 0.00 0.00 3.97
195 196 2.554462 GTTGCTTCCTTCTCCTTGTTCC 59.446 50.000 0.00 0.00 0.00 3.62
196 197 3.214328 TGTTGCTTCCTTCTCCTTGTTC 58.786 45.455 0.00 0.00 0.00 3.18
197 198 3.297134 TGTTGCTTCCTTCTCCTTGTT 57.703 42.857 0.00 0.00 0.00 2.83
198 199 3.152341 CATGTTGCTTCCTTCTCCTTGT 58.848 45.455 0.00 0.00 0.00 3.16
199 200 2.490903 CCATGTTGCTTCCTTCTCCTTG 59.509 50.000 0.00 0.00 0.00 3.61
200 201 2.800250 CCATGTTGCTTCCTTCTCCTT 58.200 47.619 0.00 0.00 0.00 3.36
201 202 1.615384 GCCATGTTGCTTCCTTCTCCT 60.615 52.381 0.00 0.00 0.00 3.69
202 203 0.813821 GCCATGTTGCTTCCTTCTCC 59.186 55.000 0.00 0.00 0.00 3.71
203 204 0.449388 CGCCATGTTGCTTCCTTCTC 59.551 55.000 0.00 0.00 0.00 2.87
204 205 0.962356 CCGCCATGTTGCTTCCTTCT 60.962 55.000 0.00 0.00 0.00 2.85
205 206 0.960364 TCCGCCATGTTGCTTCCTTC 60.960 55.000 0.00 0.00 0.00 3.46
206 207 0.962356 CTCCGCCATGTTGCTTCCTT 60.962 55.000 0.00 0.00 0.00 3.36
207 208 1.377725 CTCCGCCATGTTGCTTCCT 60.378 57.895 0.00 0.00 0.00 3.36
208 209 2.409870 CCTCCGCCATGTTGCTTCC 61.410 63.158 0.00 0.00 0.00 3.46
209 210 3.056313 GCCTCCGCCATGTTGCTTC 62.056 63.158 0.00 0.00 0.00 3.86
210 211 3.064324 GCCTCCGCCATGTTGCTT 61.064 61.111 0.00 0.00 0.00 3.91
211 212 2.269520 TATGCCTCCGCCATGTTGCT 62.270 55.000 0.00 0.00 0.00 3.91
212 213 1.789078 CTATGCCTCCGCCATGTTGC 61.789 60.000 0.00 0.00 0.00 4.17
213 214 1.168407 CCTATGCCTCCGCCATGTTG 61.168 60.000 0.00 0.00 0.00 3.33
214 215 1.149174 CCTATGCCTCCGCCATGTT 59.851 57.895 0.00 0.00 0.00 2.71
215 216 2.822637 CCCTATGCCTCCGCCATGT 61.823 63.158 0.00 0.00 0.00 3.21
216 217 2.033141 CCCTATGCCTCCGCCATG 59.967 66.667 0.00 0.00 0.00 3.66
217 218 3.958860 GCCCTATGCCTCCGCCAT 61.959 66.667 0.00 0.00 0.00 4.40
227 228 3.631046 GAGCTCCCCCGCCCTATG 61.631 72.222 0.87 0.00 0.00 2.23
228 229 4.964241 GGAGCTCCCCCGCCCTAT 62.964 72.222 23.19 0.00 0.00 2.57
265 266 3.966026 GACTCTTCCACGCCGGACG 62.966 68.421 5.05 11.71 46.36 4.79
266 267 2.126031 GACTCTTCCACGCCGGAC 60.126 66.667 5.05 0.00 46.36 4.79
267 268 3.744719 CGACTCTTCCACGCCGGA 61.745 66.667 5.05 0.00 44.40 5.14
268 269 3.685214 CTCGACTCTTCCACGCCGG 62.685 68.421 0.00 0.00 0.00 6.13
269 270 2.202492 CTCGACTCTTCCACGCCG 60.202 66.667 0.00 0.00 0.00 6.46
270 271 2.507324 GCTCGACTCTTCCACGCC 60.507 66.667 0.00 0.00 0.00 5.68
271 272 1.515304 GAGCTCGACTCTTCCACGC 60.515 63.158 0.00 0.00 42.62 5.34
272 273 1.226156 CGAGCTCGACTCTTCCACG 60.226 63.158 32.06 0.00 43.85 4.94
273 274 0.098025 CTCGAGCTCGACTCTTCCAC 59.902 60.000 33.84 0.00 44.22 4.02
274 275 1.649390 GCTCGAGCTCGACTCTTCCA 61.649 60.000 33.84 12.12 44.22 3.53
275 276 1.063488 GCTCGAGCTCGACTCTTCC 59.937 63.158 33.84 14.10 44.22 3.46
276 277 0.169230 TTGCTCGAGCTCGACTCTTC 59.831 55.000 33.84 19.38 44.22 2.87
277 278 0.109504 GTTGCTCGAGCTCGACTCTT 60.110 55.000 33.84 0.00 44.22 2.85
