Multiple sequence alignment - TraesCS5B01G360300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G360300 chr5B 100.000 2450 0 0 1 2450 539933709 539936158 0.000000e+00 4525.0
1 TraesCS5B01G360300 chr5A 84.866 1685 140 60 28 1672 559744831 559746440 0.000000e+00 1592.0
2 TraesCS5B01G360300 chr5A 88.356 438 26 12 2018 2449 559746571 559746989 1.010000e-138 503.0
3 TraesCS5B01G360300 chr5A 97.436 39 1 0 1891 1929 469056945 469056983 1.570000e-07 67.6
4 TraesCS5B01G360300 chr5A 94.872 39 2 0 1891 1929 600428296 600428258 7.320000e-06 62.1
5 TraesCS5B01G360300 chr5A 92.683 41 3 0 1891 1931 32667773 32667813 2.630000e-05 60.2
6 TraesCS5B01G360300 chr5D 89.019 1284 81 27 625 1886 443502910 443504155 0.000000e+00 1535.0
7 TraesCS5B01G360300 chr5D 89.569 1045 51 21 167 1169 25520637 25521665 0.000000e+00 1273.0
8 TraesCS5B01G360300 chr5D 93.905 443 17 5 2010 2449 443504366 443504801 0.000000e+00 660.0
9 TraesCS5B01G360300 chr5D 85.572 603 44 20 7 580 443502320 443502908 2.100000e-165 592.0
10 TraesCS5B01G360300 chr1A 88.654 1040 70 26 167 1169 212156877 212155849 0.000000e+00 1223.0
11 TraesCS5B01G360300 chr4A 89.061 841 51 17 365 1169 519262703 519261868 0.000000e+00 1005.0
12 TraesCS5B01G360300 chr4A 87.981 208 18 5 167 373 519263807 519263606 3.150000e-59 239.0
13 TraesCS5B01G360300 chr3D 85.714 574 35 20 167 709 350069696 350070253 1.640000e-156 562.0
14 TraesCS5B01G360300 chr3D 92.635 353 15 3 828 1169 350070246 350070598 4.700000e-137 497.0
15 TraesCS5B01G360300 chr2D 84.696 575 40 22 166 709 80827807 80828364 4.640000e-147 531.0
16 TraesCS5B01G360300 chr2D 91.785 353 18 1 828 1169 80828357 80828709 4.740000e-132 481.0
17 TraesCS5B01G360300 chr2B 84.514 381 35 15 167 533 35048739 35048369 3.000000e-94 355.0
18 TraesCS5B01G360300 chr6A 85.621 306 23 13 167 466 587389773 587390063 3.960000e-78 302.0
19 TraesCS5B01G360300 chr6B 88.889 153 17 0 632 784 99588437 99588589 3.220000e-44 189.0
20 TraesCS5B01G360300 chr6B 88.235 153 18 0 632 784 711837570 711837722 1.500000e-42 183.0
21 TraesCS5B01G360300 chr1B 87.500 168 13 5 173 332 184481519 184481352 1.160000e-43 187.0
22 TraesCS5B01G360300 chr1B 95.122 41 2 0 1891 1931 664075145 664075105 5.650000e-07 65.8
23 TraesCS5B01G360300 chr1B 92.683 41 3 0 1891 1931 616616784 616616824 2.630000e-05 60.2
24 TraesCS5B01G360300 chr4D 94.872 39 2 0 1891 1929 471964238 471964200 7.320000e-06 62.1
25 TraesCS5B01G360300 chr7A 97.143 35 1 0 1896 1930 700690052 700690086 2.630000e-05 60.2
26 TraesCS5B01G360300 chr2A 92.683 41 3 0 1891 1931 683725672 683725712 2.630000e-05 60.2
27 TraesCS5B01G360300 chrUn 87.500 48 2 1 1883 1930 50621233 50621276 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G360300 chr5B 539933709 539936158 2449 False 4525.0 4525 100.000000 1 2450 1 chr5B.!!$F1 2449
1 TraesCS5B01G360300 chr5A 559744831 559746989 2158 False 1047.5 1592 86.611000 28 2449 2 chr5A.!!$F3 2421
2 TraesCS5B01G360300 chr5D 25520637 25521665 1028 False 1273.0 1273 89.569000 167 1169 1 chr5D.!!$F1 1002
3 TraesCS5B01G360300 chr5D 443502320 443504801 2481 False 929.0 1535 89.498667 7 2449 3 chr5D.!!$F2 2442
4 TraesCS5B01G360300 chr1A 212155849 212156877 1028 True 1223.0 1223 88.654000 167 1169 1 chr1A.!!$R1 1002
5 TraesCS5B01G360300 chr4A 519261868 519263807 1939 True 622.0 1005 88.521000 167 1169 2 chr4A.!!$R1 1002
6 TraesCS5B01G360300 chr3D 350069696 350070598 902 False 529.5 562 89.174500 167 1169 2 chr3D.!!$F1 1002
7 TraesCS5B01G360300 chr2D 80827807 80828709 902 False 506.0 531 88.240500 166 1169 2 chr2D.!!$F1 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 364 0.033991 TCTCTCTCCTCTGAACCCCG 60.034 60.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 3464 0.106819 CTTCTCAGATGCCAAGGGGG 60.107 60.0 0.0 0.0 40.85 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.016838 TGCATGGGCTAGGCAAAC 57.983 55.556 19.14 4.37 44.07 2.93
