Multiple sequence alignment - TraesCS5B01G358500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G358500 chr5B 100.000 8246 0 0 949 9194 538300898 538292653 0.000000e+00 15228.0
1 TraesCS5B01G358500 chr5B 100.000 608 0 0 1 608 538301846 538301239 0.000000e+00 1123.0
2 TraesCS5B01G358500 chr5B 87.538 650 70 8 6020 6658 618207330 618206681 0.000000e+00 741.0
3 TraesCS5B01G358500 chr5B 92.120 368 28 1 1 367 497075137 497074770 1.370000e-142 518.0
4 TraesCS5B01G358500 chr5D 95.342 6526 192 45 1232 7700 442102183 442095713 0.000000e+00 10264.0
5 TraesCS5B01G358500 chr5D 91.577 926 44 14 7729 8626 442095719 442094800 0.000000e+00 1247.0
6 TraesCS5B01G358500 chr5D 93.514 370 19 4 8825 9194 442094603 442094239 6.280000e-151 545.0
7 TraesCS5B01G358500 chr5D 94.718 284 6 3 953 1229 442102506 442102225 5.100000e-117 433.0
8 TraesCS5B01G358500 chr5D 97.500 40 0 1 410 449 442103859 442103821 5.960000e-07 67.6
9 TraesCS5B01G358500 chr5A 91.450 2456 113 28 2571 5006 558329171 558326793 0.000000e+00 3282.0
10 TraesCS5B01G358500 chr5A 88.509 1549 101 38 7320 8813 558322653 558321127 0.000000e+00 1803.0
11 TraesCS5B01G358500 chr5A 95.296 659 25 5 6655 7307 558324656 558323998 0.000000e+00 1040.0
12 TraesCS5B01G358500 chr5A 94.581 609 29 4 1959 2566 558329825 558329220 0.000000e+00 939.0
13 TraesCS5B01G358500 chr5A 86.760 642 74 9 6023 6658 71482987 71482351 0.000000e+00 704.0
14 TraesCS5B01G358500 chr5A 90.928 474 25 6 5560 6017 558325109 558324638 1.010000e-173 621.0
15 TraesCS5B01G358500 chr5A 89.518 353 30 5 5155 5502 558325455 558325105 3.050000e-119 440.0
16 TraesCS5B01G358500 chr5A 83.816 414 34 17 952 1336 558331230 558330821 6.790000e-96 363.0
17 TraesCS5B01G358500 chr5A 88.077 260 18 5 8936 9194 558321036 558320789 6.980000e-76 296.0
18 TraesCS5B01G358500 chr5A 88.835 206 13 5 1580 1778 558330763 558330561 2.560000e-60 244.0
19 TraesCS5B01G358500 chr6D 84.108 2624 300 66 1702 4242 123774594 123777183 0.000000e+00 2427.0
20 TraesCS5B01G358500 chr6D 83.224 608 58 24 6655 7242 123779312 123779895 1.370000e-142 518.0
21 TraesCS5B01G358500 chr6D 85.343 423 42 12 5609 6014 123778908 123779327 3.970000e-113 420.0
22 TraesCS5B01G358500 chr6D 88.031 259 12 10 954 1202 123773522 123773771 1.170000e-73 289.0
23 TraesCS5B01G358500 chr6D 83.219 292 27 15 7988 8264 123780816 123781100 1.980000e-61 248.0
24 TraesCS5B01G358500 chr6B 83.786 2615 301 65 1703 4242 218666708 218669274 0.000000e+00 2366.0
25 TraesCS5B01G358500 chr6B 84.704 608 49 22 6655 7241 218671531 218672115 1.340000e-157 568.0
26 TraesCS5B01G358500 chr6B 86.869 297 29 5 5725 6014 218671253 218671546 3.200000e-84 324.0
27 TraesCS5B01G358500 chr6B 86.873 259 14 12 954 1202 218665774 218666022 1.180000e-68 272.0
28 TraesCS5B01G358500 chr6B 82.877 292 28 13 7988 8264 218674239 218674523 9.220000e-60 243.0
29 TraesCS5B01G358500 chr6B 98.039 51 1 0 957 1007 270809597 270809547 1.270000e-13 89.8
30 TraesCS5B01G358500 chr6A 83.708 2627 304 69 1702 4248 157639993 157637411 0.000000e+00 2366.0
31 TraesCS5B01G358500 chr6A 84.401 609 52 25 6655 7242 157635010 157634424 8.060000e-155 558.0
32 TraesCS5B01G358500 chr6A 84.507 426 46 12 5609 6017 157635414 157634992 4.000000e-108 403.0
33 TraesCS5B01G358500 chr6A 86.486 259 15 14 954 1202 157640899 157640651 5.470000e-67 267.0
34 TraesCS5B01G358500 chr6A 82.877 292 28 16 7988 8264 157633512 157633228 9.220000e-60 243.0
35 TraesCS5B01G358500 chr6A 97.959 49 1 0 957 1005 219199646 219199694 1.640000e-12 86.1
36 TraesCS5B01G358500 chr2A 89.498 657 50 9 6020 6658 515951641 515952296 0.000000e+00 813.0
37 TraesCS5B01G358500 chr7B 89.968 618 50 8 6020 6630 522151475 522150863 0.000000e+00 787.0
38 TraesCS5B01G358500 chr7B 91.281 367 29 2 1 367 570357849 570358212 1.780000e-136 497.0
39 TraesCS5B01G358500 chr7B 95.918 49 2 0 957 1005 600455048 600455096 7.650000e-11 80.5
40 TraesCS5B01G358500 chr7D 87.907 645 68 8 6020 6658 319906577 319907217 0.000000e+00 750.0
41 TraesCS5B01G358500 chr3D 87.307 646 69 10 6024 6658 327322757 327323400 0.000000e+00 726.0
42 TraesCS5B01G358500 chr1B 85.540 657 77 9 6016 6657 572898157 572898810 0.000000e+00 671.0
43 TraesCS5B01G358500 chr4A 84.793 651 85 8 6015 6658 546790125 546789482 7.780000e-180 641.0
44 TraesCS5B01G358500 chr4A 95.918 49 2 0 957 1005 566753852 566753900 7.650000e-11 80.5
45 TraesCS5B01G358500 chr2B 92.954 369 24 2 1 367 82079848 82080216 3.780000e-148 536.0
46 TraesCS5B01G358500 chr1D 92.412 369 21 6 1 366 223442024 223441660 3.800000e-143 520.0
47 TraesCS5B01G358500 chr1D 91.057 369 30 3 1 367 450517464 450517097 6.410000e-136 496.0
48 TraesCS5B01G358500 chr1D 97.959 49 1 0 957 1005 446820927 446820975 1.640000e-12 86.1
49 TraesCS5B01G358500 chr3B 92.350 366 23 1 1 366 44580749 44581109 4.920000e-142 516.0
50 TraesCS5B01G358500 chr3B 91.599 369 29 2 1 367 90385666 90386034 8.240000e-140 508.0
51 TraesCS5B01G358500 chr2D 91.576 368 29 2 1 367 565306372 565306738 2.960000e-139 507.0
52 TraesCS5B01G358500 chr2D 90.786 369 31 3 1 367 512096917 512097284 2.980000e-134 490.0
53 TraesCS5B01G358500 chr3A 90.441 136 10 3 6015 6148 685358884 685358750 9.490000e-40 176.0
54 TraesCS5B01G358500 chrUn 96.078 51 2 0 957 1007 77224300 77224350 5.920000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G358500 chr5B 538292653 538301846 9193 True 8175.500000 15228 100.000000 1 9194 2 chr5B.!!$R3 9193
1 TraesCS5B01G358500 chr5B 618206681 618207330 649 True 741.000000 741 87.538000 6020 6658 1 chr5B.!!$R2 638
2 TraesCS5B01G358500 chr5D 442094239 442103859 9620 True 2511.320000 10264 94.530200 410 9194 5 chr5D.!!$R1 8784
3 TraesCS5B01G358500 chr5A 558320789 558331230 10441 True 1003.111111 3282 90.112222 952 9194 9 chr5A.!!$R2 8242
4 TraesCS5B01G358500 chr5A 71482351 71482987 636 True 704.000000 704 86.760000 6023 6658 1 chr5A.!!$R1 635
5 TraesCS5B01G358500 chr6D 123773522 123781100 7578 False 780.400000 2427 84.785000 954 8264 5 chr6D.!!$F1 7310
6 TraesCS5B01G358500 chr6B 218665774 218674523 8749 False 754.600000 2366 85.021800 954 8264 5 chr6B.!!$F1 7310
7 TraesCS5B01G358500 chr6A 157633228 157640899 7671 True 767.400000 2366 84.395800 954 8264 5 chr6A.!!$R1 7310
8 TraesCS5B01G358500 chr2A 515951641 515952296 655 False 813.000000 813 89.498000 6020 6658 1 chr2A.!!$F1 638
9 TraesCS5B01G358500 chr7B 522150863 522151475 612 True 787.000000 787 89.968000 6020 6630 1 chr7B.!!$R1 610
10 TraesCS5B01G358500 chr7D 319906577 319907217 640 False 750.000000 750 87.907000 6020 6658 1 chr7D.!!$F1 638
11 TraesCS5B01G358500 chr3D 327322757 327323400 643 False 726.000000 726 87.307000 6024 6658 1 chr3D.!!$F1 634
12 TraesCS5B01G358500 chr1B 572898157 572898810 653 False 671.000000 671 85.540000 6016 6657 1 chr1B.!!$F1 641
13 TraesCS5B01G358500 chr4A 546789482 546790125 643 True 641.000000 641 84.793000 6015 6658 1 chr4A.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 382 0.039618 ATTTGGTGTTGCGAGGGGAT 59.960 50.000 0.00 0.00 0.00 3.85 F
401 402 0.100861 GACCGAAGAACGAGCTAGGG 59.899 60.000 0.00 0.00 45.77 3.53 F
452 453 0.400594 CGAAGAGGGGTTGGGAACTT 59.599 55.000 0.00 0.00 0.00 2.66 F
454 455 0.482887 AAGAGGGGTTGGGAACTTGG 59.517 55.000 0.00 0.00 0.00 3.61 F
571 1652 0.819582 CCCAGCATCGGCAGAAAAAT 59.180 50.000 0.00 0.00 44.61 1.82 F
1541 2854 1.272807 GGACCTGCACCTACCTGTTA 58.727 55.000 0.00 0.00 0.00 2.41 F
2421 4544 1.859080 GGTCCGTCGATAATCAGCAAC 59.141 52.381 0.00 0.00 0.00 4.17 F
3859 6086 2.094182 GTCTGTGGCAACTTCTCCGATA 60.094 50.000 0.00 0.00 37.61 2.92 F
4304 6856 0.613777 CAAGGTGGTCTGTACCCCTC 59.386 60.000 5.42 0.00 46.16 4.30 F
4965 7873 1.027357 CTTGGACCATACTGGCATGC 58.973 55.000 9.90 9.90 42.67 4.06 F
6345 10728 0.399806 AATTGGTGCCACCCCAACTT 60.400 50.000 12.25 0.00 44.36 2.66 F
6989 11382 0.108992 AATTCCAGTGCTGCATTGCG 60.109 50.000 18.46 12.16 35.36 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 2546 0.555769 TTGAACCAGAACCCAAGGCT 59.444 50.000 0.00 0.00 0.00 4.58 R
1541 2854 0.602905 GCACACCCTACGCTCAAACT 60.603 55.000 0.00 0.00 0.00 2.66 R
1874 3418 0.951558 GGGCAAGCAGAAGAAAACGA 59.048 50.000 0.00 0.00 0.00 3.85 R
2421 4544 2.148916 TTGTAGTTCAGCTGGTGTCG 57.851 50.000 15.13 0.00 0.00 4.35 R
2524 4654 3.555956 ACAACGATCATTTCTCGCATACC 59.444 43.478 0.00 0.00 39.71 2.73 R
3371 5563 3.260884 ACGCTCAAGGAATCAAGAAGGTA 59.739 43.478 0.00 0.00 0.00 3.08 R
4139 6371 0.313987 GGAGTTTCAACAAAGGGGCG 59.686 55.000 0.00 0.00 0.00 6.13 R
5568 9717 0.464193 ATGTGGCACATGCGCAGATA 60.464 50.000 30.96 0.36 44.52 1.98 R
6050 10414 1.139256 GCTCTAGCCTACCCCAACTTC 59.861 57.143 0.00 0.00 34.31 3.01 R