278 279 0.958382 AGTTGCTCGAGCTCGACTCT 60.958 55.000 33.84 23.43 44.22 3.24
279 280 0.727970 TAGTTGCTCGAGCTCGACTC 59.272 55.000 33.84 26.20 44.22 3.36
280 281 0.730265 CTAGTTGCTCGAGCTCGACT 59.270 55.000 33.84 32.09 44.22 4.18
281 282 0.248296 CCTAGTTGCTCGAGCTCGAC 60.248 60.000 33.84 27.54 44.22 4.20
283 284 1.064946 CCCTAGTTGCTCGAGCTCG 59.935 63.158 35.27 30.03 42.66 5.03
284 285 0.818296 TTCCCTAGTTGCTCGAGCTC 59.182 55.000 35.27 26.75 42.66 4.09
285 286 1.205893 CTTTCCCTAGTTGCTCGAGCT 59.794 52.381 35.27 19.88 42.66 4.09
286 287 1.646189 CTTTCCCTAGTTGCTCGAGC 58.354 55.000 30.42 30.42 42.50 5.03
287 288 1.134670 CCCTTTCCCTAGTTGCTCGAG 60.135 57.143 8.45 8.45 0.00 4.04
288 289 0.902531 CCCTTTCCCTAGTTGCTCGA 59.097 55.000 0.00 0.00 0.00 4.04
289 290 0.107654 CCCCTTTCCCTAGTTGCTCG 60.108 60.000 0.00 0.00 0.00 5.03
290 291 0.256177 CCCCCTTTCCCTAGTTGCTC 59.744 60.000 0.00 0.00 0.00 4.26
291 292 0.178843 TCCCCCTTTCCCTAGTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
292 293 0.927029 ATCCCCCTTTCCCTAGTTGC 59.073 55.000 0.00 0.00 0.00 4.17
293 294 3.757947 AAATCCCCCTTTCCCTAGTTG 57.242 47.619 0.00 0.00 0.00 3.16
294 295 4.777877 AAAAATCCCCCTTTCCCTAGTT 57.222 40.909 0.00 0.00 0.00 2.24
295 296 4.232122 CCTAAAAATCCCCCTTTCCCTAGT 59.768 45.833 0.00 0.00 0.00 2.57
296 297 4.387550 CCCTAAAAATCCCCCTTTCCCTAG 60.388 50.000 0.00 0.00 0.00 3.02
297 298 3.534327 CCCTAAAAATCCCCCTTTCCCTA 59.466 47.826 0.00 0.00 0.00 3.53
298 299 2.317900 CCCTAAAAATCCCCCTTTCCCT 59.682 50.000 0.00 0.00 0.00 4.20
299 300 2.628559 CCCCTAAAAATCCCCCTTTCCC 60.629 54.545 0.00 0.00 0.00 3.97
300 301 2.628559 CCCCCTAAAAATCCCCCTTTCC 60.629 54.545 0.00 0.00 0.00 3.13
301 302 2.759355 CCCCCTAAAAATCCCCCTTTC 58.241 52.381 0.00 0.00 0.00 2.62
302 303 1.274184 GCCCCCTAAAAATCCCCCTTT 60.274 52.381 0.00 0.00 0.00 3.11
303 304 0.341961 GCCCCCTAAAAATCCCCCTT 59.658 55.000 0.00 0.00 0.00 3.95
304 305 0.557652 AGCCCCCTAAAAATCCCCCT 60.558 55.000 0.00 0.00 0.00 4.79
305 306 0.398522 CAGCCCCCTAAAAATCCCCC 60.399 60.000 0.00 0.00 0.00 5.40
306 307 0.338467 ACAGCCCCCTAAAAATCCCC 59.662 55.000 0.00 0.00 0.00 4.81
307 308 1.485124 CACAGCCCCCTAAAAATCCC 58.515 55.000 0.00 0.00 0.00 3.85
308 309 0.824109 GCACAGCCCCCTAAAAATCC 59.176 55.000 0.00 0.00 0.00 3.01
309 310 0.455815 CGCACAGCCCCCTAAAAATC 59.544 55.000 0.00 0.00 0.00 2.17
310 311 0.039035 TCGCACAGCCCCCTAAAAAT 59.961 50.000 0.00 0.00 0.00 1.82
311 312 0.891904 GTCGCACAGCCCCCTAAAAA 60.892 55.000 0.00 0.00 0.00 1.94
312 313 1.302993 GTCGCACAGCCCCCTAAAA 60.303 57.895 0.00 0.00 0.00 1.52
313 314 2.349755 GTCGCACAGCCCCCTAAA 59.650 61.111 0.00 0.00 0.00 1.85
314 315 2.925706 TGTCGCACAGCCCCCTAA 60.926 61.111 0.00 0.00 0.00 2.69
315 316 3.702048 GTGTCGCACAGCCCCCTA 61.702 66.667 5.30 0.00 34.08 3.53
322 323 4.742201 CTCCCCCGTGTCGCACAG 62.742 72.222 9.95 0.00 33.40 3.66
