Multiple sequence alignment - TraesCS5B01G357200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G357200 chr5B 100.000 4631 0 0 1 4631 536590755 536586125 0.000000e+00 8552.0
1 TraesCS5B01G357200 chr5B 93.082 318 21 1 1581 1898 50653748 50654064 9.080000e-127 464.0
2 TraesCS5B01G357200 chr5B 94.891 137 4 3 438 572 423739019 423739154 1.310000e-50 211.0
3 TraesCS5B01G357200 chr5B 94.231 104 6 0 1370 1473 50653653 50653756 4.800000e-35 159.0
4 TraesCS5B01G357200 chr5D 94.799 4095 157 16 563 4631 441023529 441019465 0.000000e+00 6331.0
5 TraesCS5B01G357200 chr5D 92.857 210 11 4 38 245 37862313 37862520 7.530000e-78 302.0
6 TraesCS5B01G357200 chr5D 95.385 130 4 2 438 566 134475954 134476082 6.070000e-49 206.0
7 TraesCS5B01G357200 chr5A 94.908 3162 140 10 575 3726 557130126 557126976 0.000000e+00 4927.0
8 TraesCS5B01G357200 chr5A 89.627 858 47 14 3807 4631 557126978 557126130 0.000000e+00 1053.0
9 TraesCS5B01G357200 chr5A 94.074 135 5 2 438 569 537933065 537932931 7.860000e-48 202.0
10 TraesCS5B01G357200 chr4D 94.061 522 31 0 1370 1891 503796429 503795908 0.000000e+00 793.0
11 TraesCS5B01G357200 chr6A 87.436 390 37 5 1504 1892 52324032 52323654 5.500000e-119 438.0
12 TraesCS5B01G357200 chr6A 87.436 390 37 5 1504 1892 52329349 52328971 5.500000e-119 438.0
13 TraesCS5B01G357200 chr6A 94.361 266 15 0 1626 1891 16649662 16649397 4.310000e-110 409.0
14 TraesCS5B01G357200 chr6A 92.754 207 12 3 41 245 117001342 117001137 3.500000e-76 296.0
15 TraesCS5B01G357200 chr2B 91.729 266 22 0 1626 1891 526519327 526519592 2.040000e-98 370.0
16 TraesCS5B01G357200 chr2B 96.063 127 4 1 438 563 476399667 476399793 6.070000e-49 206.0
17 TraesCS5B01G357200 chr2B 90.196 102 7 3 3723 3823 197957553 197957454 3.760000e-26 130.0
18 TraesCS5B01G357200 chr4A 94.554 202 9 2 45 245 44453528 44453328 1.250000e-80 311.0
19 TraesCS5B01G357200 chr4A 93.564 202 11 2 45 245 44289309 44289109 2.710000e-77 300.0
20 TraesCS5B01G357200 chr4A 92.574 202 13 2 45 245 44266105 44265905 5.860000e-74 289.0
21 TraesCS5B01G357200 chr4A 92.473 93 7 0 3720 3812 9380764 9380672 2.910000e-27 134.0
22 TraesCS5B01G357200 chr3B 97.790 181 3 1 255 435 86133981 86134160 1.250000e-80 311.0
23 TraesCS5B01G357200 chr3B 97.207 179 4 1 256 434 730746022 730745845 7.530000e-78 302.0
24 TraesCS5B01G357200 chr3B 94.815 135 5 2 438 571 797669828 797669961 4.700000e-50 209.0
25 TraesCS5B01G357200 chr7B 96.133 181 7 0 255 435 40054645 40054825 3.500000e-76 296.0
26 TraesCS5B01G357200 chr7B 96.032 126 4 1 438 562 443081969 443082094 2.180000e-48 204.0
27 TraesCS5B01G357200 chr7A 91.626 203 15 2 44 245 622393135 622393336 3.530000e-71 279.0
28 TraesCS5B01G357200 chr7A 91.837 98 7 1 3712 3809 285700 285604 8.080000e-28 135.0
29 TraesCS5B01G357200 chr2A 90.521 211 18 2 36 245 368269334 368269543 1.270000e-70 278.0
30 TraesCS5B01G357200 chr2A 85.542 83 8 3 500 579 527781963 527782044 2.970000e-12 84.2
31 TraesCS5B01G357200 chr4B 91.089 202 17 1 45 245 39123167 39123368 5.900000e-69 272.0
32 TraesCS5B01G357200 chr1A 91.133 203 14 4 44 245 429490938 429490739 5.900000e-69 272.0
33 TraesCS5B01G357200 chr6D 89.947 189 10 1 255 443 16935475 16935654 7.750000e-58 235.0
34 TraesCS5B01G357200 chr1D 91.716 169 14 0 255 423 73819184 73819016 7.750000e-58 235.0
35 TraesCS5B01G357200 chr7D 96.032 126 4 1 438 562 548476454 548476579 2.180000e-48 204.0
36 TraesCS5B01G357200 chr7D 92.754 138 6 4 438 572 298354189 298354053 3.660000e-46 196.0
37 TraesCS5B01G357200 chr7D 95.455 88 4 0 3723 3810 470204877 470204790 1.740000e-29 141.0
38 TraesCS5B01G357200 chr7D 92.553 94 7 0 3716 3809 1261043 1260950 8.080000e-28 135.0
39 TraesCS5B01G357200 chr1B 96.032 126 4 1 438 562 171043100 171042975 2.180000e-48 204.0
40 TraesCS5B01G357200 chr1B 92.105 114 8 1 1626 1738 57811137 57811024 4.800000e-35 159.0
41 TraesCS5B01G357200 chr6B 90.265 113 11 0 1626 1738 688752059 688752171 1.040000e-31 148.0
42 TraesCS5B01G357200 chr3D 95.455 88 4 0 3722 3809 610206668 610206581 1.740000e-29 141.0
43 TraesCS5B01G357200 chr3D 92.000 100 5 3 3724 3822 22679145 22679048 2.250000e-28 137.0
44 TraesCS5B01G357200 chr3D 92.000 100 5 3 3724 3822 22767813 22767910 2.250000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G357200 chr5B 536586125 536590755 4630 True 8552 8552 100.0000 1 4631 1 chr5B.!!$R1 4630
1 TraesCS5B01G357200 chr5D 441019465 441023529 4064 True 6331 6331 94.7990 563 4631 1 chr5D.!!$R1 4068
2 TraesCS5B01G357200 chr5A 557126130 557130126 3996 True 2990 4927 92.2675 575 4631 2 chr5A.!!$R2 4056
3 TraesCS5B01G357200 chr4D 503795908 503796429 521 True 793 793 94.0610 1370 1891 1 chr4D.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 521 0.037697 TGACGGTCGAGATGGTTTGG 60.038 55.0 3.34 0.0 0.00 3.28 F
536 537 0.039618 TTGGATCTGCCCTTTGGGTC 59.960 55.0 4.42 0.0 46.51 4.46 F
538 539 0.332972 GGATCTGCCCTTTGGGTCTT 59.667 55.0 4.42 0.0 46.51 3.01 F
1901 1910 0.686112 ACTGCTGCCTCCTCCTCTAC 60.686 60.0 0.00 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1416 0.677098 CCACCTCGACGGAGAAGAGA 60.677 60.000 7.76 0.0 43.27 3.10 R
2343 2358 0.749649 ACTCTAGCGCCTTGATCTGG 59.250 55.000 2.29 0.0 0.00 3.86 R
2358 2373 1.515020 GCCGAGCATCAGTGACTCT 59.485 57.895 0.00 0.0 33.17 3.24 R
3798 3819 0.325765 ACTTCCTGCTACTCCCTCCC 60.326 60.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.978010 AGTTGAAAGGTGGCGCGG 60.978 61.111 8.83 0.00 0.00 6.46
18 19 2.975799 GTTGAAAGGTGGCGCGGA 60.976 61.111 8.83 0.00 0.00 5.54
19 20 2.203224 TTGAAAGGTGGCGCGGAA 60.203 55.556 8.83 0.00 0.00 4.30
20 21 2.548295 TTGAAAGGTGGCGCGGAAC 61.548 57.895 8.83 0.00 0.00 3.62
33 34 2.355115 GGAACGGGGCAATCTGGT 59.645 61.111 0.00 0.00 0.00 4.00
34 35 1.749258 GGAACGGGGCAATCTGGTC 60.749 63.158 0.00 0.00 0.00 4.02
35 36 1.299976 GAACGGGGCAATCTGGTCT 59.700 57.895 0.00 0.00 0.00 3.85