6619 11007 2.219080 TGGGATCAATGCTGCAGAAA 57.781 45.000 20.43 4.69 0.00 2.52 R
7672 14837 0.179073 CTGCTAACGGGATCCACTGG 60.179 60.000 15.23 1.81 0.00 4.00 R
8644 15868 0.033504 AGCGTTGACGTGAATGGAGT 59.966 50.000 9.05 0.00 42.22 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.508845 TTTGGGAGAGGTTTTGAGAGG 57.491 47.619 0.00 0.00 0.00 3.69
22 23 1.362224 TGGGAGAGGTTTTGAGAGGG 58.638 55.000 0.00 0.00 0.00 4.30
23 24 1.132527 TGGGAGAGGTTTTGAGAGGGA 60.133 52.381 0.00 0.00 0.00 4.20
24 25 1.557371 GGGAGAGGTTTTGAGAGGGAG 59.443 57.143 0.00 0.00 0.00 4.30
25 26 2.541466 GGAGAGGTTTTGAGAGGGAGA 58.459 52.381 0.00 0.00 0.00 3.71
26 27 2.499693 GGAGAGGTTTTGAGAGGGAGAG 59.500 54.545 0.00 0.00 0.00 3.20
27 28 3.436243 GAGAGGTTTTGAGAGGGAGAGA 58.564 50.000 0.00 0.00 0.00 3.10
28 29 3.440127 AGAGGTTTTGAGAGGGAGAGAG 58.560 50.000 0.00 0.00 0.00 3.20
29 30 3.076785 AGAGGTTTTGAGAGGGAGAGAGA 59.923 47.826 0.00 0.00 0.00 3.10
30 31 3.440127 AGGTTTTGAGAGGGAGAGAGAG 58.560 50.000 0.00 0.00 0.00 3.20
31 32 3.169908 GGTTTTGAGAGGGAGAGAGAGT 58.830 50.000 0.00 0.00 0.00 3.24
32 33 3.056179 GGTTTTGAGAGGGAGAGAGAGTG 60.056 52.174 0.00 0.00 0.00 3.51
33 34 2.523325 TTGAGAGGGAGAGAGAGTGG 57.477 55.000 0.00 0.00 0.00 4.00
34 35 0.628522 TGAGAGGGAGAGAGAGTGGG 59.371 60.000 0.00 0.00 0.00 4.61
35 36 0.923358 GAGAGGGAGAGAGAGTGGGA 59.077 60.000 0.00 0.00 0.00 4.37
36 37 0.926293 AGAGGGAGAGAGAGTGGGAG 59.074 60.000 0.00 0.00 0.00 4.30
37 38 0.923358 GAGGGAGAGAGAGTGGGAGA 59.077 60.000 0.00 0.00 0.00 3.71
38 39 0.926293 AGGGAGAGAGAGTGGGAGAG 59.074 60.000 0.00 0.00 0.00 3.20
39 40 0.106217 GGGAGAGAGAGTGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
40 41 0.106217 GGAGAGAGAGTGGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
41 42 0.106217 GAGAGAGAGTGGGAGAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
42 43 1.075600 GAGAGAGTGGGAGAGGGGG 60.076 68.421 0.00 0.00 0.00 5.40
43 44 2.766229 GAGAGTGGGAGAGGGGGC 60.766 72.222 0.00 0.00 0.00 5.80
44 45 3.615811 AGAGTGGGAGAGGGGGCA 61.616 66.667 0.00 0.00 0.00 5.36
45 46 2.610859 GAGTGGGAGAGGGGGCAA 60.611 66.667 0.00 0.00 0.00 4.52
46 47 2.121506 AGTGGGAGAGGGGGCAAA 60.122 61.111 0.00 0.00 0.00 3.68
47 48 2.203549 GAGTGGGAGAGGGGGCAAAG 62.204 65.000 0.00 0.00 0.00 2.77
48 49 3.661648 TGGGAGAGGGGGCAAAGC 61.662 66.667 0.00 0.00 0.00 3.51
49 50 3.342477 GGGAGAGGGGGCAAAGCT 61.342 66.667 0.00 0.00 0.00 3.74
50 51 2.766660 GGAGAGGGGGCAAAGCTT 59.233 61.111 0.00 0.00 0.00 3.74
51 52 1.680314 GGAGAGGGGGCAAAGCTTG 60.680 63.158 0.00 0.00 0.00 4.01
52 53 1.680314 GAGAGGGGGCAAAGCTTGG 60.680 63.158 0.00 0.00 0.00 3.61
53 54 2.681421 GAGGGGGCAAAGCTTGGG 60.681 66.667 0.00 0.00 0.00 4.12
54 55 3.521452 AGGGGGCAAAGCTTGGGT 61.521 61.111 0.00 0.00 0.00 4.51
55 56 2.526624 GGGGGCAAAGCTTGGGTT 60.527 61.111 0.00 0.00 0.00 4.11
56 57 2.743060 GGGGCAAAGCTTGGGTTG 59.257 61.111 0.00 0.00 0.00 3.77
57 58 2.743060 GGGCAAAGCTTGGGTTGG 59.257 61.111 0.00 0.00 0.00 3.77
58 59 2.743060 GGCAAAGCTTGGGTTGGG 59.257 61.111 0.00 0.00 0.00 4.12
59 60 2.743060 GCAAAGCTTGGGTTGGGG 59.257 61.111 0.00 0.00 0.00 4.96
60 61 2.140138 GCAAAGCTTGGGTTGGGGT 61.140 57.895 0.00 0.00 0.00 4.95
61 62 1.747774 CAAAGCTTGGGTTGGGGTG 59.252 57.895 0.00 0.00 0.00 4.61
62 63 1.048160 CAAAGCTTGGGTTGGGGTGT 61.048 55.000 0.00 0.00 0.00 4.16
63 64 1.048160 AAAGCTTGGGTTGGGGTGTG 61.048 55.000 0.00 0.00 0.00 3.82
64 65 2.123468 GCTTGGGTTGGGGTGTGT 60.123 61.111 0.00 0.00 0.00 3.72
65 66 2.498056 GCTTGGGTTGGGGTGTGTG 61.498 63.158 0.00 0.00 0.00 3.82
66 67 1.832167 CTTGGGTTGGGGTGTGTGG 60.832 63.158 0.00 0.00 0.00 4.17
67 68 3.381509 TTGGGTTGGGGTGTGTGGG 62.382 63.158 0.00 0.00 0.00 4.61
68 69 4.614036 GGGTTGGGGTGTGTGGGG 62.614 72.222 0.00 0.00 0.00 4.96
69 70 3.828023 GGTTGGGGTGTGTGGGGT 61.828 66.667 0.00 0.00 0.00 4.95
70 71 2.520741 GTTGGGGTGTGTGGGGTG 60.521 66.667 0.00 0.00 0.00 4.61
71 72 3.826822 TTGGGGTGTGTGGGGTGG 61.827 66.667 0.00 0.00 0.00 4.61
111 112 3.669354 CCGAGTGGCTGGATAAGTC 57.331 57.895 0.00 0.00 0.00 3.01
112 113 0.824109 CCGAGTGGCTGGATAAGTCA 59.176 55.000 0.00 0.00 38.51 3.41
117 118 2.768253 TGGCTGGATAAGTCACAGTG 57.232 50.000 0.00 0.00 34.88 3.66
118 119 1.339055 TGGCTGGATAAGTCACAGTGC 60.339 52.381 0.00 0.00 34.88 4.40
119 120 1.339055 GGCTGGATAAGTCACAGTGCA 60.339 52.381 0.00 0.00 34.79 4.57
120 121 2.426522 GCTGGATAAGTCACAGTGCAA 58.573 47.619 0.00 0.00 34.79 4.08
121 122 2.160417 GCTGGATAAGTCACAGTGCAAC 59.840 50.000 0.00 0.00 34.79 4.17
122 123 2.412870 TGGATAAGTCACAGTGCAACG 58.587 47.619 0.00 0.00 45.86 4.10
123 124 1.128692 GGATAAGTCACAGTGCAACGC 59.871 52.381 0.00 0.00 45.86 4.84
124 125 1.128692 GATAAGTCACAGTGCAACGCC 59.871 52.381 0.00 0.00 45.86 5.68
125 126 0.882927 TAAGTCACAGTGCAACGCCC 60.883 55.000 0.00 0.00 45.86 6.13
126 127 4.012895 GTCACAGTGCAACGCCCG 62.013 66.667 0.00 0.00 45.86 6.13
127 128 4.228567 TCACAGTGCAACGCCCGA 62.229 61.111 0.00 0.00 45.86 5.14
128 129 3.716006 CACAGTGCAACGCCCGAG 61.716 66.667 0.00 0.00 45.86 4.63
147 148 2.876955 GCCATGCGCTGCACTTTA 59.123 55.556 9.73 0.00 43.04 1.85
148 149 1.212490 GCCATGCGCTGCACTTTAA 59.788 52.632 9.73 0.00 43.04 1.52
149 150 0.388391 GCCATGCGCTGCACTTTAAA 60.388 50.000 9.73 0.00 43.04 1.52
150 151 1.736696 GCCATGCGCTGCACTTTAAAT 60.737 47.619 9.73 0.00 43.04 1.40
151 152 1.921887 CCATGCGCTGCACTTTAAATG 59.078 47.619 9.73 0.00 43.04 2.32
152 153 2.598589 CATGCGCTGCACTTTAAATGT 58.401 42.857 9.73 0.00 43.04 2.71
153 154 2.049077 TGCGCTGCACTTTAAATGTG 57.951 45.000 9.73 11.27 38.36 3.21
154 155 1.336440 TGCGCTGCACTTTAAATGTGT 59.664 42.857 9.73 0.00 37.70 3.72
155 156 1.715519 GCGCTGCACTTTAAATGTGTG 59.284 47.619 0.00 9.54 37.70 3.82
156 157 2.318578 CGCTGCACTTTAAATGTGTGG 58.681 47.619 14.90 10.75 37.70 4.17
157 158 2.061028 GCTGCACTTTAAATGTGTGGC 58.939 47.619 14.90 14.49 37.70 5.01
158 159 2.318578 CTGCACTTTAAATGTGTGGCG 58.681 47.619 14.90 0.00 37.70 5.69
159 160 1.059942 GCACTTTAAATGTGTGGCGC 58.940 50.000 0.00 0.00 37.70 6.53
160 161 1.696988 CACTTTAAATGTGTGGCGCC 58.303 50.000 22.73 22.73 0.00 6.53
161 162 1.269448 CACTTTAAATGTGTGGCGCCT 59.731 47.619 29.70 7.80 0.00 5.52
162 163 2.486203 CACTTTAAATGTGTGGCGCCTA 59.514 45.455 29.70 14.39 0.00 3.93
163 164 2.747446 ACTTTAAATGTGTGGCGCCTAG 59.253 45.455 29.70 10.79 0.00 3.02
176 177 2.202987 CCTAGCTTGGAGGCGCTG 60.203 66.667 8.73 0.00 37.05 5.18
177 178 2.894387 CTAGCTTGGAGGCGCTGC 60.894 66.667 7.64 0.00 37.05 5.25
178 179 3.670637 CTAGCTTGGAGGCGCTGCA 62.671 63.158 7.64 1.60 37.05 4.41
179 180 3.958147 TAGCTTGGAGGCGCTGCAC 62.958 63.158 7.64 0.00 37.05 4.57
181 182 2.265739 CTTGGAGGCGCTGCACTA 59.734 61.111 7.64 0.00 30.08 2.74
182 183 2.047274 TTGGAGGCGCTGCACTAC 60.047 61.111 7.64 0.00 30.08 2.73
183 184 2.513026 CTTGGAGGCGCTGCACTACT 62.513 60.000 7.64 0.00 30.08 2.57
184 185 2.510238 GGAGGCGCTGCACTACTG 60.510 66.667 7.64 0.00 0.00 2.74
185 186 2.510238 GAGGCGCTGCACTACTGG 60.510 66.667 7.64 0.00 0.00 4.00
186 187 4.087892 AGGCGCTGCACTACTGGG 62.088 66.667 7.64 0.00 0.00 4.45
187 188 4.394712 GGCGCTGCACTACTGGGT 62.395 66.667 7.64 0.00 33.37 4.51
188 189 3.121030 GCGCTGCACTACTGGGTG 61.121 66.667 0.00 0.00 39.91 4.61
194 195 4.778143 CACTACTGGGTGCGGGCC 62.778 72.222 0.00 0.00 0.00 5.80
217 218 4.314440 GCTGCCACGGTGGACAGA 62.314 66.667 35.00 17.24 40.96 3.41
218 219 2.665000 CTGCCACGGTGGACAGAT 59.335 61.111 30.87 0.00 40.96 2.90
219 220 1.742880 CTGCCACGGTGGACAGATG 60.743 63.158 30.87 15.64 40.96 2.90
220 221 2.347490 GCCACGGTGGACAGATGT 59.653 61.111 30.65 0.00 40.96 3.06
221 222 2.034879 GCCACGGTGGACAGATGTG 61.035 63.158 30.65 1.03 40.96 3.21
222 223 2.034879 CCACGGTGGACAGATGTGC 61.035 63.158 22.77 0.00 40.96 4.57
223 224 1.301637 CACGGTGGACAGATGTGCA 60.302 57.895 2.77 2.77 44.12 4.57
235 236 2.515398 TGTGCAACACCCCAGAGG 59.485 61.111 0.00 0.00 45.67 3.69
244 245 3.854669 CCCCAGAGGTAGGCGCTG 61.855 72.222 7.64 0.00 0.00 5.18
245 246 4.537433 CCCAGAGGTAGGCGCTGC 62.537 72.222 7.64 0.00 0.00 5.25
246 247 3.774528 CCAGAGGTAGGCGCTGCA 61.775 66.667 7.64 0.00 0.00 4.41
247 248 2.510238 CAGAGGTAGGCGCTGCAC 60.510 66.667 7.64 2.38 0.00 4.57
248 249 3.775654 AGAGGTAGGCGCTGCACC 61.776 66.667 7.64 12.37 0.00 5.01
251 252 4.137872 GGTAGGCGCTGCACCGTA 62.138 66.667 7.64 0.00 0.00 4.02
252 253 2.582498 GTAGGCGCTGCACCGTAG 60.582 66.667 7.64 0.00 0.00 3.51
285 286 2.511403 TGGCGGGTGCTACACAAA 59.489 55.556 0.00 0.00 42.25 2.83
286 287 1.152943 TGGCGGGTGCTACACAAAA 60.153 52.632 0.00 0.00 42.25 2.44
287 288 0.752009 TGGCGGGTGCTACACAAAAA 60.752 50.000 0.00 0.00 42.25 1.94
288 289 0.601057 GGCGGGTGCTACACAAAAAT 59.399 50.000 0.00 0.00 42.25 1.82
289 290 1.668628 GGCGGGTGCTACACAAAAATG 60.669 52.381 0.00 0.00 42.25 2.32