360 361 4.468689 GTAGCTCCCCCGCACCAC 62.469 72.222 0.00 0.00 0.00 4.16
393 394 4.834453 CAGCTCCCCTCTGCAGCG 62.834 72.222 9.47 1.71 38.26 5.18
398 399 4.463879 CCACGCAGCTCCCCTCTG 62.464 72.222 0.00 0.00 34.79 3.35
439 440 3.807538 CACCATGCGGCACAGCTC 61.808 66.667 4.03 0.00 38.13 4.09
442 443 3.740397 CACCACCATGCGGCACAG 61.740 66.667 4.03 1.53 34.57 3.66
449 450 4.408821 TCCTCCGCACCACCATGC 62.409 66.667 0.00 0.00 42.48 4.06
450 451 2.124983 CTCCTCCGCACCACCATG 60.125 66.667 0.00 0.00 0.00 3.66
451 452 4.101448 GCTCCTCCGCACCACCAT 62.101 66.667 0.00 0.00 0.00 3.55
453 454 4.767255 CAGCTCCTCCGCACCACC 62.767 72.222 0.00 0.00 0.00 4.61
468 469 3.793144 GACTCCAAAGCCGCGCAG 61.793 66.667 8.75 0.00 0.00 5.18
475 476 4.699522 ACCGGCCGACTCCAAAGC 62.700 66.667 30.73 0.00 0.00 3.51
476 477 2.742372 CACCGGCCGACTCCAAAG 60.742 66.667 30.73 9.82 0.00 2.77
477 478 3.524648 GACACCGGCCGACTCCAAA 62.525 63.158 30.73 0.00 0.00 3.28
478 479 3.998672 GACACCGGCCGACTCCAA 61.999 66.667 30.73 0.00 0.00 3.53
489 490 1.374252 CCAACTTCCTCCGACACCG 60.374 63.158 0.00 0.00 0.00 4.94
490 491 0.037232 CTCCAACTTCCTCCGACACC 60.037 60.000 0.00 0.00 0.00 4.16
491 492 0.037232 CCTCCAACTTCCTCCGACAC 60.037 60.000 0.00 0.00 0.00 3.67
492 493 1.192146 CCCTCCAACTTCCTCCGACA 61.192 60.000 0.00 0.00 0.00 4.35
493 494 1.597461 CCCTCCAACTTCCTCCGAC 59.403 63.158 0.00 0.00 0.00 4.79
494 495 1.612442 CCCCTCCAACTTCCTCCGA 60.612 63.158 0.00 0.00 0.00 4.55
495 496 2.670148 CCCCCTCCAACTTCCTCCG 61.670 68.421 0.00 0.00 0.00 4.63
496 497 1.229853 TCCCCCTCCAACTTCCTCC 60.230 63.158 0.00 0.00 0.00 4.30
497 498 0.547954 ACTCCCCCTCCAACTTCCTC 60.548 60.000 0.00 0.00 0.00 3.71
498 499 0.842467 CACTCCCCCTCCAACTTCCT 60.842 60.000 0.00 0.00 0.00 3.36
499 500 1.685820 CACTCCCCCTCCAACTTCC 59.314 63.158 0.00 0.00 0.00 3.46
500 501 1.002011 GCACTCCCCCTCCAACTTC 60.002 63.158 0.00 0.00 0.00 3.01
501 502 2.895424 CGCACTCCCCCTCCAACTT 61.895 63.158 0.00 0.00 0.00 2.66
502 503 3.322466 CGCACTCCCCCTCCAACT 61.322 66.667 0.00 0.00 0.00 3.16
503 504 4.410400 CCGCACTCCCCCTCCAAC 62.410 72.222 0.00 0.00 0.00 3.77
507 508 4.097361 GAACCCGCACTCCCCCTC 62.097 72.222 0.00 0.00 0.00 4.30
511 512 4.754667 GACCGAACCCGCACTCCC 62.755 72.222 0.00 0.00 0.00 4.30
518 519 4.992511 TTTGCCCGACCGAACCCG 62.993 66.667 0.00 0.00 0.00 5.28
519 520 3.359523 GTTTGCCCGACCGAACCC 61.360 66.667 0.00 0.00 0.00 4.11
520 521 1.969589 ATGTTTGCCCGACCGAACC 60.970 57.895 0.00 0.00 0.00 3.62
521 522 1.209127 CATGTTTGCCCGACCGAAC 59.791 57.895 0.00 0.00 0.00 3.95
522 523 0.535328 TTCATGTTTGCCCGACCGAA 60.535 50.000 0.00 0.00 0.00 4.30
523 524 0.953471 CTTCATGTTTGCCCGACCGA 60.953 55.000 0.00 0.00 0.00 4.69
524 525 1.501741 CTTCATGTTTGCCCGACCG 59.498 57.895 0.00 0.00 0.00 4.79
525 526 0.893727 ACCTTCATGTTTGCCCGACC 60.894 55.000 0.00 0.00 0.00 4.79
