Multiple sequence alignment - TraesCS5B01G359900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G359900 chr5B 100.000 7160 0 0 1 7160 539476036 539468877 0.000000e+00 13223.0
1 TraesCS5B01G359900 chr5B 96.154 78 3 0 763 840 349381229 349381306 2.100000e-25 128.0
2 TraesCS5B01G359900 chr5D 94.929 1755 76 10 872 2624 443266095 443264352 0.000000e+00 2736.0
3 TraesCS5B01G359900 chr5D 90.712 1432 102 15 3132 4545 443263425 443262007 0.000000e+00 1879.0
4 TraesCS5B01G359900 chr5D 92.551 1074 44 9 4561 5600 443262166 443261095 0.000000e+00 1507.0
5 TraesCS5B01G359900 chr5D 90.848 743 58 8 1 736 410710307 410709568 0.000000e+00 987.0
6 TraesCS5B01G359900 chr5D 90.431 742 63 7 1 736 479778686 479777947 0.000000e+00 970.0
7 TraesCS5B01G359900 chr5D 87.440 836 45 19 6359 7160 443260281 443259472 0.000000e+00 907.0
8 TraesCS5B01G359900 chr5D 90.476 630 34 9 5599 6225 443261039 443260433 0.000000e+00 808.0
9 TraesCS5B01G359900 chr5D 93.682 459 26 3 2660 3117 443264352 443263896 0.000000e+00 684.0
10 TraesCS5B01G359900 chr5D 97.436 78 2 0 763 840 272373015 272372938 4.510000e-27 134.0
11 TraesCS5B01G359900 chr5D 90.541 74 2 1 3092 3160 327984132 327984205 7.650000e-15 93.5
12 TraesCS5B01G359900 chr5A 93.172 1406 71 12 3157 4549 559519979 559518586 0.000000e+00 2041.0
13 TraesCS5B01G359900 chr5A 93.523 1266 57 14 931 2180 559522173 559520917 0.000000e+00 1860.0
14 TraesCS5B01G359900 chr5A 90.622 917 47 15 2183 3096 559520852 559519972 0.000000e+00 1181.0
15 TraesCS5B01G359900 chr5A 88.076 889 53 17 4741 5604 559518325 559517465 0.000000e+00 1005.0
16 TraesCS5B01G359900 chr5A 87.584 741 38 20 6451 7160 559516425 559515708 0.000000e+00 809.0
17 TraesCS5B01G359900 chr5A 90.796 565 37 8 5599 6160 559517437 559516885 0.000000e+00 741.0
18 TraesCS5B01G359900 chr5A 94.203 69 4 0 3092 3160 406535064 406534996 9.820000e-19 106.0
19 TraesCS5B01G359900 chr4D 90.848 743 59 7 1 736 438909213 438908473 0.000000e+00 987.0
20 TraesCS5B01G359900 chr4D 90.483 746 59 10 1 736 437807521 437808264 0.000000e+00 974.0
21 TraesCS5B01G359900 chr4D 83.333 162 24 3 1221 1382 474016736 474016578 5.790000e-31 147.0
22 TraesCS5B01G359900 chr3D 90.860 744 57 8 1 736 267177613 267176873 0.000000e+00 987.0
23 TraesCS5B01G359900 chr2D 90.823 741 59 8 1 734 209547997 209547259 0.000000e+00 983.0
24 TraesCS5B01G359900 chr2D 90.663 739 59 7 6 736 162643041 162642305 0.000000e+00 974.0
25 TraesCS5B01G359900 chr2D 93.548 62 4 0 3093 3154 48025337 48025398 7.650000e-15 93.5
26 TraesCS5B01G359900 chr1D 90.726 744 58 9 1 735 346520103 346519362 0.000000e+00 981.0
27 TraesCS5B01G359900 chr1D 91.954 87 7 0 1284 1370 470924280 470924366 9.750000e-24 122.0
28 TraesCS5B01G359900 chr6A 90.591 744 58 9 1 736 10911915 10911176 0.000000e+00 976.0
29 TraesCS5B01G359900 chr6A 88.732 71 5 1 3090 3160 23754901 23754834 4.600000e-12 84.2
30 TraesCS5B01G359900 chr1B 89.270 233 25 0 2342 2574 562074437 562074669 7.030000e-75 292.0
31 TraesCS5B01G359900 chr1B 96.154 78 3 0 763 840 112839602 112839679 2.100000e-25 128.0
32 TraesCS5B01G359900 chr1B 85.714 70 8 2 3092 3160 297727225 297727293 9.960000e-09 73.1
33 TraesCS5B01G359900 chr1B 86.111 72 5 3 3091 3160 626101585 626101517 9.960000e-09 73.1
34 TraesCS5B01G359900 chr4B 83.333 162 24 3 1221 1382 597036491 597036333 5.790000e-31 147.0
35 TraesCS5B01G359900 chr4A 82.716 162 25 3 1221 1382 680590102 680589944 2.690000e-29 141.0
36 TraesCS5B01G359900 chr4A 94.737 57 3 0 3094 3150 654981150 654981094 9.890000e-14 89.8
37 TraesCS5B01G359900 chr3B 96.154 78 3 0 763 840 194141479 194141402 2.100000e-25 128.0
38 TraesCS5B01G359900 chr3A 96.154 78 3 0 761 838 624925541 624925464 2.100000e-25 128.0
39 TraesCS5B01G359900 chr2B 96.154 78 3 0 763 840 175325551 175325628 2.100000e-25 128.0
40 TraesCS5B01G359900 chr2B 96.154 78 3 0 763 840 424553316 424553239 2.100000e-25 128.0
41 TraesCS5B01G359900 chr2B 96.154 78 3 0 763 840 528093146 528093223 2.100000e-25 128.0
42 TraesCS5B01G359900 chr2B 96.154 78 3 0 763 840 557335490 557335567 2.100000e-25 128.0
43 TraesCS5B01G359900 chr6D 89.744 78 5 1 3087 3161 57176677 57176754 5.910000e-16 97.1
44 TraesCS5B01G359900 chr7D 93.443 61 4 0 3097 3157 184537391 184537451 2.750000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G359900 chr5B 539468877 539476036 7159 True 13223.000000 13223 100.000000 1 7160 1 chr5B.!!$R1 7159
1 TraesCS5B01G359900 chr5D 443259472 443266095 6623 True 1420.166667 2736 91.631667 872 7160 6 chr5D.!!$R4 6288
2 TraesCS5B01G359900 chr5D 410709568 410710307 739 True 987.000000 987 90.848000 1 736 1 chr5D.!!$R2 735
3 TraesCS5B01G359900 chr5D 479777947 479778686 739 True 970.000000 970 90.431000 1 736 1 chr5D.!!$R3 735
4 TraesCS5B01G359900 chr5A 559515708 559522173 6465 True 1272.833333 2041 90.628833 931 7160 6 chr5A.!!$R2 6229
5 TraesCS5B01G359900 chr4D 438908473 438909213 740 True 987.000000 987 90.848000 1 736 1 chr4D.!!$R1 735
6 TraesCS5B01G359900 chr4D 437807521 437808264 743 False 974.000000 974 90.483000 1 736 1 chr4D.!!$F1 735
7 TraesCS5B01G359900 chr3D 267176873 267177613 740 True 987.000000 987 90.860000 1 736 1 chr3D.!!$R1 735
8 TraesCS5B01G359900 chr2D 209547259 209547997 738 True 983.000000 983 90.823000 1 734 1 chr2D.!!$R2 733
9 TraesCS5B01G359900 chr2D 162642305 162643041 736 True 974.000000 974 90.663000 6 736 1 chr2D.!!$R1 730
10 TraesCS5B01G359900 chr1D 346519362 346520103 741 True 981.000000 981 90.726000 1 735 1 chr1D.!!$R1 734
11 TraesCS5B01G359900 chr6A 10911176 10911915 739 True 976.000000 976 90.591000 1 736 1 chr6A.!!$R1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 792 0.034756 TGTGTATGCGAGTGTGGCTT 59.965 50.0 0.00 0.0 0.00 4.35 F
779 800 0.037326 CGAGTGTGGCTTGCCTAAGA 60.037 55.0 13.18 0.0 35.92 2.10 F
1486 1508 0.470341 TCGTGTGGGTCAAATGGTGA 59.530 50.0 0.00 0.0 0.00 4.02 F
2630 2729 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
3626 4192 0.324091 AGGCTGCAAAAGATGGGGAG 60.324 55.0 0.50 0.0 0.00 4.30 F
4791 5606 0.944386 TGTTCTTGAAGCGGACTTGC 59.056 50.0 0.00 0.0 35.82 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 2729 0.179166 CCAACTGCACACACACACAC 60.179 55.0 0.0 0.0 0.0 3.82 R
2633 2732 0.525311 CAACCAACTGCACACACACA 59.475 50.0 0.0 0.0 0.0 3.72 R
2634 2733 0.525761 ACAACCAACTGCACACACAC 59.474 50.0 0.0 0.0 0.0 3.82 R
4235 4802 0.109342 CCACAGAGAGCCACCACTTT 59.891 55.0 0.0 0.0 0.0 2.66 R
5140 5994 0.238289 CCGTTGCTGGCTGTAAACTG 59.762 55.0 0.0 0.0 0.0 3.16 R
6398 7433 0.179001 AACCGTTGCTACCTGGCTTT 60.179 50.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.308323 ACGTCTCCGTCGTATCTACTTTC 59.692 47.826 0.00 0.00 46.28 2.62
36 37 6.312180 CGTATCTACTTTCCCTAACGCTTTTT 59.688 38.462 0.00 0.00 0.00 1.94
115 116 3.754965 TGTTTTCAGCAGAGCTACCATT 58.245 40.909 0.00 0.00 36.40 3.16
118 119 3.423539 TTCAGCAGAGCTACCATTGTT 57.576 42.857 0.00 0.00 36.40 2.83
119 120 2.703416 TCAGCAGAGCTACCATTGTTG 58.297 47.619 0.00 0.00 36.40 3.33
143 150 8.770438 TGTTTTGTGCAGAAATAAAAGTTCTT 57.230 26.923 10.13 0.00 32.96 2.52
162 169 8.897872 AGTTCTTAGATTGGAACGAAACTTTA 57.102 30.769 0.00 0.00 44.33 1.85