36 37 0.322546 GAACGGGGCAATCTGGTCTT 60.323 55.000 0.00 0.00 0.00 3.01
37 38 0.112412 AACGGGGCAATCTGGTCTTT 59.888 50.000 0.00 0.00 0.00 2.52
38 39 0.112412 ACGGGGCAATCTGGTCTTTT 59.888 50.000 0.00 0.00 0.00 2.27
39 40 0.811281 CGGGGCAATCTGGTCTTTTC 59.189 55.000 0.00 0.00 0.00 2.29
40 41 1.886222 CGGGGCAATCTGGTCTTTTCA 60.886 52.381 0.00 0.00 0.00 2.69
41 42 2.460669 GGGGCAATCTGGTCTTTTCAT 58.539 47.619 0.00 0.00 0.00 2.57
42 43 3.631250 GGGGCAATCTGGTCTTTTCATA 58.369 45.455 0.00 0.00 0.00 2.15
43 44 4.218312 GGGGCAATCTGGTCTTTTCATAT 58.782 43.478 0.00 0.00 0.00 1.78
44 45 5.385198 GGGGCAATCTGGTCTTTTCATATA 58.615 41.667 0.00 0.00 0.00 0.86
45 46 5.241728 GGGGCAATCTGGTCTTTTCATATAC 59.758 44.000 0.00 0.00 0.00 1.47
46 47 6.064717 GGGCAATCTGGTCTTTTCATATACT 58.935 40.000 0.00 0.00 0.00 2.12
47 48 7.224297 GGGCAATCTGGTCTTTTCATATACTA 58.776 38.462 0.00 0.00 0.00 1.82
48 49 7.389053 GGGCAATCTGGTCTTTTCATATACTAG 59.611 40.741 0.00 0.00 0.00 2.57
49 50 7.934120 GGCAATCTGGTCTTTTCATATACTAGT 59.066 37.037 0.00 0.00 0.00 2.57
50 51 9.982651 GCAATCTGGTCTTTTCATATACTAGTA 57.017 33.333 4.77 4.77 0.00 1.82
68 69 7.173863 ACTAGTAATAATGTACGTGCAATGC 57.826 36.000 11.22 0.00 0.00 3.56
69 70 6.759356 ACTAGTAATAATGTACGTGCAATGCA 59.241 34.615 11.22 2.72 35.60 3.96
85 86 7.555306 TGCAATGCACGTTTATATTAGGTAA 57.445 32.000 2.72 0.00 31.71 2.85
86 87 7.635423 TGCAATGCACGTTTATATTAGGTAAG 58.365 34.615 2.72 0.00 31.71 2.34
87 88 7.496263 TGCAATGCACGTTTATATTAGGTAAGA 59.504 33.333 2.72 0.00 31.71 2.10
88 89 8.504005 GCAATGCACGTTTATATTAGGTAAGAT 58.496 33.333 0.00 0.00 0.00 2.40
102 103 8.988064 ATTAGGTAAGATATATCTGTTGCACG 57.012 34.615 16.01 0.00 37.19 5.34
103 104 6.406692 AGGTAAGATATATCTGTTGCACGT 57.593 37.500 16.01 8.08 37.19 4.49
104 105 6.817184 AGGTAAGATATATCTGTTGCACGTT 58.183 36.000 16.01 0.00 37.19 3.99
105 106 6.701841 AGGTAAGATATATCTGTTGCACGTTG 59.298 38.462 16.01 0.00 37.19 4.10
106 107 5.991328 AAGATATATCTGTTGCACGTTGG 57.009 39.130 16.01 0.00 37.19 3.77
107 108 5.023533 AGATATATCTGTTGCACGTTGGT 57.976 39.130 14.60 0.00 35.42 3.67
108 109 6.156748 AGATATATCTGTTGCACGTTGGTA 57.843 37.500 14.60 0.00 35.42 3.25
109 110 6.759272 AGATATATCTGTTGCACGTTGGTAT 58.241 36.000 14.60 0.00 35.42 2.73
110 111 7.217200 AGATATATCTGTTGCACGTTGGTATT 58.783 34.615 14.60 0.00 35.42 1.89
111 112 7.715249 AGATATATCTGTTGCACGTTGGTATTT 59.285 33.333 14.60 0.00 35.42 1.40
112 113 3.617540 TCTGTTGCACGTTGGTATTTG 57.382 42.857 0.00 0.00 0.00 2.32
113 114 3.206964 TCTGTTGCACGTTGGTATTTGA 58.793 40.909 0.00 0.00 0.00 2.69
114 115 3.818210 TCTGTTGCACGTTGGTATTTGAT 59.182 39.130 0.00 0.00 0.00 2.57
115 116 4.998033 TCTGTTGCACGTTGGTATTTGATA 59.002 37.500 0.00 0.00 0.00 2.15
116 117 5.470437 TCTGTTGCACGTTGGTATTTGATAA 59.530 36.000 0.00 0.00 0.00 1.75
117 118 5.694816 TGTTGCACGTTGGTATTTGATAAG 58.305 37.500 0.00 0.00 0.00 1.73
118 119 5.470437 TGTTGCACGTTGGTATTTGATAAGA 59.530 36.000 0.00 0.00 0.00 2.10
119 120 6.150307 TGTTGCACGTTGGTATTTGATAAGAT 59.850 34.615 0.00 0.00 0.00 2.40
120 121 7.334671 TGTTGCACGTTGGTATTTGATAAGATA 59.665 33.333 0.00 0.00 0.00 1.98
121 122 8.342634 GTTGCACGTTGGTATTTGATAAGATAT 58.657 33.333 0.00 0.00 0.00 1.63
122 123 8.083462 TGCACGTTGGTATTTGATAAGATATC 57.917 34.615 0.00 0.00 0.00 1.63
123 124 7.713073 TGCACGTTGGTATTTGATAAGATATCA 59.287 33.333 5.32 0.00 0.00 2.15
124 125 8.556194 GCACGTTGGTATTTGATAAGATATCAA 58.444 33.333 5.32 8.36 36.37 2.57
149 150 1.455248 TTTTTCGCGGGAATGGTAGG 58.545 50.000 16.24 0.00 30.88 3.18
150 151 0.614294 TTTTCGCGGGAATGGTAGGA 59.386 50.000 16.24 0.00 30.88 2.94
151 152 0.834612 TTTCGCGGGAATGGTAGGAT 59.165 50.000 16.24 0.00 30.88 3.24
152 153 1.707106 TTCGCGGGAATGGTAGGATA 58.293 50.000 11.32 0.00 0.00 2.59
153 154 1.933021 TCGCGGGAATGGTAGGATAT 58.067 50.000 6.13 0.00 0.00 1.63
154 155 2.253610 TCGCGGGAATGGTAGGATATT 58.746 47.619 6.13 0.00 0.00 1.28
155 156 3.433343 TCGCGGGAATGGTAGGATATTA 58.567 45.455 6.13 0.00 0.00 0.98
156 157 3.833650 TCGCGGGAATGGTAGGATATTAA 59.166 43.478 6.13 0.00 0.00 1.40
157 158 4.468510 TCGCGGGAATGGTAGGATATTAAT 59.531 41.667 6.13 0.00 0.00 1.40
158 159 5.046159 TCGCGGGAATGGTAGGATATTAATT 60.046 40.000 6.13 0.00 0.00 1.40
159 160 6.154877 TCGCGGGAATGGTAGGATATTAATTA 59.845 38.462 6.13 0.00 0.00 1.40
160 161 6.257193 CGCGGGAATGGTAGGATATTAATTAC 59.743 42.308 0.00 0.00 0.00 1.89
161 162 7.107542 GCGGGAATGGTAGGATATTAATTACA 58.892 38.462 0.00 0.00 0.00 2.41
162 163 7.773690 GCGGGAATGGTAGGATATTAATTACAT 59.226 37.037 0.00 0.00 0.00 2.29
163 164 9.109393 CGGGAATGGTAGGATATTAATTACATG 57.891 37.037 0.00 0.00 0.00 3.21
164 165 9.408648 GGGAATGGTAGGATATTAATTACATGG 57.591 37.037 0.00 0.00 0.00 3.66
165 166 8.903820 GGAATGGTAGGATATTAATTACATGGC 58.096 37.037 0.00 0.00 0.00 4.40
166 167 9.461312 GAATGGTAGGATATTAATTACATGGCA 57.539 33.333 0.00 0.00 0.00 4.92
167 168 9.466497 AATGGTAGGATATTAATTACATGGCAG 57.534 33.333 0.00 0.00 0.00 4.85
168 169 8.213489 TGGTAGGATATTAATTACATGGCAGA 57.787 34.615 0.00 0.00 0.00 4.26
169 170 8.835734 TGGTAGGATATTAATTACATGGCAGAT 58.164 33.333 0.00 0.00 0.00 2.90
170 171 9.686683 GGTAGGATATTAATTACATGGCAGATT 57.313 33.333 0.00 0.00 0.00 2.40
173 174 9.812347 AGGATATTAATTACATGGCAGATTTCA 57.188 29.630 0.00 0.00 0.00 2.69
178 179 8.750515 TTAATTACATGGCAGATTTCATGAGA 57.249 30.769 9.84 0.00 42.25 3.27
179 180 7.834881 AATTACATGGCAGATTTCATGAGAT 57.165 32.000 9.84 0.00 42.25 2.75
180 181 8.929260 AATTACATGGCAGATTTCATGAGATA 57.071 30.769 9.84 0.00 42.25 1.98
181 182 7.974482 TTACATGGCAGATTTCATGAGATAG 57.026 36.000 9.84 0.00 42.25 2.08
182 183 6.183810 ACATGGCAGATTTCATGAGATAGA 57.816 37.500 9.84 0.00 42.25 1.98
183 184 6.231951 ACATGGCAGATTTCATGAGATAGAG 58.768 40.000 9.84 0.00 42.25 2.43
184 185 5.883685 TGGCAGATTTCATGAGATAGAGT 57.116 39.130 0.00 0.00 0.00 3.24
185 186 6.244552 TGGCAGATTTCATGAGATAGAGTT 57.755 37.500 0.00 0.00 0.00 3.01