526 527 0.240945 CACCTTCATGTTTGCCCGAC 59.759 55.000 0.00 0.00 0.00 4.79
527 528 0.179004 ACACCTTCATGTTTGCCCGA 60.179 50.000 0.00 0.00 0.00 5.14
528 529 0.673437 AACACCTTCATGTTTGCCCG 59.327 50.000 0.00 0.00 39.86 6.13
554 555 1.068474 CTCGTCTCCGCGACATTTTT 58.932 50.000 8.23 0.00 42.98 1.94
555 556 0.038526 ACTCGTCTCCGCGACATTTT 60.039 50.000 8.23 0.00 42.98 1.82
556 557 0.038526 AACTCGTCTCCGCGACATTT 60.039 50.000 8.23 0.00 42.98 2.32
557 558 0.038526 AAACTCGTCTCCGCGACATT 60.039 50.000 8.23 0.00 42.98 2.71
558 559 0.038526 AAAACTCGTCTCCGCGACAT 60.039 50.000 8.23 0.00 42.98 3.06
559 560 0.249155 AAAAACTCGTCTCCGCGACA 60.249 50.000 8.23 0.00 42.98 4.35
560 561 0.433871 GAAAAACTCGTCTCCGCGAC 59.566 55.000 8.23 0.00 39.33 5.19
561 562 0.665369 GGAAAAACTCGTCTCCGCGA 60.665 55.000 8.23 0.00 39.22 5.87
562 563 1.779683 GGAAAAACTCGTCTCCGCG 59.220 57.895 0.00 0.00 0.00 6.46
563 564 1.779683 CGGAAAAACTCGTCTCCGC 59.220 57.895 0.00 0.00 43.83 5.54
565 566 1.426423 GTCCGGAAAAACTCGTCTCC 58.574 55.000 5.23 0.00 0.00 3.71
566 567 1.058404 CGTCCGGAAAAACTCGTCTC 58.942 55.000 5.23 0.00 0.00 3.36
567 568 0.319297 CCGTCCGGAAAAACTCGTCT 60.319 55.000 5.23 0.00 37.50 4.18
568 569 0.318955 TCCGTCCGGAAAAACTCGTC 60.319 55.000 5.23 0.00 42.05 4.20
569 570 0.319297 CTCCGTCCGGAAAAACTCGT 60.319 55.000 5.23 0.00 44.66 4.18
570 571 1.012486 CCTCCGTCCGGAAAAACTCG 61.012 60.000 5.23 3.90 44.66 4.18
571 572 0.672711 CCCTCCGTCCGGAAAAACTC 60.673 60.000 5.23 0.00 44.66 3.01
572 573 1.123246 TCCCTCCGTCCGGAAAAACT 61.123 55.000 5.23 0.00 44.66 2.66
573 574 0.672711 CTCCCTCCGTCCGGAAAAAC 60.673 60.000 5.23 0.00 44.66 2.43
574 575 1.123246 ACTCCCTCCGTCCGGAAAAA 61.123 55.000 5.23 0.00 44.66 1.94
575 576 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
576 577 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
577 578 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
578 579 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
579 580 3.217743 GCTACTCCCTCCGTCCGG 61.218 72.222 0.00 0.00 0.00 5.14
580 581 1.601419 TTTGCTACTCCCTCCGTCCG 61.601 60.000 0.00 0.00 0.00 4.79
581 582 0.831307 ATTTGCTACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
582 583 1.202545 GGATTTGCTACTCCCTCCGTC 60.203 57.143 0.00 0.00 0.00 4.79
583 584 0.831307 GGATTTGCTACTCCCTCCGT 59.169 55.000 0.00 0.00 0.00 4.69
584 585 0.249489 CGGATTTGCTACTCCCTCCG 60.249 60.000 0.00 0.00 39.58 4.63
585 586 0.533085 GCGGATTTGCTACTCCCTCC 60.533 60.000 0.00 0.00 0.00 4.30
586 587 0.466124 AGCGGATTTGCTACTCCCTC 59.534 55.000 0.00 0.00 45.14 4.30
587 588 0.912486 AAGCGGATTTGCTACTCCCT 59.088 50.000 0.00 0.00 46.60 4.20
588 589 1.751437 AAAGCGGATTTGCTACTCCC 58.249 50.000 0.00 0.00 46.60 4.30
589 590 3.242316 CGTAAAAGCGGATTTGCTACTCC 60.242 47.826 0.00 0.00 46.60 3.85
590 591 3.370061 ACGTAAAAGCGGATTTGCTACTC 59.630 43.478 0.00 0.00 46.60 2.59