52 53 0.541530 TGCATGGGCTAGGCAAACAA 60.542 50.000 19.14 0.00 44.07 2.83
53 54 0.826062 GCATGGGCTAGGCAAACAAT 59.174 50.000 19.14 0.53 35.80 2.71
54 55 1.472026 GCATGGGCTAGGCAAACAATG 60.472 52.381 19.14 13.17 35.80 2.82
56 57 2.008242 TGGGCTAGGCAAACAATGTT 57.992 45.000 19.14 0.00 0.00 2.71
57 58 1.617850 TGGGCTAGGCAAACAATGTTG 59.382 47.619 19.14 0.00 0.00 3.33
58 59 1.066929 GGGCTAGGCAAACAATGTTGG 60.067 52.381 19.14 0.00 0.00 3.77
60 61 1.618343 GCTAGGCAAACAATGTTGGGT 59.382 47.619 0.00 0.00 0.00 4.51
95 97 2.029380 GGCCTCAAACCCAAACATACAC 60.029 50.000 0.00 0.00 0.00 2.90
96 98 2.351350 GCCTCAAACCCAAACATACACG 60.351 50.000 0.00 0.00 0.00 4.49
254 263 4.537433 GCCCCGCTCGCATCTTCT 62.537 66.667 0.00 0.00 0.00 2.85
347 364 0.033991 TCTCTCTCCTCTGAACCCCG 60.034 60.000 0.00 0.00 0.00 5.73
407 1335 1.609635 TTATCGCAGGTTGGCTCCGA 61.610 55.000 0.00 0.00 0.00 4.55
428 1356 2.743752 CGGCGTGGTGAATCTGCAG 61.744 63.158 7.63 7.63 0.00 4.41
429 1357 2.482374 GCGTGGTGAATCTGCAGC 59.518 61.111 9.47 0.00 36.84 5.25
430 1358 2.780643 CGTGGTGAATCTGCAGCG 59.219 61.111 9.47 0.00 39.04 5.18
480 1412 6.248433 ACAGAAATACCATCCATCTGTTGTT 58.752 36.000 1.13 0.00 46.22 2.83
502 1443 0.976641 TTTCTGTGACCAGATCCGCT 59.023 50.000 0.00 0.00 46.80 5.52
510 1451 2.027314 CAGATCCGCTCCTGCTCG 59.973 66.667 0.00 0.00 36.97 5.03
541 1487 0.110486 ACCTGTTCGACCCATTGCTT 59.890 50.000 0.00 0.00 0.00 3.91
569 1527 1.666553 CACCAAACGGTAGCGCAGA 60.667 57.895 15.35 0.00 33.92 4.26
580 1538 3.078097 GGTAGCGCAGAGATAGATGAGA 58.922 50.000 11.47 0.00 0.00 3.27
581 1539 3.126858 GGTAGCGCAGAGATAGATGAGAG 59.873 52.174 11.47 0.00 0.00 3.20
582 1540 3.138884 AGCGCAGAGATAGATGAGAGA 57.861 47.619 11.47 0.00 0.00 3.10
630 1608 3.423123 CGTGTTTGTTCCTTAGACGATGC 60.423 47.826 0.00 0.00 0.00 3.91
631 1609 3.746492 GTGTTTGTTCCTTAGACGATGCT 59.254 43.478 0.00 0.00 0.00 3.79
632 1610 3.745975 TGTTTGTTCCTTAGACGATGCTG 59.254 43.478 0.00 0.00 0.00 4.41
633 1611 3.678056 TTGTTCCTTAGACGATGCTGT 57.322 42.857 0.00 0.00 0.00 4.40
634 1612 2.959516 TGTTCCTTAGACGATGCTGTG 58.040 47.619 0.00 0.00 0.00 3.66
635 1613 1.661112 GTTCCTTAGACGATGCTGTGC 59.339 52.381 0.00 0.00 0.00 4.57
636 1614 0.175760 TCCTTAGACGATGCTGTGCC 59.824 55.000 0.00 0.00 0.00 5.01
637 1615 0.811616 CCTTAGACGATGCTGTGCCC 60.812 60.000 0.00 0.00 0.00 5.36
638 1616 1.148157 CTTAGACGATGCTGTGCCCG 61.148 60.000 0.00 0.00 0.00 6.13
639 1617 3.716539 TAGACGATGCTGTGCCCGC 62.717 63.158 0.00 0.00 0.00 6.13
643 1621 3.503363 GATGCTGTGCCCGCTGTC 61.503 66.667 0.00 0.00 0.00 3.51
646 1624 4.082523 GCTGTGCCCGCTGTCCTA 62.083 66.667 0.00 0.00 0.00 2.94
647 1625 2.125512 CTGTGCCCGCTGTCCTAC 60.126 66.667 0.00 0.00 0.00 3.18
648 1626 2.603473 TGTGCCCGCTGTCCTACT 60.603 61.111 0.00 0.00 0.00 2.57
649 1627 2.125512 GTGCCCGCTGTCCTACTG 60.126 66.667 0.00 0.00 0.00 2.74
673 1651 1.967066 TGATGGCCAACAAATTCGGTT 59.033 42.857 14.14 0.00 0.00 4.44
681 1659 5.465935 GCCAACAAATTCGGTTCATCTTTA 58.534 37.500 0.00 0.00 0.00 1.85
737 1715 0.391263 GGGAGATTTCGCGGTTCACT 60.391 55.000 6.13 0.00 0.00 3.41
739 1717 0.095417 GAGATTTCGCGGTTCACTGC 59.905 55.000 6.13 0.18 44.53 4.40
763 1742 2.043992 TGAAGGAACTCGGTTTCTCCA 58.956 47.619 0.00 0.00 38.49 3.86
814 1798 5.645624 TGAAAGAAAATTTCGCAGTTCACA 58.354 33.333 0.00 0.00 34.02 3.58
877 1867 2.869233 AAAACATCACCATATGCCGC 57.131 45.000 0.00 0.00 0.00 6.53
908 1898 3.689347 TCCAGATGTTTGGTTCAGATGG 58.311 45.455 0.00 0.00 39.35 3.51
932 1922 3.503363 TCATTTCTCTCGCATTGCTTGTT 59.497 39.130 7.12 0.00 0.00 2.83
933 1923 3.988379 TTTCTCTCGCATTGCTTGTTT 57.012 38.095 7.12 0.00 0.00 2.83
934 1924 2.975410 TCTCTCGCATTGCTTGTTTG 57.025 45.000 7.12 0.00 0.00 2.93
935 1925 1.069022 TCTCTCGCATTGCTTGTTTGC 60.069 47.619 7.12 0.00 0.00 3.68
936 1926 0.039256 TCTCGCATTGCTTGTTTGCC 60.039 50.000 7.12 0.00 32.76 4.52