290 291 1.000717 GCGGGTGCTACACAAAAATGT 60.001 47.619 0.00 0.00 35.86 2.71
291 292 2.920647 GCGGGTGCTACACAAAAATGTC 60.921 50.000 0.00 0.00 35.86 3.06
292 293 2.292016 CGGGTGCTACACAAAAATGTCA 59.708 45.455 0.00 0.00 35.86 3.58
293 294 3.057596 CGGGTGCTACACAAAAATGTCAT 60.058 43.478 0.00 0.00 35.86 3.06
294 295 4.485163 GGGTGCTACACAAAAATGTCATC 58.515 43.478 0.00 0.00 35.86 2.92
295 296 4.158384 GGTGCTACACAAAAATGTCATCG 58.842 43.478 0.00 0.00 35.86 3.84
296 297 4.158384 GTGCTACACAAAAATGTCATCGG 58.842 43.478 0.00 0.00 34.08 4.18
297 298 3.171277 GCTACACAAAAATGTCATCGGC 58.829 45.455 0.00 0.00 33.85 5.54
298 299 2.330231 ACACAAAAATGTCATCGGCG 57.670 45.000 0.00 0.00 0.00 6.46
299 300 1.606668 ACACAAAAATGTCATCGGCGT 59.393 42.857 6.85 0.00 0.00 5.68
300 301 1.978097 CACAAAAATGTCATCGGCGTG 59.022 47.619 6.85 4.88 0.00 5.34
301 302 1.876799 ACAAAAATGTCATCGGCGTGA 59.123 42.857 6.85 7.46 0.00 4.35
302 303 2.292016 ACAAAAATGTCATCGGCGTGAA 59.708 40.909 6.85 2.44 0.00 3.18
303 304 3.243234 ACAAAAATGTCATCGGCGTGAAA 60.243 39.130 6.85 5.79 0.00 2.69
304 305 3.848272 AAAATGTCATCGGCGTGAAAT 57.152 38.095 6.85 8.00 0.00 2.17
305 306 4.955925 AAAATGTCATCGGCGTGAAATA 57.044 36.364 6.85 1.44 0.00 1.40
306 307 4.536364 AAATGTCATCGGCGTGAAATAG 57.464 40.909 6.85 0.00 0.00 1.73
307 308 2.665649 TGTCATCGGCGTGAAATAGT 57.334 45.000 6.85 0.00 0.00 2.12
308 309 2.967362 TGTCATCGGCGTGAAATAGTT 58.033 42.857 6.85 0.00 0.00 2.24
309 310 3.331150 TGTCATCGGCGTGAAATAGTTT 58.669 40.909 6.85 0.00 0.00 2.66
310 311 3.369756 TGTCATCGGCGTGAAATAGTTTC 59.630 43.478 6.85 0.00 40.08 2.78
311 312 3.369756 GTCATCGGCGTGAAATAGTTTCA 59.630 43.478 6.85 1.24 46.68 2.69
328 329 9.436957 AATAGTTTCACGAGTAATTCATTCTGT 57.563 29.630 0.00 0.00 0.00 3.41
329 330 7.121974 AGTTTCACGAGTAATTCATTCTGTG 57.878 36.000 0.00 0.00 0.00 3.66
330 331 6.929049 AGTTTCACGAGTAATTCATTCTGTGA 59.071 34.615 0.00 0.00 33.68 3.58
331 332 7.604164 AGTTTCACGAGTAATTCATTCTGTGAT 59.396 33.333 0.00 0.00 36.54 3.06
332 333 7.905604 TTCACGAGTAATTCATTCTGTGATT 57.094 32.000 0.00 0.00 36.54 2.57
333 334 7.905604 TCACGAGTAATTCATTCTGTGATTT 57.094 32.000 0.00 0.00 36.54 2.17
334 335 7.742151 TCACGAGTAATTCATTCTGTGATTTG 58.258 34.615 0.00 0.00 36.54 2.32
335 336 7.602265 TCACGAGTAATTCATTCTGTGATTTGA 59.398 33.333 0.00 0.00 36.54 2.69
336 337 8.393366 CACGAGTAATTCATTCTGTGATTTGAT 58.607 33.333 0.00 0.00 36.54 2.57
337 338 8.950210 ACGAGTAATTCATTCTGTGATTTGATT 58.050 29.630 0.00 0.00 36.54 2.57
338 339 9.778993 CGAGTAATTCATTCTGTGATTTGATTT 57.221 29.630 0.00 0.00 36.54 2.17
340 341 9.778993 AGTAATTCATTCTGTGATTTGATTTCG 57.221 29.630 0.00 0.00 36.54 3.46
341 342 9.559958 GTAATTCATTCTGTGATTTGATTTCGT 57.440 29.630 0.00 0.00 36.54 3.85
342 343 8.679288 AATTCATTCTGTGATTTGATTTCGTC 57.321 30.769 0.00 0.00 36.54 4.20
343 344 6.182039 TCATTCTGTGATTTGATTTCGTCC 57.818 37.500 0.00 0.00 0.00 4.79
344 345 5.123820 TCATTCTGTGATTTGATTTCGTCCC 59.876 40.000 0.00 0.00 0.00 4.46
345 346 3.000041 TCTGTGATTTGATTTCGTCCCG 59.000 45.455 0.00 0.00 0.00 5.14
346 347 3.000041 CTGTGATTTGATTTCGTCCCGA 59.000 45.455 0.00 0.00 0.00 5.14
347 348 3.000041 TGTGATTTGATTTCGTCCCGAG 59.000 45.455 0.00 0.00 37.14 4.63
348 349 2.351726 GTGATTTGATTTCGTCCCGAGG 59.648 50.000 0.00 0.00 37.14 4.63
349 350 2.027561 TGATTTGATTTCGTCCCGAGGT 60.028 45.455 0.00 0.00 37.14 3.85
350 351 2.088950 TTTGATTTCGTCCCGAGGTC 57.911 50.000 0.00 0.00 37.14 3.85
351 352 0.970640 TTGATTTCGTCCCGAGGTCA 59.029 50.000 0.00 0.00 37.14 4.02
352 353 0.970640 TGATTTCGTCCCGAGGTCAA 59.029 50.000 0.00 0.00 37.14 3.18
353 354 1.345089 TGATTTCGTCCCGAGGTCAAA 59.655 47.619 0.00 0.00 37.14 2.69
354 355 2.224329 TGATTTCGTCCCGAGGTCAAAA 60.224 45.455 0.00 0.00 37.14 2.44
355 356 2.554370 TTTCGTCCCGAGGTCAAAAT 57.446 45.000 0.00 0.00 37.14 1.82
356 357 2.554370 TTCGTCCCGAGGTCAAAATT 57.446 45.000 0.00 0.00 37.14 1.82
357 358 1.803334 TCGTCCCGAGGTCAAAATTG 58.197 50.000 0.00 0.00 0.00 2.32
358 359 1.071071 TCGTCCCGAGGTCAAAATTGT 59.929 47.619 0.00 0.00 0.00 2.71
359 360 1.877443 CGTCCCGAGGTCAAAATTGTT 59.123 47.619 0.00 0.00 0.00 2.83
360 361 3.068560 CGTCCCGAGGTCAAAATTGTTA 58.931 45.455 0.00 0.00 0.00 2.41
361 362 3.499157 CGTCCCGAGGTCAAAATTGTTAA 59.501 43.478 0.00 0.00 0.00 2.01
362 363 4.023878 CGTCCCGAGGTCAAAATTGTTAAA 60.024 41.667 0.00 0.00 0.00 1.52
363 364 5.335348 CGTCCCGAGGTCAAAATTGTTAAAT 60.335 40.000 0.00 0.00 0.00 1.40
364 365 6.452242 GTCCCGAGGTCAAAATTGTTAAATT 58.548 36.000 0.00 0.00 37.61 1.82
365 366 6.926826 GTCCCGAGGTCAAAATTGTTAAATTT 59.073 34.615 0.00 0.00 45.81 1.82
366 367 6.926272 TCCCGAGGTCAAAATTGTTAAATTTG 59.074 34.615 0.00 0.00 43.63 2.32
367 368 6.147000 CCCGAGGTCAAAATTGTTAAATTTGG 59.853 38.462 0.00 0.00 43.63 3.28
368 369 6.704050 CCGAGGTCAAAATTGTTAAATTTGGT 59.296 34.615 0.00 0.00 43.63 3.67
369 370 7.307101 CCGAGGTCAAAATTGTTAAATTTGGTG 60.307 37.037 0.00 0.00 43.63 4.17
370 371 7.223777 CGAGGTCAAAATTGTTAAATTTGGTGT 59.776 33.333 0.00 0.00 43.63 4.16
371 372 8.800370 AGGTCAAAATTGTTAAATTTGGTGTT 57.200 26.923 0.00 0.00 43.63 3.32
372 373 8.672815 AGGTCAAAATTGTTAAATTTGGTGTTG 58.327 29.630 0.00 0.00 43.63 3.33
373 374 7.430793 GGTCAAAATTGTTAAATTTGGTGTTGC 59.569 33.333 0.00 0.00 43.63 4.17
374 375 7.163357 GTCAAAATTGTTAAATTTGGTGTTGCG 59.837 33.333 0.00 0.00 43.63 4.85
375 376 6.910536 AAATTGTTAAATTTGGTGTTGCGA 57.089 29.167 0.00 0.00 42.97 5.10
376 377 6.523676 AATTGTTAAATTTGGTGTTGCGAG 57.476 33.333 0.00 0.00 31.76 5.03
377 378 3.971150 TGTTAAATTTGGTGTTGCGAGG 58.029 40.909 0.00 0.00 0.00 4.63
378 379 3.243569 TGTTAAATTTGGTGTTGCGAGGG 60.244 43.478 0.00 0.00 0.00 4.30
379 380 0.678950 AAATTTGGTGTTGCGAGGGG 59.321 50.000 0.00 0.00 0.00 4.79
380 381 0.178975 AATTTGGTGTTGCGAGGGGA 60.179 50.000 0.00 0.00 0.00 4.81
381 382 0.039618 ATTTGGTGTTGCGAGGGGAT 59.960 50.000 0.00 0.00 0.00 3.85
382 383 0.893270 TTTGGTGTTGCGAGGGGATG 60.893 55.000 0.00 0.00 0.00 3.51
383 384 1.773856 TTGGTGTTGCGAGGGGATGA 61.774 55.000 0.00 0.00 0.00 2.92
384 385 1.745489 GGTGTTGCGAGGGGATGAC 60.745 63.158 0.00 0.00 0.00 3.06
385 386 1.745489 GTGTTGCGAGGGGATGACC 60.745 63.158 0.00 0.00 39.11 4.02
386 387 2.511600 GTTGCGAGGGGATGACCG 60.512 66.667 0.00 0.00 41.60 4.79
387 388 2.682136 TTGCGAGGGGATGACCGA 60.682 61.111 0.00 0.00 41.60 4.69
388 389 2.287274 TTGCGAGGGGATGACCGAA 61.287 57.895 0.00 0.00 41.60 4.30
389 390 2.107141 GCGAGGGGATGACCGAAG 59.893 66.667 0.00 0.00 41.60 3.79
390 391 2.423898 GCGAGGGGATGACCGAAGA 61.424 63.158 0.00 0.00 41.60 2.87
391 392 1.956629 GCGAGGGGATGACCGAAGAA 61.957 60.000 0.00 0.00 41.60 2.52
392 393 0.179108 CGAGGGGATGACCGAAGAAC 60.179 60.000 0.00 0.00 41.60 3.01
393 394 0.179108 GAGGGGATGACCGAAGAACG 60.179 60.000 0.00 0.00 41.60 3.95
394 395 0.613853 AGGGGATGACCGAAGAACGA 60.614 55.000 0.00 0.00 45.77 3.85
395 396 0.179108 GGGGATGACCGAAGAACGAG 60.179 60.000 0.00 0.00 45.77 4.18
396 397 0.806492 GGGATGACCGAAGAACGAGC 60.806 60.000 0.00 0.00 45.77 5.03
397 398 0.173708 GGATGACCGAAGAACGAGCT 59.826 55.000 0.00 0.00 45.77 4.09
398 399 1.404391 GGATGACCGAAGAACGAGCTA 59.596 52.381 0.00 0.00 45.77 3.32
399 400 2.541999 GGATGACCGAAGAACGAGCTAG 60.542 54.545 0.00 0.00 45.77 3.42
400 401 0.809385 TGACCGAAGAACGAGCTAGG 59.191 55.000 0.00 0.00 45.77 3.02
401 402 0.100861 GACCGAAGAACGAGCTAGGG 59.899 60.000 0.00 0.00 45.77 3.53
402 403 1.321074 ACCGAAGAACGAGCTAGGGG 61.321 60.000 0.00 0.00 45.77 4.79
403 404 1.227002 CGAAGAACGAGCTAGGGGC 60.227 63.158 0.00 0.00 45.77 5.80
449 450 2.754375 GCGAAGAGGGGTTGGGAA 59.246 61.111 0.00 0.00 0.00 3.97
450 451 1.674651 GCGAAGAGGGGTTGGGAAC 60.675 63.158 0.00 0.00 0.00 3.62
451 452 2.067197 CGAAGAGGGGTTGGGAACT 58.933 57.895 0.00 0.00 0.00 3.01
452 453 0.400594 CGAAGAGGGGTTGGGAACTT 59.599 55.000 0.00 0.00 0.00 2.66
454 455 0.482887 AAGAGGGGTTGGGAACTTGG 59.517 55.000 0.00 0.00 0.00 3.61
490 1571 1.630148 CGACTACGCCTGGAAGAAAG 58.370 55.000 0.00 0.00 34.07 2.62
492 1573 2.732597 CGACTACGCCTGGAAGAAAGAG 60.733 54.545 0.00 0.00 34.07 2.85
494 1575 3.100671 ACTACGCCTGGAAGAAAGAGAT 58.899 45.455 0.00 0.00 34.07 2.75
570 1651 1.876497 GCCCAGCATCGGCAGAAAAA 61.876 55.000 4.01 0.00 46.27 1.94
571 1652 0.819582 CCCAGCATCGGCAGAAAAAT 59.180 50.000 0.00 0.00 44.61 1.82
572 1653 2.023673 CCCAGCATCGGCAGAAAAATA 58.976 47.619 0.00 0.00 44.61 1.40
573 1654 2.033801 CCCAGCATCGGCAGAAAAATAG 59.966 50.000 0.00 0.00 44.61 1.73
1090 2195 2.813908 CGCGGCCGCTAACTTCTT 60.814 61.111 43.60 0.00 39.32 2.52
1153 2258 3.315142 CTACAGCTGCAAGGCCGGA 62.315 63.158 15.27 0.00 0.00 5.14
1229 2338 2.285220 CGCCCTCATACTGTTCGAATTG 59.715 50.000 0.00 0.00 0.00 2.32
1330 2505 2.296752 TGTGCTGGTGATGGACAAATTG 59.703 45.455 0.00 0.00 33.03 2.32