382 401 1.084370 CGTTTCACGAGATGGAGCCC 61.084 60.000 0.00 0.00 46.05 5.19
425 444 1.146982 GGGAGGCCAGATCTAGAGTCT 59.853 57.143 5.01 0.00 0.00 3.24
456 475 2.432119 GGAGAGGGGGATCTTCGAC 58.568 63.158 0.00 0.00 0.00 4.20
480 499 1.276421 CGTCATCACCAACCCTTCTCT 59.724 52.381 0.00 0.00 0.00 3.10
485 504 2.816411 TCACCAACCCTTCTCTATCGT 58.184 47.619 0.00 0.00 0.00 3.73
644 665 7.995289 TGAGATTGTTGTTGTTATGACTTTGT 58.005 30.769 0.00 0.00 0.00 2.83
663 684 5.648178 TTGTCATGCTTAATGCTTGTCAT 57.352 34.783 10.60 0.00 44.28 3.06
668 689 5.349270 TCATGCTTAATGCTTGTCATTTTGC 59.651 36.000 10.40 2.60 42.48 3.68
673 694 1.006337 GCTTGTCATTTTGCGCCCA 60.006 52.632 4.18 0.00 0.00 5.36
756 777 4.471904 CATAGTGTGGACCATAGTGTGT 57.528 45.455 12.83 0.00 0.00 3.72
757 778 5.592104 CATAGTGTGGACCATAGTGTGTA 57.408 43.478 12.83 0.00 0.00 2.90
758 779 6.161855 CATAGTGTGGACCATAGTGTGTAT 57.838 41.667 12.83 0.00 0.00 2.29
759 780 4.471904 AGTGTGGACCATAGTGTGTATG 57.528 45.455 0.00 0.00 0.00 2.39
760 781 2.936498 GTGTGGACCATAGTGTGTATGC 59.064 50.000 0.00 0.00 0.00 3.14
761 782 2.201732 GTGGACCATAGTGTGTATGCG 58.798 52.381 0.00 0.00 0.00 4.73
762 783 2.104170 TGGACCATAGTGTGTATGCGA 58.896 47.619 0.00 0.00 0.00 5.10
763 784 2.100749 TGGACCATAGTGTGTATGCGAG 59.899 50.000 0.00 0.00 0.00 5.03
764 785 2.100916 GGACCATAGTGTGTATGCGAGT 59.899 50.000 0.00 0.00 0.00 4.18
765 786 3.116300 GACCATAGTGTGTATGCGAGTG 58.884 50.000 0.00 0.00 0.00 3.51
766 787 2.496070 ACCATAGTGTGTATGCGAGTGT 59.504 45.455 0.00 0.00 0.00 3.55
767 788 2.860136 CCATAGTGTGTATGCGAGTGTG 59.140 50.000 0.00 0.00 0.00 3.82
768 789 2.647529 TAGTGTGTATGCGAGTGTGG 57.352 50.000 0.00 0.00 0.00 4.17
769 790 0.670546 AGTGTGTATGCGAGTGTGGC 60.671 55.000 0.00 0.00 0.00 5.01
770 791 0.670546 GTGTGTATGCGAGTGTGGCT 60.671 55.000 0.00 0.00 0.00 4.75
771 792 0.034756 TGTGTATGCGAGTGTGGCTT 59.965 50.000 0.00 0.00 0.00 4.35
772 793 0.443869 GTGTATGCGAGTGTGGCTTG 59.556 55.000 0.00 0.00 0.00 4.01
776 797 2.047274 GCGAGTGTGGCTTGCCTA 60.047 61.111 13.18 0.00 46.53 3.93
777 798 1.671054 GCGAGTGTGGCTTGCCTAA 60.671 57.895 13.18 0.00 46.53 2.69
778 799 1.639298 GCGAGTGTGGCTTGCCTAAG 61.639 60.000 13.18 0.00 46.53 2.18
779 800 0.037326 CGAGTGTGGCTTGCCTAAGA 60.037 55.000 13.18 0.00 35.92 2.10
780 801 1.406069 CGAGTGTGGCTTGCCTAAGAT 60.406 52.381 13.18 0.00 35.92 2.40
781 802 2.012673 GAGTGTGGCTTGCCTAAGATG 58.987 52.381 13.18 0.00 35.92 2.90
782 803 1.352352 AGTGTGGCTTGCCTAAGATGT 59.648 47.619 13.18 0.00 35.92 3.06
783 804 1.470098 GTGTGGCTTGCCTAAGATGTG 59.530 52.381 13.18 0.00 35.92 3.21
784 805 1.098050 GTGGCTTGCCTAAGATGTGG 58.902 55.000 13.18 0.00 35.92 4.17
792 813 2.436417 GCCTAAGATGTGGCTTGAACA 58.564 47.619 0.00 0.00 45.26 3.18
793 814 2.819608 GCCTAAGATGTGGCTTGAACAA 59.180 45.455 0.00 0.00 45.26 2.83
794 815 3.255642 GCCTAAGATGTGGCTTGAACAAA 59.744 43.478 0.00 0.00 45.26 2.83
795 816 4.261994 GCCTAAGATGTGGCTTGAACAAAA 60.262 41.667 0.00 0.00 45.26 2.44
796 817 5.222631 CCTAAGATGTGGCTTGAACAAAAC 58.777 41.667 0.00 0.00 0.00 2.43
797 818 4.734398 AAGATGTGGCTTGAACAAAACA 57.266 36.364 0.00 0.00 0.00 2.83
798 819 4.045636 AGATGTGGCTTGAACAAAACAC 57.954 40.909 11.57 11.57 0.00 3.32
799 820 3.446873 AGATGTGGCTTGAACAAAACACA 59.553 39.130 18.67 18.67 39.56 3.72
800 821 2.953020 TGTGGCTTGAACAAAACACAC 58.047 42.857 15.01 9.85 34.36 3.82
801 822 2.297315 TGTGGCTTGAACAAAACACACA 59.703 40.909 15.01 11.56 34.36 3.72
802 823 2.666022 GTGGCTTGAACAAAACACACAC 59.334 45.455 12.81 0.00 31.45 3.82
803 824 2.267426 GGCTTGAACAAAACACACACC 58.733 47.619 0.00 0.00 0.00 4.16
804 825 2.094234 GGCTTGAACAAAACACACACCT 60.094 45.455 0.00 0.00 0.00 4.00
805 826 3.129638 GGCTTGAACAAAACACACACCTA 59.870 43.478 0.00 0.00 0.00 3.08
806 827 4.381079 GGCTTGAACAAAACACACACCTAA 60.381 41.667 0.00 0.00 0.00 2.69
807 828 5.164954 GCTTGAACAAAACACACACCTAAA 58.835 37.500 0.00 0.00 0.00 1.85
808 829 5.810074 GCTTGAACAAAACACACACCTAAAT 59.190 36.000 0.00 0.00 0.00 1.40
809 830 6.312672 GCTTGAACAAAACACACACCTAAATT 59.687 34.615 0.00 0.00 0.00 1.82
810 831 7.588143 TTGAACAAAACACACACCTAAATTG 57.412 32.000 0.00 0.00 0.00 2.32
811 832 6.102663 TGAACAAAACACACACCTAAATTGG 58.897 36.000 0.00 0.00 0.00 3.16
812 833 5.669164 ACAAAACACACACCTAAATTGGT 57.331 34.783 0.00 0.00 41.77 3.67
813 834 5.656480 ACAAAACACACACCTAAATTGGTC 58.344 37.500 0.00 0.00 38.45 4.02
814 835 5.186021 ACAAAACACACACCTAAATTGGTCA 59.814 36.000 0.00 0.00 38.45 4.02
815 836 5.923733 AAACACACACCTAAATTGGTCAA 57.076 34.783 0.00 0.00 38.45 3.18
816 837 5.923733 AACACACACCTAAATTGGTCAAA 57.076 34.783 0.00 0.00 38.45 2.69
817 838 5.257082 ACACACACCTAAATTGGTCAAAC 57.743 39.130 0.00 0.00 38.45 2.93
818 839 4.953579 ACACACACCTAAATTGGTCAAACT 59.046 37.500 0.00 0.00 38.45 2.66
819 840 5.420739 ACACACACCTAAATTGGTCAAACTT 59.579 36.000 0.00 0.00 38.45 2.66
820 841 5.748152 CACACACCTAAATTGGTCAAACTTG 59.252 40.000 0.00 0.00 38.45 3.16
821 842 4.744631 CACACCTAAATTGGTCAAACTTGC 59.255 41.667 0.00 0.00 38.45 4.01
822 843 4.202212 ACACCTAAATTGGTCAAACTTGCC 60.202 41.667 0.00 0.00 38.45 4.52
823 844 4.039124 CACCTAAATTGGTCAAACTTGCCT 59.961 41.667 0.00 0.00 38.45 4.75
824 845 5.242838 CACCTAAATTGGTCAAACTTGCCTA 59.757 40.000 0.00 0.00 38.45 3.93
825 846 5.836358 ACCTAAATTGGTCAAACTTGCCTAA 59.164 36.000 5.07 0.00 34.86 2.69
826 847 6.156519 CCTAAATTGGTCAAACTTGCCTAAC 58.843 40.000 5.07 0.00 0.00 2.34
827 848 4.600692 AATTGGTCAAACTTGCCTAACC 57.399 40.909 5.07 0.00 0.00 2.85
828 849 3.306472 TTGGTCAAACTTGCCTAACCT 57.694 42.857 0.00 0.00 0.00 3.50
829 850 3.306472 TGGTCAAACTTGCCTAACCTT 57.694 42.857 0.00 0.00 0.00 3.50
830 851 4.440826 TGGTCAAACTTGCCTAACCTTA 57.559 40.909 0.00 0.00 0.00 2.69
831 852 4.794334 TGGTCAAACTTGCCTAACCTTAA 58.206 39.130 0.00 0.00 0.00 1.85
832 853 5.202004 TGGTCAAACTTGCCTAACCTTAAA 58.798 37.500 0.00 0.00 0.00 1.52
833 854 5.836358 TGGTCAAACTTGCCTAACCTTAAAT 59.164 36.000 0.00 0.00 0.00 1.40
834 855 6.156519 GGTCAAACTTGCCTAACCTTAAATG 58.843 40.000 0.00 0.00 0.00 2.32
835 856 6.239204 GGTCAAACTTGCCTAACCTTAAATGT 60.239 38.462 0.00 0.00 0.00 2.71
836 857 6.640907 GTCAAACTTGCCTAACCTTAAATGTG 59.359 38.462 0.00 0.00 0.00 3.21
837 858 5.722021 AACTTGCCTAACCTTAAATGTGG 57.278 39.130 0.00 0.00 0.00 4.17
838 859 3.509967 ACTTGCCTAACCTTAAATGTGGC 59.490 43.478 0.00 0.00 39.33 5.01
839 860 3.162147 TGCCTAACCTTAAATGTGGCA 57.838 42.857 0.00 0.00 45.31 4.92
840 861 3.707316 TGCCTAACCTTAAATGTGGCAT 58.293 40.909 0.00 0.00 43.09 4.40
841 862 3.446873 TGCCTAACCTTAAATGTGGCATG 59.553 43.478 0.00 0.00 43.09 4.06
842 863 3.181476 GCCTAACCTTAAATGTGGCATGG 60.181 47.826 0.00 0.00 38.79 3.66
843 864 4.277476 CCTAACCTTAAATGTGGCATGGA 58.723 43.478 0.00 0.00 0.00 3.41
844 865 4.895297 CCTAACCTTAAATGTGGCATGGAT 59.105 41.667 0.00 0.00 0.00 3.41
845 866 4.741321 AACCTTAAATGTGGCATGGATG 57.259 40.909 0.00 0.00 0.00 3.51
855 876 3.646976 CATGGATGCAGCGGCGAG 61.647 66.667 12.98 2.55 45.35 5.03
892 913 2.765689 TGGACCAAACCCAAACTGAT 57.234 45.000 0.00 0.00 0.00 2.90
893 914 2.593026 TGGACCAAACCCAAACTGATC 58.407 47.619 0.00 0.00 0.00 2.92
914 936 4.284123 TGCGGAGAGATGTTGCAC 57.716 55.556 0.00 0.00 0.00 4.57
934 956 5.428457 TGCACTAATCCAGAAATCTTAGGGA 59.572 40.000 0.00 0.00 28.08 4.20