591 592 3.332034 ACGTAAAAGCGGATTTGCTACT 58.668 40.909 0.00 0.00 46.60 2.57
592 593 3.734776 ACGTAAAAGCGGATTTGCTAC 57.265 42.857 0.00 0.00 46.60 3.58
609 610 6.135290 TGTCACTACTAGTTTTGTGTACGT 57.865 37.500 17.11 0.00 0.00 3.57
610 611 8.906636 ATATGTCACTACTAGTTTTGTGTACG 57.093 34.615 17.11 0.00 0.00 3.67
695 698 3.551046 CGACACTGATGCCATACTCTACC 60.551 52.174 0.00 0.00 0.00 3.18
717 720 5.632244 AAAAATGCTTTGAAATGCCCATC 57.368 34.783 0.00 0.00 0.00 3.51
740 743 3.205395 GTGCCCACACACAGCAAA 58.795 55.556 0.00 0.00 46.61 3.68
857 873 1.333636 CGGTGAGAAGCAGGGAGGAT 61.334 60.000 0.00 0.00 0.00 3.24
858 874 1.984570 CGGTGAGAAGCAGGGAGGA 60.985 63.158 0.00 0.00 0.00 3.71
876 895 1.383803 AGAGGGAGGTGGAGGATGC 60.384 63.158 0.00 0.00 0.00 3.91
885 904 2.781406 GGAGGTGGAGAGGGAGGT 59.219 66.667 0.00 0.00 0.00 3.85
895 914 1.104577 GCTAGAGAGGTCGGAGGTGG 61.105 65.000 0.00 0.00 0.00 4.61
1053 1088 0.534412 AGATGGACTTGCAGACGGAG 59.466 55.000 0.00 0.00 0.00 4.63
1402 1438 2.344025 ACGAACGGACCAAAGATTAGC 58.656 47.619 0.00 0.00 0.00 3.09
1405 1441 3.121738 AGAACGAACGGACCAAAGATT 57.878 42.857 0.00 0.00 0.00 2.40
1413 1449 1.289800 GCTCCCAAGAACGAACGGAC 61.290 60.000 0.00 0.00 0.00 4.79
1656 1692 1.541310 TTCCACGGCGAGATGAAGGT 61.541 55.000 16.62 0.00 0.00 3.50
1748 1784 1.030488 TCTCGACCATGAGGACCGAC 61.030 60.000 0.00 0.00 38.10 4.79
1751 1787 1.611491 GAGATCTCGACCATGAGGACC 59.389 57.143 7.04 0.00 38.69 4.46
1898 1934 2.418060 GCTCTTCTTCCTCCCTTTCTCG 60.418 54.545 0.00 0.00 0.00 4.04
1907 1943 1.209261 CCCCAAGAGCTCTTCTTCCTC 59.791 57.143 26.18 0.00 44.34 3.71
1972 2008 4.864334 CGGCAGGGGCATCCTCAC 62.864 72.222 0.00 0.00 46.12 3.51
2105 2147 0.248825 CCAGATCGGAAGCAGAGACG 60.249 60.000 0.00 0.00 36.56 4.18
2121 2163 4.322080 TCAGTACCTTATCATTCGCCAG 57.678 45.455 0.00 0.00 0.00 4.85
2175 2217 3.242549 CAGTGCTGTTCTCTGCATCTA 57.757 47.619 0.00 0.00 46.71 1.98
2193 2235 1.203758 TGCTGATTTGCTCAATGGCAG 59.796 47.619 0.00 0.00 43.39 4.85
2220 2276 8.441608 TCAAACACAAACAGTCAATTCAATTTG 58.558 29.630 0.00 0.00 34.10 2.32
2231 2292 5.310720 AGGAAGTTCAAACACAAACAGTC 57.689 39.130 5.01 0.00 0.00 3.51
2232 2293 5.944007 AGTAGGAAGTTCAAACACAAACAGT 59.056 36.000 5.01 0.00 0.00 3.55
2233 2294 6.093495 TCAGTAGGAAGTTCAAACACAAACAG 59.907 38.462 5.01 0.00 0.00 3.16
2234 2295 5.941058 TCAGTAGGAAGTTCAAACACAAACA 59.059 36.000 5.01 0.00 0.00 2.83
2236 2297 7.083875 CTTCAGTAGGAAGTTCAAACACAAA 57.916 36.000 5.01 0.00 46.49 2.83
2237 2298 6.677781 CTTCAGTAGGAAGTTCAAACACAA 57.322 37.500 5.01 0.00 46.49 3.33
2363 2426 7.439108 AGAGCTACAATTACCTACCAAGAAT 57.561 36.000 0.00 0.00 0.00 2.40
2375 2438 9.897744 CAGAATTTCAAACAAGAGCTACAATTA 57.102 29.630 0.00 0.00 0.00 1.40
2396 2459 7.977853 CCTGCAAAAGCAAATAATACTCAGAAT 59.022 33.333 0.00 0.00 0.00 2.40