186 187 7.365497 TGGCAGATTTCATGAGATAGAGTTA 57.635 36.000 0.00 0.00 0.00 2.24
187 188 7.795047 TGGCAGATTTCATGAGATAGAGTTAA 58.205 34.615 0.00 0.00 0.00 2.01
188 189 7.930325 TGGCAGATTTCATGAGATAGAGTTAAG 59.070 37.037 0.00 0.00 0.00 1.85
189 190 7.930865 GGCAGATTTCATGAGATAGAGTTAAGT 59.069 37.037 0.00 0.00 0.00 2.24
190 191 9.323985 GCAGATTTCATGAGATAGAGTTAAGTT 57.676 33.333 0.00 0.00 0.00 2.66
212 213 9.483916 AAGTTAAAACATGTTTATAACCAAGGC 57.516 29.630 28.88 16.97 32.71 4.35
213 214 8.643324 AGTTAAAACATGTTTATAACCAAGGCA 58.357 29.630 28.88 10.20 32.71 4.75
214 215 8.921670 GTTAAAACATGTTTATAACCAAGGCAG 58.078 33.333 23.53 0.00 31.63 4.85
215 216 6.664428 AAACATGTTTATAACCAAGGCAGT 57.336 33.333 22.10 0.00 0.00 4.40
216 217 5.643379 ACATGTTTATAACCAAGGCAGTG 57.357 39.130 0.00 0.00 0.00 3.66
217 218 4.462483 ACATGTTTATAACCAAGGCAGTGG 59.538 41.667 5.74 5.74 44.92 4.00
223 224 3.166434 CCAAGGCAGTGGTGGGTA 58.834 61.111 0.00 0.00 33.63 3.69
224 225 1.458486 CCAAGGCAGTGGTGGGTAA 59.542 57.895 0.00 0.00 33.63 2.85
225 226 0.039618 CCAAGGCAGTGGTGGGTAAT 59.960 55.000 0.00 0.00 33.63 1.89
226 227 1.549950 CCAAGGCAGTGGTGGGTAATT 60.550 52.381 0.00 0.00 33.63 1.40
227 228 2.291282 CCAAGGCAGTGGTGGGTAATTA 60.291 50.000 0.00 0.00 33.63 1.40
228 229 3.426615 CAAGGCAGTGGTGGGTAATTAA 58.573 45.455 0.00 0.00 0.00 1.40
229 230 3.818295 AGGCAGTGGTGGGTAATTAAA 57.182 42.857 0.00 0.00 0.00 1.52
230 231 3.697166 AGGCAGTGGTGGGTAATTAAAG 58.303 45.455 0.00 0.00 0.00 1.85
231 232 2.165641 GGCAGTGGTGGGTAATTAAAGC 59.834 50.000 0.00 0.00 0.00 3.51
232 233 2.159435 GCAGTGGTGGGTAATTAAAGCG 60.159 50.000 0.00 0.00 0.00 4.68
233 234 3.078837 CAGTGGTGGGTAATTAAAGCGT 58.921 45.455 0.00 0.00 0.00 5.07
234 235 3.504520 CAGTGGTGGGTAATTAAAGCGTT 59.495 43.478 0.00 0.00 0.00 4.84
235 236 4.696402 CAGTGGTGGGTAATTAAAGCGTTA 59.304 41.667 0.00 0.00 0.00 3.18
236 237 5.181622 CAGTGGTGGGTAATTAAAGCGTTAA 59.818 40.000 7.30 7.30 33.76 2.01
237 238 5.769162 AGTGGTGGGTAATTAAAGCGTTAAA 59.231 36.000 8.90 0.00 32.98 1.52
238 239 5.858049 GTGGTGGGTAATTAAAGCGTTAAAC 59.142 40.000 8.90 4.01 32.98 2.01
239 240 5.088068 GGTGGGTAATTAAAGCGTTAAACG 58.912 41.667 8.90 0.00 45.88 3.60
240 241 5.334802 GGTGGGTAATTAAAGCGTTAAACGT 60.335 40.000 8.90 1.17 44.73 3.99
241 242 5.564882 GTGGGTAATTAAAGCGTTAAACGTG 59.435 40.000 8.90 0.00 44.73 4.49
242 243 5.238214 TGGGTAATTAAAGCGTTAAACGTGT 59.762 36.000 8.90 0.00 44.73 4.49
243 244 6.142139 GGGTAATTAAAGCGTTAAACGTGTT 58.858 36.000 8.90 1.74 44.73 3.32
244 245 6.636447 GGGTAATTAAAGCGTTAAACGTGTTT 59.364 34.615 8.90 3.21 44.73 2.83
245 246 7.800847 GGGTAATTAAAGCGTTAAACGTGTTTA 59.199 33.333 8.90 1.18 44.73 2.01
246 247 9.163903 GGTAATTAAAGCGTTAAACGTGTTTAA 57.836 29.630 12.58 12.58 44.73 1.52
257 258 7.911362 TTAAACGTGTTTAACCAATAACAGC 57.089 32.000 12.58 0.00 39.34 4.40
258 259 5.502153 AACGTGTTTAACCAATAACAGCA 57.498 34.783 0.00 0.00 35.13 4.41
259 260 5.699097 ACGTGTTTAACCAATAACAGCAT 57.301 34.783 0.00 0.00 35.13 3.79
260 261 6.079424 ACGTGTTTAACCAATAACAGCATT 57.921 33.333 0.00 0.00 35.13 3.56
261 262 5.918011 ACGTGTTTAACCAATAACAGCATTG 59.082 36.000 0.00 0.00 35.13 2.82
262 263 5.918011 CGTGTTTAACCAATAACAGCATTGT 59.082 36.000 0.00 0.00 39.87 2.71
263 264 7.078851 CGTGTTTAACCAATAACAGCATTGTA 58.921 34.615 0.00 0.00 36.23 2.41
264 265 7.591795 CGTGTTTAACCAATAACAGCATTGTAA 59.408 33.333 0.00 0.00 36.23 2.41
265 266 9.250624 GTGTTTAACCAATAACAGCATTGTAAA 57.749 29.630 0.00 0.00 36.23 2.01
266 267 9.817809 TGTTTAACCAATAACAGCATTGTAAAA 57.182 25.926 0.00 0.00 36.23 1.52
269 270 9.906660 TTAACCAATAACAGCATTGTAAAAGAG 57.093 29.630 0.00 0.00 36.23 2.85
270 271 7.759489 ACCAATAACAGCATTGTAAAAGAGA 57.241 32.000 0.00 0.00 36.23 3.10
271 272 8.177119 ACCAATAACAGCATTGTAAAAGAGAA 57.823 30.769 0.00 0.00 36.23 2.87
272 273 8.299570 ACCAATAACAGCATTGTAAAAGAGAAG 58.700 33.333 0.00 0.00 36.23 2.85
273 274 7.274250 CCAATAACAGCATTGTAAAAGAGAAGC 59.726 37.037 0.00 0.00 36.23 3.86
274 275 5.772825 AACAGCATTGTAAAAGAGAAGCA 57.227 34.783 0.00 0.00 36.23 3.91
275 276 5.772825 ACAGCATTGTAAAAGAGAAGCAA 57.227 34.783 0.00 0.00 35.25 3.91
276 277 6.147864 ACAGCATTGTAAAAGAGAAGCAAA 57.852 33.333 0.00 0.00 35.25 3.68
277 278 5.979517 ACAGCATTGTAAAAGAGAAGCAAAC 59.020 36.000 0.00 0.00 35.25 2.93
278 279 6.183360 ACAGCATTGTAAAAGAGAAGCAAACT 60.183 34.615 0.00 0.00 35.25 2.66
279 280 6.361748 CAGCATTGTAAAAGAGAAGCAAACTC 59.638 38.462 0.00 0.00 34.95 3.01
280 281 6.264067 AGCATTGTAAAAGAGAAGCAAACTCT 59.736 34.615 0.00 0.00 45.13 3.24
281 282 6.361748 GCATTGTAAAAGAGAAGCAAACTCTG 59.638 38.462 7.81 0.00 42.85 3.35
282 283 7.420800 CATTGTAAAAGAGAAGCAAACTCTGT 58.579 34.615 7.81 0.99 42.85 3.41
283 284 8.559536 CATTGTAAAAGAGAAGCAAACTCTGTA 58.440 33.333 7.81 2.78 42.85 2.74
284 285 7.715265 TGTAAAAGAGAAGCAAACTCTGTAG 57.285 36.000 7.81 0.00 42.85 2.74
285 286 5.681337 AAAAGAGAAGCAAACTCTGTAGC 57.319 39.130 7.81 0.00 42.85 3.58
286 287 3.326836 AGAGAAGCAAACTCTGTAGCC 57.673 47.619 6.55 0.00 42.20 3.93
287 288 2.027653 AGAGAAGCAAACTCTGTAGCCC 60.028 50.000 6.55 0.00 42.20 5.19
288 289 1.699634 AGAAGCAAACTCTGTAGCCCA 59.300 47.619 0.00 0.00 0.00 5.36
289 290 2.307098 AGAAGCAAACTCTGTAGCCCAT 59.693 45.455 0.00 0.00 0.00 4.00
290 291 2.119801 AGCAAACTCTGTAGCCCATG 57.880 50.000 0.00 0.00 0.00 3.66
291 292 1.630369 AGCAAACTCTGTAGCCCATGA 59.370 47.619 0.00 0.00 0.00 3.07
292 293 2.040278 AGCAAACTCTGTAGCCCATGAA 59.960 45.455 0.00 0.00 0.00 2.57
293 294 3.019564 GCAAACTCTGTAGCCCATGAAT 58.980 45.455 0.00 0.00 0.00 2.57
294 295 3.445096 GCAAACTCTGTAGCCCATGAATT 59.555 43.478 0.00 0.00 0.00 2.17
295 296 4.640201 GCAAACTCTGTAGCCCATGAATTA 59.360 41.667 0.00 0.00 0.00 1.40
296 297 5.220931 GCAAACTCTGTAGCCCATGAATTAG 60.221 44.000 0.00 0.00 0.00 1.73
297 298 4.078639 ACTCTGTAGCCCATGAATTAGC 57.921 45.455 0.00 0.00 0.00 3.09
298 299 3.455910 ACTCTGTAGCCCATGAATTAGCA 59.544 43.478 0.00 0.00 0.00 3.49