940 962 5.255397 TCCAGAAATCTTAGGGAGCAAAA 57.745 39.130 0.00 0.00 0.00 2.44
942 964 4.766891 CCAGAAATCTTAGGGAGCAAAACA 59.233 41.667 0.00 0.00 0.00 2.83
970 992 5.416271 TTCAGAAAAACGCTATCCTACCT 57.584 39.130 0.00 0.00 0.00 3.08
973 995 5.044558 CAGAAAAACGCTATCCTACCTCTC 58.955 45.833 0.00 0.00 0.00 3.20
1071 1093 2.757508 CCGCTGCTCCTCTCCTCA 60.758 66.667 0.00 0.00 0.00 3.86
1074 1096 1.516892 GCTGCTCCTCTCCTCACAG 59.483 63.158 0.00 0.00 0.00 3.66
1084 1106 2.681778 CCTCACAGTCCCGAGCCT 60.682 66.667 0.00 0.00 0.00 4.58
1110 1132 2.128507 CCACGGAGAGTCCCTAGCC 61.129 68.421 0.00 0.00 31.13 3.93
1417 1439 2.705826 CTCGGCGCTGCTGATTTC 59.294 61.111 12.58 0.00 43.40 2.17
1486 1508 0.470341 TCGTGTGGGTCAAATGGTGA 59.530 50.000 0.00 0.00 0.00 4.02
1596 1618 1.076024 TGGAGAGGCCAGAAGCAATTT 59.924 47.619 5.01 0.00 46.50 1.82
1717 1739 9.627395 CTATAATGGTCCAGTTATTCGACTAAG 57.373 37.037 0.00 0.00 0.00 2.18
1840 1868 5.751990 GTCCTCTCTTGTTTTCGTCAAGTAA 59.248 40.000 5.74 0.00 41.78 2.24
1841 1869 6.424207 GTCCTCTCTTGTTTTCGTCAAGTAAT 59.576 38.462 5.74 0.00 41.78 1.89
1842 1870 6.990349 TCCTCTCTTGTTTTCGTCAAGTAATT 59.010 34.615 5.74 0.00 41.78 1.40
2000 2028 4.916983 TGACAAGGTGATTTTCAGGTTG 57.083 40.909 0.00 0.00 0.00 3.77
2181 2279 4.751767 ACTGAAATAGAGAAGGCAGAGG 57.248 45.455 0.00 0.00 0.00 3.69
2211 2310 6.572167 TTTGATGCTCATGTAATGTGAACA 57.428 33.333 0.00 0.00 46.80 3.18
2591 2690 1.521423 GTCGTACTGTCTTGTGTGCAC 59.479 52.381 10.75 10.75 0.00 4.57
2598 2697 4.261801 ACTGTCTTGTGTGCACTACTTTT 58.738 39.130 19.41 0.00 0.00 2.27
2601 2700 6.114221 TGTCTTGTGTGCACTACTTTTTAC 57.886 37.500 19.41 5.55 0.00 2.01
2606 2705 8.717821 TCTTGTGTGCACTACTTTTTACATATC 58.282 33.333 19.41 0.00 0.00 1.63
2608 2707 8.028540 TGTGTGCACTACTTTTTACATATCTG 57.971 34.615 19.41 0.00 0.00 2.90
2609 2708 7.659799 TGTGTGCACTACTTTTTACATATCTGT 59.340 33.333 19.41 0.00 39.49 3.41
2610 2709 9.146984 GTGTGCACTACTTTTTACATATCTGTA 57.853 33.333 19.41 0.00 36.79 2.74
2628 2727 2.675348 TGTATGTGTGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
2629 2728 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2630 2729 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2631 2730 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2632 2731 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2633 2732 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2634 2733 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2635 2734 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2636 2735 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2637 2736 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2638 2737 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2639 2738 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2640 2739 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2643 2742 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
2654 2753 1.067915 GTGTGTGTGCAGTTGGTTGTT 60.068 47.619 0.00 0.00 0.00 2.83
2659 2758 3.445450 TGTGTGCAGTTGGTTGTTGTTAT 59.555 39.130 0.00 0.00 0.00 1.89
2699 2798 1.918595 GCTTTCTGCAATAGCCTTGC 58.081 50.000 13.26 13.26 45.11 4.01
2746 2845 4.542735 GTTGAAATACCCTTGTTTGGACG 58.457 43.478 0.00 0.00 0.00 4.79
2765 2864 4.216687 GGACGTACTCTTATCCATCCAGAG 59.783 50.000 0.00 0.00 40.08 3.35
2822 2921 1.622811 GGGGTTGGTCAATGCATTTGA 59.377 47.619 9.83 8.25 42.09 2.69
2884 2983 6.817765 TCTTGTACAAAGGACATCCATTTC 57.182 37.500 10.03 0.00 38.89 2.17
2922 3021 2.603075 TGGCAACCTAGGAATTTGCT 57.397 45.000 26.11 0.00 44.18 3.91
3047 3148 9.533253 TGGATGTGATATAATTCTGTATATGCG 57.467 33.333 0.00 0.00 28.73 4.73
3100 3201 7.494952 GTGTTATTGATGTTTAGTACTCCCTCC 59.505 40.741 0.00 0.00 0.00 4.30
3117 3218 3.244112 CCCTCCGTCCCACAATATAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3119 3220 3.025978 TCCGTCCCACAATATAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3120 3221 3.448301 TCCGTCCCACAATATAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3121 3222 4.081531 TCCGTCCCACAATATAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3122 3223 4.632688 CCGTCCCACAATATAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3123 3224 5.122711 CCGTCCCACAATATAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3124 3225 6.019152 CGTCCCACAATATAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
3126 3227 5.473846 TCCCACAATATAAGACGTTTTTGCA 59.526 36.000 0.00 0.00 0.00 4.08
3129 3230 6.183359 CCACAATATAAGACGTTTTTGCAAGC 60.183 38.462 0.00 0.00 0.00 4.01
3130 3231 6.582295 CACAATATAAGACGTTTTTGCAAGCT 59.418 34.615 0.00 0.00 0.00 3.74
3139 3696 3.898361 CGTTTTTGCAAGCTACGTCTTAC 59.102 43.478 16.87 0.00 0.00 2.34
3161 3718 1.866015 TGTGGGACAGAGGGAGTATG 58.134 55.000 0.00 0.00 41.80 2.39
3172 3729 6.491383 ACAGAGGGAGTATGTCTTACTGTTA 58.509 40.000 3.25 0.00 41.35 2.41
3295 3861 8.154203 TCTTTTCTTTTGGTTTGACTTCCTTTT 58.846 29.630 0.00 0.00 0.00 2.27
3296 3862 8.684386 TTTTCTTTTGGTTTGACTTCCTTTTT 57.316 26.923 0.00 0.00 0.00 1.94
3481 4047 2.549064 AAAACCCAGCTGATTTTGCC 57.451 45.000 17.39 0.00 0.00 4.52
3501 4067 3.577415 GCCCTATGGAAGGTAATAGACGT 59.423 47.826 0.00 0.00 44.90 4.34
3510 4076 4.684484 AGGTAATAGACGTCCCATTTCC 57.316 45.455 19.94 19.94 0.00 3.13
3518 4084 1.076350 ACGTCCCATTTCCCCATTTCA 59.924 47.619 0.00 0.00 0.00 2.69
3520 4086 2.166254 CGTCCCATTTCCCCATTTCAAG 59.834 50.000 0.00 0.00 0.00 3.02
3535 4101 7.201821 CCCCATTTCAAGTATGTAGATTGTTCC 60.202 40.741 0.00 0.00 0.00 3.62
3555 4121 1.000827 CGTGTCTGCTCTGTGAAGAGT 60.001 52.381 4.77 0.00 38.16 3.24
3580 4146 9.937175 GTTGATTTAGATATTTACTTCAGCACC 57.063 33.333 0.00 0.00 0.00 5.01
3594 4160 5.594317 ACTTCAGCACCAAGTTAGTTGATTT 59.406 36.000 0.72 0.00 38.60 2.17
3626 4192 0.324091 AGGCTGCAAAAGATGGGGAG 60.324 55.000 0.50 0.00 0.00 4.30
3780 4346 5.717078 TGAGAATGAAATTGCTCAAAGCT 57.283 34.783 0.11 0.00 42.97 3.74
3900 4466 9.772973 TTATCACTATACGCAAGGTAATTCATT 57.227 29.630 0.00 0.00 46.39 2.57
3957 4524 3.638160 TGCTTTCTCAAAGATTGCCAACT 59.362 39.130 0.01 0.00 41.02 3.16
3985 4552 1.067212 GTCATAGAGCTGTACCACCCG 59.933 57.143 0.00 0.00 0.00 5.28
3991 4558 2.031919 CTGTACCACCCGCTTGCA 59.968 61.111 0.00 0.00 0.00 4.08
4006 4573 3.508762 GCTTGCATTGAGGATGTTCTTG 58.491 45.455 0.00 0.00 38.07 3.02
4027 4594 2.253610 CTTGGTACCCACTACAGGTCA 58.746 52.381 10.07 0.00 38.89 4.02
4045 4612 4.134563 GGTCACCAATCAACTACACAGTT 58.865 43.478 0.00 0.00 46.15 3.16
4140 4707 6.097270 TGGCTTCATGCTATTGCTATCTTTTT 59.903 34.615 0.00 0.00 42.39 1.94
4141 4708 6.420008 GGCTTCATGCTATTGCTATCTTTTTG 59.580 38.462 0.00 0.00 42.39 2.44
4181 4748 8.279970 TGAACTGCTTACATGCTTAATAACAT 57.720 30.769 0.00 0.00 0.00 2.71
4245 4812 3.049912 GTTTCGAAATCAAAGTGGTGGC 58.950 45.455 14.69 0.00 0.00 5.01
4283 4850 4.332828 GGGTAGTGGCTACAAGAATGTTT 58.667 43.478 2.02 0.00 41.05 2.83
4313 4880 6.468543 ACACCAACCAGTTTAAACAACATTT 58.531 32.000 20.06 3.50 0.00 2.32
4391 4961 3.664025 TTGGATGCAGGAGCCGACG 62.664 63.158 0.00 0.00 41.13 5.12
4394 4964 2.125512 ATGCAGGAGCCGACGAAC 60.126 61.111 0.00 0.00 41.13 3.95
4395 4965 3.665675 ATGCAGGAGCCGACGAACC 62.666 63.158 0.00 0.00 41.13 3.62