2398 2461 6.127647 CCCTGCAAAAGCAAATAATACTCAGA 60.128 38.462 0.00 0.00 0.00 3.27
2401 2464 6.207691 TCCCTGCAAAAGCAAATAATACTC 57.792 37.500 0.00 0.00 0.00 2.59
2404 2467 6.683610 GCTGATCCCTGCAAAAGCAAATAATA 60.684 38.462 0.00 0.00 37.23 0.98
2407 2470 3.119029 GCTGATCCCTGCAAAAGCAAATA 60.119 43.478 0.00 0.00 37.23 1.40
2408 2471 2.354403 GCTGATCCCTGCAAAAGCAAAT 60.354 45.455 0.00 0.00 37.23 2.32
2410 2473 0.604578 GCTGATCCCTGCAAAAGCAA 59.395 50.000 0.00 0.00 37.23 3.91
2412 2475 2.269978 TGCTGATCCCTGCAAAAGC 58.730 52.632 3.20 0.00 42.92 3.51
2417 2480 2.158711 CCTCTATTTGCTGATCCCTGCA 60.159 50.000 1.74 1.74 43.94 4.41
2431 2500 3.950395 GCTTTGTTGAGATGGCCTCTATT 59.050 43.478 3.32 0.00 42.44 1.73
2434 2503 1.353694 AGCTTTGTTGAGATGGCCTCT 59.646 47.619 3.32 4.09 42.44 3.69
2572 2661 1.679153 CCCTGCAAAAACCAGTAACGT 59.321 47.619 0.00 0.00 0.00 3.99
2609 2698 2.682136 TCGATCACGCCTTCCCCA 60.682 61.111 0.00 0.00 39.58 4.96
2772 2861 0.258774 AGGCTCTCCTGGACTCTCTC 59.741 60.000 0.00 0.00 42.34 3.20
2776 2865 2.983512 TCAAGGCTCTCCTGGACTC 58.016 57.895 0.00 0.00 43.40 3.36
2897 2986 2.939103 GACAGTGCTTTCTCACACAAGT 59.061 45.455 0.00 0.00 39.30 3.16
2898 2987 3.201290 AGACAGTGCTTTCTCACACAAG 58.799 45.455 0.00 0.00 39.30 3.16
2935 3026 7.609760 TGAACCATCATAAGTACATCACAAC 57.390 36.000 0.00 0.00 0.00 3.32
2937 3028 8.676401 CAATTGAACCATCATAAGTACATCACA 58.324 33.333 0.00 0.00 34.96 3.58
2938 3029 8.677300 ACAATTGAACCATCATAAGTACATCAC 58.323 33.333 13.59 0.00 34.96 3.06
2939 3030 8.806429 ACAATTGAACCATCATAAGTACATCA 57.194 30.769 13.59 0.00 34.96 3.07
3031 3126 8.220559 ACTATTAACCAAGGTGCTCATCAATAT 58.779 33.333 0.00 0.00 0.00 1.28
3052 3147 8.275187 TGTTATCAACCCTGGATGATACTATT 57.725 34.615 13.80 0.00 38.82 1.73
3053 3148 7.527868 GCTGTTATCAACCCTGGATGATACTAT 60.528 40.741 13.80 0.00 38.82 2.12
3054 3149 6.239600 GCTGTTATCAACCCTGGATGATACTA 60.240 42.308 13.80 7.00 38.82 1.82
3055 3150 5.455326 GCTGTTATCAACCCTGGATGATACT 60.455 44.000 13.80 0.00 38.82 2.12
3057 3152 4.660303 AGCTGTTATCAACCCTGGATGATA 59.340 41.667 10.99 10.99 38.35 2.15
3058 3153 3.461085 AGCTGTTATCAACCCTGGATGAT 59.539 43.478 12.78 12.78 40.09 2.45
3059 3154 2.846206 AGCTGTTATCAACCCTGGATGA 59.154 45.455 0.00 0.00 0.00 2.92
3060 3155 3.209410 GAGCTGTTATCAACCCTGGATG 58.791 50.000 0.00 0.00 0.00 3.51
3061 3156 2.173569 GGAGCTGTTATCAACCCTGGAT 59.826 50.000 0.00 0.00 0.00 3.41
3062 3157 1.559682 GGAGCTGTTATCAACCCTGGA 59.440 52.381 0.00 0.00 0.00 3.86
3063 3158 1.281867 TGGAGCTGTTATCAACCCTGG 59.718 52.381 0.00 0.00 0.00 4.45
3064 3159 2.787473 TGGAGCTGTTATCAACCCTG 57.213 50.000 0.00 0.00 0.00 4.45
3065 3160 2.912956 TCTTGGAGCTGTTATCAACCCT 59.087 45.455 0.00 0.00 0.00 4.34
3066 3161 3.350219 TCTTGGAGCTGTTATCAACCC 57.650 47.619 0.00 0.00 0.00 4.11
3067 3162 4.775236 AGATCTTGGAGCTGTTATCAACC 58.225 43.478 0.00 0.00 0.00 3.77