1360 2546 6.160684 TCATTCCTAAGTTTTCGAATCGACA 58.839 36.000 4.25 0.00 34.89 4.35
1396 2582 2.580962 TCAAACATGGTGTGCTTGCTA 58.419 42.857 0.00 0.00 34.61 3.49
1397 2583 2.293122 TCAAACATGGTGTGCTTGCTAC 59.707 45.455 0.00 0.00 34.61 3.58
1406 2594 3.390135 GTGTGCTTGCTACTGTCAGTTA 58.610 45.455 11.54 0.00 0.00 2.24
1514 2827 7.815641 TGACTTCAAGCATCGAATCAATAAAA 58.184 30.769 0.00 0.00 0.00 1.52
1541 2854 1.272807 GGACCTGCACCTACCTGTTA 58.727 55.000 0.00 0.00 0.00 2.41
1637 2960 5.209818 TGCCGCTAGCTATTAGTGTTATT 57.790 39.130 13.93 0.00 44.23 1.40
1638 2961 6.335471 TGCCGCTAGCTATTAGTGTTATTA 57.665 37.500 13.93 0.00 44.23 0.98
1639 2962 6.751157 TGCCGCTAGCTATTAGTGTTATTAA 58.249 36.000 13.93 0.00 44.23 1.40
1640 2963 7.383687 TGCCGCTAGCTATTAGTGTTATTAAT 58.616 34.615 13.93 0.00 44.23 1.40
1745 3281 6.398234 TTTTTGCAGTCTGGCAGTAAATTA 57.602 33.333 15.27 0.00 45.88 1.40
1874 3418 2.008242 TGCCATGTTTGGGTTTAGCT 57.992 45.000 0.00 0.00 43.84 3.32
1938 3482 5.221541 TGTTGTTCTTTTGTTGGTTCAAGGT 60.222 36.000 0.00 0.00 0.00 3.50
2421 4544 1.859080 GGTCCGTCGATAATCAGCAAC 59.141 52.381 0.00 0.00 0.00 4.17
2513 4643 7.201556 CGCTGAGTATACTGATTGTGAAATTGT 60.202 37.037 10.90 0.00 0.00 2.71
2524 4654 8.417780 TGATTGTGAAATTGTTTAGTTTGTGG 57.582 30.769 0.00 0.00 0.00 4.17
2906 5085 2.158827 TGAGAAGTACAAAGTGCCAGCA 60.159 45.455 0.00 0.00 0.00 4.41
3198 5378 7.119262 TGCTTGGTTCTTAATTTGCTACTCTAC 59.881 37.037 0.00 0.00 0.00 2.59
3311 5503 6.803154 AGTTGGTTCTAACTGTTAATGCTC 57.197 37.500 1.46 0.00 39.33 4.26
3371 5563 2.922740 TCTGGTTTCGTGCTTAGGTT 57.077 45.000 0.00 0.00 0.00 3.50
3379 5571 4.612264 TTCGTGCTTAGGTTACCTTCTT 57.388 40.909 10.01 0.00 34.61 2.52
3435 5627 8.737168 TGAAACTTATCATATGAAGACTTGGG 57.263 34.615 9.99 0.00 0.00 4.12
3443 5635 3.625649 ATGAAGACTTGGGAGAAGCTC 57.374 47.619 0.00 0.00 0.00 4.09
3619 5813 7.822161 TGCAAAAGGTATGTTATGCTATCAT 57.178 32.000 0.00 0.00 34.97 2.45
3637 5831 8.219868 TGCTATCATTATCCTGATTTTCAAGGA 58.780 33.333 0.00 0.00 37.13 3.36
3670 5891 6.980397 AGTGATTTGCCTGTTTTTACTTTCTG 59.020 34.615 0.00 0.00 0.00 3.02
3786 6009 4.710423 TTATTATCGCTTTTGCCTTGCA 57.290 36.364 0.00 0.00 43.93 4.08
3859 6086 2.094182 GTCTGTGGCAACTTCTCCGATA 60.094 50.000 0.00 0.00 37.61 2.92
4139 6371 2.350522 ACTCTTCACACCATTCGATGC 58.649 47.619 0.00 0.00 0.00 3.91
4163 6395 3.450817 CCCCTTTGTTGAAACTCCTTGTT 59.549 43.478 0.00 0.00 41.29 2.83
4205 6437 9.295825 TGAACTGTTGGTATAGTTGAAATCAAT 57.704 29.630 0.00 0.00 36.05 2.57
4264 6816 8.783660 ATACCTATCATCCTTGTCTTCTAACA 57.216 34.615 0.00 0.00 0.00 2.41
4300 6852 3.233355 CTGCAAGGTGGTCTGTACC 57.767 57.895 0.00 0.00 46.98 3.34
4304 6856 0.613777 CAAGGTGGTCTGTACCCCTC 59.386 60.000 5.42 0.00 46.16 4.30
4450 7010 4.201561 CGATATTCACAGATACATGCGCAG 60.202 45.833 18.32 10.85 0.00 5.18
4457 7017 2.031870 AGATACATGCGCAGTAGGTGA 58.968 47.619 18.32 0.00 37.85 4.02
4462 7022 2.283298 CATGCGCAGTAGGTGATTCTT 58.717 47.619 18.32 0.00 0.00 2.52
4483 7044 5.127194 TCTTTGACTATATATAGCTGGCCCG 59.873 44.000 18.00 0.00 33.68 6.13
4616 7523 9.845214 ACTAGATGGATATTAGGGAAACTATGT 57.155 33.333 0.00 0.00 0.00 2.29
4627 7534 8.943594 TTAGGGAAACTATGTGGTGTTTATTT 57.056 30.769 0.00 0.00 36.64 1.40
4636 7543 5.923733 TGTGGTGTTTATTTTGTGAACCT 57.076 34.783 0.00 0.00 0.00 3.50
4637 7544 7.589958 ATGTGGTGTTTATTTTGTGAACCTA 57.410 32.000 0.00 0.00 0.00 3.08
4638 7545 7.589958 TGTGGTGTTTATTTTGTGAACCTAT 57.410 32.000 0.00 0.00 0.00 2.57
4639 7546 7.429633 TGTGGTGTTTATTTTGTGAACCTATG 58.570 34.615 0.00 0.00 0.00 2.23
4640 7547 7.068839 TGTGGTGTTTATTTTGTGAACCTATGT 59.931 33.333 0.00 0.00 0.00 2.29
4641 7548 7.381139 GTGGTGTTTATTTTGTGAACCTATGTG 59.619 37.037 0.00 0.00 0.00 3.21
4642 7549 6.866248 GGTGTTTATTTTGTGAACCTATGTGG 59.134 38.462 0.00 0.00 42.93 4.17
4658 7565 7.867445 CCTATGTGGTGTTTATTTTGTGAAC 57.133 36.000 0.00 0.00 0.00 3.18
4659 7566 6.866248 CCTATGTGGTGTTTATTTTGTGAACC 59.134 38.462 0.00 0.00 0.00 3.62
4660 7567 5.923733 TGTGGTGTTTATTTTGTGAACCT 57.076 34.783 0.00 0.00 0.00 3.50
4761 7669 6.632909 TCATTGGCAAATCTGTAATTCTTGG 58.367 36.000 3.01 0.00 0.00 3.61
4809 7717 6.239120 GGATGCATTTAATGGTGATGCTTACT 60.239 38.462 0.00 0.00 44.84 2.24
4965 7873 1.027357 CTTGGACCATACTGGCATGC 58.973 55.000 9.90 9.90 42.67 4.06
5070 9078 7.254795 GGCTACTTTTTATGCATATCGTCTGTT 60.255 37.037 7.36 0.00 0.00 3.16
5191 9323 6.883744 TGTTCACTTTCCCTGCTTTATTTTT 58.116 32.000 0.00 0.00 0.00 1.94
5220 9352 2.431782 AGTGGCATATGCAAATGTTCCC 59.568 45.455 28.07 8.75 44.36 3.97
5244 9376 3.512033 ACTTCATACGAGCTTCCAGAC 57.488 47.619 0.00 0.00 0.00 3.51
5283 9417 9.685276 ATCAATTATGTAGACACATTTCTCCAA 57.315 29.630 0.00 0.00 42.98 3.53
5349 9486 4.364860 GCTAGTAGCTACTTTTCTGGAGC 58.635 47.826 30.40 24.93 38.45 4.70
5388 9526 4.469586 TGACCTCTTACTCCATTGTGCATA 59.530 41.667 0.00 0.00 0.00 3.14
5428 9570 6.072175 GCCACCAAATAGTCATGACAAACTTA 60.072 38.462 27.02 11.06 0.00 2.24
5568 9717 7.488471 GCGAAATCTATGTCACTGTTTACTAGT 59.512 37.037 0.00 0.00 0.00 2.57
5730 10089 8.663025 CACAATGCACCTATATATGATTCTGAC 58.337 37.037 0.00 0.00 0.00 3.51
5933 10297 9.864034 GTATAATTTGCTGTGTACATGTATGTC 57.136 33.333 9.18 3.71 41.97 3.06
5939 10303 4.690748 GCTGTGTACATGTATGTCAGTTGT 59.309 41.667 23.01 0.00 41.97 3.32
6234 10617 5.452496 CGACCTCTCCTCACATTATCAACAT 60.452 44.000 0.00 0.00 0.00 2.71
6345 10728 0.399806 AATTGGTGCCACCCCAACTT 60.400 50.000 12.25 0.00 44.36 2.66
6619 11007 3.007723 CACATCTTCATCGATCCCCATCT 59.992 47.826 0.00 0.00 0.00 2.90
6661 11050 6.349611 CCAAATATCAAAGGTGTCCTTCAGTG 60.350 42.308 1.36 0.00 43.92 3.66
6989 11382 0.108992 AATTCCAGTGCTGCATTGCG 60.109 50.000 18.46 12.16 35.36 4.85
6990 11383 1.246056 ATTCCAGTGCTGCATTGCGT 61.246 50.000 18.46 4.77 35.36 5.24
7249 11661 1.234821 TCACCGTTTCCAAGCATGTC 58.765 50.000 0.00 0.00 0.00 3.06
7444 14555 9.383519 CTAGTCACTACATGGTTGTTCATAAAT 57.616 33.333 0.00 0.00 37.28 1.40
7651 14816 6.366332 GGTAAGATCCAGTATATTTGCTCGTG 59.634 42.308 0.00 0.00 0.00 4.35
7672 14837 5.445939 CGTGTTTGTATGAACTGACTATGCC 60.446 44.000 0.00 0.00 0.00 4.40
7796 14969 1.303317 AAGAACATGTCGTGGCCCC 60.303 57.895 0.00 0.00 0.00 5.80
7834 15007 2.949644 TGGATGAAAGCATGCTGATCAG 59.050 45.455 29.31 18.84 42.66 2.90
7835 15008 2.950309 GGATGAAAGCATGCTGATCAGT 59.050 45.455 29.31 21.10 39.49 3.41
7836 15009 4.132336 GGATGAAAGCATGCTGATCAGTA 58.868 43.478 29.31 19.98 39.49 2.74
7857 15033 8.100791 TCAGTACAATGCCAGTAAAACTTATCT 58.899 33.333 0.00 0.00 0.00 1.98
7867 15043 8.736244 GCCAGTAAAACTTATCTTTGACCATAA 58.264 33.333 0.00 0.00 0.00 1.90
7921 15097 3.066291 TGACTGGTTTTGTCTGTGTGT 57.934 42.857 0.00 0.00 35.63 3.72
7970 15147 7.822334 TCGGTTAGATGTTGATTGACATAACTT 59.178 33.333 0.00 0.00 40.21 2.66
8090 15274 9.274206 AGTAAGTTTGATTTTCTAGGTTCTGTC 57.726 33.333 0.00 0.00 0.00 3.51
8106 15290 1.673665 GTCTGGTTGCCCTGCTCTG 60.674 63.158 0.00 0.00 0.00 3.35
8124 15308 4.444720 GCTCTGTTGTATCATACGCCTAAC 59.555 45.833 0.00 0.00 0.00 2.34
8142 15326 5.513495 GCCTAACAATATCTATCTTCTCGCG 59.487 44.000 0.00 0.00 0.00 5.87
8414 15604 6.916932 GTCGTTACCGAATTATCTTTAGCTCT 59.083 38.462 0.00 0.00 46.26 4.09
8415 15605 6.916387 TCGTTACCGAATTATCTTTAGCTCTG 59.084 38.462 0.00 0.00 40.86 3.35
8470 15682 9.559958 GATACTTGTCATTGATGGTAGTTTTTG 57.440 33.333 0.00 0.00 0.00 2.44
8484 15696 5.693104 GGTAGTTTTTGTCGTCTGTGATGTA 59.307 40.000 0.00 0.00 0.00 2.29
8485 15697 5.907197 AGTTTTTGTCGTCTGTGATGTAG 57.093 39.130 0.00 0.00 0.00 2.74
8544 15756 6.099125 TCAATGTATCCGGGAATCAAGTCTTA 59.901 38.462 0.00 0.00 0.00 2.10
8555 15767 6.828785 GGGAATCAAGTCTTAAGCCATTTAGA 59.171 38.462 0.00 0.00 0.00 2.10
8574 15786 2.169352 AGATACGCAGCTGGTTCTTGAT 59.831 45.455 17.12 1.87 0.00 2.57
8618 15842 5.789521 TCTTAGATGTCAAACGGTCATTGA 58.210 37.500 0.00 0.00 34.56 2.57
8626 15850 3.129462 TCAAACGGTCATTGAACTTGCAA 59.871 39.130 0.00 0.00 34.04 4.08
8627 15851 4.050553 CAAACGGTCATTGAACTTGCAAT 58.949 39.130 0.00 0.00 38.96 3.56
8635 15859 0.033781 TGAACTTGCAATGCCAAGCC 59.966 50.000 14.23 9.08 44.66 4.35
8636 15860 0.033781 GAACTTGCAATGCCAAGCCA 59.966 50.000 14.23 0.00 44.66 4.75
8644 15868 1.000385 CAATGCCAAGCCAAGAACGAA 60.000 47.619 0.00 0.00 0.00 3.85
8655 15879 2.157668 CCAAGAACGAACTCCATTCACG 59.842 50.000 0.00 0.00 37.12 4.35
8671 15895 1.372997 ACGTCAACGCTGTAGCTGG 60.373 57.895 0.00 0.00 44.43 4.85
8679 15903 2.046892 CTGTAGCTGGCCGTTGCT 60.047 61.111 19.13 19.13 42.67 3.91
8685 15909 2.265182 GCTGGCCGTTGCTGGTTTA 61.265 57.895 0.00 0.00 37.74 2.01
8687 15911 1.152943 TGGCCGTTGCTGGTTTACA 60.153 52.632 0.00 0.00 37.74 2.41
8758 16008 5.216614 GTTGAAGAAACTACCCAGAGTCT 57.783 43.478 0.00 0.00 35.75 3.24