4410 4980 1.611673 CGAACCTGTCAGGCCTTCATT 60.612 52.381 19.40 4.27 39.63 2.57
4411 4981 2.519013 GAACCTGTCAGGCCTTCATTT 58.481 47.619 19.40 3.51 39.63 2.32
4441 5011 7.112984 GGCTTTTCTTTTAACTGTGTTCATACG 59.887 37.037 0.00 0.00 0.00 3.06
4448 5018 3.896648 ACTGTGTTCATACGCCAAAAG 57.103 42.857 0.00 0.00 33.79 2.27
4495 5065 3.317993 AGTGAAGCTTTAAAATGGCGTGT 59.682 39.130 0.00 0.00 0.00 4.49
4506 5076 1.112315 ATGGCGTGTGCAAAAAGGGA 61.112 50.000 0.00 0.00 45.35 4.20
4510 5080 1.838913 CGTGTGCAAAAAGGGAACTG 58.161 50.000 0.00 0.00 42.68 3.16
4526 5096 4.338400 GGGAACTGTTATTCCTATGCCAAC 59.662 45.833 4.63 0.00 46.46 3.77
4534 5104 2.018542 TCCTATGCCAACGTACTTGC 57.981 50.000 0.00 0.00 0.00 4.01
4535 5105 1.276705 TCCTATGCCAACGTACTTGCA 59.723 47.619 0.00 0.00 0.00 4.08
4545 5115 5.236478 GCCAACGTACTTGCATATCTACAAT 59.764 40.000 0.00 0.00 0.00 2.71
4546 5116 6.649436 CCAACGTACTTGCATATCTACAATG 58.351 40.000 0.00 0.00 0.00 2.82
4547 5117 6.257849 CCAACGTACTTGCATATCTACAATGT 59.742 38.462 0.00 0.00 0.00 2.71
4548 5118 7.436970 CCAACGTACTTGCATATCTACAATGTA 59.563 37.037 0.00 0.00 0.00 2.29
4549 5119 7.925703 ACGTACTTGCATATCTACAATGTAC 57.074 36.000 0.00 0.00 32.80 2.90
4550 5120 7.713750 ACGTACTTGCATATCTACAATGTACT 58.286 34.615 0.00 0.00 33.32 2.73
4551 5121 8.195436 ACGTACTTGCATATCTACAATGTACTT 58.805 33.333 0.00 0.00 33.32 2.24
4552 5122 8.480066 CGTACTTGCATATCTACAATGTACTTG 58.520 37.037 0.00 0.00 40.90 3.16
4553 5123 7.251704 ACTTGCATATCTACAATGTACTTGC 57.748 36.000 0.00 0.00 38.50 4.01
4554 5124 5.905480 TGCATATCTACAATGTACTTGCG 57.095 39.130 0.00 0.00 38.50 4.85
4555 5125 5.356426 TGCATATCTACAATGTACTTGCGT 58.644 37.500 0.00 0.00 38.50 5.24
4556 5126 6.508777 TGCATATCTACAATGTACTTGCGTA 58.491 36.000 0.00 0.00 38.50 4.42
4557 5127 7.151976 TGCATATCTACAATGTACTTGCGTAT 58.848 34.615 0.00 0.00 38.50 3.06
4558 5128 8.301002 TGCATATCTACAATGTACTTGCGTATA 58.699 33.333 0.00 0.00 38.50 1.47
4559 5129 9.302345 GCATATCTACAATGTACTTGCGTATAT 57.698 33.333 0.00 0.00 38.50 0.86
4577 5147 7.147983 TGCGTATATACAAAATTTTCAGGCCTT 60.148 33.333 0.00 0.00 0.00 4.35
4627 5197 6.547141 AGGATGTGTACATATTCCAAATGTGG 59.453 38.462 18.40 0.00 40.67 4.17
4647 5217 5.109210 GTGGCCTTCCTACAAAAATAATGC 58.891 41.667 3.32 0.00 0.00 3.56
4650 5220 5.351458 GCCTTCCTACAAAAATAATGCCAG 58.649 41.667 0.00 0.00 0.00 4.85
4653 5223 6.152661 CCTTCCTACAAAAATAATGCCAGTGA 59.847 38.462 0.00 0.00 0.00 3.41
4686 5256 1.202510 GCATGCACAAAAAGGTCACCA 60.203 47.619 14.21 0.00 0.00 4.17
4704 5274 5.295787 GTCACCATTATTCTTATGCCAACGA 59.704 40.000 0.00 0.00 0.00 3.85
4705 5275 5.295787 TCACCATTATTCTTATGCCAACGAC 59.704 40.000 0.00 0.00 0.00 4.34
4720 5290 3.364062 CAACGACCTTGCGTATCTAGAG 58.636 50.000 0.00 0.00 44.86 2.43
4782 5597 5.218139 GCCTTTTGTCTCATGTTCTTGAAG 58.782 41.667 0.00 0.00 0.00 3.02
4791 5606 0.944386 TGTTCTTGAAGCGGACTTGC 59.056 50.000 0.00 0.00 35.82 4.01
4836 5651 6.346096 TCTGCTGTACAACTTTCAGTAACTT 58.654 36.000 0.00 0.00 0.00 2.66
5032 5871 7.121315 ACAGATCAGCCCAAAATTTAGAGTTAC 59.879 37.037 0.00 0.00 0.00 2.50
5118 5957 3.795877 GGAGTACAGTAGTAGTCGCTCT 58.204 50.000 0.00 0.00 46.90 4.09
5127 5966 3.613494 AGTAGTCGCTCTGTGTCTCTA 57.387 47.619 0.00 0.00 0.00 2.43
5140 5994 3.504134 TGTGTCTCTAGCTGAAGTCAGTC 59.496 47.826 9.94 2.99 45.45 3.51
5152 6006 3.133901 TGAAGTCAGTCAGTTTACAGCCA 59.866 43.478 0.00 0.00 0.00 4.75
5189 6043 6.994421 TTTGTATCCATGCCTGAGACTATA 57.006 37.500 0.00 0.00 0.00 1.31
5241 6095 1.684450 TCTCGACTTGTGTTGGCACTA 59.316 47.619 0.00 0.00 45.44 2.74
5278 6132 6.038356 CACCATTCTTGTTATTTCATCAGGC 58.962 40.000 0.00 0.00 0.00 4.85
5283 6137 6.844696 TCTTGTTATTTCATCAGGCGATAC 57.155 37.500 0.00 0.00 0.00 2.24
5352 6206 0.999406 ACATACAGACATTGCGCGAC 59.001 50.000 12.10 0.88 0.00 5.19
5685 6596 0.984230 AGGAGAAACGGCTGGAATCA 59.016 50.000 0.00 0.00 0.00 2.57
5693 6604 3.567797 GCTGGAATCACTCGCGGC 61.568 66.667 6.13 0.00 0.00 6.53
5694 6605 3.257561 CTGGAATCACTCGCGGCG 61.258 66.667 17.70 17.70 0.00 6.46
5768 6679 2.202987 CCATGAGGTGAGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
5845 6761 5.506317 GGTTCTGGTGAAGAAGACAAATGTG 60.506 44.000 0.00 0.00 45.69 3.21
5878 6794 6.036577 TGTGCATTCTACTAGTGTTGATGA 57.963 37.500 5.39 0.00 0.00 2.92
5881 6797 6.201806 GTGCATTCTACTAGTGTTGATGATCC 59.798 42.308 5.39 0.00 0.00 3.36
5884 6800 7.495901 CATTCTACTAGTGTTGATGATCCACT 58.504 38.462 5.39 8.90 41.93 4.00
5887 6803 5.336150 ACTAGTGTTGATGATCCACTGAG 57.664 43.478 12.64 9.21 39.63 3.35
5911 6828 0.732571 ACGACCTTGTGCTGTTGTTG 59.267 50.000 0.00 0.00 0.00 3.33
5912 6829 0.732571 CGACCTTGTGCTGTTGTTGT 59.267 50.000 0.00 0.00 0.00 3.32
5913 6830 1.132262 CGACCTTGTGCTGTTGTTGTT 59.868 47.619 0.00 0.00 0.00 2.83
6225 7148 6.751514 TTTGAGAAACCGCAATGTATGTAT 57.248 33.333 0.00 0.00 0.00 2.29
6227 7150 5.182487 TGAGAAACCGCAATGTATGTATGT 58.818 37.500 0.00 0.00 0.00 2.29
6228 7151 5.645929 TGAGAAACCGCAATGTATGTATGTT 59.354 36.000 0.00 0.00 0.00 2.71
6232 7155 5.839262 ACCGCAATGTATGTATGTTATCG 57.161 39.130 0.00 0.00 0.00 2.92
6234 7157 5.633601 ACCGCAATGTATGTATGTTATCGAG 59.366 40.000 0.00 0.00 0.00 4.04
6236 7159 6.183359 CCGCAATGTATGTATGTTATCGAGTC 60.183 42.308 0.00 0.00 0.00 3.36
6237 7160 6.183359 CGCAATGTATGTATGTTATCGAGTCC 60.183 42.308 0.00 0.00 0.00 3.85
6238 7161 6.645003 GCAATGTATGTATGTTATCGAGTCCA 59.355 38.462 0.00 0.00 0.00 4.02
6239 7162 7.331934 GCAATGTATGTATGTTATCGAGTCCAT 59.668 37.037 0.00 0.00 0.00 3.41
6242 7165 7.368059 TGTATGTATGTTATCGAGTCCATGAC 58.632 38.462 0.00 0.00 0.00 3.06
6243 7166 5.196341 TGTATGTTATCGAGTCCATGACC 57.804 43.478 0.00 0.00 32.18 4.02
6244 7167 4.893524 TGTATGTTATCGAGTCCATGACCT 59.106 41.667 0.00 0.00 32.18 3.85
6246 7169 2.159099 TGTTATCGAGTCCATGACCTGC 60.159 50.000 0.00 0.00 32.18 4.85
6248 7171 0.463204 ATCGAGTCCATGACCTGCAG 59.537 55.000 6.78 6.78 32.18 4.41
6251 7174 1.202348 CGAGTCCATGACCTGCAGTAG 60.202 57.143 13.81 0.00 32.18 2.57
6253 7176 1.552337 AGTCCATGACCTGCAGTAGTG 59.448 52.381 13.81 5.86 32.18 2.74
6270 7305 7.093771 TGCAGTAGTGAATGAAATGTAGAGAGA 60.094 37.037 0.42 0.00 0.00 3.10
6271 7306 7.221838 GCAGTAGTGAATGAAATGTAGAGAGAC 59.778 40.741 0.42 0.00 0.00 3.36
6272 7307 8.246871 CAGTAGTGAATGAAATGTAGAGAGACA 58.753 37.037 0.00 0.00 0.00 3.41
6275 7310 7.546358 AGTGAATGAAATGTAGAGAGACAGAG 58.454 38.462 0.00 0.00 31.51 3.35
6276 7311 7.395772 AGTGAATGAAATGTAGAGAGACAGAGA 59.604 37.037 0.00 0.00 31.51 3.10
6280 7315 7.389803 TGAAATGTAGAGAGACAGAGAAGAG 57.610 40.000 0.00 0.00 31.51 2.85
6285 7320 6.976088 TGTAGAGAGACAGAGAAGAGTTTTG 58.024 40.000 0.00 0.00 0.00 2.44
6286 7321 6.773200 TGTAGAGAGACAGAGAAGAGTTTTGA 59.227 38.462 0.00 0.00 0.00 2.69
6288 7323 6.924111 AGAGAGACAGAGAAGAGTTTTGATC 58.076 40.000 0.00 0.00 0.00 2.92
6289 7324 5.708948 AGAGACAGAGAAGAGTTTTGATCG 58.291 41.667 0.00 0.00 0.00 3.69
6291 7326 6.152661 AGAGACAGAGAAGAGTTTTGATCGAT 59.847 38.462 0.00 0.00 0.00 3.59
6292 7327 6.098679 AGACAGAGAAGAGTTTTGATCGATG 58.901 40.000 0.54 0.00 0.00 3.84
6294 7329 4.033817 CAGAGAAGAGTTTTGATCGATGCC 59.966 45.833 0.54 0.00 0.00 4.40
6295 7330 4.081198 AGAGAAGAGTTTTGATCGATGCCT 60.081 41.667 0.54 0.00 0.00 4.75
6296 7331 3.937706 AGAAGAGTTTTGATCGATGCCTG 59.062 43.478 0.54 0.00 0.00 4.85