299 300 4.063689 CTCTGTAGCCCATGAATTAGCAG 58.936 47.826 0.00 0.00 0.00 4.24
300 301 3.455910 TCTGTAGCCCATGAATTAGCAGT 59.544 43.478 0.00 0.00 0.00 4.40
301 302 4.080356 TCTGTAGCCCATGAATTAGCAGTT 60.080 41.667 0.00 0.00 0.00 3.16
302 303 5.130311 TCTGTAGCCCATGAATTAGCAGTTA 59.870 40.000 0.00 0.00 0.00 2.24
303 304 5.940617 TGTAGCCCATGAATTAGCAGTTAT 58.059 37.500 0.00 0.00 0.00 1.89
304 305 7.016170 TCTGTAGCCCATGAATTAGCAGTTATA 59.984 37.037 0.00 0.00 0.00 0.98
305 306 7.161404 TGTAGCCCATGAATTAGCAGTTATAG 58.839 38.462 0.00 0.00 0.00 1.31
306 307 5.564550 AGCCCATGAATTAGCAGTTATAGG 58.435 41.667 0.00 0.00 0.00 2.57
307 308 4.156739 GCCCATGAATTAGCAGTTATAGGC 59.843 45.833 0.00 0.00 0.00 3.93
308 309 4.702131 CCCATGAATTAGCAGTTATAGGCC 59.298 45.833 0.00 0.00 0.00 5.19
309 310 4.393062 CCATGAATTAGCAGTTATAGGCCG 59.607 45.833 0.00 0.00 0.00 6.13
310 311 4.682778 TGAATTAGCAGTTATAGGCCGT 57.317 40.909 0.00 0.00 0.00 5.68
311 312 5.031066 TGAATTAGCAGTTATAGGCCGTT 57.969 39.130 0.00 0.00 0.00 4.44
312 313 5.433526 TGAATTAGCAGTTATAGGCCGTTT 58.566 37.500 0.00 0.00 0.00 3.60
313 314 5.295787 TGAATTAGCAGTTATAGGCCGTTTG 59.704 40.000 0.00 0.00 0.00 2.93
314 315 2.781681 AGCAGTTATAGGCCGTTTGT 57.218 45.000 0.00 0.00 0.00 2.83
315 316 2.356135 AGCAGTTATAGGCCGTTTGTG 58.644 47.619 0.00 0.00 0.00 3.33
316 317 2.081462 GCAGTTATAGGCCGTTTGTGT 58.919 47.619 0.00 0.00 0.00 3.72
317 318 2.486592 GCAGTTATAGGCCGTTTGTGTT 59.513 45.455 0.00 0.00 0.00 3.32
318 319 3.057806 GCAGTTATAGGCCGTTTGTGTTT 60.058 43.478 0.00 0.00 0.00 2.83
319 320 4.154556 GCAGTTATAGGCCGTTTGTGTTTA 59.845 41.667 0.00 0.00 0.00 2.01
320 321 5.624292 CAGTTATAGGCCGTTTGTGTTTAC 58.376 41.667 0.00 0.00 0.00 2.01
321 322 4.696877 AGTTATAGGCCGTTTGTGTTTACC 59.303 41.667 0.00 0.00 0.00 2.85
322 323 1.894881 TAGGCCGTTTGTGTTTACCC 58.105 50.000 0.00 0.00 0.00 3.69
323 324 0.106619 AGGCCGTTTGTGTTTACCCA 60.107 50.000 0.00 0.00 0.00 4.51
324 325 0.745468 GGCCGTTTGTGTTTACCCAA 59.255 50.000 0.00 0.00 0.00 4.12
325 326 1.341852 GGCCGTTTGTGTTTACCCAAT 59.658 47.619 0.00 0.00 0.00 3.16
326 327 2.557490 GGCCGTTTGTGTTTACCCAATA 59.443 45.455 0.00 0.00 0.00 1.90
327 328 3.005578 GGCCGTTTGTGTTTACCCAATAA 59.994 43.478 0.00 0.00 0.00 1.40
328 329 3.982701 GCCGTTTGTGTTTACCCAATAAC 59.017 43.478 0.00 0.00 0.00 1.89
329 330 4.499357 GCCGTTTGTGTTTACCCAATAACA 60.499 41.667 0.00 0.00 32.21 2.41
330 331 5.216648 CCGTTTGTGTTTACCCAATAACAG 58.783 41.667 0.00 0.00 35.13 3.16
331 332 4.677832 CGTTTGTGTTTACCCAATAACAGC 59.322 41.667 0.00 0.00 35.13 4.40
332 333 5.593010 GTTTGTGTTTACCCAATAACAGCA 58.407 37.500 0.00 0.00 35.13 4.41
333 334 6.220201 GTTTGTGTTTACCCAATAACAGCAT 58.780 36.000 0.00 0.00 35.13 3.79
334 335 6.412362 TTGTGTTTACCCAATAACAGCATT 57.588 33.333 0.00 0.00 35.13 3.56
335 336 7.526142 TTGTGTTTACCCAATAACAGCATTA 57.474 32.000 0.00 0.00 35.13 1.90
336 337 7.151999 TGTGTTTACCCAATAACAGCATTAG 57.848 36.000 0.00 0.00 35.13 1.73
337 338 6.033966 GTGTTTACCCAATAACAGCATTAGC 58.966 40.000 0.00 0.00 42.56 3.09
351 352 3.539604 GCATTAGCTGGAACTCTGATGT 58.460 45.455 0.00 0.00 37.91 3.06
352 353 4.697514 GCATTAGCTGGAACTCTGATGTA 58.302 43.478 0.00 0.00 37.91 2.29
353 354 4.509600 GCATTAGCTGGAACTCTGATGTAC 59.490 45.833 0.00 0.00 37.91 2.90
354 355 4.737855 TTAGCTGGAACTCTGATGTACC 57.262 45.455 0.00 0.00 0.00 3.34
355 356 1.478510 AGCTGGAACTCTGATGTACCG 59.521 52.381 0.00 0.00 0.00 4.02
356 357 1.927895 CTGGAACTCTGATGTACCGC 58.072 55.000 0.00 0.00 0.00 5.68
357 358 0.535335 TGGAACTCTGATGTACCGCC 59.465 55.000 0.00 0.00 0.00 6.13
358 359 0.179081 GGAACTCTGATGTACCGCCC 60.179 60.000 0.00 0.00 0.00 6.13
359 360 0.179081 GAACTCTGATGTACCGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
360 361 0.907704 AACTCTGATGTACCGCCCCA 60.908 55.000 0.00 0.00 0.00 4.96
361 362 0.907704 ACTCTGATGTACCGCCCCAA 60.908 55.000 0.00 0.00 0.00 4.12
362 363 0.179073 CTCTGATGTACCGCCCCAAG 60.179 60.000 0.00 0.00 0.00 3.61
363 364 0.907704 TCTGATGTACCGCCCCAAGT 60.908 55.000 0.00 0.00 0.00 3.16
364 365 0.744414 CTGATGTACCGCCCCAAGTG 60.744 60.000 0.00 0.00 0.00 3.16
373 374 4.275781 CCCCAAGTGGCAGTTTGT 57.724 55.556 4.45 0.00 0.00 2.83
374 375 1.741525 CCCCAAGTGGCAGTTTGTG 59.258 57.895 4.45 0.00 0.00 3.33
375 376 1.042559 CCCCAAGTGGCAGTTTGTGT 61.043 55.000 4.45 0.00 0.00 3.72
376 377 0.385390 CCCAAGTGGCAGTTTGTGTC 59.615 55.000 4.45 0.00 0.00 3.67
377 378 1.392589 CCAAGTGGCAGTTTGTGTCT 58.607 50.000 4.45 0.00 0.00 3.41
378 379 1.334869 CCAAGTGGCAGTTTGTGTCTC 59.665 52.381 4.45 0.00 0.00 3.36
379 380 2.016318 CAAGTGGCAGTTTGTGTCTCA 58.984 47.619 4.45 0.00 0.00 3.27
380 381 1.959042 AGTGGCAGTTTGTGTCTCAG 58.041 50.000 0.00 0.00 0.00 3.35
381 382 0.947244 GTGGCAGTTTGTGTCTCAGG 59.053 55.000 0.00 0.00 0.00 3.86
382 383 0.819259 TGGCAGTTTGTGTCTCAGGC 60.819 55.000 0.00 0.00 0.00 4.85
383 384 1.571460 GCAGTTTGTGTCTCAGGCG 59.429 57.895 0.00 0.00 0.00 5.52
384 385 0.880278 GCAGTTTGTGTCTCAGGCGA 60.880 55.000 0.00 0.00 0.00 5.54
385 386 1.800805 CAGTTTGTGTCTCAGGCGAT 58.199 50.000 0.00 0.00 0.00 4.58
386 387 2.930887 GCAGTTTGTGTCTCAGGCGATA 60.931 50.000 0.00 0.00 0.00 2.92
387 388 3.525537 CAGTTTGTGTCTCAGGCGATAT 58.474 45.455 0.00 0.00 0.00 1.63
388 389 3.308053 CAGTTTGTGTCTCAGGCGATATG 59.692 47.826 0.00 0.00 0.00 1.78
389 390 1.939974 TTGTGTCTCAGGCGATATGC 58.060 50.000 0.00 0.00 45.38 3.14
404 405 2.666207 TGCCCGAGCACCGTTAAT 59.334 55.556 0.00 0.00 46.52 1.40
405 406 1.003112 TGCCCGAGCACCGTTAATT 60.003 52.632 0.00 0.00 46.52 1.40
406 407 0.606944 TGCCCGAGCACCGTTAATTT 60.607 50.000 0.00 0.00 46.52 1.82
407 408 1.338864 TGCCCGAGCACCGTTAATTTA 60.339 47.619 0.00 0.00 46.52 1.40
408 409 1.944709 GCCCGAGCACCGTTAATTTAT 59.055 47.619 0.00 0.00 39.53 1.40
409 410 3.132925 GCCCGAGCACCGTTAATTTATA 58.867 45.455 0.00 0.00 39.53 0.98
410 411 3.560896 GCCCGAGCACCGTTAATTTATAA 59.439 43.478 0.00 0.00 39.53 0.98