937 1927 1.006337 TCGCATTGCTTGTTTGCCC 60.006 52.632 7.12 0.00 32.76 5.36
938 1928 1.300775 CGCATTGCTTGTTTGCCCA 60.301 52.632 7.12 0.00 32.76 5.36
939 1929 1.559149 CGCATTGCTTGTTTGCCCAC 61.559 55.000 7.12 0.00 32.76 4.61
940 1930 1.559149 GCATTGCTTGTTTGCCCACG 61.559 55.000 0.16 0.00 0.00 4.94
941 1931 1.300853 ATTGCTTGTTTGCCCACGC 60.301 52.632 0.00 0.00 0.00 5.34
942 1932 2.025767 ATTGCTTGTTTGCCCACGCA 62.026 50.000 0.00 0.00 45.49 5.24
980 1986 5.237344 CCTGTAGGCATTTGTTATAGACAGC 59.763 44.000 0.00 0.00 39.94 4.40
1029 2046 4.635765 TGCTATTGCATAGAAACTCACACC 59.364 41.667 0.00 0.00 45.31 4.16
1239 2257 5.120363 GGTCACGATTCACTCTTTTAGTTCC 59.880 44.000 0.00 0.00 35.76 3.62
1251 2270 8.197439 CACTCTTTTAGTTCCCTGAATGTTTTT 58.803 33.333 0.00 0.00 35.76 1.94
1284 2303 5.319453 TGGAGCATTAATCCATCCATTCTC 58.681 41.667 8.18 0.00 41.96 2.87
1286 2305 5.516238 GGAGCATTAATCCATCCATTCTCCT 60.516 44.000 0.00 0.00 36.79 3.69
1294 2315 4.848357 TCCATCCATTCTCCTGTTTTCTC 58.152 43.478 0.00 0.00 0.00 2.87
1311 2332 1.901833 TCTCATGCTACTTGTGGCTCA 59.098 47.619 10.26 0.00 0.00 4.26
1378 2399 2.262774 ATCTTCAGAGGCTTGGGCGG 62.263 60.000 0.00 0.00 39.81 6.13
1499 2524 6.019479 CGAGCAGTAATCTTTAGACAATGGTC 60.019 42.308 0.00 0.00 44.66 4.02
1501 2526 6.820656 AGCAGTAATCTTTAGACAATGGTCAG 59.179 38.462 2.34 0.00 46.80 3.51
1554 2579 3.894759 AGGCATCAGCACAATATCAGTT 58.105 40.909 0.00 0.00 44.61 3.16
1593 2618 6.745116 TGATATAATACGCACTGCACTACTT 58.255 36.000 1.11 0.00 0.00 2.24
1594 2619 7.878036 TGATATAATACGCACTGCACTACTTA 58.122 34.615 1.11 0.00 0.00 2.24
1595 2620 7.806487 TGATATAATACGCACTGCACTACTTAC 59.194 37.037 1.11 0.00 0.00 2.34
1608 2635 7.753580 ACTGCACTACTTACTTTTGTTTTTGAC 59.246 33.333 0.00 0.00 0.00 3.18
1609 2636 7.822658 TGCACTACTTACTTTTGTTTTTGACT 58.177 30.769 0.00 0.00 0.00 3.41
1619 2646 8.483307 ACTTTTGTTTTTGACTTAGACGAGTA 57.517 30.769 0.00 0.00 0.00 2.59
1627 2654 9.494479 TTTTTGACTTAGACGAGTATATGTACG 57.506 33.333 0.00 0.00 35.92 3.67
1629 2656 7.634809 TGACTTAGACGAGTATATGTACGAG 57.365 40.000 0.00 0.00 35.92 4.18
1650 2677 6.863645 ACGAGACGGATTGATTGATTACATAG 59.136 38.462 0.00 0.00 0.00 2.23
1673 2700 4.040217 GCTTGACTGGAGTATCAGGATCAT 59.960 45.833 0.00 0.00 38.98 2.45
1682 2709 3.761218 AGTATCAGGATCATAGAGTGCGG 59.239 47.826 0.00 0.00 0.00 5.69
1722 2749 7.674120 AGTGTCATAGCTGAATATGATGCTTA 58.326 34.615 0.00 0.00 42.54 3.09
1739 2766 7.009550 TGATGCTTAATCCTCTCTCTATGAGT 58.990 38.462 0.00 0.00 37.99 3.41
1778 2808 6.253942 TGAATTCAATTCAATTGCATACTGCG 59.746 34.615 10.55 0.00 45.49 5.18
1779 2809 6.776287 GAATTCAATTCAATTGCATACTGCGC 60.776 38.462 5.12 0.00 41.72 6.09
1807 2845 1.459592 CAAAGCTTGCTGATTTGCTGC 59.540 47.619 0.00 0.00 43.62 5.25
1847 2885 4.039730 TGTTCTCTGCAAGTTAGAAGAGCT 59.960 41.667 0.00 0.00 40.53 4.09
1848 2886 4.881019 TCTCTGCAAGTTAGAAGAGCTT 57.119 40.909 0.00 0.00 40.53 3.74
1897 2935 3.897505 CCAAATTGGTAATCCCTCCATCC 59.102 47.826 3.34 0.00 33.50 3.51
1898 2936 3.508845 AATTGGTAATCCCTCCATCCG 57.491 47.619 0.00 0.00 33.50 4.18
1899 2937 1.887797 TTGGTAATCCCTCCATCCGT 58.112 50.000 0.00 0.00 33.50 4.69
1903 2941 2.317040 GTAATCCCTCCATCCGTCTCA 58.683 52.381 0.00 0.00 0.00 3.27
1904 2942 2.109229 AATCCCTCCATCCGTCTCAT 57.891 50.000 0.00 0.00 0.00 2.90
1905 2943 3.260269 AATCCCTCCATCCGTCTCATA 57.740 47.619 0.00 0.00 0.00 2.15
1906 2944 2.767644 TCCCTCCATCCGTCTCATAA 57.232 50.000 0.00 0.00 0.00 1.90
1908 2946 4.397919 TCCCTCCATCCGTCTCATAATA 57.602 45.455 0.00 0.00 0.00 0.98
1909 2947 4.947883 TCCCTCCATCCGTCTCATAATAT 58.052 43.478 0.00 0.00 0.00 1.28
1910 2948 6.087276 TCCCTCCATCCGTCTCATAATATA 57.913 41.667 0.00 0.00 0.00 0.86
1911 2949 6.499436 TCCCTCCATCCGTCTCATAATATAA 58.501 40.000 0.00 0.00 0.00 0.98
1912 2950 6.607600 TCCCTCCATCCGTCTCATAATATAAG 59.392 42.308 0.00 0.00 0.00 1.73
1913 2951 6.607600 CCCTCCATCCGTCTCATAATATAAGA 59.392 42.308 0.00 0.00 0.00 2.10