3068 3163 6.749923 AAAGATCTTGGAGCTGTTATCAAC 57.250 37.500 9.17 0.00 0.00 3.18
3069 3164 8.321353 TCTAAAAGATCTTGGAGCTGTTATCAA 58.679 33.333 9.17 0.00 29.14 2.57
3070 3165 7.766278 GTCTAAAAGATCTTGGAGCTGTTATCA 59.234 37.037 9.17 0.00 29.14 2.15
3071 3166 7.984617 AGTCTAAAAGATCTTGGAGCTGTTATC 59.015 37.037 9.17 0.00 29.14 1.75
3072 3167 7.768120 CAGTCTAAAAGATCTTGGAGCTGTTAT 59.232 37.037 9.17 0.00 29.14 1.89
3073 3168 7.099764 CAGTCTAAAAGATCTTGGAGCTGTTA 58.900 38.462 9.17 1.27 28.03 2.41
3074 3169 5.936956 CAGTCTAAAAGATCTTGGAGCTGTT 59.063 40.000 9.17 0.00 30.24 3.16
3075 3170 5.486526 CAGTCTAAAAGATCTTGGAGCTGT 58.513 41.667 9.17 0.00 0.00 4.40
3076 3171 4.332268 GCAGTCTAAAAGATCTTGGAGCTG 59.668 45.833 21.51 21.51 0.00 4.24
3077 3172 4.019860 TGCAGTCTAAAAGATCTTGGAGCT 60.020 41.667 9.17 8.02 0.00 4.09
3078 3173 4.256920 TGCAGTCTAAAAGATCTTGGAGC 58.743 43.478 9.17 9.02 0.00 4.70
3079 3174 6.111382 TCATGCAGTCTAAAAGATCTTGGAG 58.889 40.000 9.17 9.44 0.00 3.86
3080 3175 6.053632 TCATGCAGTCTAAAAGATCTTGGA 57.946 37.500 9.17 5.42 0.00 3.53
3081 3176 6.748333 TTCATGCAGTCTAAAAGATCTTGG 57.252 37.500 9.17 3.02 0.00 3.61
3082 3177 9.932699 CTAATTCATGCAGTCTAAAAGATCTTG 57.067 33.333 9.17 0.00 0.00 3.02
3083 3178 9.896645 TCTAATTCATGCAGTCTAAAAGATCTT 57.103 29.630 0.88 0.88 0.00 2.40
3084 3179 9.896645 TTCTAATTCATGCAGTCTAAAAGATCT 57.103 29.630 0.00 0.00 0.00 2.75
3087 3182 8.400947 GCATTCTAATTCATGCAGTCTAAAAGA 58.599 33.333 10.75 0.00 44.49 2.52
3088 3183 8.557869 GCATTCTAATTCATGCAGTCTAAAAG 57.442 34.615 10.75 0.00 44.49 2.27
3098 3193 5.643664 TCAACACTGCATTCTAATTCATGC 58.356 37.500 9.29 9.29 45.20 4.06
3099 3194 5.742453 GCTCAACACTGCATTCTAATTCATG 59.258 40.000 0.00 0.00 0.00 3.07
3100 3195 5.416639 TGCTCAACACTGCATTCTAATTCAT 59.583 36.000 0.00 0.00 33.94 2.57
3101 3196 4.761227 TGCTCAACACTGCATTCTAATTCA 59.239 37.500 0.00 0.00 33.94 2.57
3102 3197 5.300969 TGCTCAACACTGCATTCTAATTC 57.699 39.130 0.00 0.00 33.94 2.17
3103 3198 5.416639 TCATGCTCAACACTGCATTCTAATT 59.583 36.000 0.00 0.00 46.29 1.40
3125 3227 3.128349 GAGCGTTTTGGACACTAGTTCA 58.872 45.455 0.00 0.00 0.00 3.18
3132 3234 8.138365 TCATAATATAAGAGCGTTTTGGACAC 57.862 34.615 0.00 0.00 0.00 3.67
3134 3236 8.488764 GTCTCATAATATAAGAGCGTTTTGGAC 58.511 37.037 0.00 0.00 0.00 4.02
3135 3237 7.381408 CGTCTCATAATATAAGAGCGTTTTGGA 59.619 37.037 0.00 0.00 0.00 3.53
3137 3239 7.381408 TCCGTCTCATAATATAAGAGCGTTTTG 59.619 37.037 0.00 0.00 31.69 2.44
3138 3240 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
3139 3241 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
3143 3245 7.101652 TCCATCCGTCTCATAATATAAGAGC 57.898 40.000 0.00 0.00 0.00 4.09
3146 3248 6.607600 TCCCTCCATCCGTCTCATAATATAAG 59.392 42.308 0.00 0.00 0.00 1.73
3147 3249 6.499436 TCCCTCCATCCGTCTCATAATATAA 58.501 40.000 0.00 0.00 0.00 0.98