6297 7332 2.012673 AGAGTTTTGATCGATGCCTGC 58.987 47.619 0.54 0.00 0.00 4.85
6298 7333 1.739466 GAGTTTTGATCGATGCCTGCA 59.261 47.619 0.54 0.00 0.00 4.41
6299 7334 2.161855 AGTTTTGATCGATGCCTGCAA 58.838 42.857 0.54 0.00 0.00 4.08
6300 7335 2.756760 AGTTTTGATCGATGCCTGCAAT 59.243 40.909 0.54 0.00 0.00 3.56
6301 7336 2.855660 TTTGATCGATGCCTGCAATG 57.144 45.000 0.54 0.00 0.00 2.82
6313 7348 2.286872 CCTGCAATGTGCCAACAAAAA 58.713 42.857 0.00 0.00 44.23 1.94
6337 7372 8.814038 AAAATTGTGCCAGAAAGTCTATCTAT 57.186 30.769 0.00 0.00 0.00 1.98
6338 7373 8.443953 AAATTGTGCCAGAAAGTCTATCTATC 57.556 34.615 0.00 0.00 0.00 2.08
6340 7375 4.962362 TGTGCCAGAAAGTCTATCTATCCA 59.038 41.667 0.00 0.00 0.00 3.41
6341 7376 5.604231 TGTGCCAGAAAGTCTATCTATCCAT 59.396 40.000 0.00 0.00 0.00 3.41
6342 7377 6.782494 TGTGCCAGAAAGTCTATCTATCCATA 59.218 38.462 0.00 0.00 0.00 2.74
6343 7378 7.290014 TGTGCCAGAAAGTCTATCTATCCATAA 59.710 37.037 0.00 0.00 0.00 1.90
6344 7379 8.317679 GTGCCAGAAAGTCTATCTATCCATAAT 58.682 37.037 0.00 0.00 0.00 1.28
6345 7380 9.547279 TGCCAGAAAGTCTATCTATCCATAATA 57.453 33.333 0.00 0.00 0.00 0.98
6385 7420 1.685224 CTGGCTGCCAAAGGAGGTA 59.315 57.895 23.51 0.00 30.80 3.08
6386 7421 0.678048 CTGGCTGCCAAAGGAGGTAC 60.678 60.000 23.51 0.00 30.80 3.34
6394 7429 1.073923 CCAAAGGAGGTACTGGCAACT 59.926 52.381 0.00 0.00 41.55 3.16
6395 7430 2.304761 CCAAAGGAGGTACTGGCAACTA 59.695 50.000 0.00 0.00 41.55 2.24
6396 7431 3.600388 CAAAGGAGGTACTGGCAACTAG 58.400 50.000 0.00 0.00 41.55 2.57
6398 7433 0.902531 GGAGGTACTGGCAACTAGCA 59.097 55.000 0.00 0.00 43.51 3.49
6399 7434 1.278127 GGAGGTACTGGCAACTAGCAA 59.722 52.381 0.00 0.00 43.51 3.91
6401 7436 3.003480 GAGGTACTGGCAACTAGCAAAG 58.997 50.000 0.00 0.00 43.51 2.77
6402 7437 4.721563 GAGGTACTGGCAACTAGCAAAGC 61.722 52.174 0.00 0.00 43.51 3.51
6596 7708 2.838693 GTACGCCTCCCCTCCTCC 60.839 72.222 0.00 0.00 0.00 4.30
6597 7709 3.028098 TACGCCTCCCCTCCTCCT 61.028 66.667 0.00 0.00 0.00 3.69
6599 7711 4.150454 CGCCTCCCCTCCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
6600 7712 2.123033 GCCTCCCCTCCTCCTCTC 60.123 72.222 0.00 0.00 0.00 3.20
6601 7713 2.612251 CCTCCCCTCCTCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
6602 7714 2.197324 CTCCCCTCCTCCTCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
6638 7750 0.662619 TTTCAAACTCCACTGCAGCG 59.337 50.000 15.27 3.57 0.00 5.18
6813 7958 1.682684 GAGGCGGTTCTCCTCCAGA 60.683 63.158 0.00 0.00 43.32 3.86
6899 8056 1.004891 GGAAGGGAGGAGGGGATGT 59.995 63.158 0.00 0.00 0.00 3.06
6902 8059 2.367512 GGGAGGAGGGGATGTGCT 60.368 66.667 0.00 0.00 0.00 4.40
6903 8060 2.003548 GGGAGGAGGGGATGTGCTT 61.004 63.158 0.00 0.00 0.00 3.91
6913 8070 1.817099 GATGTGCTTGCGGAGGAGG 60.817 63.158 0.00 0.00 0.00 4.30
6939 8105 3.780173 GAGGAGGCGCTGGAGCTT 61.780 66.667 7.64 0.00 39.32 3.74
7035 8201 1.210931 CATGGACAAGGTGCTTGCG 59.789 57.895 0.00 0.00 44.43 4.85
7036 8202 2.629656 ATGGACAAGGTGCTTGCGC 61.630 57.895 0.00 0.00 44.43 6.09
7037 8203 4.389576 GGACAAGGTGCTTGCGCG 62.390 66.667 0.00 0.00 44.43 6.86
7063 8229 2.094957 CCGCTCTCTTTCTCTCTCGTTT 60.095 50.000 0.00 0.00 0.00 3.60
7064 8230 3.127203 CCGCTCTCTTTCTCTCTCGTTTA 59.873 47.826 0.00 0.00 0.00 2.01
7065 8231 4.339429 CGCTCTCTTTCTCTCTCGTTTAG 58.661 47.826 0.00 0.00 0.00 1.85
7066 8232 4.668289 GCTCTCTTTCTCTCTCGTTTAGG 58.332 47.826 0.00 0.00 0.00 2.69
7067 8233 4.439563 GCTCTCTTTCTCTCTCGTTTAGGG 60.440 50.000 0.00 0.00 0.00 3.53
7068 8234 4.017808 TCTCTTTCTCTCTCGTTTAGGGG 58.982 47.826 0.00 0.00 0.00 4.79
7070 8236 1.933021 TTCTCTCTCGTTTAGGGGCA 58.067 50.000 0.00 0.00 0.00 5.36
7072 8238 2.467880 TCTCTCTCGTTTAGGGGCATT 58.532 47.619 0.00 0.00 0.00 3.56
7073 8239 2.838202 TCTCTCTCGTTTAGGGGCATTT 59.162 45.455 0.00 0.00 0.00 2.32
7074 8240 3.118738 TCTCTCTCGTTTAGGGGCATTTC 60.119 47.826 0.00 0.00 0.00 2.17
7075 8241 2.838202 TCTCTCGTTTAGGGGCATTTCT 59.162 45.455 0.00 0.00 0.00 2.52
7088 8258 5.127682 AGGGGCATTTCTTACTGCTTAATTG 59.872 40.000 0.00 0.00 38.45 2.32
7099 8269 3.070018 CTGCTTAATTGGCCTCTATCCG 58.930 50.000 3.32 0.00 0.00 4.18
7100 8270 1.807142 GCTTAATTGGCCTCTATCCGC 59.193 52.381 3.32 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 0.599204 GAAAACAGCGTCAGTCCGGA 60.599 55.000 0.00 0.00 0.00 5.14
107 108 3.452474 TGCACAAAACAACAATGGTAGC 58.548 40.909 0.00 0.00 0.00 3.58
115 116 7.897575 ACTTTTATTTCTGCACAAAACAACA 57.102 28.000 0.00 0.00 0.00 3.33
118 119 8.770438 AAGAACTTTTATTTCTGCACAAAACA 57.230 26.923 0.00 0.00 33.46 2.83
143 150 5.865552 CCTCGTAAAGTTTCGTTCCAATCTA 59.134 40.000 0.00 0.00 0.00 1.98
201 210 2.669240 CCCCTCCGGTGGTTCTTC 59.331 66.667 20.78 0.00 0.00 2.87
255 270 3.267233 ACCTGGGCATGCCTGGAA 61.267 61.111 37.55 22.32 35.13 3.53
382 401 2.995283 TGAAGAACATGAGATGGCAGG 58.005 47.619 0.00 0.00 33.60 4.85
425 444 2.528127 TCTCCGGAGCCCCAAACA 60.528 61.111 27.39 3.56 0.00 2.83
456 475 0.324943 AGGGTTGGTGATGACGAAGG 59.675 55.000 0.00 0.00 0.00 3.46
480 499 4.318332 GGAGCATCATGGAATTGACGATA 58.682 43.478 0.00 0.00 36.25 2.92
485 504 1.570024 TGGGGAGCATCATGGAATTGA 59.430 47.619 0.00 0.00 36.25 2.57
574 594 5.686753 TCAAGCCCTAACAAAACTAACTCA 58.313 37.500 0.00 0.00 0.00 3.41
644 665 5.349270 GCAAAATGACAAGCATTAAGCATGA 59.651 36.000 0.00 0.00 46.25 3.07
673 694 3.201487 TCAGATCTGAAATCATGGCACCT 59.799 43.478 23.17 0.00 36.53 4.00
736 757 5.453339 GCATACACACTATGGTCCACACTAT 60.453 44.000 0.00 0.00 0.00 2.12
737 758 4.142026 GCATACACACTATGGTCCACACTA 60.142 45.833 0.00 0.00 0.00 2.74
738 759 3.369471 GCATACACACTATGGTCCACACT 60.369 47.826 0.00 0.00 0.00 3.55
739 760 2.936498 GCATACACACTATGGTCCACAC 59.064 50.000 0.00 0.00 0.00 3.82
740 761 2.418060 CGCATACACACTATGGTCCACA 60.418 50.000 0.00 0.00 0.00 4.17
741 762 2.159156 TCGCATACACACTATGGTCCAC 60.159 50.000 0.00 0.00 0.00 4.02
742 763 2.100749 CTCGCATACACACTATGGTCCA 59.899 50.000 0.00 0.00 0.00 4.02
743 764 2.100916 ACTCGCATACACACTATGGTCC 59.899 50.000 0.00 0.00 0.00 4.46
744 765 3.116300 CACTCGCATACACACTATGGTC 58.884 50.000 0.00 0.00 0.00 4.02
745 766 2.496070 ACACTCGCATACACACTATGGT 59.504 45.455 0.00 0.00 0.00 3.55
746 767 2.860136 CACACTCGCATACACACTATGG 59.140 50.000 0.00 0.00 0.00 2.74
747 768 2.860136 CCACACTCGCATACACACTATG 59.140 50.000 0.00 0.00 0.00 2.23
748 769 2.738643 GCCACACTCGCATACACACTAT 60.739 50.000 0.00 0.00 0.00 2.12
749 770 1.403647 GCCACACTCGCATACACACTA 60.404 52.381 0.00 0.00 0.00 2.74
750 771 0.670546 GCCACACTCGCATACACACT 60.671 55.000 0.00 0.00 0.00 3.55
751 772 0.670546 AGCCACACTCGCATACACAC 60.671 55.000 0.00 0.00 0.00 3.82
752 773 0.034756 AAGCCACACTCGCATACACA 59.965 50.000 0.00 0.00 0.00 3.72
753 774 0.443869 CAAGCCACACTCGCATACAC 59.556 55.000 0.00 0.00 0.00 2.90
754 775 1.298157 GCAAGCCACACTCGCATACA 61.298 55.000 0.00 0.00 0.00 2.29
755 776 1.425428 GCAAGCCACACTCGCATAC 59.575 57.895 0.00 0.00 0.00 2.39
756 777 1.745115 GGCAAGCCACACTCGCATA 60.745 57.895 6.14 0.00 35.81 3.14
757 778 2.184020 TAGGCAAGCCACACTCGCAT 62.184 55.000 14.40 0.00 38.92 4.73
758 779 2.390306 TTAGGCAAGCCACACTCGCA 62.390 55.000 14.40 0.00 38.92 5.10
759 780 1.639298 CTTAGGCAAGCCACACTCGC 61.639 60.000 14.40 0.00 38.92 5.03