1914 2952 7.201866 CCCTCCATCCGTCTCATAATATAAGAG 60.202 44.444 0.00 0.00 0.00 2.85
1915 2953 7.101652 TCCATCCGTCTCATAATATAAGAGC 57.898 40.000 0.00 0.00 0.00 4.09
1916 2954 5.974158 CCATCCGTCTCATAATATAAGAGCG 59.026 44.000 0.00 0.00 0.00 5.03
1918 2956 6.570672 TCCGTCTCATAATATAAGAGCGTT 57.429 37.500 0.00 0.00 31.69 4.84
1919 2957 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
1920 2958 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
1922 2960 7.359264 CCGTCTCATAATATAAGAGCGTTTTGG 60.359 40.741 0.00 0.00 31.69 3.28
1923 2961 7.381408 CGTCTCATAATATAAGAGCGTTTTGGA 59.619 37.037 0.00 0.00 0.00 3.53
1925 2963 8.201464 TCTCATAATATAAGAGCGTTTTGGACA 58.799 33.333 0.00 0.00 0.00 4.02
1926 2964 8.138365 TCATAATATAAGAGCGTTTTGGACAC 57.862 34.615 0.00 0.00 0.00 3.67
1933 3102 3.128349 GAGCGTTTTGGACACTAGTTCA 58.872 45.455 0.00 0.00 0.00 3.18
1946 3115 3.070018 ACTAGTTCATGCTCAACACTGC 58.930 45.455 0.00 0.00 0.00 4.40
1950 3119 3.057736 AGTTCATGCTCAACACTGCATTC 60.058 43.478 0.00 0.00 46.29 2.67
1952 3121 3.941573 TCATGCTCAACACTGCATTCTA 58.058 40.909 0.00 0.00 46.29 2.10
1953 3122 4.325972 TCATGCTCAACACTGCATTCTAA 58.674 39.130 0.00 0.00 46.29 2.10
1954 3123 4.945543 TCATGCTCAACACTGCATTCTAAT 59.054 37.500 0.00 0.00 46.29 1.73
1956 3125 5.300969 TGCTCAACACTGCATTCTAATTC 57.699 39.130 0.00 0.00 33.94 2.17
1957 3126 4.761227 TGCTCAACACTGCATTCTAATTCA 59.239 37.500 0.00 0.00 33.94 2.57
1959 3128 5.742453 GCTCAACACTGCATTCTAATTCATG 59.258 40.000 0.00 0.00 0.00 3.07
1960 3129 5.643664 TCAACACTGCATTCTAATTCATGC 58.356 37.500 9.29 9.29 45.20 4.06
1970 3139 8.557869 GCATTCTAATTCATGCAGTCTAAAAG 57.442 34.615 10.75 0.00 44.49 2.27
1971 3140 8.400947 GCATTCTAATTCATGCAGTCTAAAAGA 58.599 33.333 10.75 0.00 44.49 2.52
1974 3143 9.896645 TTCTAATTCATGCAGTCTAAAAGATCT 57.103 29.630 0.00 0.00 0.00 2.75
1975 3144 9.896645 TCTAATTCATGCAGTCTAAAAGATCTT 57.103 29.630 0.88 0.88 0.00 2.40
1976 3145 9.932699 CTAATTCATGCAGTCTAAAAGATCTTG 57.067 33.333 9.17 0.00 0.00 3.02
1977 3146 6.748333 TTCATGCAGTCTAAAAGATCTTGG 57.252 37.500 9.17 3.02 0.00 3.61
1978 3147 6.053632 TCATGCAGTCTAAAAGATCTTGGA 57.946 37.500 9.17 5.42 0.00 3.53
1979 3148 6.111382 TCATGCAGTCTAAAAGATCTTGGAG 58.889 40.000 9.17 9.44 0.00 3.86
1980 3149 4.256920 TGCAGTCTAAAAGATCTTGGAGC 58.743 43.478 9.17 9.02 0.00 4.70
1981 3150 4.019860 TGCAGTCTAAAAGATCTTGGAGCT 60.020 41.667 9.17 8.02 0.00 4.09
1982 3151 4.332268 GCAGTCTAAAAGATCTTGGAGCTG 59.668 45.833 21.51 21.51 0.00 4.24
1983 3152 5.486526 CAGTCTAAAAGATCTTGGAGCTGT 58.513 41.667 9.17 0.00 0.00 4.40
1984 3153 5.936956 CAGTCTAAAAGATCTTGGAGCTGTT 59.063 40.000 9.17 0.00 30.24 3.16
1985 3154 7.099764 CAGTCTAAAAGATCTTGGAGCTGTTA 58.900 38.462 9.17 1.27 28.03 2.41
1986 3155 7.768120 CAGTCTAAAAGATCTTGGAGCTGTTAT 59.232 37.037 9.17 0.00 29.14 1.89
1987 3156 7.984617 AGTCTAAAAGATCTTGGAGCTGTTATC 59.015 37.037 9.17 0.00 29.14 1.75
1988 3157 7.766278 GTCTAAAAGATCTTGGAGCTGTTATCA 59.234 37.037 9.17 0.00 29.14 2.15
1989 3158 8.321353 TCTAAAAGATCTTGGAGCTGTTATCAA 58.679 33.333 9.17 0.00 29.14 2.57
1990 3159 6.749923 AAAGATCTTGGAGCTGTTATCAAC 57.250 37.500 9.17 0.00 0.00 3.18
1991 3160 4.775236 AGATCTTGGAGCTGTTATCAACC 58.225 43.478 0.00 0.00 0.00 3.77
1992 3161 3.350219 TCTTGGAGCTGTTATCAACCC 57.650 47.619 0.00 0.00 0.00 4.11
1993 3162 2.912956 TCTTGGAGCTGTTATCAACCCT 59.087 45.455 0.00 0.00 0.00 4.34
1994 3163 2.787473 TGGAGCTGTTATCAACCCTG 57.213 50.000 0.00 0.00 0.00 4.45
1995 3164 1.281867 TGGAGCTGTTATCAACCCTGG 59.718 52.381 0.00 0.00 0.00 4.45
1996 3165 1.559682 GGAGCTGTTATCAACCCTGGA 59.440 52.381 0.00 0.00 0.00 3.86
1997 3166 2.173569 GGAGCTGTTATCAACCCTGGAT 59.826 50.000 0.00 0.00 0.00 3.41
1998 3167 3.209410 GAGCTGTTATCAACCCTGGATG 58.791 50.000 0.00 0.00 0.00 3.51
1999 3168 2.846206 AGCTGTTATCAACCCTGGATGA 59.154 45.455 0.00 0.00 0.00 2.92
2000 3169 3.461085 AGCTGTTATCAACCCTGGATGAT 59.539 43.478 12.78 12.78 40.09 2.45