411 412 4.035441 GCCCGAGCACCGTTAATTTATAAA 59.965 41.667 0.00 0.00 39.53 1.40
412 413 5.744490 CCCGAGCACCGTTAATTTATAAAG 58.256 41.667 3.94 0.00 36.31 1.85
413 414 5.202640 CCGAGCACCGTTAATTTATAAAGC 58.797 41.667 3.94 0.00 36.31 3.51
414 415 5.007332 CCGAGCACCGTTAATTTATAAAGCT 59.993 40.000 3.94 4.28 36.31 3.74
415 416 6.127403 CGAGCACCGTTAATTTATAAAGCTC 58.873 40.000 16.16 16.16 40.81 4.09
416 417 6.018994 CGAGCACCGTTAATTTATAAAGCTCT 60.019 38.462 20.42 4.59 41.73 4.09
417 418 7.016361 AGCACCGTTAATTTATAAAGCTCTG 57.984 36.000 3.94 0.00 0.00 3.35
418 419 5.681543 GCACCGTTAATTTATAAAGCTCTGC 59.318 40.000 3.94 1.28 0.00 4.26
419 420 6.458342 GCACCGTTAATTTATAAAGCTCTGCT 60.458 38.462 3.94 0.00 42.56 4.24
430 431 2.664402 AGCTCTGCTTTCCCTCAAAA 57.336 45.000 0.00 0.00 33.89 2.44
431 432 2.949447 AGCTCTGCTTTCCCTCAAAAA 58.051 42.857 0.00 0.00 33.89 1.94
455 456 7.974243 AAAAATTTAGAGCGTTAAACGTGTT 57.026 28.000 0.00 0.00 44.73 3.32
456 457 7.974243 AAAATTTAGAGCGTTAAACGTGTTT 57.026 28.000 3.21 3.21 44.73 2.83
457 458 9.500864 AAAAATTTAGAGCGTTAAACGTGTTTA 57.499 25.926 1.18 1.18 44.73 2.01
458 459 8.703823 AAATTTAGAGCGTTAAACGTGTTTAG 57.296 30.769 5.45 0.00 44.73 1.85
459 460 6.826893 TTTAGAGCGTTAAACGTGTTTAGT 57.173 33.333 5.45 0.00 44.73 2.24
460 461 4.703899 AGAGCGTTAAACGTGTTTAGTG 57.296 40.909 5.45 4.19 44.73 2.74
461 462 3.060070 AGAGCGTTAAACGTGTTTAGTGC 60.060 43.478 16.65 16.65 44.73 4.40
462 463 2.867975 AGCGTTAAACGTGTTTAGTGCT 59.132 40.909 19.29 19.29 44.73 4.40
463 464 3.060070 AGCGTTAAACGTGTTTAGTGCTC 60.060 43.478 19.29 6.67 44.73 4.26
464 465 3.302610 GCGTTAAACGTGTTTAGTGCTCA 60.303 43.478 16.91 0.00 44.73 4.26
465 466 4.782822 GCGTTAAACGTGTTTAGTGCTCAA 60.783 41.667 16.91 0.00 44.73 3.02
466 467 4.663091 CGTTAAACGTGTTTAGTGCTCAAC 59.337 41.667 5.45 1.42 36.52 3.18
467 468 5.561993 GTTAAACGTGTTTAGTGCTCAACA 58.438 37.500 5.45 0.00 36.52 3.33
468 469 4.893424 AAACGTGTTTAGTGCTCAACAT 57.107 36.364 0.00 0.00 35.40 2.71
469 470 4.893424 AACGTGTTTAGTGCTCAACATT 57.107 36.364 2.80 0.00 35.40 2.71
470 471 4.209452 ACGTGTTTAGTGCTCAACATTG 57.791 40.909 2.80 2.48 35.40 2.82
471 472 3.003275 ACGTGTTTAGTGCTCAACATTGG 59.997 43.478 2.80 0.10 35.40 3.16
472 473 3.249799 CGTGTTTAGTGCTCAACATTGGA 59.750 43.478 2.80 0.00 35.40 3.53
473 474 4.611355 CGTGTTTAGTGCTCAACATTGGAG 60.611 45.833 2.80 0.00 35.40 3.86
482 483 4.424061 CTCAACATTGGAGCGATTTGAA 57.576 40.909 0.00 0.00 0.00 2.69
483 484 4.159377 TCAACATTGGAGCGATTTGAAC 57.841 40.909 0.00 0.00 0.00 3.18
484 485 3.567585 TCAACATTGGAGCGATTTGAACA 59.432 39.130 0.00 0.00 0.00 3.18
485 486 3.837213 ACATTGGAGCGATTTGAACAG 57.163 42.857 0.00 0.00 0.00 3.16
486 487 2.095059 ACATTGGAGCGATTTGAACAGC 60.095 45.455 0.00 0.00 0.00 4.40
487 488 1.896220 TTGGAGCGATTTGAACAGCT 58.104 45.000 0.00 0.00 43.33 4.24
489 490 3.865914 GAGCGATTTGAACAGCTCG 57.134 52.632 0.43 0.00 45.08 5.03
490 491 1.350193 GAGCGATTTGAACAGCTCGA 58.650 50.000 0.43 0.00 45.08 4.04
491 492 1.929836 GAGCGATTTGAACAGCTCGAT 59.070 47.619 0.43 5.73 45.08 3.59
492 493 3.116300 GAGCGATTTGAACAGCTCGATA 58.884 45.455 0.43 0.00 45.08 2.92
493 494 3.521560 AGCGATTTGAACAGCTCGATAA 58.478 40.909 10.57 0.00 34.48 1.75
494 495 3.307242 AGCGATTTGAACAGCTCGATAAC 59.693 43.478 10.57 0.00 34.48 1.89
495 496 3.062099 GCGATTTGAACAGCTCGATAACA 59.938 43.478 10.57 0.00 33.07 2.41
496 497 4.260375 GCGATTTGAACAGCTCGATAACAT 60.260 41.667 10.57 0.00 33.07 2.71
497 498 5.193216 CGATTTGAACAGCTCGATAACATG 58.807 41.667 0.00 0.00 33.07 3.21
498 499 5.005682 CGATTTGAACAGCTCGATAACATGA 59.994 40.000 0.00 0.00 33.07 3.07
499 500 6.292542 CGATTTGAACAGCTCGATAACATGAT 60.293 38.462 0.00 0.00 33.07 2.45
500 501 6.741992 TTTGAACAGCTCGATAACATGATT 57.258 33.333 0.00 0.00 0.00 2.57
501 502 6.741992 TTGAACAGCTCGATAACATGATTT 57.258 33.333 0.00 0.00 0.00 2.17
502 503 6.110543 TGAACAGCTCGATAACATGATTTG 57.889 37.500 0.00 0.00 0.00 2.32
503 504 5.874261 TGAACAGCTCGATAACATGATTTGA 59.126 36.000 0.00 0.00 0.00 2.69
504 505 5.725110 ACAGCTCGATAACATGATTTGAC 57.275 39.130 0.00 0.00 0.00 3.18
505 506 4.268644 ACAGCTCGATAACATGATTTGACG 59.731 41.667 0.00 0.00 0.00 4.35
506 507 3.804325 AGCTCGATAACATGATTTGACGG 59.196 43.478 0.00 0.00 0.00 4.79
507 508 3.555956 GCTCGATAACATGATTTGACGGT 59.444 43.478 0.00 0.00 0.00 4.83
508 509 4.318121 GCTCGATAACATGATTTGACGGTC 60.318 45.833 0.00 0.00 0.00 4.79
509 510 3.794564 TCGATAACATGATTTGACGGTCG 59.205 43.478 0.00 0.00 0.00 4.79
510 511 3.794564 CGATAACATGATTTGACGGTCGA 59.205 43.478 0.00 0.00 0.00 4.20
511 512 4.085568 CGATAACATGATTTGACGGTCGAG 60.086 45.833 0.00 0.00 0.00 4.04
512 513 3.313012 AACATGATTTGACGGTCGAGA 57.687 42.857 0.00 0.00 0.00 4.04
513 514 3.526931 ACATGATTTGACGGTCGAGAT 57.473 42.857 0.00 0.00 0.00 2.75
514 515 3.190079 ACATGATTTGACGGTCGAGATG 58.810 45.455 0.00 7.81 0.00 2.90
515 516 2.293677 TGATTTGACGGTCGAGATGG 57.706 50.000 3.34 0.00 0.00 3.51
516 517 1.548719 TGATTTGACGGTCGAGATGGT 59.451 47.619 3.34 0.00 0.00 3.55
517 518 2.028476 TGATTTGACGGTCGAGATGGTT 60.028 45.455 3.34 0.00 0.00 3.67
518 519 2.536761 TTTGACGGTCGAGATGGTTT 57.463 45.000 3.34 0.00 0.00 3.27
519 520 1.790755 TTGACGGTCGAGATGGTTTG 58.209 50.000 3.34 0.00 0.00 2.93
520 521 0.037697 TGACGGTCGAGATGGTTTGG 60.038 55.000 3.34 0.00 0.00 3.28
521 522 0.245539 GACGGTCGAGATGGTTTGGA 59.754 55.000 0.00 0.00 0.00 3.53
522 523 0.902531 ACGGTCGAGATGGTTTGGAT 59.097 50.000 0.00 0.00 0.00 3.41
523 524 1.134788 ACGGTCGAGATGGTTTGGATC 60.135 52.381 0.00 0.00 0.00 3.36
524 525 1.137086 CGGTCGAGATGGTTTGGATCT 59.863 52.381 0.00 0.00 32.63 2.75
525 526 2.555199 GGTCGAGATGGTTTGGATCTG 58.445 52.381 0.00 0.00 29.97 2.90
526 527 1.936547 GTCGAGATGGTTTGGATCTGC 59.063 52.381 0.00 0.00 29.97 4.26
527 528 1.134401 TCGAGATGGTTTGGATCTGCC 60.134 52.381 0.00 0.00 29.97 4.85
528 529 1.685148 GAGATGGTTTGGATCTGCCC 58.315 55.000 0.00 0.00 34.97 5.36
529 530 1.213926 GAGATGGTTTGGATCTGCCCT 59.786 52.381 0.00 0.00 34.97 5.19