760 781 0.037326 TCTTAGGCAAGCCACACTCG 60.037 55.000 14.40 0.00 38.92 4.18
761 782 2.012673 CATCTTAGGCAAGCCACACTC 58.987 52.381 14.40 0.00 38.92 3.51
762 783 1.352352 ACATCTTAGGCAAGCCACACT 59.648 47.619 14.40 0.00 38.92 3.55
763 784 1.470098 CACATCTTAGGCAAGCCACAC 59.530 52.381 14.40 0.00 38.92 3.82
764 785 1.614051 CCACATCTTAGGCAAGCCACA 60.614 52.381 14.40 0.00 38.92 4.17
765 786 1.098050 CCACATCTTAGGCAAGCCAC 58.902 55.000 14.40 0.00 38.92 5.01
766 787 3.575506 CCACATCTTAGGCAAGCCA 57.424 52.632 14.40 0.00 38.92 4.75
773 794 5.221224 TGTTTTGTTCAAGCCACATCTTAGG 60.221 40.000 0.00 0.00 0.00 2.69
774 795 5.687285 GTGTTTTGTTCAAGCCACATCTTAG 59.313 40.000 9.89 0.00 0.00 2.18
775 796 5.126222 TGTGTTTTGTTCAAGCCACATCTTA 59.874 36.000 12.09 0.00 0.00 2.10
776 797 4.081752 TGTGTTTTGTTCAAGCCACATCTT 60.082 37.500 12.09 0.00 0.00 2.40
777 798 3.446873 TGTGTTTTGTTCAAGCCACATCT 59.553 39.130 12.09 0.00 0.00 2.90
778 799 3.551485 GTGTGTTTTGTTCAAGCCACATC 59.449 43.478 16.28 10.19 33.25 3.06
779 800 3.056250 TGTGTGTTTTGTTCAAGCCACAT 60.056 39.130 16.28 0.00 33.25 3.21
780 801 2.297315 TGTGTGTTTTGTTCAAGCCACA 59.703 40.909 12.09 12.09 30.10 4.17
781 802 2.666022 GTGTGTGTTTTGTTCAAGCCAC 59.334 45.455 8.61 8.61 0.00 5.01
782 803 2.353208 GGTGTGTGTTTTGTTCAAGCCA 60.353 45.455 0.00 0.00 0.00 4.75
783 804 2.094234 AGGTGTGTGTTTTGTTCAAGCC 60.094 45.455 0.00 0.00 0.00 4.35
784 805 3.230743 AGGTGTGTGTTTTGTTCAAGC 57.769 42.857 0.00 0.00 0.00 4.01
785 806 7.201513 CCAATTTAGGTGTGTGTTTTGTTCAAG 60.202 37.037 0.00 0.00 0.00 3.02
786 807 6.591834 CCAATTTAGGTGTGTGTTTTGTTCAA 59.408 34.615 0.00 0.00 0.00 2.69
787 808 6.102663 CCAATTTAGGTGTGTGTTTTGTTCA 58.897 36.000 0.00 0.00 0.00 3.18
788 809 6.103330 ACCAATTTAGGTGTGTGTTTTGTTC 58.897 36.000 0.00 0.00 41.30 3.18
789 810 6.043854 ACCAATTTAGGTGTGTGTTTTGTT 57.956 33.333 0.00 0.00 41.30 2.83
790 811 5.186021 TGACCAATTTAGGTGTGTGTTTTGT 59.814 36.000 0.00 0.00 43.38 2.83
791 812 5.655488 TGACCAATTTAGGTGTGTGTTTTG 58.345 37.500 0.00 0.00 43.38 2.44
792 813 5.923733 TGACCAATTTAGGTGTGTGTTTT 57.076 34.783 0.00 0.00 43.38 2.43
793 814 5.923733 TTGACCAATTTAGGTGTGTGTTT 57.076 34.783 0.00 0.00 43.38 2.83
794 815 5.420739 AGTTTGACCAATTTAGGTGTGTGTT 59.579 36.000 0.00 0.00 43.38 3.32
795 816 4.953579 AGTTTGACCAATTTAGGTGTGTGT 59.046 37.500 0.00 0.00 43.38 3.72
796 817 5.514274 AGTTTGACCAATTTAGGTGTGTG 57.486 39.130 0.00 0.00 43.38 3.82
797 818 5.681179 GCAAGTTTGACCAATTTAGGTGTGT 60.681 40.000 0.00 0.00 43.38 3.72
798 819 4.744631 GCAAGTTTGACCAATTTAGGTGTG 59.255 41.667 0.00 0.00 43.38 3.82
799 820 4.202212 GGCAAGTTTGACCAATTTAGGTGT 60.202 41.667 0.00 0.00 43.38 4.16
800 821 4.039124 AGGCAAGTTTGACCAATTTAGGTG 59.961 41.667 0.00 0.00 43.38 4.00
801 822 4.223144 AGGCAAGTTTGACCAATTTAGGT 58.777 39.130 0.00 0.00 46.82 3.08
802 823 4.871933 AGGCAAGTTTGACCAATTTAGG 57.128 40.909 0.00 0.00 36.67 2.69
803 824 6.015434 AGGTTAGGCAAGTTTGACCAATTTAG 60.015 38.462 0.00 0.00 36.67 1.85
804 825 5.836358 AGGTTAGGCAAGTTTGACCAATTTA 59.164 36.000 0.00 0.00 36.67 1.40
805 826 4.653801 AGGTTAGGCAAGTTTGACCAATTT 59.346 37.500 0.00 0.00 36.67 1.82
806 827 4.223144 AGGTTAGGCAAGTTTGACCAATT 58.777 39.130 0.00 0.00 36.67 2.32
807 828 3.844640 AGGTTAGGCAAGTTTGACCAAT 58.155 40.909 0.00 0.00 36.67 3.16
808 829 3.306472 AGGTTAGGCAAGTTTGACCAA 57.694 42.857 0.00 0.00 36.67 3.67
809 830 3.306472 AAGGTTAGGCAAGTTTGACCA 57.694 42.857 0.00 0.00 36.67 4.02
810 831 5.777850 TTTAAGGTTAGGCAAGTTTGACC 57.222 39.130 0.00 0.00 36.67 4.02
811 832 6.640907 CACATTTAAGGTTAGGCAAGTTTGAC 59.359 38.462 0.00 0.00 36.08 3.18
812 833 6.239176 CCACATTTAAGGTTAGGCAAGTTTGA 60.239 38.462 0.00 0.00 0.00 2.69
813 834 5.925969 CCACATTTAAGGTTAGGCAAGTTTG 59.074 40.000 0.00 0.00 0.00 2.93
814 835 5.510690 GCCACATTTAAGGTTAGGCAAGTTT 60.511 40.000 6.29 0.00 40.29 2.66
815 836 4.021456 GCCACATTTAAGGTTAGGCAAGTT 60.021 41.667 6.29 0.00 40.29 2.66
816 837 3.509967 GCCACATTTAAGGTTAGGCAAGT 59.490 43.478 6.29 0.00 40.29 3.16
817 838 3.509575 TGCCACATTTAAGGTTAGGCAAG 59.490 43.478 10.58 0.00 46.55 4.01
818 839 3.501349 TGCCACATTTAAGGTTAGGCAA 58.499 40.909 10.58 0.00 46.55 4.52
820 841 3.181476 CCATGCCACATTTAAGGTTAGGC 60.181 47.826 4.49 4.49 40.93 3.93
821 842 4.277476 TCCATGCCACATTTAAGGTTAGG 58.723 43.478 0.00 0.00 0.00 2.69
822 843 5.835257 CATCCATGCCACATTTAAGGTTAG 58.165 41.667 0.00 0.00 0.00 2.34
823 844 5.850557 CATCCATGCCACATTTAAGGTTA 57.149 39.130 0.00 0.00 0.00 2.85
824 845 4.741321 CATCCATGCCACATTTAAGGTT 57.259 40.909 0.00 0.00 0.00 3.50
838 859 3.646976 CTCGCCGCTGCATCCATG 61.647 66.667 0.00 0.00 37.32 3.66
859 880 2.044555 GTCCAAAACCGCCTAGGGC 61.045 63.158 11.72 1.76 46.96 5.19
860 881 1.378119 GGTCCAAAACCGCCTAGGG 60.378 63.158 11.72 0.14 46.96 3.53
892 913 0.388520 CAACATCTCTCCGCACACGA 60.389 55.000 0.00 0.00 43.93 4.35
893 914 1.959899 GCAACATCTCTCCGCACACG 61.960 60.000 0.00 0.00 39.67 4.49
914 936 6.179906 TGCTCCCTAAGATTTCTGGATTAG 57.820 41.667 0.00 0.00 0.00 1.73
1071 1093 3.003763 GGGAAGGCTCGGGACTGT 61.004 66.667 0.00 0.00 0.00 3.55
1142 1164 4.986708 GCTTGGCGGGGTGGGAAA 62.987 66.667 0.00 0.00 0.00 3.13
1417 1439 1.331214 AGTGGACCAAAACTGCCATG 58.669 50.000 0.00 0.00 32.26 3.66
1565 1587 4.543744 TCTGGCCTCTCCATCTAGAGATAT 59.456 45.833 3.32 0.00 44.93 1.63
1596 1618 8.862325 ATTAAGTGTTGACTATCAAATGGACA 57.138 30.769 0.00 0.00 38.22 4.02
1737 1765 3.897505 GGGTGCATAAGCCCATAGAAAAT 59.102 43.478 5.25 0.00 44.23 1.82
1740 1768 1.202758 CGGGTGCATAAGCCCATAGAA 60.203 52.381 10.51 0.00 45.07 2.10
1741 1769 0.396435 CGGGTGCATAAGCCCATAGA 59.604 55.000 10.51 0.00 45.07 1.98
1753 1781 1.517361 CAGACTATCAGCGGGTGCA 59.483 57.895 1.51 0.00 46.23 4.57
1864 1892 1.760192 AATCAGATGCAGTGCTTCCC 58.240 50.000 23.32 7.72 33.95 3.97
2127 2163 4.695217 TCATTTTTCTGGACGGTAATGC 57.305 40.909 0.00 0.00 0.00 3.56
2190 2288 8.436834 TGAACTGTTCACATTACATGAGCATCA 61.437 37.037 18.69 0.00 42.23 3.07
2211 2310 5.087323 TCAGGGATAAGTCTGAAGTGAACT 58.913 41.667 0.00 0.00 37.11 3.01
2226 2325 6.721318 ACTGAGCAAACTAAATTCAGGGATA 58.279 36.000 4.99 0.00 39.57 2.59
2334 2433 1.901591 CAGGTTTCCTGTGCAGATGT 58.098 50.000 7.55 0.00 45.82 3.06
2601 2700 5.639082 ACACACACACACACATACAGATATG 59.361 40.000 0.00 0.00 43.46 1.78
2606 2705 2.935849 ACACACACACACACACATACAG 59.064 45.455 0.00 0.00 0.00 2.74
2608 2707 2.675844 ACACACACACACACACACATAC 59.324 45.455 0.00 0.00 0.00 2.39
2609 2708 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
2610 2709 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
2628 2727 0.521291 AACTGCACACACACACACAC 59.479 50.000 0.00 0.00 0.00 3.82
2629 2728 0.520847 CAACTGCACACACACACACA 59.479 50.000 0.00 0.00 0.00 3.72
2630 2729 0.179166 CCAACTGCACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
2631 2730 0.607762 ACCAACTGCACACACACACA 60.608 50.000 0.00 0.00 0.00 3.72
2632 2731 0.525761 AACCAACTGCACACACACAC 59.474 50.000 0.00 0.00 0.00 3.82
2633 2732 0.525311 CAACCAACTGCACACACACA 59.475 50.000 0.00 0.00 0.00 3.72
2634 2733 0.525761 ACAACCAACTGCACACACAC 59.474 50.000 0.00 0.00 0.00 3.82
2635 2734 1.067985 CAACAACCAACTGCACACACA 60.068 47.619 0.00 0.00 0.00 3.72
2636 2735 1.067915 ACAACAACCAACTGCACACAC 60.068 47.619 0.00 0.00 0.00 3.82