2001 3170 4.660303 AGCTGTTATCAACCCTGGATGATA 59.340 41.667 10.99 10.99 38.35 2.15
2002 3171 4.757149 GCTGTTATCAACCCTGGATGATAC 59.243 45.833 13.80 10.48 38.82 2.24
2003 3172 5.455326 GCTGTTATCAACCCTGGATGATACT 60.455 44.000 13.80 0.00 38.82 2.12
2004 3173 6.239600 GCTGTTATCAACCCTGGATGATACTA 60.240 42.308 13.80 7.00 38.82 1.82
2005 3174 7.527868 GCTGTTATCAACCCTGGATGATACTAT 60.528 40.741 13.80 0.00 38.82 2.12
2006 3175 8.275187 TGTTATCAACCCTGGATGATACTATT 57.725 34.615 13.80 0.00 38.82 1.73
2007 3176 9.387397 TGTTATCAACCCTGGATGATACTATTA 57.613 33.333 13.80 0.00 38.82 0.98
2027 3196 8.220559 ACTATTAACCAAGGTGCTCATCAATAT 58.779 33.333 0.00 0.00 0.00 1.28
2120 3289 8.677300 ACAATTGAACCATCATAAGTACATCAC 58.323 33.333 13.59 0.00 34.96 3.06
2121 3290 8.676401 CAATTGAACCATCATAAGTACATCACA 58.324 33.333 0.00 0.00 34.96 3.58
2160 3336 3.201290 AGACAGTGCTTTCTCACACAAG 58.799 45.455 0.00 0.00 39.30 3.16
2161 3337 2.939103 GACAGTGCTTTCTCACACAAGT 59.061 45.455 0.00 0.00 39.30 3.16
2178 3356 2.238646 CAAGTGAACCCCCAGCTACATA 59.761 50.000 0.00 0.00 0.00 2.29
2282 3460 2.983512 TCAAGGCTCTCCTGGACTC 58.016 57.895 0.00 0.00 43.40 3.36
2286 3464 0.258774 AGGCTCTCCTGGACTCTCTC 59.741 60.000 0.00 0.00 42.34 3.20
2449 3627 2.682136 TCGATCACGCCTTCCCCA 60.682 61.111 0.00 0.00 39.58 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.250154 TGTTTGCCTAGCCCATGCAC 61.250 55.000 0.00 0.00 41.13 4.57
50 51 2.024414 GCTAGCCCTAACCCAACATTG 58.976 52.381 2.29 0.00 0.00 2.82
52 53 1.596496 AGCTAGCCCTAACCCAACAT 58.404 50.000 12.13 0.00 0.00 2.71
53 54 1.004277 CAAGCTAGCCCTAACCCAACA 59.996 52.381 12.13 0.00 0.00 3.33
54 55 1.682087 CCAAGCTAGCCCTAACCCAAC 60.682 57.143 12.13 0.00 0.00 3.77
56 57 1.279025 CCCAAGCTAGCCCTAACCCA 61.279 60.000 12.13 0.00 0.00 4.51
57 58 1.532238 CCCAAGCTAGCCCTAACCC 59.468 63.158 12.13 0.00 0.00 4.11
58 59 1.152943 GCCCAAGCTAGCCCTAACC 60.153 63.158 12.13 0.00 35.50 2.85
60 61 3.331293 GGCCCAAGCTAGCCCTAA 58.669 61.111 12.13 0.00 43.76 2.69
283 292 2.772622 GATGGGGGACGGGATGGT 60.773 66.667 0.00 0.00 0.00 3.55
298 314 2.444895 GCCACGGAGGAGAGGGAT 60.445 66.667 0.00 0.00 41.22 3.85
321 337 1.619975 AGAGGAGAGAGACGGGGGA 60.620 63.158 0.00 0.00 0.00 4.81
323 339 0.033991 TTCAGAGGAGAGAGACGGGG 60.034 60.000 0.00 0.00 0.00 5.73
325 341 1.099689 GGTTCAGAGGAGAGAGACGG 58.900 60.000 0.00 0.00 0.00 4.79
327 343 1.480789 GGGGTTCAGAGGAGAGAGAC 58.519 60.000 0.00 0.00 0.00 3.36
347 364 4.096532 GGATTTTAGGCCTTGCTGTTCTAC 59.903 45.833 12.58 0.00 0.00 2.59
407 1335 1.369091 GCAGATTCACCACGCCGAAT 61.369 55.000 0.00 0.00 34.58 3.34
428 1356 4.819761 TGATCTGACTGCCGCCGC 62.820 66.667 0.00 0.00 0.00 6.53
429 1357 2.125552 TTGATCTGACTGCCGCCG 60.126 61.111 0.00 0.00 0.00 6.46
430 1358 1.817099 CCTTGATCTGACTGCCGCC 60.817 63.158 0.00 0.00 0.00 6.13
569 1527 2.292016 CGGCGTGTTCTCTCATCTATCT 59.708 50.000 0.00 0.00 0.00 1.98
580 1538 1.647084 GAAAACAGCGGCGTGTTCT 59.353 52.632 21.65 12.67 39.82 3.01
581 1539 1.721133 CGAAAACAGCGGCGTGTTC 60.721 57.895 21.65 14.45 39.82 3.18
582 1540 2.326550 CGAAAACAGCGGCGTGTT 59.673 55.556 17.76 17.76 42.62 3.32
630 1608 2.125512 GTAGGACAGCGGGCACAG 60.126 66.667 0.00 0.00 0.00 3.66
631 1609 2.603473 AGTAGGACAGCGGGCACA 60.603 61.111 0.00 0.00 0.00 4.57
632 1610 2.125512 CAGTAGGACAGCGGGCAC 60.126 66.667 0.00 0.00 0.00 5.01
633 1611 4.082523 GCAGTAGGACAGCGGGCA 62.083 66.667 0.00 0.00 0.00 5.36
634 1612 4.840005 GGCAGTAGGACAGCGGGC 62.840 72.222 0.00 0.00 30.75 6.13
635 1613 4.514577 CGGCAGTAGGACAGCGGG 62.515 72.222 0.00 0.00 30.75 6.13
636 1614 3.760035 ACGGCAGTAGGACAGCGG 61.760 66.667 0.00 0.99 37.07 5.52
637 1615 2.284798 ATCACGGCAGTAGGACAGCG 62.285 60.000 0.00 0.00 30.75 5.18
638 1616 0.807667 CATCACGGCAGTAGGACAGC 60.808 60.000 0.00 0.00 0.00 4.40
639 1617 0.179100 CCATCACGGCAGTAGGACAG 60.179 60.000 0.00 0.00 0.00 3.51