530 531 1.642762 AGATGGTTTGGATCTGCCCTT 59.357 47.619 0.00 0.00 34.97 3.95
531 532 2.043526 AGATGGTTTGGATCTGCCCTTT 59.956 45.455 0.00 0.00 34.97 3.11
532 533 1.631405 TGGTTTGGATCTGCCCTTTG 58.369 50.000 0.00 0.00 34.97 2.77
533 534 0.897621 GGTTTGGATCTGCCCTTTGG 59.102 55.000 0.00 0.00 34.97 3.28
535 536 0.486879 TTTGGATCTGCCCTTTGGGT 59.513 50.000 4.42 0.00 46.51 4.51
536 537 0.039618 TTGGATCTGCCCTTTGGGTC 59.960 55.000 4.42 0.00 46.51 4.46
537 538 0.846427 TGGATCTGCCCTTTGGGTCT 60.846 55.000 4.42 0.00 46.51 3.85
538 539 0.332972 GGATCTGCCCTTTGGGTCTT 59.667 55.000 4.42 0.00 46.51 3.01
539 540 1.272704 GGATCTGCCCTTTGGGTCTTT 60.273 52.381 4.42 0.00 46.51 2.52
540 541 2.529632 GATCTGCCCTTTGGGTCTTTT 58.470 47.619 4.42 0.00 46.51 2.27
541 542 2.470057 TCTGCCCTTTGGGTCTTTTT 57.530 45.000 4.42 0.00 46.51 1.94
542 543 3.603965 TCTGCCCTTTGGGTCTTTTTA 57.396 42.857 4.42 0.00 46.51 1.52
543 544 4.126520 TCTGCCCTTTGGGTCTTTTTAT 57.873 40.909 4.42 0.00 46.51 1.40
544 545 5.263872 TCTGCCCTTTGGGTCTTTTTATA 57.736 39.130 4.42 0.00 46.51 0.98
545 546 5.837829 TCTGCCCTTTGGGTCTTTTTATAT 58.162 37.500 4.42 0.00 46.51 0.86
546 547 6.260663 TCTGCCCTTTGGGTCTTTTTATATT 58.739 36.000 4.42 0.00 46.51 1.28
547 548 6.154363 TCTGCCCTTTGGGTCTTTTTATATTG 59.846 38.462 4.42 0.00 46.51 1.90
548 549 5.188751 TGCCCTTTGGGTCTTTTTATATTGG 59.811 40.000 4.42 0.00 46.51 3.16
549 550 5.188948 GCCCTTTGGGTCTTTTTATATTGGT 59.811 40.000 4.42 0.00 46.51 3.67
550 551 6.381707 GCCCTTTGGGTCTTTTTATATTGGTA 59.618 38.462 4.42 0.00 46.51 3.25
551 552 7.070696 GCCCTTTGGGTCTTTTTATATTGGTAT 59.929 37.037 4.42 0.00 46.51 2.73
552 553 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
606 608 8.934825 GCTTAGAGCATTATCCTCTAAAATCTG 58.065 37.037 7.01 0.00 45.90 2.90
700 702 4.712873 CGCGAAACCAACGACCGC 62.713 66.667 0.00 0.00 42.11 5.68
724 726 1.421485 CACCACGAGCTCAAATCGC 59.579 57.895 15.40 0.00 43.91 4.58
951 957 3.635510 GCTGGCTAGCTAGGTGGT 58.364 61.111 27.12 0.00 46.57 4.16
1135 1141 2.437895 TCGTCGGCGAGGATGTCT 60.438 61.111 26.32 0.00 42.81 3.41
1197 1203 3.576356 CGCCGCATGTCCATGACC 61.576 66.667 11.35 0.00 41.20 4.02
1632 1638 2.260434 CCTCCGGCGAAGTTCGAA 59.740 61.111 28.66 9.33 43.74 3.71
1638 1644 2.356673 GCGAAGTTCGAACCCCGT 60.357 61.111 28.66 13.96 43.74 5.28
1901 1910 0.686112 ACTGCTGCCTCCTCCTCTAC 60.686 60.000 0.00 0.00 0.00 2.59
1902 1911 1.381872 TGCTGCCTCCTCCTCTACC 60.382 63.158 0.00 0.00 0.00 3.18
2082 2091 3.801997 CCCGAGCCCAAGCAGGAT 61.802 66.667 0.00 0.00 43.56 3.24
2097 2106 1.337703 CAGGATCAGAAGAGAGAGCCG 59.662 57.143 0.00 0.00 44.72 5.52
2101 2110 1.034838 TCAGAAGAGAGAGCCGGAGC 61.035 60.000 5.05 0.00 40.32 4.70
2240 2255 4.016105 AGAAGACAAGGATAAGGAGGAGGA 60.016 45.833 0.00 0.00 0.00 3.71
2241 2256 3.922375 AGACAAGGATAAGGAGGAGGAG 58.078 50.000 0.00 0.00 0.00 3.69
2242 2257 2.969262 GACAAGGATAAGGAGGAGGAGG 59.031 54.545 0.00 0.00 0.00 4.30
2243 2258 2.592512 ACAAGGATAAGGAGGAGGAGGA 59.407 50.000 0.00 0.00 0.00 3.71
2244 2259 3.238597 CAAGGATAAGGAGGAGGAGGAG 58.761 54.545 0.00 0.00 0.00 3.69
2245 2260 1.792651 AGGATAAGGAGGAGGAGGAGG 59.207 57.143 0.00 0.00 0.00 4.30
2246 2261 1.790157 GGATAAGGAGGAGGAGGAGGA 59.210 57.143 0.00 0.00 0.00 3.71
2247 2262 2.225267 GGATAAGGAGGAGGAGGAGGAG 60.225 59.091 0.00 0.00 0.00 3.69
2248 2263 1.236708 TAAGGAGGAGGAGGAGGAGG 58.763 60.000 0.00 0.00 0.00 4.30
2343 2358 2.109126 GCTGGAGGCGATCACCAAC 61.109 63.158 1.91 0.00 33.14 3.77
2358 2373 0.107703 CCAACCAGATCAAGGCGCTA 60.108 55.000 7.64 0.00 0.00 4.26
2487 2502 0.391395 CCAGAGAGTTCCTGCAGCTG 60.391 60.000 10.11 10.11 0.00 4.24
2682 2697 0.948678 CGTTTGACATCCCGGTTGTT 59.051 50.000 8.52 0.00 0.00 2.83
3390 3405 4.101790 GCCAACATGCACGTCGGG 62.102 66.667 0.00 0.00 0.00 5.14
3667 3688 3.544684 TCTGTTTCTCTGCAGCTGAAAA 58.455 40.909 25.35 17.84 32.50 2.29
3958 3983 7.116736 AGTATCCAAATTGTTACTTACCCCTG 58.883 38.462 0.00 0.00 0.00 4.45
3959 3984 5.586155 TCCAAATTGTTACTTACCCCTGA 57.414 39.130 0.00 0.00 0.00 3.86
4108 4136 1.580893 CGATCGTTTGCATGCACGG 60.581 57.895 22.58 12.63 37.02 4.94
4122 4150 2.402305 TGCACGGCAAAATGACATTTC 58.598 42.857 13.68 2.80 34.76 2.17
4142 4170 2.933906 TCCTCACACAACAAACTTCGAC 59.066 45.455 0.00 0.00 0.00 4.20
4147 4175 2.357637 ACACAACAAACTTCGACATGGG 59.642 45.455 0.00 0.00 0.00 4.00
4148 4176 2.616376 CACAACAAACTTCGACATGGGA 59.384 45.455 0.00 0.00 0.00 4.37
4239 4275 5.045942 TGGACTTATGGTTGTCTAAGATGCA 60.046 40.000 0.00 0.00 34.01 3.96
4306 4342 6.428083 TCCCTACAACTACAAATCACTCAA 57.572 37.500 0.00 0.00 0.00 3.02
4321 4357 5.077134 TCACTCAAACTCGTCATGATCAT 57.923 39.130 1.18 1.18 0.00 2.45
4353 4389 6.235664 TCAGAACTGTGGGTAAAATACTTCC 58.764 40.000 1.73 0.00 0.00 3.46
4408 4444 4.857509 AGACTTCTGTAGAACAGGTCAC 57.142 45.455 14.65 4.31 45.94 3.67
4413 4449 7.179338 AGACTTCTGTAGAACAGGTCACATTAT 59.821 37.037 14.65 0.00 45.94 1.28
4414 4450 7.324178 ACTTCTGTAGAACAGGTCACATTATC 58.676 38.462 7.18 0.00 45.94 1.75
4421 4457 5.934625 AGAACAGGTCACATTATCTGTCAAC 59.065 40.000 0.00 0.00 39.26 3.18
4522 4572 9.950680 CAAGAATGTACAACAGAAAATACAGTT 57.049 29.630 0.00 0.00 31.41 3.16
4544 4594 8.230486 CAGTTTGTAAATAAGAGCTACCAACAG 58.770 37.037 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.203224 TTCCGCGCCACCTTTCAA 60.203 55.556 0.00 0.00 0.00 2.69
3 4 2.975799 GTTCCGCGCCACCTTTCA 60.976 61.111 0.00 0.00 0.00 2.69
4 5 4.084888 CGTTCCGCGCCACCTTTC 62.085 66.667 0.00 0.00 0.00 2.62
14 15 3.508840 CAGATTGCCCCGTTCCGC 61.509 66.667 0.00 0.00 0.00 5.54
15 16 2.824041 CCAGATTGCCCCGTTCCG 60.824 66.667 0.00 0.00 0.00 4.30
16 17 1.749258 GACCAGATTGCCCCGTTCC 60.749 63.158 0.00 0.00 0.00 3.62
17 18 0.322546 AAGACCAGATTGCCCCGTTC 60.323 55.000 0.00 0.00 0.00 3.95
18 19 0.112412 AAAGACCAGATTGCCCCGTT 59.888 50.000 0.00 0.00 0.00 4.44
19 20 0.112412 AAAAGACCAGATTGCCCCGT 59.888 50.000 0.00 0.00 0.00 5.28