8773 16023 3.519579 AGAGTCTCTGATGCATTTCACG 58.480 45.455 0.00 0.00 0.00 4.35
8795 16045 0.108138 AACTGCGGAGGTAGATGTGC 60.108 55.000 9.36 0.00 0.00 4.57
8807 16057 6.072838 GGAGGTAGATGTGCACATATGAAATG 60.073 42.308 31.82 0.00 36.57 2.32
8808 16058 5.240183 AGGTAGATGTGCACATATGAAATGC 59.760 40.000 31.82 17.74 36.57 3.56
8809 16059 5.240183 GGTAGATGTGCACATATGAAATGCT 59.760 40.000 31.82 22.91 40.13 3.79
8810 16060 5.183014 AGATGTGCACATATGAAATGCTG 57.817 39.130 31.45 0.00 40.13 4.41
8811 16061 3.153676 TGTGCACATATGAAATGCTGC 57.846 42.857 17.42 8.22 40.13 5.25
8812 16062 2.492484 TGTGCACATATGAAATGCTGCA 59.508 40.909 17.42 10.88 40.13 4.41
8814 16064 3.305094 GTGCACATATGAAATGCTGCAAC 59.695 43.478 13.17 8.46 40.13 4.17
8816 16066 3.550275 GCACATATGAAATGCTGCAACTG 59.450 43.478 10.38 0.00 36.40 3.16
8817 16067 3.550275 CACATATGAAATGCTGCAACTGC 59.450 43.478 10.38 0.00 42.50 4.40
8818 16068 2.547913 TATGAAATGCTGCAACTGCG 57.452 45.000 6.36 0.00 45.83 5.18
8829 16104 0.108138 GCAACTGCGGAGGTAGATGT 60.108 55.000 9.36 0.00 32.52 3.06
8830 16105 1.645034 CAACTGCGGAGGTAGATGTG 58.355 55.000 9.36 0.00 0.00 3.21
8866 16141 2.240493 ATAATACACGAGCACTGGCC 57.760 50.000 0.00 0.00 42.56 5.36
8901 16176 1.133025 GATGCAACATGGGAGAAACGG 59.867 52.381 0.00 0.00 0.00 4.44
8908 16183 2.825532 ACATGGGAGAAACGGAAATTGG 59.174 45.455 0.00 0.00 0.00 3.16
8910 16185 2.952116 TGGGAGAAACGGAAATTGGTT 58.048 42.857 0.00 0.00 0.00 3.67
8911 16186 2.888414 TGGGAGAAACGGAAATTGGTTC 59.112 45.455 0.00 0.00 35.28 3.62
8912 16187 2.888414 GGGAGAAACGGAAATTGGTTCA 59.112 45.455 0.00 0.00 38.06 3.18
8913 16188 3.305131 GGGAGAAACGGAAATTGGTTCAC 60.305 47.826 0.00 0.00 38.06 3.18
8914 16189 3.568430 GGAGAAACGGAAATTGGTTCACT 59.432 43.478 0.00 0.00 38.06 3.41
8915 16190 4.537015 GAGAAACGGAAATTGGTTCACTG 58.463 43.478 0.00 0.00 38.06 3.66
8916 16191 3.951680 AGAAACGGAAATTGGTTCACTGT 59.048 39.130 0.00 0.00 38.06 3.55
8917 16192 5.127491 AGAAACGGAAATTGGTTCACTGTA 58.873 37.500 0.00 0.00 38.06 2.74
8918 16193 4.823790 AACGGAAATTGGTTCACTGTAC 57.176 40.909 0.00 0.00 38.06 2.90
8920 16195 3.562557 ACGGAAATTGGTTCACTGTACAC 59.437 43.478 0.00 0.00 38.06 2.90
8934 16209 5.865013 TCACTGTACACGGTTTACATACATG 59.135 40.000 7.53 5.18 32.07 3.21
8953 16228 0.523072 GCATACACACCAGCCAGTTG 59.477 55.000 0.00 0.00 0.00 3.16
9005 16280 0.836606 TCCATGGCCGCTCTTATTGA 59.163 50.000 6.96 0.00 0.00 2.57
9042 16317 1.344438 ACGGAACAGAGATCACAAGCA 59.656 47.619 0.00 0.00 0.00 3.91
9055 16330 0.461163 ACAAGCATATACACCGCGCA 60.461 50.000 8.75 0.00 0.00 6.09
9073 16348 4.918201 GCCGCTCAGGGGAATCGG 62.918 72.222 13.12 0.00 40.29 4.18
9111 16386 4.252878 CCCAAAATCCAAATTAGCGCTTT 58.747 39.130 18.68 0.34 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.108250 CCCTCTCAAAACCTCTCCCAAA 59.892 50.000 0.00 0.00 0.00 3.28
2 3 1.705186 CCCTCTCAAAACCTCTCCCAA 59.295 52.381 0.00 0.00 0.00 4.12
4 5 1.557371 CTCCCTCTCAAAACCTCTCCC 59.443 57.143 0.00 0.00 0.00 4.30
5 6 2.499693 CTCTCCCTCTCAAAACCTCTCC 59.500 54.545 0.00 0.00 0.00 3.71
6 7 3.436243 TCTCTCCCTCTCAAAACCTCTC 58.564 50.000 0.00 0.00 0.00 3.20
7 8 3.076785 TCTCTCTCCCTCTCAAAACCTCT 59.923 47.826 0.00 0.00 0.00 3.69
8 9 3.436243 TCTCTCTCCCTCTCAAAACCTC 58.564 50.000 0.00 0.00 0.00 3.85
9 10 3.181412 ACTCTCTCTCCCTCTCAAAACCT 60.181 47.826 0.00 0.00 0.00 3.50
10 11 3.056179 CACTCTCTCTCCCTCTCAAAACC 60.056 52.174 0.00 0.00 0.00 3.27
11 12 3.056179 CCACTCTCTCTCCCTCTCAAAAC 60.056 52.174 0.00 0.00 0.00 2.43
12 13 3.169099 CCACTCTCTCTCCCTCTCAAAA 58.831 50.000 0.00 0.00 0.00 2.44
13 14 2.558575 CCCACTCTCTCTCCCTCTCAAA 60.559 54.545 0.00 0.00 0.00 2.69
14 15 1.006519 CCCACTCTCTCTCCCTCTCAA 59.993 57.143 0.00 0.00 0.00 3.02
15 16 0.628522 CCCACTCTCTCTCCCTCTCA 59.371 60.000 0.00 0.00 0.00 3.27
16 17 0.923358 TCCCACTCTCTCTCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
17 18 0.926293 CTCCCACTCTCTCTCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
18 19 0.923358 TCTCCCACTCTCTCTCCCTC 59.077 60.000 0.00 0.00 0.00 4.30
19 20 0.926293 CTCTCCCACTCTCTCTCCCT 59.074 60.000 0.00 0.00 0.00 4.20
20 21 0.106217 CCTCTCCCACTCTCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
21 22 0.106217 CCCTCTCCCACTCTCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
22 23 0.106217 CCCCTCTCCCACTCTCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
23 24 1.589399 CCCCCTCTCCCACTCTCTCT 61.589 65.000 0.00 0.00 0.00 3.10
24 25 1.075600 CCCCCTCTCCCACTCTCTC 60.076 68.421 0.00 0.00 0.00 3.20
25 26 3.114390 CCCCCTCTCCCACTCTCT 58.886 66.667 0.00 0.00 0.00 3.10
26 27 2.766229 GCCCCCTCTCCCACTCTC 60.766 72.222 0.00 0.00 0.00 3.20
27 28 2.713111 TTTGCCCCCTCTCCCACTCT 62.713 60.000 0.00 0.00 0.00 3.24
28 29 2.203549 CTTTGCCCCCTCTCCCACTC 62.204 65.000 0.00 0.00 0.00 3.51
29 30 2.121506 TTTGCCCCCTCTCCCACT 60.122 61.111 0.00 0.00 0.00 4.00
30 31 2.356667 CTTTGCCCCCTCTCCCAC 59.643 66.667 0.00 0.00 0.00 4.61
31 32 3.661648 GCTTTGCCCCCTCTCCCA 61.662 66.667 0.00 0.00 0.00 4.37
32 33 2.923910 AAGCTTTGCCCCCTCTCCC 61.924 63.158 0.00 0.00 0.00 4.30
33 34 1.680314 CAAGCTTTGCCCCCTCTCC 60.680 63.158 0.00 0.00 0.00 3.71
34 35 1.680314 CCAAGCTTTGCCCCCTCTC 60.680 63.158 0.00 0.00 0.00 3.20
35 36 2.442413 CCAAGCTTTGCCCCCTCT 59.558 61.111 0.00 0.00 0.00 3.69
36 37 2.681421 CCCAAGCTTTGCCCCCTC 60.681 66.667 0.00 0.00 0.00 4.30
37 38 3.100114 AACCCAAGCTTTGCCCCCT 62.100 57.895 0.00 0.00 0.00 4.79
38 39 2.526624 AACCCAAGCTTTGCCCCC 60.527 61.111 0.00 0.00 0.00 5.40
39 40 2.743060 CAACCCAAGCTTTGCCCC 59.257 61.111 0.00 0.00 0.00 5.80
40 41 2.743060 CCAACCCAAGCTTTGCCC 59.257 61.111 0.00 0.00 0.00 5.36
41 42 2.743060 CCCAACCCAAGCTTTGCC 59.257 61.111 0.00 0.00 0.00 4.52
42 43 2.140138 ACCCCAACCCAAGCTTTGC 61.140 57.895 0.00 0.00 0.00 3.68
43 44 1.048160 ACACCCCAACCCAAGCTTTG 61.048 55.000 0.00 0.00 0.00 2.77
44 45 1.048160 CACACCCCAACCCAAGCTTT 61.048 55.000 0.00 0.00 0.00 3.51
45 46 1.457455 CACACCCCAACCCAAGCTT 60.457 57.895 0.00 0.00 0.00 3.74
46 47 2.198426 CACACCCCAACCCAAGCT 59.802 61.111 0.00 0.00 0.00 3.74
47 48 2.123468 ACACACCCCAACCCAAGC 60.123 61.111 0.00 0.00 0.00 4.01
48 49 1.832167 CCACACACCCCAACCCAAG 60.832 63.158 0.00 0.00 0.00 3.61
49 50 2.280416 CCACACACCCCAACCCAA 59.720 61.111 0.00 0.00 0.00 4.12
50 51 3.826822 CCCACACACCCCAACCCA 61.827 66.667 0.00 0.00 0.00 4.51
51 52 4.614036 CCCCACACACCCCAACCC 62.614 72.222 0.00 0.00 0.00 4.11
52 53 3.828023 ACCCCACACACCCCAACC 61.828 66.667 0.00 0.00 0.00 3.77
53 54 2.520741 CACCCCACACACCCCAAC 60.521 66.667 0.00 0.00 0.00 3.77
54 55 3.826822 CCACCCCACACACCCCAA 61.827 66.667 0.00 0.00 0.00 4.12
93 94 0.824109 TGACTTATCCAGCCACTCGG 59.176 55.000 0.00 0.00 0.00 4.63
94 95 1.204704 TGTGACTTATCCAGCCACTCG 59.795 52.381 0.00 0.00 0.00 4.18
95 96 2.234908 ACTGTGACTTATCCAGCCACTC 59.765 50.000 0.00 0.00 30.41 3.51
96 97 2.027745 CACTGTGACTTATCCAGCCACT 60.028 50.000 0.32 0.00 30.41 4.00
97 98 2.350522 CACTGTGACTTATCCAGCCAC 58.649 52.381 0.32 0.00 30.41 5.01
98 99 1.339055 GCACTGTGACTTATCCAGCCA 60.339 52.381 12.86 0.00 30.41 4.75
99 100 1.339055 TGCACTGTGACTTATCCAGCC 60.339 52.381 12.86 0.00 30.41 4.85
100 101 2.099141 TGCACTGTGACTTATCCAGC 57.901 50.000 12.86 0.00 30.41 4.85
101 102 2.413112 CGTTGCACTGTGACTTATCCAG 59.587 50.000 12.86 0.00 32.42 3.86
102 103 2.412870 CGTTGCACTGTGACTTATCCA 58.587 47.619 12.86 0.00 0.00 3.41
103 104 1.128692 GCGTTGCACTGTGACTTATCC 59.871 52.381 12.86 0.00 0.00 2.59
104 105 1.128692 GGCGTTGCACTGTGACTTATC 59.871 52.381 12.86 0.00 0.00 1.75
105 106 1.156736 GGCGTTGCACTGTGACTTAT 58.843 50.000 12.86 0.00 0.00 1.73
106 107 0.882927 GGGCGTTGCACTGTGACTTA 60.883 55.000 12.86 0.00 0.00 2.24
107 108 2.186826 GGGCGTTGCACTGTGACTT 61.187 57.895 12.86 0.00 0.00 3.01
108 109 2.591715 GGGCGTTGCACTGTGACT 60.592 61.111 12.86 0.00 0.00 3.41
109 110 4.012895 CGGGCGTTGCACTGTGAC 62.013 66.667 12.86 3.63 0.00 3.67
110 111 4.228567 TCGGGCGTTGCACTGTGA 62.229 61.111 12.86 0.00 0.00 3.58
111 112 3.716006 CTCGGGCGTTGCACTGTG 61.716 66.667 2.76 2.76 0.00 3.66
130 131 0.388391 TTTAAAGTGCAGCGCATGGC 60.388 50.000 11.47 11.30 41.91 4.40
131 132 1.921887 CATTTAAAGTGCAGCGCATGG 59.078 47.619 11.47 0.00 41.91 3.66
132 133 2.343246 CACATTTAAAGTGCAGCGCATG 59.657 45.455 11.47 6.31 41.91 4.06
133 134 2.030007 ACACATTTAAAGTGCAGCGCAT 60.030 40.909 11.47 0.00 41.91 4.73
134 135 1.336440 ACACATTTAAAGTGCAGCGCA 59.664 42.857 11.47 0.00 40.59 6.09
135 136 1.715519 CACACATTTAAAGTGCAGCGC 59.284 47.619 0.00 0.00 40.59 5.92
136 137 2.318578 CCACACATTTAAAGTGCAGCG 58.681 47.619 14.06 0.00 40.59 5.18
137 138 2.061028 GCCACACATTTAAAGTGCAGC 58.939 47.619 14.06 13.16 40.59 5.25
138 139 2.318578 CGCCACACATTTAAAGTGCAG 58.681 47.619 14.06 9.06 40.59 4.41