640 1618 1.897423 CCATCACGGCAGTAGGACA 59.103 57.895 0.00 0.00 0.00 4.02
641 1619 4.835927 CCATCACGGCAGTAGGAC 57.164 61.111 0.00 0.00 0.00 3.85
673 1651 9.811995 GGTATTATATATGCCACGTAAAGATGA 57.188 33.333 0.00 0.00 0.00 2.92
681 1659 7.614583 ACAGAGTAGGTATTATATATGCCACGT 59.385 37.037 0.00 0.00 0.00 4.49
737 1715 3.695830 AACCGAGTTCCTTCAATAGCA 57.304 42.857 0.00 0.00 0.00 3.49
739 1717 4.870991 GGAGAAACCGAGTTCCTTCAATAG 59.129 45.833 0.00 0.00 0.00 1.73
814 1798 3.545703 CAACAGAGTTCCTCCAACAACT 58.454 45.455 0.00 0.00 37.48 3.16
877 1867 3.120060 CCAAACATCTGGAGAAAAGAGCG 60.120 47.826 0.00 0.00 38.96 5.03
908 1898 3.754188 AGCAATGCGAGAGAAATGAAC 57.246 42.857 0.00 0.00 0.00 3.18
934 1924 1.627879 CAACACAATAATGCGTGGGC 58.372 50.000 0.00 0.00 37.45 5.36
935 1925 1.202114 AGCAACACAATAATGCGTGGG 59.798 47.619 0.00 0.00 44.60 4.61
936 1926 2.518949 GAGCAACACAATAATGCGTGG 58.481 47.619 0.00 0.00 44.60 4.94
937 1927 2.162208 AGGAGCAACACAATAATGCGTG 59.838 45.455 0.00 0.00 44.60 5.34
938 1928 2.162208 CAGGAGCAACACAATAATGCGT 59.838 45.455 0.00 0.00 44.60 5.24
939 1929 2.162208 ACAGGAGCAACACAATAATGCG 59.838 45.455 0.00 0.00 44.60 4.73
940 1930 3.855689 ACAGGAGCAACACAATAATGC 57.144 42.857 0.00 0.00 40.34 3.56
941 1931 4.201950 GCCTACAGGAGCAACACAATAATG 60.202 45.833 0.00 0.00 37.39 1.90
942 1932 3.947834 GCCTACAGGAGCAACACAATAAT 59.052 43.478 0.00 0.00 37.39 1.28
980 1986 1.810755 TGGCTACTCACAGTCAGTACG 59.189 52.381 0.00 0.00 0.00 3.67
1029 2046 4.321718 CCATCCTGCCATATCACTTACAG 58.678 47.826 0.00 0.00 0.00 2.74
1261 2280 5.319453 GAGAATGGATGGATTAATGCTCCA 58.681 41.667 21.46 21.46 46.45 3.86
1262 2281 4.704057 GGAGAATGGATGGATTAATGCTCC 59.296 45.833 8.53 12.08 0.00 4.70
1263 2282 5.415077 CAGGAGAATGGATGGATTAATGCTC 59.585 44.000 8.53 3.67 0.00 4.26
1272 2291 4.289410 TGAGAAAACAGGAGAATGGATGGA 59.711 41.667 0.00 0.00 0.00 3.41
1284 2303 4.083110 CCACAAGTAGCATGAGAAAACAGG 60.083 45.833 0.00 0.00 0.00 4.00
1286 2305 3.253188 GCCACAAGTAGCATGAGAAAACA 59.747 43.478 0.00 0.00 0.00 2.83
1294 2315 3.766151 CAATTGAGCCACAAGTAGCATG 58.234 45.455 0.00 0.00 42.02 4.06
1311 2332 1.986210 GGCCTGCCCTTCTGCAATT 60.986 57.895 0.00 0.00 41.51 2.32
1499 2524 6.930164 TGACATCCAAAATTGATTCAAACCTG 59.070 34.615 2.68 1.28 0.00 4.00
1501 2526 7.116805 GTCTGACATCCAAAATTGATTCAAACC 59.883 37.037 2.68 0.00 0.00 3.27
1579 2604 3.247648 ACAAAAGTAAGTAGTGCAGTGCG 59.752 43.478 11.20 0.00 0.00 5.34
1593 2618 8.483307 ACTCGTCTAAGTCAAAAACAAAAGTA 57.517 30.769 0.00 0.00 0.00 2.24
1594 2619 7.373778 ACTCGTCTAAGTCAAAAACAAAAGT 57.626 32.000 0.00 0.00 0.00 2.66
1608 2635 6.183359 CCGTCTCGTACATATACTCGTCTAAG 60.183 46.154 0.00 0.00 0.00 2.18
1609 2636 5.631096 CCGTCTCGTACATATACTCGTCTAA 59.369 44.000 0.00 0.00 0.00 2.10
1612 2639 3.983988 TCCGTCTCGTACATATACTCGTC 59.016 47.826 0.00 0.00 0.00 4.20
1613 2640 3.982475 TCCGTCTCGTACATATACTCGT 58.018 45.455 0.00 0.00 0.00 4.18
1614 2641 5.119743 TCAATCCGTCTCGTACATATACTCG 59.880 44.000 0.00 0.00 0.00 4.18
1619 2646 6.327279 TCAATCAATCCGTCTCGTACATAT 57.673 37.500 0.00 0.00 0.00 1.78
1627 2654 6.870965 AGCTATGTAATCAATCAATCCGTCTC 59.129 38.462 0.00 0.00 0.00 3.36
1629 2656 7.171508 TCAAGCTATGTAATCAATCAATCCGTC 59.828 37.037 0.00 0.00 0.00 4.79
1650 2677 3.386078 TGATCCTGATACTCCAGTCAAGC 59.614 47.826 0.00 0.00 32.43 4.01
1686 2713 2.005451 CTATGACACTTGAGCACCTGC 58.995 52.381 0.00 0.00 42.49 4.85
1735 2762 4.753516 TTCAACAAGTCTTCCTCACTCA 57.246 40.909 0.00 0.00 0.00 3.41
1739 2766 7.285172 TGAATTGAATTCAACAAGTCTTCCTCA 59.715 33.333 22.71 5.14 45.57 3.86
1778 2808 0.386838 AGCAAGCTTTGTGAACTGGC 59.613 50.000 0.00 0.00 0.00 4.85
1779 2809 1.677576 TCAGCAAGCTTTGTGAACTGG 59.322 47.619 0.00 0.00 0.00 4.00
1826 2864 4.881019 AGCTCTTCTAACTTGCAGAGAA 57.119 40.909 0.00 1.89 35.70 2.87
1828 2866 4.925061 CAAGCTCTTCTAACTTGCAGAG 57.075 45.455 0.00 0.00 34.90 3.35