20 21 0.811281 GAAAAGACCAGATTGCCCCG 59.189 55.000 0.00 0.00 0.00 5.73
21 22 1.923356 TGAAAAGACCAGATTGCCCC 58.077 50.000 0.00 0.00 0.00 5.80
22 23 6.064717 AGTATATGAAAAGACCAGATTGCCC 58.935 40.000 0.00 0.00 0.00 5.36
23 24 7.934120 ACTAGTATATGAAAAGACCAGATTGCC 59.066 37.037 0.00 0.00 0.00 4.52
24 25 8.894768 ACTAGTATATGAAAAGACCAGATTGC 57.105 34.615 0.00 0.00 0.00 3.56
42 43 8.922676 GCATTGCACGTACATTATTACTAGTAT 58.077 33.333 2.79 0.00 0.00 2.12
43 44 7.921745 TGCATTGCACGTACATTATTACTAGTA 59.078 33.333 7.38 0.00 31.71 1.82
44 45 6.759356 TGCATTGCACGTACATTATTACTAGT 59.241 34.615 7.38 0.00 31.71 2.57
45 46 7.172654 TGCATTGCACGTACATTATTACTAG 57.827 36.000 7.38 0.00 31.71 2.57
61 62 7.496263 TCTTACCTAATATAAACGTGCATTGCA 59.504 33.333 7.38 7.38 35.60 4.08
62 63 7.857569 TCTTACCTAATATAAACGTGCATTGC 58.142 34.615 0.46 0.46 0.00 3.56
77 78 8.585881 ACGTGCAACAGATATATCTTACCTAAT 58.414 33.333 12.75 0.00 35.74 1.73
78 79 7.948357 ACGTGCAACAGATATATCTTACCTAA 58.052 34.615 12.75 0.00 35.74 2.69
79 80 7.520451 ACGTGCAACAGATATATCTTACCTA 57.480 36.000 12.75 0.00 35.74 3.08
80 81 6.406692 ACGTGCAACAGATATATCTTACCT 57.593 37.500 12.75 0.00 35.74 3.08
81 82 6.073765 CCAACGTGCAACAGATATATCTTACC 60.074 42.308 12.75 3.07 35.74 2.85
82 83 6.479001 ACCAACGTGCAACAGATATATCTTAC 59.521 38.462 12.75 6.63 35.74 2.34
83 84 6.578944 ACCAACGTGCAACAGATATATCTTA 58.421 36.000 12.75 0.00 35.74 2.10
84 85 5.428253 ACCAACGTGCAACAGATATATCTT 58.572 37.500 12.75 2.49 35.74 2.40
85 86 5.023533 ACCAACGTGCAACAGATATATCT 57.976 39.130 9.57 9.57 35.74 1.98
86 87 7.421530 AATACCAACGTGCAACAGATATATC 57.578 36.000 4.42 4.42 35.74 1.63
87 88 7.497579 TCAAATACCAACGTGCAACAGATATAT 59.502 33.333 0.00 0.00 35.74 0.86
88 89 6.819146 TCAAATACCAACGTGCAACAGATATA 59.181 34.615 0.00 0.00 35.74 0.86
89 90 5.645929 TCAAATACCAACGTGCAACAGATAT 59.354 36.000 0.00 0.00 35.74 1.63
90 91 4.998033 TCAAATACCAACGTGCAACAGATA 59.002 37.500 0.00 0.00 35.74 1.98
91 92 3.818210 TCAAATACCAACGTGCAACAGAT 59.182 39.130 0.00 0.00 35.74 2.90
92 93 3.206964 TCAAATACCAACGTGCAACAGA 58.793 40.909 0.00 0.00 35.74 3.41
93 94 3.617540 TCAAATACCAACGTGCAACAG 57.382 42.857 0.00 0.00 35.74 3.16
94 95 5.470437 TCTTATCAAATACCAACGTGCAACA 59.530 36.000 0.00 0.00 35.74 3.33
95 96 5.933790 TCTTATCAAATACCAACGTGCAAC 58.066 37.500 0.00 0.00 0.00 4.17
96 97 6.751514 ATCTTATCAAATACCAACGTGCAA 57.248 33.333 0.00 0.00 0.00 4.08
97 98 7.713073 TGATATCTTATCAAATACCAACGTGCA 59.287 33.333 3.98 0.00 0.00 4.57
98 99 8.083462 TGATATCTTATCAAATACCAACGTGC 57.917 34.615 3.98 0.00 0.00 5.34
130 131 1.003349 TCCTACCATTCCCGCGAAAAA 59.997 47.619 8.23 0.00 0.00 1.94
131 132 0.614294 TCCTACCATTCCCGCGAAAA 59.386 50.000 8.23 0.61 0.00 2.29
132 133 0.834612 ATCCTACCATTCCCGCGAAA 59.165 50.000 8.23 1.06 0.00 3.46
133 134 1.707106 TATCCTACCATTCCCGCGAA 58.293 50.000 8.23 0.00 0.00 4.70
134 135 1.933021 ATATCCTACCATTCCCGCGA 58.067 50.000 8.23 0.00 0.00 5.87
135 136 2.762535 AATATCCTACCATTCCCGCG 57.237 50.000 0.00 0.00 0.00 6.46
136 137 7.107542 TGTAATTAATATCCTACCATTCCCGC 58.892 38.462 0.00 0.00 0.00 6.13
137 138 9.109393 CATGTAATTAATATCCTACCATTCCCG 57.891 37.037 0.00 0.00 0.00 5.14
138 139 9.408648 CCATGTAATTAATATCCTACCATTCCC 57.591 37.037 0.00 0.00 0.00 3.97
139 140 8.903820 GCCATGTAATTAATATCCTACCATTCC 58.096 37.037 0.00 0.00 0.00 3.01
140 141 9.461312 TGCCATGTAATTAATATCCTACCATTC 57.539 33.333 0.00 0.00 0.00 2.67
141 142 9.466497 CTGCCATGTAATTAATATCCTACCATT 57.534 33.333 0.00 0.00 0.00 3.16
142 143 8.835734 TCTGCCATGTAATTAATATCCTACCAT 58.164 33.333 0.00 0.00 0.00 3.55
143 144 8.213489 TCTGCCATGTAATTAATATCCTACCA 57.787 34.615 0.00 0.00 0.00 3.25
144 145 9.686683 AATCTGCCATGTAATTAATATCCTACC 57.313 33.333 0.00 0.00 0.00 3.18
147 148 9.812347 TGAAATCTGCCATGTAATTAATATCCT 57.188 29.630 0.00 0.00 0.00 3.24
152 153 9.358406 TCTCATGAAATCTGCCATGTAATTAAT 57.642 29.630 0.00 0.00 40.59 1.40
153 154 8.750515 TCTCATGAAATCTGCCATGTAATTAA 57.249 30.769 0.00 0.00 40.59 1.40
154 155 8.929260 ATCTCATGAAATCTGCCATGTAATTA 57.071 30.769 0.00 0.00 40.59 1.40
155 156 7.834881 ATCTCATGAAATCTGCCATGTAATT 57.165 32.000 0.00 0.00 40.59 1.40
156 157 8.380867 TCTATCTCATGAAATCTGCCATGTAAT 58.619 33.333 0.00 0.00 40.59 1.89
157 158 7.738847 TCTATCTCATGAAATCTGCCATGTAA 58.261 34.615 0.00 0.00 40.59 2.41
158 159 7.015974 ACTCTATCTCATGAAATCTGCCATGTA 59.984 37.037 0.00 0.00 40.59 2.29
159 160 6.183361 ACTCTATCTCATGAAATCTGCCATGT 60.183 38.462 0.00 0.00 40.59 3.21
160 161 6.231951 ACTCTATCTCATGAAATCTGCCATG 58.768 40.000 0.00 0.00 40.97 3.66
161 162 6.436738 ACTCTATCTCATGAAATCTGCCAT 57.563 37.500 0.00 0.00 0.00 4.40
162 163 5.883685 ACTCTATCTCATGAAATCTGCCA 57.116 39.130 0.00 0.00 0.00 4.92
163 164 7.930865 ACTTAACTCTATCTCATGAAATCTGCC 59.069 37.037 0.00 0.00 0.00 4.85
164 165 8.885494 ACTTAACTCTATCTCATGAAATCTGC 57.115 34.615 0.00 0.00 0.00 4.26
186 187 9.483916 GCCTTGGTTATAAACATGTTTTAACTT 57.516 29.630 29.80 15.20 32.79 2.66
187 188 8.643324 TGCCTTGGTTATAAACATGTTTTAACT 58.357 29.630 29.80 18.86 32.79 2.24
188 189 8.819643 TGCCTTGGTTATAAACATGTTTTAAC 57.180 30.769 27.66 27.26 34.23 2.01
189 190 8.643324 ACTGCCTTGGTTATAAACATGTTTTAA 58.357 29.630 27.66 20.39 34.23 1.52
190 191 8.085296 CACTGCCTTGGTTATAAACATGTTTTA 58.915 33.333 27.66 16.44 34.23 1.52
191 192 6.928492 CACTGCCTTGGTTATAAACATGTTTT 59.072 34.615 27.66 17.34 34.23 2.43
192 193 6.454795 CACTGCCTTGGTTATAAACATGTTT 58.545 36.000 25.99 25.99 36.63 2.83
193 194 5.047377 CCACTGCCTTGGTTATAAACATGTT 60.047 40.000 4.92 4.92 0.00 2.71
194 195 4.462483 CCACTGCCTTGGTTATAAACATGT 59.538 41.667 3.54 0.00 0.00 3.21
195 196 4.997565 CCACTGCCTTGGTTATAAACATG 58.002 43.478 3.54 6.73 0.00 3.21
206 207 0.039618 ATTACCCACCACTGCCTTGG 59.960 55.000 0.00 0.00 43.04 3.61
207 208 1.923356 AATTACCCACCACTGCCTTG 58.077 50.000 0.00 0.00 0.00 3.61
208 209 3.818295 TTAATTACCCACCACTGCCTT 57.182 42.857 0.00 0.00 0.00 4.35