3150 3252 4.397919 TCCCTCCATCCGTCTCATAATA 57.602 45.455 0.00 0.00 0.00 0.98
3154 3256 2.109229 AATCCCTCCATCCGTCTCAT 57.891 50.000 0.00 0.00 0.00 2.90
3155 3257 2.317040 GTAATCCCTCCATCCGTCTCA 58.683 52.381 0.00 0.00 0.00 3.27
3156 3258 1.619332 GGTAATCCCTCCATCCGTCTC 59.381 57.143 0.00 0.00 0.00 3.36
3157 3259 1.062428 TGGTAATCCCTCCATCCGTCT 60.062 52.381 0.00 0.00 0.00 4.18
3158 3260 1.420430 TGGTAATCCCTCCATCCGTC 58.580 55.000 0.00 0.00 0.00 4.79
3161 3263 3.897505 CCAAATTGGTAATCCCTCCATCC 59.102 47.826 3.34 0.00 33.50 3.51
3210 3443 4.881019 TCTCTGCAAGTTAGAAGAGCTT 57.119 40.909 0.00 0.00 40.53 3.74
3211 3444 4.039730 TGTTCTCTGCAAGTTAGAAGAGCT 59.960 41.667 0.00 0.00 40.53 4.09
3251 3484 1.459592 CAAAGCTTGCTGATTTGCTGC 59.540 47.619 0.00 0.00 43.62 5.25
3279 3520 6.776287 GAATTCAATTCAATTGCATACTGCGC 60.776 38.462 5.12 0.00 41.72 6.09
3280 3521 6.253942 TGAATTCAATTCAATTGCATACTGCG 59.746 34.615 10.55 0.00 45.49 5.18
3319 3563 7.009550 TGATGCTTAATCCTCTCTCTATGAGT 58.990 38.462 0.00 0.00 37.99 3.41
3336 3580 7.674120 AGTGTCATAGCTGAATATGATGCTTA 58.326 34.615 0.00 0.00 42.54 3.09
3376 3620 3.761218 AGTATCAGGATCATAGAGTGCGG 59.239 47.826 0.00 0.00 0.00 5.69
3385 3629 4.040217 GCTTGACTGGAGTATCAGGATCAT 59.960 45.833 0.00 0.00 38.98 2.45
3408 3652 6.863645 ACGAGACGGATTGATTGATTACATAG 59.136 38.462 0.00 0.00 0.00 2.23
3429 3673 7.634809 TGACTTAGACGAGTATATGTACGAG 57.365 40.000 0.00 0.00 35.92 4.18
3439 3683 8.483307 ACTTTTGTTTTTGACTTAGACGAGTA 57.517 30.769 0.00 0.00 0.00 2.59
3448 3692 8.301002 TGCACTACTTACTTTTGTTTTTGACTT 58.699 29.630 0.00 0.00 0.00 3.01
3449 3693 7.822658 TGCACTACTTACTTTTGTTTTTGACT 58.177 30.769 0.00 0.00 0.00 3.41
3450 3694 7.753580 ACTGCACTACTTACTTTTGTTTTTGAC 59.246 33.333 0.00 0.00 0.00 3.18
3463 3707 7.806487 TGATATAATACGCACTGCACTACTTAC 59.194 37.037 1.11 0.00 0.00 2.34
3464 3708 7.878036 TGATATAATACGCACTGCACTACTTA 58.122 34.615 1.11 0.00 0.00 2.24
3504 3750 3.894759 AGGCATCAGCACAATATCAGTT 58.105 40.909 0.00 0.00 44.61 3.16
3557 3803 6.820656 AGCAGTAATCTTTAGACAATGGTCAG 59.179 38.462 2.34 0.00 46.80 3.51
3559 3805 6.019479 CGAGCAGTAATCTTTAGACAATGGTC 60.019 42.308 0.00 0.00 44.66 4.02
3680 3930 2.262774 ATCTTCAGAGGCTTGGGCGG 62.263 60.000 0.00 0.00 39.81 6.13
3747 3997 1.901833 TCTCATGCTACTTGTGGCTCA 59.098 47.619 10.26 0.00 0.00 4.26
3764 4014 4.848357 TCCATCCATTCTCCTGTTTTCTC 58.152 43.478 0.00 0.00 0.00 2.87
3767 4017 7.418254 GCATTAATCCATCCATTCTCCTGTTTT 60.418 37.037 0.00 0.00 0.00 2.43
3771 4021 5.322754 AGCATTAATCCATCCATTCTCCTG 58.677 41.667 0.00 0.00 0.00 3.86
3773 4023 4.704057 GGAGCATTAATCCATCCATTCTCC 59.296 45.833 5.58 0.00 36.79 3.71
3819 4072 5.120363 GGTCACGATTCACTCTTTTAGTTCC 59.880 44.000 0.00 0.00 35.76 3.62
3826 4080 3.862642 GCTCAGGTCACGATTCACTCTTT 60.863 47.826 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.