2637 2736 1.252175 ACAACAACCAACTGCACACA 58.748 45.000 0.00 0.00 0.00 3.72
2638 2737 2.362169 AACAACAACCAACTGCACAC 57.638 45.000 0.00 0.00 0.00 3.82
2639 2738 4.727507 AATAACAACAACCAACTGCACA 57.272 36.364 0.00 0.00 0.00 4.57
2640 2739 7.145323 AGATAAATAACAACAACCAACTGCAC 58.855 34.615 0.00 0.00 0.00 4.57
2746 2845 5.736951 ATGCTCTGGATGGATAAGAGTAC 57.263 43.478 0.00 0.00 39.72 2.73
2765 2864 9.117145 CACATTATAATGATAACAACCGAATGC 57.883 33.333 28.13 0.00 39.67 3.56
2965 3064 6.054860 ACTAGTGCAATCTCAGGTTGTTAT 57.945 37.500 0.00 0.00 0.00 1.89
2966 3065 5.483685 ACTAGTGCAATCTCAGGTTGTTA 57.516 39.130 0.00 0.00 0.00 2.41
3047 3148 1.896220 TGTTCTTCATGTCCACAGCC 58.104 50.000 0.00 0.00 0.00 4.85
3117 3218 2.663279 AGACGTAGCTTGCAAAAACG 57.337 45.000 20.10 20.10 39.37 3.60
3119 3220 5.682943 ATGTAAGACGTAGCTTGCAAAAA 57.317 34.783 10.88 0.00 42.34 1.94
3120 3221 5.008217 ACAATGTAAGACGTAGCTTGCAAAA 59.992 36.000 10.88 0.00 42.34 2.44
3121 3222 4.513692 ACAATGTAAGACGTAGCTTGCAAA 59.486 37.500 10.88 0.00 42.34 3.68
3122 3223 4.062293 ACAATGTAAGACGTAGCTTGCAA 58.938 39.130 10.88 0.00 42.34 4.08
3123 3224 3.431912 CACAATGTAAGACGTAGCTTGCA 59.568 43.478 9.58 9.58 43.02 4.08
3124 3225 3.181520 CCACAATGTAAGACGTAGCTTGC 60.182 47.826 0.00 0.00 0.00 4.01
3126 3227 3.259876 TCCCACAATGTAAGACGTAGCTT 59.740 43.478 0.00 0.00 0.00 3.74
3129 3230 4.082408 TCTGTCCCACAATGTAAGACGTAG 60.082 45.833 9.46 4.20 0.00 3.51
3130 3231 3.827876 TCTGTCCCACAATGTAAGACGTA 59.172 43.478 9.46 0.00 0.00 3.57
3139 3696 0.987294 ACTCCCTCTGTCCCACAATG 59.013 55.000 0.00 0.00 0.00 2.82
3501 4067 3.558608 ACTTGAAATGGGGAAATGGGA 57.441 42.857 0.00 0.00 0.00 4.37
3510 4076 7.467267 CGGAACAATCTACATACTTGAAATGGG 60.467 40.741 0.00 0.00 0.00 4.00
3518 4084 6.100004 CAGACACGGAACAATCTACATACTT 58.900 40.000 0.00 0.00 0.00 2.24
3520 4086 4.267928 GCAGACACGGAACAATCTACATAC 59.732 45.833 0.00 0.00 0.00 2.39
3535 4101 1.695813 CTCTTCACAGAGCAGACACG 58.304 55.000 0.00 0.00 40.39 4.49
3555 4121 9.679661 TGGTGCTGAAGTAAATATCTAAATCAA 57.320 29.630 0.00 0.00 0.00 2.57
3571 4137 5.695851 AATCAACTAACTTGGTGCTGAAG 57.304 39.130 0.00 0.00 0.00 3.02
3580 4146 7.754924 ACAGTTCACACAAAATCAACTAACTTG 59.245 33.333 0.00 0.00 0.00 3.16
3594 4160 1.134250 TGCAGCCTACAGTTCACACAA 60.134 47.619 0.00 0.00 0.00 3.33
3674 4240 1.170442 CACTCATGGCACTGCATTCA 58.830 50.000 2.82 0.00 0.00 2.57
3780 4346 0.664224 CTGTCACAACATGCTGCACA 59.336 50.000 3.57 0.00 34.13 4.57
3785 4351 0.820482 TGCTGCTGTCACAACATGCT 60.820 50.000 0.00 0.00 34.13 3.79
3912 4478 7.553044 AGCAGGGTATAGTTATTCAGAAAACAC 59.447 37.037 9.49 0.00 0.00 3.32
3914 4480 8.507524 AAGCAGGGTATAGTTATTCAGAAAAC 57.492 34.615 0.00 0.00 0.00 2.43
3957 4524 5.012664 TGGTACAGCTCTATGACCTGAAAAA 59.987 40.000 0.00 0.00 0.00 1.94
3985 4552 3.508762 CAAGAACATCCTCAATGCAAGC 58.491 45.455 0.00 0.00 39.12 4.01
3991 4558 3.771216 ACCAAGCAAGAACATCCTCAAT 58.229 40.909 0.00 0.00 0.00 2.57
4045 4612 3.083293 TGATGCAACATTAAGCTGCTCA 58.917 40.909 1.00 0.00 40.01 4.26
4066 4633 9.869667 ACCTGATAAGTGTAGTACAATCTATCT 57.130 33.333 20.62 8.04 0.00 1.98
4123 4690 8.777413 CATAGTAGCAAAAAGATAGCAATAGCA 58.223 33.333 0.00 0.00 45.49 3.49
4235 4802 0.109342 CCACAGAGAGCCACCACTTT 59.891 55.000 0.00 0.00 0.00 2.66
4245 4812 2.046892 CCCAACGGCCACAGAGAG 60.047 66.667 2.24 0.00 0.00 3.20
4283 4850 7.406031 TGTTTAAACTGGTTGGTGTTATTCA 57.594 32.000 18.72 0.00 0.00 2.57
4333 4900 1.346722 AGGCGCCTACAACTTACAAGT 59.653 47.619 31.86 0.00 42.04 3.16
4341 4908 0.676782 ATCCAACAGGCGCCTACAAC 60.677 55.000 32.30 0.00 0.00 3.32
4391 4961 2.206576 AATGAAGGCCTGACAGGTTC 57.793 50.000 22.58 18.30 37.80 3.62
4410 4980 7.971183 ACACAGTTAAAAGAAAAGCCAAAAA 57.029 28.000 0.00 0.00 0.00 1.94
4411 4981 7.657761 TGAACACAGTTAAAAGAAAAGCCAAAA 59.342 29.630 0.00 0.00 0.00 2.44
4441 5011 3.350219 TCTAGGATGGTCACTTTTGGC 57.650 47.619 0.00 0.00 0.00 4.52
4448 5018 5.354513 GGCTTTACTTTTCTAGGATGGTCAC 59.645 44.000 0.00 0.00 0.00 3.67
4483 5053 3.126831 CCTTTTTGCACACGCCATTTTA 58.873 40.909 0.00 0.00 37.32 1.52
4495 5065 5.208463 GGAATAACAGTTCCCTTTTTGCA 57.792 39.130 0.00 0.00 41.48 4.08
4506 5076 4.585879 ACGTTGGCATAGGAATAACAGTT 58.414 39.130 0.00 0.00 0.00 3.16
4510 5080 5.503520 GCAAGTACGTTGGCATAGGAATAAC 60.504 44.000 0.00 0.00 36.56 1.89
4526 5096 8.480066 CAAGTACATTGTAGATATGCAAGTACG 58.520 37.037 16.73 7.57 36.10 3.67
4550 5120 6.975772 GGCCTGAAAATTTTGTATATACGCAA 59.024 34.615 8.47 4.03 0.00 4.85
4551 5121 6.320164 AGGCCTGAAAATTTTGTATATACGCA 59.680 34.615 3.11 0.00 0.00 5.24
4552 5122 6.735130 AGGCCTGAAAATTTTGTATATACGC 58.265 36.000 3.11 1.21 0.00 4.42
4553 5123 8.402472 TGAAGGCCTGAAAATTTTGTATATACG 58.598 33.333 5.69 0.00 0.00 3.06
4627 5197 5.105351 ACTGGCATTATTTTTGTAGGAAGGC 60.105 40.000 0.00 0.00 0.00 4.35
4647 5217 2.890311 TGCCATTGTAAGGTTTCACTGG 59.110 45.455 2.49 2.49 37.42 4.00
4650 5220 3.253230 GCATGCCATTGTAAGGTTTCAC 58.747 45.455 6.36 0.00 0.00 3.18
4653 5223 2.632028 TGTGCATGCCATTGTAAGGTTT 59.368 40.909 16.68 0.00 0.00 3.27
4686 5256 5.221048 GCAAGGTCGTTGGCATAAGAATAAT 60.221 40.000 7.35 0.00 36.56 1.28
4704 5274 1.776662 TGCCTCTAGATACGCAAGGT 58.223 50.000 6.78 0.00 46.39 3.50
4705 5275 2.890808 TTGCCTCTAGATACGCAAGG 57.109 50.000 14.64 3.39 46.39 3.61
4720 5290 8.129211 ACTAATAGTGAAATCGCTAAATTTGCC 58.871 33.333 7.70 0.00 41.62 4.52
4782 5597 2.146073 AAACCATGCTGCAAGTCCGC 62.146 55.000 6.36 0.00 35.30 5.54
4836 5651 6.662755 AGTCCAGGTTGAGCATTGATTATTA 58.337 36.000 0.00 0.00 0.00 0.98
4982 5821 2.421424 GCACTTCTAAACAGGCAGGATG 59.579 50.000 0.00 0.00 40.87 3.51
5032 5871 4.885907 AGCACAAGACCATGGATGAAATAG 59.114 41.667 21.47 2.16 0.00 1.73
5040 5879 0.770499 TGGAAGCACAAGACCATGGA 59.230 50.000 21.47 0.00 0.00 3.41
5083 5922 6.240549 ACTGTACTCCCATGGATTCTAAAG 57.759 41.667 15.22 5.04 0.00 1.85
5117 5956 4.095410 CTGACTTCAGCTAGAGACACAG 57.905 50.000 0.00 5.56 37.15 3.66
5127 5966 4.626042 CTGTAAACTGACTGACTTCAGCT 58.374 43.478 6.14 0.00 46.09 4.24
5140 5994 0.238289 CCGTTGCTGGCTGTAAACTG 59.762 55.000 0.00 0.00 0.00 3.16
5152 6006 2.554370 TACAAAAGCTACCCGTTGCT 57.446 45.000 0.00 0.00 43.11 3.91
5189 6043 2.036346 GTCAGGCACAAGGAGCAATTTT 59.964 45.455 0.00 0.00 0.00 1.82
5311 6165 6.899089 TGTAGGAAATGATTCAGCATAAGGA 58.101 36.000 0.00 0.00 37.29 3.36
5352 6206 0.595095 GCTGGGTGCTTTCTTCACAG 59.405 55.000 0.00 0.00 38.95 3.66
5487 6341 1.227380 CGGCTCGGAAATAGCAGCT 60.227 57.895 0.00 0.00 41.93 4.24
5685 6596 3.916392 CTCTTCCAACGCCGCGAGT 62.916 63.158 21.79 4.11 0.00 4.18
5693 6604 4.153117 CCATTCTCACTTTCTCTTCCAACG 59.847 45.833 0.00 0.00 0.00 4.10
5694 6605 5.049129 CACCATTCTCACTTTCTCTTCCAAC 60.049 44.000 0.00 0.00 0.00 3.77
5742 6653 1.751351 CTCACCTCATGGTAGCTCGAA 59.249 52.381 0.00 0.00 46.60 3.71
5763 6674 0.531090 TCAGTTTACACAACGCGGCT 60.531 50.000 12.47 0.00 0.00 5.52
5866 6782 4.403752 TCCTCAGTGGATCATCAACACTAG 59.596 45.833 0.00 0.00 43.09 2.57
5867 6783 4.352893 TCCTCAGTGGATCATCAACACTA 58.647 43.478 0.00 0.00 43.09 2.74
5868 6784 3.176411 TCCTCAGTGGATCATCAACACT 58.824 45.455 0.00 0.00 45.62 3.55
5881 6797 0.387367 CAAGGTCGTCGTCCTCAGTG 60.387 60.000 11.53 3.17 33.76 3.66