139 140 1.601663 GCGCCACACATTTAAAGTGCA 60.602 47.619 14.06 0.00 40.59 4.57
140 141 1.059942 GCGCCACACATTTAAAGTGC 58.940 50.000 14.06 5.52 40.59 4.40
141 142 1.269448 AGGCGCCACACATTTAAAGTG 59.731 47.619 31.54 13.08 42.56 3.16
142 143 1.616159 AGGCGCCACACATTTAAAGT 58.384 45.000 31.54 0.00 0.00 2.66
143 144 2.477863 GCTAGGCGCCACACATTTAAAG 60.478 50.000 31.54 10.16 0.00 1.85
144 145 1.470890 GCTAGGCGCCACACATTTAAA 59.529 47.619 31.54 0.00 0.00 1.52
145 146 1.091537 GCTAGGCGCCACACATTTAA 58.908 50.000 31.54 0.72 0.00 1.52
146 147 0.251916 AGCTAGGCGCCACACATTTA 59.748 50.000 31.54 9.35 40.39 1.40
147 148 0.609131 AAGCTAGGCGCCACACATTT 60.609 50.000 31.54 12.04 40.39 2.32
148 149 1.002134 AAGCTAGGCGCCACACATT 60.002 52.632 31.54 13.61 40.39 2.71
149 150 1.746615 CAAGCTAGGCGCCACACAT 60.747 57.895 31.54 10.27 40.39 3.21
150 151 2.358615 CAAGCTAGGCGCCACACA 60.359 61.111 31.54 9.67 40.39 3.72
151 152 3.127533 CCAAGCTAGGCGCCACAC 61.128 66.667 31.54 17.11 40.39 3.82
152 153 3.315142 CTCCAAGCTAGGCGCCACA 62.315 63.158 31.54 15.42 40.39 4.17
153 154 2.512515 CTCCAAGCTAGGCGCCAC 60.513 66.667 31.54 17.93 40.39 5.01
154 155 3.785859 CCTCCAAGCTAGGCGCCA 61.786 66.667 31.54 14.00 40.39 5.69
159 160 2.202987 CAGCGCCTCCAAGCTAGG 60.203 66.667 2.29 0.00 42.52 3.02
160 161 2.894387 GCAGCGCCTCCAAGCTAG 60.894 66.667 2.29 0.00 42.52 3.42
161 162 3.705289 TGCAGCGCCTCCAAGCTA 61.705 61.111 2.29 0.00 42.52 3.32
163 164 3.958147 TAGTGCAGCGCCTCCAAGC 62.958 63.158 2.29 0.00 0.00 4.01
164 165 2.103042 GTAGTGCAGCGCCTCCAAG 61.103 63.158 2.29 0.00 0.00 3.61
165 166 2.047274 GTAGTGCAGCGCCTCCAA 60.047 61.111 2.29 0.00 0.00 3.53
166 167 2.997315 AGTAGTGCAGCGCCTCCA 60.997 61.111 2.29 0.00 0.00 3.86
167 168 2.510238 CAGTAGTGCAGCGCCTCC 60.510 66.667 2.29 0.00 0.00 4.30
168 169 2.510238 CCAGTAGTGCAGCGCCTC 60.510 66.667 2.29 0.00 0.00 4.70
169 170 4.087892 CCCAGTAGTGCAGCGCCT 62.088 66.667 2.29 0.00 0.00 5.52
170 171 4.394712 ACCCAGTAGTGCAGCGCC 62.395 66.667 2.29 0.00 0.00 6.53
171 172 3.121030 CACCCAGTAGTGCAGCGC 61.121 66.667 0.00 0.00 0.00 5.92
177 178 4.778143 GGCCCGCACCCAGTAGTG 62.778 72.222 0.00 0.00 40.88 2.74
200 201 3.612247 ATCTGTCCACCGTGGCAGC 62.612 63.158 25.37 14.67 39.70 5.25
201 202 1.742880 CATCTGTCCACCGTGGCAG 60.743 63.158 24.71 24.71 40.56 4.85
202 203 2.347114 CATCTGTCCACCGTGGCA 59.653 61.111 13.19 12.68 37.47 4.92
203 204 2.034879 CACATCTGTCCACCGTGGC 61.035 63.158 13.19 8.69 37.47 5.01
204 205 2.034879 GCACATCTGTCCACCGTGG 61.035 63.158 11.73 11.73 39.43 4.94
205 206 0.884259 TTGCACATCTGTCCACCGTG 60.884 55.000 0.00 0.00 0.00 4.94
206 207 0.884704 GTTGCACATCTGTCCACCGT 60.885 55.000 0.00 0.00 0.00 4.83
207 208 0.884259 TGTTGCACATCTGTCCACCG 60.884 55.000 0.00 0.00 0.00 4.94
208 209 0.593128 GTGTTGCACATCTGTCCACC 59.407 55.000 0.00 0.00 34.08 4.61
209 210 0.593128 GGTGTTGCACATCTGTCCAC 59.407 55.000 1.61 0.00 35.86 4.02
210 211 0.537143 GGGTGTTGCACATCTGTCCA 60.537 55.000 1.61 0.00 35.86 4.02
211 212 1.244019 GGGGTGTTGCACATCTGTCC 61.244 60.000 1.61 0.00 35.86 4.02
212 213 0.537143 TGGGGTGTTGCACATCTGTC 60.537 55.000 1.61 0.00 35.86 3.51
213 214 0.538057 CTGGGGTGTTGCACATCTGT 60.538 55.000 1.61 0.00 35.86 3.41
214 215 0.250858 TCTGGGGTGTTGCACATCTG 60.251 55.000 1.61 0.00 35.86 2.90
215 216 0.037303 CTCTGGGGTGTTGCACATCT 59.963 55.000 1.61 0.00 35.86 2.90
216 217 0.962356 CCTCTGGGGTGTTGCACATC 60.962 60.000 1.61 0.00 35.86 3.06
217 218 1.075482 CCTCTGGGGTGTTGCACAT 59.925 57.895 1.61 0.00 35.86 3.21
218 219 2.515398 CCTCTGGGGTGTTGCACA 59.485 61.111 1.61 0.00 35.86 4.57
227 228 3.854669 CAGCGCCTACCTCTGGGG 61.855 72.222 2.29 0.00 40.05 4.96
228 229 4.537433 GCAGCGCCTACCTCTGGG 62.537 72.222 2.29 0.00 38.88 4.45
229 230 3.774528 TGCAGCGCCTACCTCTGG 61.775 66.667 2.29 0.00 0.00 3.86
230 231 2.510238 GTGCAGCGCCTACCTCTG 60.510 66.667 2.29 0.00 0.00 3.35
231 232 3.775654 GGTGCAGCGCCTACCTCT 61.776 66.667 18.47 0.00 0.00 3.69
234 235 4.137872 TACGGTGCAGCGCCTACC 62.138 66.667 35.78 9.67 0.00 3.18
235 236 2.582498 CTACGGTGCAGCGCCTAC 60.582 66.667 35.78 0.00 0.00 3.18
236 237 3.833645 CCTACGGTGCAGCGCCTA 61.834 66.667 35.78 21.25 0.00 3.93
266 267 4.673298 TGTGTAGCACCCGCCACG 62.673 66.667 0.00 0.00 39.83 4.94
267 268 1.448922 TTTTGTGTAGCACCCGCCAC 61.449 55.000 0.00 0.00 39.83 5.01
268 269 0.752009 TTTTTGTGTAGCACCCGCCA 60.752 50.000 0.00 0.00 39.83 5.69
269 270 0.601057 ATTTTTGTGTAGCACCCGCC 59.399 50.000 0.00 0.00 39.83 6.13
270 271 1.000717 ACATTTTTGTGTAGCACCCGC 60.001 47.619 0.00 0.00 32.73 6.13
271 272 2.292016 TGACATTTTTGTGTAGCACCCG 59.708 45.455 0.00 0.00 32.73 5.28
272 273 4.485163 GATGACATTTTTGTGTAGCACCC 58.515 43.478 0.00 0.00 32.73 4.61
273 274 4.158384 CGATGACATTTTTGTGTAGCACC 58.842 43.478 0.00 0.00 32.73 5.01
274 275 4.158384 CCGATGACATTTTTGTGTAGCAC 58.842 43.478 0.00 0.00 31.16 4.40
275 276 3.365868 GCCGATGACATTTTTGTGTAGCA 60.366 43.478 0.00 0.00 31.16 3.49
276 277 3.171277 GCCGATGACATTTTTGTGTAGC 58.829 45.455 0.00 0.00 31.16 3.58
277 278 3.120338 ACGCCGATGACATTTTTGTGTAG 60.120 43.478 0.00 0.00 31.16 2.74
278 279 2.809119 ACGCCGATGACATTTTTGTGTA 59.191 40.909 0.00 0.00 31.16 2.90
279 280 1.606668 ACGCCGATGACATTTTTGTGT 59.393 42.857 0.00 0.00 34.39 3.72
280 281 1.978097 CACGCCGATGACATTTTTGTG 59.022 47.619 0.00 0.00 0.00 3.33
281 282 1.876799 TCACGCCGATGACATTTTTGT 59.123 42.857 0.00 0.00 0.00 2.83
282 283 2.610219 TCACGCCGATGACATTTTTG 57.390 45.000 0.00 0.00 0.00 2.44
283 284 3.634568 TTTCACGCCGATGACATTTTT 57.365 38.095 0.00 0.00 0.00 1.94
284 285 3.848272 ATTTCACGCCGATGACATTTT 57.152 38.095 0.00 0.00 0.00 1.82
285 286 3.938963 ACTATTTCACGCCGATGACATTT 59.061 39.130 0.00 0.00 0.00 2.32
286 287 3.531538 ACTATTTCACGCCGATGACATT 58.468 40.909 0.00 0.00 0.00 2.71
287 288 3.179443 ACTATTTCACGCCGATGACAT 57.821 42.857 0.00 0.00 0.00 3.06
288 289 2.665649 ACTATTTCACGCCGATGACA 57.334 45.000 0.00 0.00 0.00 3.58
289 290 3.369756 TGAAACTATTTCACGCCGATGAC 59.630 43.478 0.00 0.00 44.21 3.06
290 291 3.591023 TGAAACTATTTCACGCCGATGA 58.409 40.909 0.00 0.00 44.21 2.92
302 303 9.436957 ACAGAATGAATTACTCGTGAAACTATT 57.563 29.630 0.00 0.00 39.69 1.73
303 304 8.873830 CACAGAATGAATTACTCGTGAAACTAT 58.126 33.333 0.00 0.00 39.69 2.12
304 305 8.085909 TCACAGAATGAATTACTCGTGAAACTA 58.914 33.333 0.00 0.00 39.69 2.24
305 306 6.929049 TCACAGAATGAATTACTCGTGAAACT 59.071 34.615 0.00 0.00 39.69 2.66
306 307 7.117241 TCACAGAATGAATTACTCGTGAAAC 57.883 36.000 0.00 0.00 39.69 2.78
307 308 7.905604 ATCACAGAATGAATTACTCGTGAAA 57.094 32.000 0.00 0.00 41.93 2.69
308 309 7.905604 AATCACAGAATGAATTACTCGTGAA 57.094 32.000 0.00 0.00 41.93 3.18
309 310 7.602265 TCAAATCACAGAATGAATTACTCGTGA 59.398 33.333 0.00 0.00 41.93 4.35
310 311 7.742151 TCAAATCACAGAATGAATTACTCGTG 58.258 34.615 0.00 0.00 41.93 4.35
311 312 7.905604 TCAAATCACAGAATGAATTACTCGT 57.094 32.000 0.00 0.00 41.93 4.18
312 313 9.778993 AAATCAAATCACAGAATGAATTACTCG 57.221 29.630 0.00 0.00 41.93 4.18
314 315 9.778993 CGAAATCAAATCACAGAATGAATTACT 57.221 29.630 0.00 0.00 41.93 2.24
315 316 9.559958 ACGAAATCAAATCACAGAATGAATTAC 57.440 29.630 0.00 0.00 41.93 1.89
316 317 9.773328 GACGAAATCAAATCACAGAATGAATTA 57.227 29.630 0.00 0.00 41.93 1.40
317 318 7.756722 GGACGAAATCAAATCACAGAATGAATT 59.243 33.333 0.00 0.00 41.93 2.17
318 319 7.253422 GGACGAAATCAAATCACAGAATGAAT 58.747 34.615 0.00 0.00 41.93 2.57
319 320 6.349280 GGGACGAAATCAAATCACAGAATGAA 60.349 38.462 0.00 0.00 41.93 2.57
320 321 5.123820 GGGACGAAATCAAATCACAGAATGA 59.876 40.000 0.00 0.00 43.13 2.57
321 322 5.335127 GGGACGAAATCAAATCACAGAATG 58.665 41.667 0.00 0.00 46.00 2.67
322 323 5.567138 GGGACGAAATCAAATCACAGAAT 57.433 39.130 0.00 0.00 0.00 2.40
339 340 8.209482 AAATTTAACAATTTTGACCTCGGGACG 61.209 37.037 0.00 0.00 46.37 4.79
340 341 5.441709 TTTAACAATTTTGACCTCGGGAC 57.558 39.130 0.00 0.00 0.00 4.46
341 342 6.658188 AATTTAACAATTTTGACCTCGGGA 57.342 33.333 0.00 0.00 0.00 5.14
342 343 6.147000 CCAAATTTAACAATTTTGACCTCGGG 59.853 38.462 0.00 0.00 40.09 5.14
343 344 6.704050 ACCAAATTTAACAATTTTGACCTCGG 59.296 34.615 0.00 0.00 40.09 4.63
344 345 7.223777 ACACCAAATTTAACAATTTTGACCTCG 59.776 33.333 0.00 0.00 40.09 4.63
345 346 8.432110 ACACCAAATTTAACAATTTTGACCTC 57.568 30.769 0.00 0.00 40.09 3.85
346 347 8.672815 CAACACCAAATTTAACAATTTTGACCT 58.327 29.630 0.00 0.00 40.09 3.85
347 348 7.430793 GCAACACCAAATTTAACAATTTTGACC 59.569 33.333 0.00 0.00 40.09 4.02
348 349 7.163357 CGCAACACCAAATTTAACAATTTTGAC 59.837 33.333 0.00 0.00 40.09 3.18
349 350 7.064609 TCGCAACACCAAATTTAACAATTTTGA 59.935 29.630 0.00 0.00 40.09 2.69
350 351 7.182761 TCGCAACACCAAATTTAACAATTTTG 58.817 30.769 0.00 0.00 40.09 2.44