1886 2924 3.260269 TTATGAGACGGATGGAGGGAT 57.740 47.619 0.00 0.00 0.00 3.85
1887 2925 2.767644 TTATGAGACGGATGGAGGGA 57.232 50.000 0.00 0.00 0.00 4.20
1888 2926 6.607600 TCTTATATTATGAGACGGATGGAGGG 59.392 42.308 0.00 0.00 0.00 4.30
1889 2927 7.646548 TCTTATATTATGAGACGGATGGAGG 57.353 40.000 0.00 0.00 0.00 4.30
1891 2929 6.183360 CGCTCTTATATTATGAGACGGATGGA 60.183 42.308 0.00 0.00 33.20 3.41
1892 2930 5.974158 CGCTCTTATATTATGAGACGGATGG 59.026 44.000 0.00 0.00 33.20 3.51
1894 2932 6.761099 ACGCTCTTATATTATGAGACGGAT 57.239 37.500 16.71 3.68 35.72 4.18
1895 2933 6.570672 AACGCTCTTATATTATGAGACGGA 57.429 37.500 16.71 0.00 35.72 4.69
1896 2934 7.359264 CCAAAACGCTCTTATATTATGAGACGG 60.359 40.741 16.71 7.11 35.72 4.79
1897 2935 7.381408 TCCAAAACGCTCTTATATTATGAGACG 59.619 37.037 13.57 13.57 36.53 4.18
1898 2936 8.488764 GTCCAAAACGCTCTTATATTATGAGAC 58.511 37.037 0.00 0.00 33.20 3.36
1899 2937 8.201464 TGTCCAAAACGCTCTTATATTATGAGA 58.799 33.333 0.00 0.00 33.20 3.27
1903 2941 9.477484 CTAGTGTCCAAAACGCTCTTATATTAT 57.523 33.333 0.00 0.00 45.69 1.28
1904 2942 8.472413 ACTAGTGTCCAAAACGCTCTTATATTA 58.528 33.333 0.00 0.00 45.69 0.98
1905 2943 7.328737 ACTAGTGTCCAAAACGCTCTTATATT 58.671 34.615 0.00 0.00 45.69 1.28
1906 2944 6.875076 ACTAGTGTCCAAAACGCTCTTATAT 58.125 36.000 0.00 0.00 45.69 0.86
1908 2946 5.148651 ACTAGTGTCCAAAACGCTCTTAT 57.851 39.130 0.00 0.00 45.69 1.73
1909 2947 4.595762 ACTAGTGTCCAAAACGCTCTTA 57.404 40.909 0.00 0.00 45.69 2.10
1910 2948 3.470645 ACTAGTGTCCAAAACGCTCTT 57.529 42.857 0.00 0.00 45.69 2.85
1911 2949 3.181469 TGAACTAGTGTCCAAAACGCTCT 60.181 43.478 0.00 0.00 45.69 4.09
1912 2950 3.128349 TGAACTAGTGTCCAAAACGCTC 58.872 45.455 0.00 0.00 45.69 5.03
1914 2952 3.810373 CATGAACTAGTGTCCAAAACGC 58.190 45.455 0.00 0.00 38.74 4.84
1915 2953 3.498397 AGCATGAACTAGTGTCCAAAACG 59.502 43.478 0.00 0.00 0.00 3.60
1916 2954 4.515191 TGAGCATGAACTAGTGTCCAAAAC 59.485 41.667 0.00 0.00 0.00 2.43
1918 2956 4.350368 TGAGCATGAACTAGTGTCCAAA 57.650 40.909 0.00 0.00 0.00 3.28
1919 2957 4.065088 GTTGAGCATGAACTAGTGTCCAA 58.935 43.478 0.00 0.00 0.00 3.53
1920 2958 3.070878 TGTTGAGCATGAACTAGTGTCCA 59.929 43.478 0.00 0.00 31.74 4.02
1922 2960 4.151335 CAGTGTTGAGCATGAACTAGTGTC 59.849 45.833 0.00 0.00 31.74 3.67
1923 2961 4.060900 CAGTGTTGAGCATGAACTAGTGT 58.939 43.478 0.00 0.00 31.74 3.55
1925 2963 3.070018 GCAGTGTTGAGCATGAACTAGT 58.930 45.455 0.00 0.00 31.74 2.57
1926 2964 3.069289 TGCAGTGTTGAGCATGAACTAG 58.931 45.455 0.00 0.00 31.74 2.57
1948 3117 9.896645 AGATCTTTTAGACTGCATGAATTAGAA 57.103 29.630 0.00 0.00 0.00 2.10
1950 3119 9.932699 CAAGATCTTTTAGACTGCATGAATTAG 57.067 33.333 4.86 0.00 0.00 1.73
1952 3121 7.613022 TCCAAGATCTTTTAGACTGCATGAATT 59.387 33.333 4.86 0.00 0.00 2.17
1953 3122 7.114754 TCCAAGATCTTTTAGACTGCATGAAT 58.885 34.615 4.86 0.00 0.00 2.57
1954 3123 6.475504 TCCAAGATCTTTTAGACTGCATGAA 58.524 36.000 4.86 0.00 0.00 2.57
1956 3125 5.220815 GCTCCAAGATCTTTTAGACTGCATG 60.221 44.000 4.86 0.00 0.00 4.06
1957 3126 4.880696 GCTCCAAGATCTTTTAGACTGCAT 59.119 41.667 4.86 0.00 0.00 3.96
1959 3128 4.332268 CAGCTCCAAGATCTTTTAGACTGC 59.668 45.833 4.86 4.48 0.00 4.40
1960 3129 5.486526 ACAGCTCCAAGATCTTTTAGACTG 58.513 41.667 21.38 21.38 0.00 3.51
1961 3130 5.753721 ACAGCTCCAAGATCTTTTAGACT 57.246 39.130 4.86 5.35 0.00 3.24
1963 3132 7.851228 TGATAACAGCTCCAAGATCTTTTAGA 58.149 34.615 4.86 2.44 0.00 2.10
1964 3133 8.394121 GTTGATAACAGCTCCAAGATCTTTTAG 58.606 37.037 4.86 7.31 0.00 1.85
1965 3134 7.336931 GGTTGATAACAGCTCCAAGATCTTTTA 59.663 37.037 4.86 0.61 0.00 1.52
1966 3135 6.151817 GGTTGATAACAGCTCCAAGATCTTTT 59.848 38.462 4.86 0.00 0.00 2.27
1967 3136 5.649831 GGTTGATAACAGCTCCAAGATCTTT 59.350 40.000 4.86 0.00 0.00 2.52
1968 3137 5.189180 GGTTGATAACAGCTCCAAGATCTT 58.811 41.667 0.88 0.88 0.00 2.40
1969 3138 4.384647 GGGTTGATAACAGCTCCAAGATCT 60.385 45.833 0.00 0.00 0.00 2.75