5884 6800 1.658114 CACAAGGTCGTCGTCCTCA 59.342 57.895 11.53 0.00 33.76 3.86
5887 6803 2.022129 CAGCACAAGGTCGTCGTCC 61.022 63.158 0.00 0.00 0.00 4.79
5890 6806 1.151777 ACAACAGCACAAGGTCGTCG 61.152 55.000 0.00 0.00 0.00 5.12
5911 6828 0.604780 TGCTGCAGAGCCTGAGAAAC 60.605 55.000 20.43 0.00 45.57 2.78
5912 6829 0.321387 CTGCTGCAGAGCCTGAGAAA 60.321 55.000 24.88 0.00 45.57 2.52
5913 6830 1.295746 CTGCTGCAGAGCCTGAGAA 59.704 57.895 24.88 0.00 45.57 2.87
5980 6897 0.869454 CGCTCCTCGATCTTCTGCAC 60.869 60.000 0.00 0.00 41.67 4.57
6183 7106 1.821061 AACTGTCACCGGCTGGAGAG 61.821 60.000 21.41 7.28 35.37 3.20
6187 7110 0.817634 TCAAAACTGTCACCGGCTGG 60.818 55.000 11.02 11.02 42.84 4.85
6188 7111 0.588252 CTCAAAACTGTCACCGGCTG 59.412 55.000 0.00 0.00 0.00 4.85
6189 7112 0.468226 TCTCAAAACTGTCACCGGCT 59.532 50.000 0.00 0.00 0.00 5.52
6190 7113 1.305201 TTCTCAAAACTGTCACCGGC 58.695 50.000 0.00 0.00 0.00 6.13
6191 7114 2.032924 GGTTTCTCAAAACTGTCACCGG 59.967 50.000 0.00 0.00 43.55 5.28
6192 7115 2.286184 CGGTTTCTCAAAACTGTCACCG 60.286 50.000 0.00 0.00 43.75 4.94
6193 7116 3.334272 CGGTTTCTCAAAACTGTCACC 57.666 47.619 2.41 0.00 43.75 4.02
6225 7148 2.159099 GCAGGTCATGGACTCGATAACA 60.159 50.000 0.00 0.00 32.47 2.41
6227 7150 2.101415 CTGCAGGTCATGGACTCGATAA 59.899 50.000 5.57 0.00 32.47 1.75
6228 7151 1.683385 CTGCAGGTCATGGACTCGATA 59.317 52.381 5.57 0.00 32.47 2.92
6232 7155 1.827969 ACTACTGCAGGTCATGGACTC 59.172 52.381 19.93 0.00 32.47 3.36
6234 7157 1.550524 TCACTACTGCAGGTCATGGAC 59.449 52.381 19.93 0.00 0.00 4.02
6236 7159 2.768253 TTCACTACTGCAGGTCATGG 57.232 50.000 19.93 0.80 0.00 3.66
6237 7160 3.865446 TCATTCACTACTGCAGGTCATG 58.135 45.455 19.93 10.67 0.00 3.07
6238 7161 4.558226 TTCATTCACTACTGCAGGTCAT 57.442 40.909 19.93 0.00 0.00 3.06
6239 7162 4.350368 TTTCATTCACTACTGCAGGTCA 57.650 40.909 19.93 1.42 0.00 4.02
6242 7165 6.108687 TCTACATTTCATTCACTACTGCAGG 58.891 40.000 19.93 3.21 0.00 4.85
6243 7166 7.038048 TCTCTACATTTCATTCACTACTGCAG 58.962 38.462 13.48 13.48 0.00 4.41
6244 7167 6.935167 TCTCTACATTTCATTCACTACTGCA 58.065 36.000 0.00 0.00 0.00 4.41
6246 7169 8.246871 TGTCTCTCTACATTTCATTCACTACTG 58.753 37.037 0.00 0.00 0.00 2.74
6248 7171 8.462811 TCTGTCTCTCTACATTTCATTCACTAC 58.537 37.037 0.00 0.00 0.00 2.73
6251 7174 7.542890 TCTCTGTCTCTCTACATTTCATTCAC 58.457 38.462 0.00 0.00 0.00 3.18
6253 7176 8.465999 TCTTCTCTGTCTCTCTACATTTCATTC 58.534 37.037 0.00 0.00 0.00 2.67
6270 7305 4.629200 GCATCGATCAAAACTCTTCTCTGT 59.371 41.667 0.00 0.00 0.00 3.41
6271 7306 4.033817 GGCATCGATCAAAACTCTTCTCTG 59.966 45.833 0.00 0.00 0.00 3.35
6272 7307 4.081198 AGGCATCGATCAAAACTCTTCTCT 60.081 41.667 0.00 0.00 0.00 3.10
6275 7310 3.486542 GCAGGCATCGATCAAAACTCTTC 60.487 47.826 0.00 0.00 0.00 2.87
6276 7311 2.421424 GCAGGCATCGATCAAAACTCTT 59.579 45.455 0.00 0.00 0.00 2.85
6280 7315 2.634982 TTGCAGGCATCGATCAAAAC 57.365 45.000 0.00 0.00 0.00 2.43
6285 7320 0.317603 GCACATTGCAGGCATCGATC 60.318 55.000 0.00 0.00 44.26 3.69
6286 7321 1.731700 GCACATTGCAGGCATCGAT 59.268 52.632 0.00 0.00 44.26 3.59
6313 7348 7.500559 GGATAGATAGACTTTCTGGCACAATTT 59.499 37.037 5.75 0.00 38.70 1.82
6319 7354 7.855784 TTATGGATAGATAGACTTTCTGGCA 57.144 36.000 5.75 0.00 0.00 4.92
6344 7379 9.434420 CCAGGAAAAAGAAATGCACAATTATTA 57.566 29.630 0.00 0.00 0.00 0.98
6345 7380 7.094677 GCCAGGAAAAAGAAATGCACAATTATT 60.095 33.333 0.00 0.00 0.00 1.40
6349 7384 4.067192 GCCAGGAAAAAGAAATGCACAAT 58.933 39.130 0.00 0.00 0.00 2.71
6350 7385 3.134442 AGCCAGGAAAAAGAAATGCACAA 59.866 39.130 0.00 0.00 0.00 3.33
6353 7388 2.548493 GCAGCCAGGAAAAAGAAATGCA 60.548 45.455 0.00 0.00 0.00 3.96
6385 7420 2.646121 GGCTTTGCTAGTTGCCAGT 58.354 52.632 10.85 0.00 44.34 4.00
6394 7429 1.821216 GTTGCTACCTGGCTTTGCTA 58.179 50.000 0.00 0.00 0.00 3.49
6395 7430 1.237285 CGTTGCTACCTGGCTTTGCT 61.237 55.000 0.00 0.00 0.00 3.91
6396 7431 1.210155 CGTTGCTACCTGGCTTTGC 59.790 57.895 0.00 0.00 0.00 3.68
6398 7433 0.179001 AACCGTTGCTACCTGGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
6399 7434 0.179001 AAACCGTTGCTACCTGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
6401 7436 1.583495 GGAAACCGTTGCTACCTGGC 61.583 60.000 0.00 0.00 0.00 4.85
6402 7437 0.250553 TGGAAACCGTTGCTACCTGG 60.251 55.000 0.00 0.00 0.00 4.45
6403 7438 0.872388 GTGGAAACCGTTGCTACCTG 59.128 55.000 0.00 0.00 0.00 4.00
6404 7439 0.601841 CGTGGAAACCGTTGCTACCT 60.602 55.000 0.34 0.00 0.00 3.08
6405 7440 0.881600 ACGTGGAAACCGTTGCTACC 60.882 55.000 0.34 0.00 34.31 3.18
6596 7708 2.227089 CTCGGTGGGGTTTCGGAGAG 62.227 65.000 0.00 0.00 38.43 3.20
6597 7709 2.203669 TCGGTGGGGTTTCGGAGA 60.204 61.111 0.00 0.00 0.00 3.71
6599 7711 1.409251 TTTCTCGGTGGGGTTTCGGA 61.409 55.000 0.00 0.00 0.00 4.55
6600 7712 0.322187 ATTTCTCGGTGGGGTTTCGG 60.322 55.000 0.00 0.00 0.00 4.30
6601 7713 1.530323 AATTTCTCGGTGGGGTTTCG 58.470 50.000 0.00 0.00 0.00 3.46
6602 7714 2.888414 TGAAATTTCTCGGTGGGGTTTC 59.112 45.455 18.64 0.00 0.00 2.78
6899 8056 2.032528 CAACCTCCTCCGCAAGCA 59.967 61.111 0.00 0.00 0.00 3.91
6902 8059 1.535444 TCCTCAACCTCCTCCGCAA 60.535 57.895 0.00 0.00 0.00 4.85
6903 8060 1.984570 CTCCTCAACCTCCTCCGCA 60.985 63.158 0.00 0.00 0.00 5.69
6913 8070 2.896443 CGCCTCCTCCTCCTCAAC 59.104 66.667 0.00 0.00 0.00 3.18
7040 8206 1.330521 CGAGAGAGAAAGAGAGCGGAG 59.669 57.143 0.00 0.00 0.00 4.63
7041 8207 1.339247 ACGAGAGAGAAAGAGAGCGGA 60.339 52.381 0.00 0.00 0.00 5.54
7042 8208 1.091537 ACGAGAGAGAAAGAGAGCGG 58.908 55.000 0.00 0.00 0.00 5.52
7043 8209 2.911819 AACGAGAGAGAAAGAGAGCG 57.088 50.000 0.00 0.00 0.00 5.03
7044 8210 4.439563 CCCTAAACGAGAGAGAAAGAGAGC 60.440 50.000 0.00 0.00 0.00 4.09
7045 8211 4.097286 CCCCTAAACGAGAGAGAAAGAGAG 59.903 50.000 0.00 0.00 0.00 3.20
7046 8212 4.017808 CCCCTAAACGAGAGAGAAAGAGA 58.982 47.826 0.00 0.00 0.00 3.10
7047 8213 3.429684 GCCCCTAAACGAGAGAGAAAGAG 60.430 52.174 0.00 0.00 0.00 2.85
7048 8214 2.496470 GCCCCTAAACGAGAGAGAAAGA 59.504 50.000 0.00 0.00 0.00 2.52
7049 8215 2.233922 TGCCCCTAAACGAGAGAGAAAG 59.766 50.000 0.00 0.00 0.00 2.62
7050 8216 2.253610 TGCCCCTAAACGAGAGAGAAA 58.746 47.619 0.00 0.00 0.00 2.52
7051 8217 1.933021 TGCCCCTAAACGAGAGAGAA 58.067 50.000 0.00 0.00 0.00 2.87
7063 8229 5.444744 TTAAGCAGTAAGAAATGCCCCTA 57.555 39.130 0.00 0.00 43.60 3.53
7064 8230 2.907458 AAGCAGTAAGAAATGCCCCT 57.093 45.000 0.00 0.00 43.60 4.79
7065 8231 5.351458 CAATTAAGCAGTAAGAAATGCCCC 58.649 41.667 0.00 0.00 43.60 5.80
7066 8232 5.351458 CCAATTAAGCAGTAAGAAATGCCC 58.649 41.667 0.00 0.00 43.60 5.36
7067 8233 4.805719 GCCAATTAAGCAGTAAGAAATGCC 59.194 41.667 0.00 0.00 43.60 4.40
7068 8234 4.805719 GGCCAATTAAGCAGTAAGAAATGC 59.194 41.667 0.00 0.00 42.87 3.56
7070 8236 6.190587 AGAGGCCAATTAAGCAGTAAGAAAT 58.809 36.000 5.01 0.00 0.00 2.17
7072 8238 5.179452 AGAGGCCAATTAAGCAGTAAGAA 57.821 39.130 5.01 0.00 0.00 2.52
7073 8239 4.844349 AGAGGCCAATTAAGCAGTAAGA 57.156 40.909 5.01 0.00 0.00 2.10
7074 8240 5.703130 GGATAGAGGCCAATTAAGCAGTAAG 59.297 44.000 5.01 0.00 0.00 2.34
7075 8241 5.621193 GGATAGAGGCCAATTAAGCAGTAA 58.379 41.667 5.01 0.00 0.00 2.24
7088 8258 1.290639 GTGCTAGCGGATAGAGGCC 59.709 63.158 10.77 0.00 32.76 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.