351 352 7.308782 TCGCAACACCAAATTTAACAATTTT 57.691 28.000 0.00 0.00 40.09 1.82
352 353 6.018343 CCTCGCAACACCAAATTTAACAATTT 60.018 34.615 0.00 0.00 42.37 1.82
353 354 5.465056 CCTCGCAACACCAAATTTAACAATT 59.535 36.000 0.00 0.00 33.72 2.32
354 355 4.987912 CCTCGCAACACCAAATTTAACAAT 59.012 37.500 0.00 0.00 0.00 2.71
355 356 4.363999 CCTCGCAACACCAAATTTAACAA 58.636 39.130 0.00 0.00 0.00 2.83
356 357 3.243569 CCCTCGCAACACCAAATTTAACA 60.244 43.478 0.00 0.00 0.00 2.41
357 358 3.313690 CCCTCGCAACACCAAATTTAAC 58.686 45.455 0.00 0.00 0.00 2.01
358 359 2.297597 CCCCTCGCAACACCAAATTTAA 59.702 45.455 0.00 0.00 0.00 1.52
359 360 1.889829 CCCCTCGCAACACCAAATTTA 59.110 47.619 0.00 0.00 0.00 1.40
360 361 0.678950 CCCCTCGCAACACCAAATTT 59.321 50.000 0.00 0.00 0.00 1.82
361 362 0.178975 TCCCCTCGCAACACCAAATT 60.179 50.000 0.00 0.00 0.00 1.82
362 363 0.039618 ATCCCCTCGCAACACCAAAT 59.960 50.000 0.00 0.00 0.00 2.32
363 364 0.893270 CATCCCCTCGCAACACCAAA 60.893 55.000 0.00 0.00 0.00 3.28
364 365 1.303236 CATCCCCTCGCAACACCAA 60.303 57.895 0.00 0.00 0.00 3.67
365 366 2.220586 TCATCCCCTCGCAACACCA 61.221 57.895 0.00 0.00 0.00 4.17
366 367 1.745489 GTCATCCCCTCGCAACACC 60.745 63.158 0.00 0.00 0.00 4.16
367 368 1.745489 GGTCATCCCCTCGCAACAC 60.745 63.158 0.00 0.00 0.00 3.32
368 369 2.668632 GGTCATCCCCTCGCAACA 59.331 61.111 0.00 0.00 0.00 3.33
369 370 2.511600 CGGTCATCCCCTCGCAAC 60.512 66.667 0.00 0.00 0.00 4.17
370 371 2.238847 CTTCGGTCATCCCCTCGCAA 62.239 60.000 0.00 0.00 0.00 4.85
371 372 2.682136 TTCGGTCATCCCCTCGCA 60.682 61.111 0.00 0.00 0.00 5.10
372 373 1.956629 TTCTTCGGTCATCCCCTCGC 61.957 60.000 0.00 0.00 0.00 5.03
373 374 0.179108 GTTCTTCGGTCATCCCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
374 375 0.179108 CGTTCTTCGGTCATCCCCTC 60.179 60.000 0.00 0.00 35.71 4.30
375 376 0.613853 TCGTTCTTCGGTCATCCCCT 60.614 55.000 0.00 0.00 40.32 4.79
376 377 0.179108 CTCGTTCTTCGGTCATCCCC 60.179 60.000 0.00 0.00 40.32 4.81
377 378 0.806492 GCTCGTTCTTCGGTCATCCC 60.806 60.000 0.00 0.00 40.32 3.85
378 379 0.173708 AGCTCGTTCTTCGGTCATCC 59.826 55.000 0.00 0.00 40.32 3.51
379 380 2.541999 CCTAGCTCGTTCTTCGGTCATC 60.542 54.545 0.00 0.00 40.32 2.92
380 381 1.405821 CCTAGCTCGTTCTTCGGTCAT 59.594 52.381 0.00 0.00 40.32 3.06
381 382 0.809385 CCTAGCTCGTTCTTCGGTCA 59.191 55.000 0.00 0.00 40.32 4.02
382 383 0.100861 CCCTAGCTCGTTCTTCGGTC 59.899 60.000 0.00 0.00 40.32 4.79
383 384 1.321074 CCCCTAGCTCGTTCTTCGGT 61.321 60.000 0.00 0.00 40.32 4.69
384 385 1.437986 CCCCTAGCTCGTTCTTCGG 59.562 63.158 0.00 0.00 40.32 4.30
385 386 1.227002 GCCCCTAGCTCGTTCTTCG 60.227 63.158 0.00 0.00 38.99 3.79
386 387 1.227002 CGCCCCTAGCTCGTTCTTC 60.227 63.158 0.00 0.00 40.39 2.87
387 388 2.722201 CCGCCCCTAGCTCGTTCTT 61.722 63.158 0.00 0.00 40.39 2.52
388 389 3.148279 CCGCCCCTAGCTCGTTCT 61.148 66.667 0.00 0.00 40.39 3.01
389 390 4.893601 GCCGCCCCTAGCTCGTTC 62.894 72.222 0.00 0.00 40.39 3.95
404 405 4.632974 CATAGGGGAGCCGCAGCC 62.633 72.222 6.35 0.00 41.25 4.85
405 406 2.893682 AAACATAGGGGAGCCGCAGC 62.894 60.000 6.35 0.00 40.32 5.25
406 407 0.394352 AAAACATAGGGGAGCCGCAG 60.394 55.000 6.35 0.00 0.00 5.18
407 408 0.679640 CAAAACATAGGGGAGCCGCA 60.680 55.000 6.35 0.00 0.00 5.69
408 409 2.004808 GCAAAACATAGGGGAGCCGC 62.005 60.000 0.00 0.00 0.00 6.53
409 410 1.384222 GGCAAAACATAGGGGAGCCG 61.384 60.000 0.00 0.00 0.00 5.52
410 411 0.324275 TGGCAAAACATAGGGGAGCC 60.324 55.000 0.00 0.00 40.93 4.70
411 412 1.410153 CATGGCAAAACATAGGGGAGC 59.590 52.381 0.00 0.00 0.00 4.70
412 413 2.034124 CCATGGCAAAACATAGGGGAG 58.966 52.381 0.00 0.00 0.00 4.30
413 414 1.964344 GCCATGGCAAAACATAGGGGA 60.964 52.381 32.08 0.00 41.49 4.81
414 415 0.465287 GCCATGGCAAAACATAGGGG 59.535 55.000 32.08 0.00 41.49 4.79
449 450 1.988107 ACACCTCACATCATCCCAAGT 59.012 47.619 0.00 0.00 0.00 3.16
450 451 2.362736 CACACCTCACATCATCCCAAG 58.637 52.381 0.00 0.00 0.00 3.61
451 452 1.614051 GCACACCTCACATCATCCCAA 60.614 52.381 0.00 0.00 0.00 4.12
452 453 0.035152 GCACACCTCACATCATCCCA 60.035 55.000 0.00 0.00 0.00 4.37
454 455 0.108186 TCGCACACCTCACATCATCC 60.108 55.000 0.00 0.00 0.00 3.51
481 1562 4.350245 TCTCGGGTAATCTCTTTCTTCCA 58.650 43.478 0.00 0.00 0.00 3.53
494 1575 1.480954 GTCTGATTGCCTCTCGGGTAA 59.519 52.381 0.00 0.00 43.53 2.85
980 2063 2.866726 GCTGGAGATCCGGAGAGGC 61.867 68.421 11.34 4.61 45.36 4.70
1075 2170 1.814169 GGGAAGAAGTTAGCGGCCG 60.814 63.158 24.05 24.05 0.00 6.13
1076 2171 1.451567 GGGGAAGAAGTTAGCGGCC 60.452 63.158 0.00 0.00 0.00 6.13
1153 2258 4.842091 GTGTCGTCGCCCGCGTAT 62.842 66.667 4.92 0.00 40.74 3.06
1229 2338 2.289547 TCAACGAACTAAAACAGCCTGC 59.710 45.455 0.00 0.00 0.00 4.85
1259 2434 2.093658 TCAGCACTAAGAATCGGTTCCC 60.094 50.000 4.40 0.00 34.81 3.97
1330 2505 4.454504 TCGAAAACTTAGGAATGAAGCACC 59.545 41.667 0.00 0.00 0.00 5.01
1360 2546 0.555769 TTGAACCAGAACCCAAGGCT 59.444 50.000 0.00 0.00 0.00 4.58
1396 2582 4.943705 CCACTATGGCAATTAACTGACAGT 59.056 41.667 1.07 1.07 37.88 3.55
1397 2583 4.336433 CCCACTATGGCAATTAACTGACAG 59.664 45.833 0.00 0.00 37.88 3.51
1427 2615 2.753296 GTGCCTGCTACAAAATTTGCA 58.247 42.857 5.52 0.00 0.00 4.08
1497 2810 5.422666 TCGCATTTTATTGATTCGATGCT 57.577 34.783 0.00 0.00 38.12 3.79
1502 2815 4.911610 GTCCCATCGCATTTTATTGATTCG 59.088 41.667 0.00 0.00 0.00 3.34
1514 2827 2.124570 GTGCAGGTCCCATCGCAT 60.125 61.111 0.00 0.00 36.64 4.73
1541 2854 0.602905 GCACACCCTACGCTCAAACT 60.603 55.000 0.00 0.00 0.00 2.66
1638 2961 9.448438 TGTATGTAAGAAATGCTCACAGTAATT 57.552 29.630 0.00 0.00 0.00 1.40
1639 2962 8.883731 GTGTATGTAAGAAATGCTCACAGTAAT 58.116 33.333 0.00 0.00 0.00 1.89
1640 2963 8.094548 AGTGTATGTAAGAAATGCTCACAGTAA 58.905 33.333 0.00 0.00 0.00 2.24
1651 2974 8.774586 GTTTGACTCACAGTGTATGTAAGAAAT 58.225 33.333 0.00 0.00 41.41 2.17
1874 3418 0.951558 GGGCAAGCAGAAGAAAACGA 59.048 50.000 0.00 0.00 0.00 3.85
2421 4544 2.148916 TTGTAGTTCAGCTGGTGTCG 57.851 50.000 15.13 0.00 0.00 4.35
2513 4643 4.274602 TCTCGCATACCCACAAACTAAA 57.725 40.909 0.00 0.00 0.00 1.85
2524 4654 3.555956 ACAACGATCATTTCTCGCATACC 59.444 43.478 0.00 0.00 39.71 2.73
2614 4793 8.257830 TCAACAAATTACATAGCATCGTAACA 57.742 30.769 0.00 0.00 30.79 2.41
2974 5153 6.659242 ACCTGATAACCCAATCAACAAGTAAG 59.341 38.462 0.00 0.00 35.51 2.34
2978 5157 5.711976 AGAACCTGATAACCCAATCAACAAG 59.288 40.000 0.00 0.00 35.51 3.16
3198 5378 8.844441 TTGGTAAAAACAATTTACTTCAGACG 57.156 30.769 10.01 0.00 35.73 4.18
3264 5449 6.126863 TCTTCATGAGTATTTCCTTGGTGT 57.873 37.500 0.00 0.00 0.00 4.16
3311 5503 5.842907 AGGAAAGTGAAAAAGGGAAATTCG 58.157 37.500 0.00 0.00 0.00 3.34
3371 5563 3.260884 ACGCTCAAGGAATCAAGAAGGTA 59.739 43.478 0.00 0.00 0.00 3.08
3379 5571 5.487433 TCTTATGAAACGCTCAAGGAATCA 58.513 37.500 0.00 0.00 37.67 2.57
3435 5627 6.697455 TGATATATGTTTGACACGAGCTTCTC 59.303 38.462 0.00 0.00 0.00 2.87
3619 5813 6.012508 ACACCTCTCCTTGAAAATCAGGATAA 60.013 38.462 0.00 0.00 0.00 1.75
3637 5831 2.639839 ACAGGCAAATCACTACACCTCT 59.360 45.455 0.00 0.00 0.00 3.69
3786 6009 6.176896 GGTAGAAGAAAAGGCTTCAGAAGAT 58.823 40.000 14.86 0.00 45.21 2.40
3859 6086 2.293399 GTCAGTCAAAAATTCACCGCCT 59.707 45.455 0.00 0.00 0.00 5.52
4139 6371 0.313987 GGAGTTTCAACAAAGGGGCG 59.686 55.000 0.00 0.00 0.00 6.13
4163 6395 3.754850 CAGTTCAGCTCACATTCAATGGA 59.245 43.478 1.58 0.00 33.60 3.41
4205 6437 2.829023 CCCCTCCTCTTTACTGGTGTA 58.171 52.381 0.00 0.00 0.00 2.90
4299 6851 4.066139 CTTGGCAAGGGGGAGGGG 62.066 72.222 19.55 0.00 0.00 4.79
4300 6852 2.386391 AAACTTGGCAAGGGGGAGGG 62.386 60.000 29.26 4.78 0.00 4.30
4304 6856 0.836606 AAACAAACTTGGCAAGGGGG 59.163 50.000 29.26 19.47 0.00 5.40
4457 7017 7.569240 GGGCCAGCTATATATAGTCAAAGAAT 58.431 38.462 18.81 0.00 32.96 2.40
4462 7022 4.350245 ACGGGCCAGCTATATATAGTCAA 58.650 43.478 18.81 0.00 32.96 3.18
4521 7082 5.934625 CACAGCAAGTTCAGAACCTTAGTAT 59.065 40.000 9.85 0.00 0.00 2.12
4603 7510 8.798402 CAAAATAAACACCACATAGTTTCCCTA 58.202 33.333 0.00 0.00 38.71 3.53
4616 7523 7.429633 CACATAGGTTCACAAAATAAACACCA 58.570 34.615 0.00 0.00 0.00 4.17
4636 7543 7.589958 AGGTTCACAAAATAAACACCACATA 57.410 32.000 0.00 0.00 0.00 2.29
4637 7544 6.478512 AGGTTCACAAAATAAACACCACAT 57.521 33.333 0.00 0.00 0.00 3.21
4638 7545 5.923733 AGGTTCACAAAATAAACACCACA 57.076 34.783 0.00 0.00 0.00 4.17
4639 7546 7.430441 ACATAGGTTCACAAAATAAACACCAC 58.570 34.615 0.00 0.00 0.00 4.16
4640 7547 7.589958 ACATAGGTTCACAAAATAAACACCA 57.410 32.000 0.00 0.00 0.00 4.17
4641 7548 8.880878 AAACATAGGTTCACAAAATAAACACC 57.119 30.769 0.00 0.00 35.82 4.16
4651 7558 8.792633 CCTGAAAAGATAAACATAGGTTCACAA 58.207 33.333 0.00 0.00 35.82 3.33
4652 7559 7.942341 ACCTGAAAAGATAAACATAGGTTCACA 59.058 33.333 0.00 0.00 35.82 3.58