1970 3139 3.879892 GGGTTGATAACAGCTCCAAGATC 59.120 47.826 0.00 0.00 0.00 2.75
1971 3140 3.525199 AGGGTTGATAACAGCTCCAAGAT 59.475 43.478 0.00 0.00 0.00 2.40
1972 3141 2.912956 AGGGTTGATAACAGCTCCAAGA 59.087 45.455 0.00 0.00 0.00 3.02
1973 3142 3.012518 CAGGGTTGATAACAGCTCCAAG 58.987 50.000 0.00 0.00 0.00 3.61
1974 3143 2.290896 CCAGGGTTGATAACAGCTCCAA 60.291 50.000 0.00 0.00 0.00 3.53
1975 3144 1.281867 CCAGGGTTGATAACAGCTCCA 59.718 52.381 0.00 0.00 0.00 3.86
1976 3145 1.559682 TCCAGGGTTGATAACAGCTCC 59.440 52.381 0.00 0.00 0.00 4.70
1977 3146 3.118261 TCATCCAGGGTTGATAACAGCTC 60.118 47.826 0.00 0.00 0.00 4.09
1978 3147 2.846206 TCATCCAGGGTTGATAACAGCT 59.154 45.455 0.00 0.00 0.00 4.24
1979 3148 3.281727 TCATCCAGGGTTGATAACAGC 57.718 47.619 0.00 0.00 0.00 4.40
1980 3149 6.179906 AGTATCATCCAGGGTTGATAACAG 57.820 41.667 16.74 0.00 38.06 3.16
1981 3150 7.872061 ATAGTATCATCCAGGGTTGATAACA 57.128 36.000 16.74 10.32 38.06 2.41
1984 3153 8.822805 GGTTAATAGTATCATCCAGGGTTGATA 58.177 37.037 12.82 12.82 36.38 2.15
1985 3154 7.294720 TGGTTAATAGTATCATCCAGGGTTGAT 59.705 37.037 14.48 14.48 37.96 2.57
1986 3155 6.617784 TGGTTAATAGTATCATCCAGGGTTGA 59.382 38.462 1.79 1.79 0.00 3.18
1987 3156 6.837312 TGGTTAATAGTATCATCCAGGGTTG 58.163 40.000 0.00 0.00 0.00 3.77
1988 3157 7.421382 CCTTGGTTAATAGTATCATCCAGGGTT 60.421 40.741 14.68 0.00 36.45 4.11
1989 3158 6.044404 CCTTGGTTAATAGTATCATCCAGGGT 59.956 42.308 14.68 0.00 36.45 4.34
1990 3159 6.044404 ACCTTGGTTAATAGTATCATCCAGGG 59.956 42.308 18.31 18.31 43.31 4.45
1991 3160 6.936900 CACCTTGGTTAATAGTATCATCCAGG 59.063 42.308 0.00 0.00 0.00 4.45
1992 3161 6.428159 GCACCTTGGTTAATAGTATCATCCAG 59.572 42.308 0.00 0.00 0.00 3.86
1993 3162 6.101150 AGCACCTTGGTTAATAGTATCATCCA 59.899 38.462 0.00 0.00 0.00 3.41
1994 3163 6.534634 AGCACCTTGGTTAATAGTATCATCC 58.465 40.000 0.00 0.00 0.00 3.51
1995 3164 7.217200 TGAGCACCTTGGTTAATAGTATCATC 58.783 38.462 0.00 0.00 0.00 2.92
1996 3165 7.136822 TGAGCACCTTGGTTAATAGTATCAT 57.863 36.000 0.00 0.00 0.00 2.45
1997 3166 6.553953 TGAGCACCTTGGTTAATAGTATCA 57.446 37.500 0.00 0.00 0.00 2.15
1998 3167 7.217200 TGATGAGCACCTTGGTTAATAGTATC 58.783 38.462 0.00 0.00 0.00 2.24
1999 3168 7.136822 TGATGAGCACCTTGGTTAATAGTAT 57.863 36.000 0.00 0.00 0.00 2.12
2000 3169 6.553953 TGATGAGCACCTTGGTTAATAGTA 57.446 37.500 0.00 0.00 0.00 1.82
2001 3170 5.435686 TGATGAGCACCTTGGTTAATAGT 57.564 39.130 0.00 0.00 0.00 2.12
2002 3171 6.949352 ATTGATGAGCACCTTGGTTAATAG 57.051 37.500 0.00 0.00 0.00 1.73
2004 3173 8.995027 TTATATTGATGAGCACCTTGGTTAAT 57.005 30.769 0.00 0.00 0.00 1.40
2005 3174 8.995027 ATTATATTGATGAGCACCTTGGTTAA 57.005 30.769 0.00 0.00 0.00 2.01
2006 3175 8.439971 AGATTATATTGATGAGCACCTTGGTTA 58.560 33.333 0.00 0.00 0.00 2.85
2007 3176 7.293073 AGATTATATTGATGAGCACCTTGGTT 58.707 34.615 0.00 0.00 0.00 3.67
2008 3177 6.845908 AGATTATATTGATGAGCACCTTGGT 58.154 36.000 0.00 0.00 0.00 3.67
2052 3221 8.270080 TGTTCTGTGTTGTGTTTTAAGATGTA 57.730 30.769 0.00 0.00 0.00 2.29
2117 3286 6.868864 GTCTTGTATCTTCTTGCTAGTTGTGA 59.131 38.462 0.00 0.00 0.00 3.58
2120 3289 6.870965 ACTGTCTTGTATCTTCTTGCTAGTTG 59.129 38.462 0.00 0.00 0.00 3.16
2121 3290 6.870965 CACTGTCTTGTATCTTCTTGCTAGTT 59.129 38.462 0.00 0.00 0.00 2.24
2160 3336 1.557832 TGTATGTAGCTGGGGGTTCAC 59.442 52.381 0.00 0.00 0.00 3.18
2161 3337 1.557832 GTGTATGTAGCTGGGGGTTCA 59.442 52.381 0.00 0.00 0.00 3.18
2164 3340 1.008449 AGAGTGTATGTAGCTGGGGGT 59.992 52.381 0.00 0.00 0.00 4.95
2165 3341 1.414181 CAGAGTGTATGTAGCTGGGGG 59.586 57.143 0.00 0.00 0.00 5.40
2178 3356 2.301296 AGCTACAACTGATGCAGAGTGT 59.699 45.455 0.82 7.42 37.20 3.55
2222 3400 6.883744 ACCCTTTCTATGATGAGAAGAAGAC 58.116 40.000 0.00 0.00 36.80 3.01
2282 3460 0.984961 TCAGATGCCAAGGGGGAGAG 60.985 60.000 0.00 0.00 38.23 3.20
2286 3464 0.106819 CTTCTCAGATGCCAAGGGGG 60.107 60.000 0.00 0.00 40.85 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.