4653 7560 8.336801 ACCTGAAAAGATAAACATAGGTTCAC 57.663 34.615 0.00 0.00 35.82 3.18
4654 7561 8.792633 CAACCTGAAAAGATAAACATAGGTTCA 58.207 33.333 0.00 0.00 43.33 3.18
4655 7562 8.793592 ACAACCTGAAAAGATAAACATAGGTTC 58.206 33.333 0.00 0.00 43.33 3.62
4656 7563 8.706322 ACAACCTGAAAAGATAAACATAGGTT 57.294 30.769 0.00 0.00 45.36 3.50
4657 7564 9.449719 CTACAACCTGAAAAGATAAACATAGGT 57.550 33.333 0.00 0.00 38.85 3.08
4658 7565 9.667107 TCTACAACCTGAAAAGATAAACATAGG 57.333 33.333 0.00 0.00 0.00 2.57
4660 7567 9.444600 GGTCTACAACCTGAAAAGATAAACATA 57.555 33.333 0.00 0.00 45.45 2.29
4761 7669 7.969314 TCCAGACAAAAATTAACAAAGCAAAC 58.031 30.769 0.00 0.00 0.00 2.93
4809 7717 5.595885 GCAATAGCTCTCTGTGATACAGAA 58.404 41.667 12.22 0.00 45.24 3.02
4965 7873 3.789756 GCTTGATCATCAGATTTTGCGTG 59.210 43.478 0.00 0.00 33.72 5.34
5220 9352 3.325870 TGGAAGCTCGTATGAAGTTGTG 58.674 45.455 0.00 0.00 0.00 3.33
5244 9376 6.861065 ACATAATTGATAACTTACTGCCCG 57.139 37.500 0.00 0.00 0.00 6.13
5319 9456 7.934120 CAGAAAAGTAGCTACTAGCCCATATTT 59.066 37.037 26.29 18.81 43.77 1.40
5349 9486 2.120232 GGTCAAGACGCATCAGATACG 58.880 52.381 1.15 1.15 0.00 3.06
5388 9526 1.229082 TGGCCGTACTGAAGAGGGT 60.229 57.895 0.00 0.00 0.00 4.34
5428 9570 8.407064 TGGTTTTATGTCGATTTGTAAACAACT 58.593 29.630 12.11 0.00 35.28 3.16
5568 9717 0.464193 ATGTGGCACATGCGCAGATA 60.464 50.000 30.96 0.36 44.52 1.98
5721 10080 3.574396 AGAAAGTGGAGACGTCAGAATCA 59.426 43.478 19.50 5.35 0.00 2.57
5730 10089 3.738282 CAGAAACAGAGAAAGTGGAGACG 59.262 47.826 0.00 0.00 0.00 4.18
5818 10182 4.394300 CCAACTTCAATAGTTCTGCTCAGG 59.606 45.833 0.00 0.00 45.29 3.86
5933 10297 7.036220 CCACTAGTACAGATCCTAAACAACTG 58.964 42.308 0.00 0.00 35.14 3.16
5939 10303 7.973048 ATCAACCACTAGTACAGATCCTAAA 57.027 36.000 0.00 0.00 0.00 1.85
6050 10414 1.139256 GCTCTAGCCTACCCCAACTTC 59.861 57.143 0.00 0.00 34.31 3.01
6345 10728 4.322424 CCGGAATGATGATATACGGGACAA 60.322 45.833 0.00 0.00 36.45 3.18
6619 11007 2.219080 TGGGATCAATGCTGCAGAAA 57.781 45.000 20.43 4.69 0.00 2.52
6989 11382 1.414550 GGGGGCATGTAGAGAGAAGAC 59.585 57.143 0.00 0.00 0.00 3.01
6990 11383 1.008327 TGGGGGCATGTAGAGAGAAGA 59.992 52.381 0.00 0.00 0.00 2.87
7249 11661 9.746711 CTTCGAAGAAAACATACATAAACTGAG 57.253 33.333 20.74 0.00 45.90 3.35
7444 14555 6.143915 ACAGCCTTAACCATAGATTCTCCTA 58.856 40.000 0.00 0.00 0.00 2.94
7651 14816 4.941263 TGGGCATAGTCAGTTCATACAAAC 59.059 41.667 0.00 0.00 0.00 2.93
7672 14837 0.179073 CTGCTAACGGGATCCACTGG 60.179 60.000 15.23 1.81 0.00 4.00
7796 14969 5.398169 TCATCCAATTTCAAACCGATTTCG 58.602 37.500 0.00 0.00 39.44 3.46
7834 15007 9.341899 CAAAGATAAGTTTTACTGGCATTGTAC 57.658 33.333 0.00 0.00 0.00 2.90
7835 15008 9.290988 TCAAAGATAAGTTTTACTGGCATTGTA 57.709 29.630 0.00 0.00 0.00 2.41
7836 15009 8.082242 GTCAAAGATAAGTTTTACTGGCATTGT 58.918 33.333 0.00 0.00 0.00 2.71
7857 15033 1.713647 TGGCCCTTCCTTATGGTCAAA 59.286 47.619 0.00 0.00 29.08 2.69
7867 15043 1.360393 TTTCTGTGGTGGCCCTTCCT 61.360 55.000 0.00 0.00 35.26 3.36
7900 15076 3.620488 ACACACAGACAAAACCAGTCAT 58.380 40.909 0.00 0.00 38.46 3.06
7921 15097 5.772124 ATGATGAATCTCAGCACTAGCGGA 61.772 45.833 0.00 0.00 46.19 5.54
7970 15147 9.394767 ACTGCACTCATCAAATTATAATGTGTA 57.605 29.630 14.11 7.66 0.00 2.90
8106 15290 8.758633 AGATATTGTTAGGCGTATGATACAAC 57.241 34.615 3.24 0.60 0.00 3.32
8142 15326 1.337821 CGTGCTCTTCGTACCTGTTC 58.662 55.000 0.00 0.00 0.00 3.18
8225 15410 2.030893 CACACACATCTTTCGGCAACAT 60.031 45.455 0.00 0.00 0.00 2.71
8414 15604 1.138069 TGTTCTCAAGTTGGACTCGCA 59.862 47.619 2.34 0.00 0.00 5.10
8415 15605 1.865865 TGTTCTCAAGTTGGACTCGC 58.134 50.000 2.34 0.00 0.00 5.03
8470 15682 4.795795 CACATTCTCTACATCACAGACGAC 59.204 45.833 0.00 0.00 0.00 4.34
8484 15696 7.834681 TGGATACTAGACTGTTACACATTCTCT 59.165 37.037 0.00 0.00 38.73 3.10
8485 15697 7.997482 TGGATACTAGACTGTTACACATTCTC 58.003 38.462 0.00 0.00 38.73 2.87
8501 15713 5.596361 ACATTGACTGGAGTCTGGATACTAG 59.404 44.000 8.24 0.00 44.99 2.57
8504 15716 4.744795 ACATTGACTGGAGTCTGGATAC 57.255 45.455 8.24 0.00 44.99 2.24
8506 15718 4.346418 GGATACATTGACTGGAGTCTGGAT 59.654 45.833 8.24 1.48 44.99 3.41
8518 15730 4.451900 ACTTGATTCCCGGATACATTGAC 58.548 43.478 0.73 0.00 0.00 3.18
8544 15756 2.874701 CAGCTGCGTATCTAAATGGCTT 59.125 45.455 0.00 0.00 0.00 4.35
8555 15767 2.283298 CATCAAGAACCAGCTGCGTAT 58.717 47.619 8.66 0.00 0.00 3.06
8618 15842 0.469070 TTGGCTTGGCATTGCAAGTT 59.531 45.000 11.39 0.00 0.00 2.66
8626 15850 0.598065 GTTCGTTCTTGGCTTGGCAT 59.402 50.000 0.00 0.00 0.00 4.40
8627 15851 0.465460 AGTTCGTTCTTGGCTTGGCA 60.465 50.000 0.00 0.00 0.00 4.92
8631 15855 2.568623 ATGGAGTTCGTTCTTGGCTT 57.431 45.000 0.00 0.00 0.00 4.35
8635 15859 2.800544 ACGTGAATGGAGTTCGTTCTTG 59.199 45.455 4.98 0.30 40.95 3.02
8636 15860 3.057734 GACGTGAATGGAGTTCGTTCTT 58.942 45.455 4.98 0.00 40.95 2.52
8644 15868 0.033504 AGCGTTGACGTGAATGGAGT 59.966 50.000 9.05 0.00 42.22 3.85
8671 15895 1.170290 ACCTGTAAACCAGCAACGGC 61.170 55.000 0.00 0.00 40.06 5.68
8679 15903 2.729194 ACAACAAGCACCTGTAAACCA 58.271 42.857 0.00 0.00 0.00 3.67
8685 15909 2.035832 GCCATTAACAACAAGCACCTGT 59.964 45.455 0.00 0.00 0.00 4.00
8687 15911 2.558359 GAGCCATTAACAACAAGCACCT 59.442 45.455 0.00 0.00 0.00 4.00
8692 15916 2.557924 TGCCAGAGCCATTAACAACAAG 59.442 45.455 0.00 0.00 38.69 3.16
8750 16000 3.622163 GTGAAATGCATCAGAGACTCTGG 59.378 47.826 28.13 16.37 44.39 3.86
8751 16001 3.306434 CGTGAAATGCATCAGAGACTCTG 59.694 47.826 24.13 24.13 45.59 3.35
8752 16002 3.519579 CGTGAAATGCATCAGAGACTCT 58.480 45.455 0.00 0.00 0.00 3.24
8758 16008 2.083774 GTTCCCGTGAAATGCATCAGA 58.916 47.619 0.00 0.00 30.79 3.27
8773 16023 0.105039 CATCTACCTCCGCAGTTCCC 59.895 60.000 0.00 0.00 0.00 3.97
8795 16045 3.550275 GCAGTTGCAGCATTTCATATGTG 59.450 43.478 2.55 0.00 41.59 3.21
8807 16057 2.047274 TACCTCCGCAGTTGCAGC 60.047 61.111 4.84 0.00 42.21 5.25
8808 16058 0.176680 ATCTACCTCCGCAGTTGCAG 59.823 55.000 4.84 0.00 42.21 4.41
8809 16059 0.108186 CATCTACCTCCGCAGTTGCA 60.108 55.000 4.84 0.00 42.21 4.08
8810 16060 0.108138 ACATCTACCTCCGCAGTTGC 60.108 55.000 0.00 0.00 37.78 4.17
8811 16061 1.645034 CACATCTACCTCCGCAGTTG 58.355 55.000 0.00 0.00 0.00 3.16
8812 16062 0.108138 GCACATCTACCTCCGCAGTT 60.108 55.000 0.00 0.00 0.00 3.16
8814 16064 0.807667 GTGCACATCTACCTCCGCAG 60.808 60.000 13.17 0.00 0.00 5.18
8816 16066 0.391130 TTGTGCACATCTACCTCCGC 60.391 55.000 22.39 0.00 0.00 5.54
8817 16067 1.066858 AGTTGTGCACATCTACCTCCG 60.067 52.381 25.35 0.00 0.00 4.63
8818 16068 2.622436 GAGTTGTGCACATCTACCTCC 58.378 52.381 26.31 12.67 0.00 4.30
8819 16069 2.028112 TGGAGTTGTGCACATCTACCTC 60.028 50.000 29.14 22.22 0.00 3.85
8820 16070 1.977854 TGGAGTTGTGCACATCTACCT 59.022 47.619 29.14 16.96 0.00 3.08
8821 16071 2.076863 GTGGAGTTGTGCACATCTACC 58.923 52.381 29.14 26.58 44.20 3.18
8829 16104 6.937465 TGTATTATTAGTTGTGGAGTTGTGCA 59.063 34.615 0.00 0.00 0.00 4.57
8830 16105 7.241376 GTGTATTATTAGTTGTGGAGTTGTGC 58.759 38.462 0.00 0.00 0.00 4.57
8866 16141 1.067706 TGCATCGGAATGGCTTTGTTG 60.068 47.619 0.00 0.00 33.19 3.33
8880 16155 1.202065 CGTTTCTCCCATGTTGCATCG 60.202 52.381 0.00 0.00 0.00 3.84
8901 16176 3.562557 ACCGTGTACAGTGAACCAATTTC 59.437 43.478 0.00 0.00 34.41 2.17
8908 16183 5.691305 TGTATGTAAACCGTGTACAGTGAAC 59.309 40.000 7.61 4.32 35.04 3.18
8910 16185 5.450592 TGTATGTAAACCGTGTACAGTGA 57.549 39.130 7.61 0.00 35.04 3.41
8911 16186 5.445407 GCATGTATGTAAACCGTGTACAGTG 60.445 44.000 7.61 5.28 35.04 3.66
8912 16187 4.628333 GCATGTATGTAAACCGTGTACAGT 59.372 41.667 7.61 0.00 35.04 3.55
8913 16188 4.627900 TGCATGTATGTAAACCGTGTACAG 59.372 41.667 7.61 0.00 35.04 2.74
8914 16189 4.566987 TGCATGTATGTAAACCGTGTACA 58.433 39.130 3.98 3.98 35.98 2.90
8915 16190 5.728351 ATGCATGTATGTAAACCGTGTAC 57.272 39.130 0.00 0.00 0.00 2.90
8916 16191 6.256104 GTGTATGCATGTATGTAAACCGTGTA 59.744 38.462 10.16 0.00 0.00 2.90
8917 16192 5.064198 GTGTATGCATGTATGTAAACCGTGT 59.936 40.000 10.16 0.00 0.00 4.49
8918 16193 5.064071 TGTGTATGCATGTATGTAAACCGTG 59.936 40.000 10.16 0.00 0.00 4.94
8920 16195 5.498159 GTGTGTATGCATGTATGTAAACCG 58.502 41.667 10.16 0.00 0.00 4.44
8934 16209 0.523072 CAACTGGCTGGTGTGTATGC 59.477 55.000 0.63 0.00 0.00 3.14
9005 16280 1.282248 CGTGGTGCGTTCGTCTGAAT 61.282 55.000 0.00 0.00 36.29 2.57
9024 16299 6.201806 GTGTATATGCTTGTGATCTCTGTTCC 59.798 42.308 0.00 0.00 0.00 3.62
9042 16317 2.355837 CGGCTGCGCGGTGTATAT 60.356 61.111 19.23 0.00 0.00 0.86
9055 16330 3.854669 CGATTCCCCTGAGCGGCT 61.855 66.667 0.00 0.00 0.00 5.52
9058 16333 2.107141 GACCGATTCCCCTGAGCG 59.893 66.667 0.00 0.00 0.00 5.03
9111 16386 2.095461 CAGGACTTCATCGACTCCAGA 58.905 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.