209 210 3.697166 CTTTAATTACCCACCACTGCCT 58.303 45.455 0.00 0.00 0.00 4.75
210 211 2.165641 GCTTTAATTACCCACCACTGCC 59.834 50.000 0.00 0.00 0.00 4.85
211 212 2.159435 CGCTTTAATTACCCACCACTGC 60.159 50.000 0.00 0.00 0.00 4.40
212 213 3.078837 ACGCTTTAATTACCCACCACTG 58.921 45.455 0.00 0.00 0.00 3.66
213 214 3.428413 ACGCTTTAATTACCCACCACT 57.572 42.857 0.00 0.00 0.00 4.00
214 215 5.625921 TTAACGCTTTAATTACCCACCAC 57.374 39.130 0.00 0.00 0.00 4.16
215 216 5.334724 CGTTTAACGCTTTAATTACCCACCA 60.335 40.000 4.11 0.00 33.65 4.17
216 217 5.088068 CGTTTAACGCTTTAATTACCCACC 58.912 41.667 4.11 0.00 33.65 4.61
233 234 7.478322 TGCTGTTATTGGTTAAACACGTTTAA 58.522 30.769 10.33 10.33 41.23 1.52
234 235 7.024340 TGCTGTTATTGGTTAAACACGTTTA 57.976 32.000 0.00 0.00 34.23 2.01
235 236 5.892568 TGCTGTTATTGGTTAAACACGTTT 58.107 33.333 0.00 0.22 36.63 3.60
236 237 5.502153 TGCTGTTATTGGTTAAACACGTT 57.498 34.783 0.00 0.00 32.43 3.99
237 238 5.699097 ATGCTGTTATTGGTTAAACACGT 57.301 34.783 0.00 0.00 32.43 4.49
238 239 5.918011 ACAATGCTGTTATTGGTTAAACACG 59.082 36.000 0.00 0.00 41.29 4.49
239 240 8.804688 TTACAATGCTGTTATTGGTTAAACAC 57.195 30.769 0.00 0.00 41.29 3.32
240 241 9.817809 TTTTACAATGCTGTTATTGGTTAAACA 57.182 25.926 0.00 0.00 41.29 2.83
243 244 9.906660 CTCTTTTACAATGCTGTTATTGGTTAA 57.093 29.630 0.00 0.00 41.29 2.01
244 245 9.290988 TCTCTTTTACAATGCTGTTATTGGTTA 57.709 29.630 0.00 0.00 41.29 2.85
245 246 8.177119 TCTCTTTTACAATGCTGTTATTGGTT 57.823 30.769 0.00 0.00 41.29 3.67
246 247 7.759489 TCTCTTTTACAATGCTGTTATTGGT 57.241 32.000 0.00 0.00 41.29 3.67
247 248 7.274250 GCTTCTCTTTTACAATGCTGTTATTGG 59.726 37.037 0.00 0.00 41.29 3.16
248 249 7.809331 TGCTTCTCTTTTACAATGCTGTTATTG 59.191 33.333 0.00 0.00 42.38 1.90
249 250 7.885297 TGCTTCTCTTTTACAATGCTGTTATT 58.115 30.769 0.00 0.00 36.96 1.40
250 251 7.452880 TGCTTCTCTTTTACAATGCTGTTAT 57.547 32.000 0.00 0.00 36.96 1.89
251 252 6.875948 TGCTTCTCTTTTACAATGCTGTTA 57.124 33.333 0.00 0.00 36.96 2.41
252 253 5.772825 TGCTTCTCTTTTACAATGCTGTT 57.227 34.783 0.00 0.00 36.96 3.16
253 254 5.772825 TTGCTTCTCTTTTACAATGCTGT 57.227 34.783 0.00 0.00 39.75 4.40
254 255 6.211515 AGTTTGCTTCTCTTTTACAATGCTG 58.788 36.000 0.00 0.00 0.00 4.41
255 256 6.264067 AGAGTTTGCTTCTCTTTTACAATGCT 59.736 34.615 0.00 0.00 38.91 3.79
256 257 6.361748 CAGAGTTTGCTTCTCTTTTACAATGC 59.638 38.462 3.82 0.00 39.84 3.56
257 258 7.420800 ACAGAGTTTGCTTCTCTTTTACAATG 58.579 34.615 3.82 0.00 39.84 2.82
258 259 7.573968 ACAGAGTTTGCTTCTCTTTTACAAT 57.426 32.000 3.82 0.00 39.84 2.71
259 260 7.254795 GCTACAGAGTTTGCTTCTCTTTTACAA 60.255 37.037 3.82 0.00 39.84 2.41
260 261 6.202954 GCTACAGAGTTTGCTTCTCTTTTACA 59.797 38.462 3.82 0.00 39.84 2.41
261 262 6.347806 GGCTACAGAGTTTGCTTCTCTTTTAC 60.348 42.308 3.82 0.00 39.84 2.01
262 263 5.701290 GGCTACAGAGTTTGCTTCTCTTTTA 59.299 40.000 3.82 0.13 39.84 1.52
263 264 4.517075 GGCTACAGAGTTTGCTTCTCTTTT 59.483 41.667 3.82 0.00 39.84 2.27
264 265 4.068599 GGCTACAGAGTTTGCTTCTCTTT 58.931 43.478 3.82 1.76 39.84 2.52
265 266 3.558109 GGGCTACAGAGTTTGCTTCTCTT 60.558 47.826 3.82 0.92 39.84 2.85
266 267 2.027653 GGGCTACAGAGTTTGCTTCTCT 60.028 50.000 0.00 0.00 42.16 3.10
267 268 2.289694 TGGGCTACAGAGTTTGCTTCTC 60.290 50.000 0.00 0.00 0.00 2.87
268 269 1.699634 TGGGCTACAGAGTTTGCTTCT 59.300 47.619 0.00 0.00 0.00 2.85
269 270 2.185004 TGGGCTACAGAGTTTGCTTC 57.815 50.000 0.00 0.00 0.00 3.86
270 271 2.040278 TCATGGGCTACAGAGTTTGCTT 59.960 45.455 0.00 0.00 0.00 3.91
271 272 1.630369 TCATGGGCTACAGAGTTTGCT 59.370 47.619 0.00 0.00 0.00 3.91
272 273 2.113860 TCATGGGCTACAGAGTTTGC 57.886 50.000 0.00 0.00 0.00 3.68
273 274 5.220931 GCTAATTCATGGGCTACAGAGTTTG 60.221 44.000 0.00 0.00 0.00 2.93
274 275 4.884164 GCTAATTCATGGGCTACAGAGTTT 59.116 41.667 0.00 0.00 0.00 2.66
275 276 4.080356 TGCTAATTCATGGGCTACAGAGTT 60.080 41.667 0.00 0.00 0.00 3.01
276 277 3.455910 TGCTAATTCATGGGCTACAGAGT 59.544 43.478 0.00 0.00 0.00 3.24
277 278 4.063689 CTGCTAATTCATGGGCTACAGAG 58.936 47.826 0.00 0.00 0.00 3.35
278 279 3.455910 ACTGCTAATTCATGGGCTACAGA 59.544 43.478 8.76 0.00 0.00 3.41
279 280 3.813443 ACTGCTAATTCATGGGCTACAG 58.187 45.455 0.00 0.00 0.00 2.74
280 281 3.931907 ACTGCTAATTCATGGGCTACA 57.068 42.857 0.00 0.00 0.00 2.74
281 282 6.595716 CCTATAACTGCTAATTCATGGGCTAC 59.404 42.308 0.00 0.00 0.00 3.58
282 283 6.711277 CCTATAACTGCTAATTCATGGGCTA 58.289 40.000 0.00 0.00 0.00 3.93
283 284 5.564550 CCTATAACTGCTAATTCATGGGCT 58.435 41.667 0.00 0.00 0.00 5.19
284 285 4.156739 GCCTATAACTGCTAATTCATGGGC 59.843 45.833 0.00 0.00 0.00 5.36
285 286 4.702131 GGCCTATAACTGCTAATTCATGGG 59.298 45.833 0.00 0.00 0.00 4.00
286 287 4.393062 CGGCCTATAACTGCTAATTCATGG 59.607 45.833 0.00 0.00 0.00 3.66
287 288 4.997395 ACGGCCTATAACTGCTAATTCATG 59.003 41.667 0.00 0.00 0.00 3.07
288 289 5.228945 ACGGCCTATAACTGCTAATTCAT 57.771 39.130 0.00 0.00 0.00 2.57
289 290 4.682778 ACGGCCTATAACTGCTAATTCA 57.317 40.909 0.00 0.00 0.00 2.57
290 291 5.296035 ACAAACGGCCTATAACTGCTAATTC 59.704 40.000 0.00 0.00 0.00 2.17
291 292 5.065988 CACAAACGGCCTATAACTGCTAATT 59.934 40.000 0.00 0.00 0.00 1.40
292 293 4.574828 CACAAACGGCCTATAACTGCTAAT 59.425 41.667 0.00 0.00 0.00 1.73
293 294 3.936453 CACAAACGGCCTATAACTGCTAA 59.064 43.478 0.00 0.00 0.00 3.09
294 295 3.055675 ACACAAACGGCCTATAACTGCTA 60.056 43.478 0.00 0.00 0.00 3.49
295 296 2.290071 ACACAAACGGCCTATAACTGCT 60.290 45.455 0.00 0.00 0.00 4.24
296 297 2.081462 ACACAAACGGCCTATAACTGC 58.919 47.619 0.00 0.00 0.00 4.40
297 298 4.759516 AAACACAAACGGCCTATAACTG 57.240 40.909 0.00 0.00 0.00 3.16
298 299 4.696877 GGTAAACACAAACGGCCTATAACT 59.303 41.667 0.00 0.00 0.00 2.24
299 300 4.142622 GGGTAAACACAAACGGCCTATAAC 60.143 45.833 0.00 0.00 0.00 1.89
300 301 4.009002 GGGTAAACACAAACGGCCTATAA 58.991 43.478 0.00 0.00 0.00 0.98
301 302 3.008813 TGGGTAAACACAAACGGCCTATA 59.991 43.478 0.00 0.00 0.00 1.31
302 303 2.224818 TGGGTAAACACAAACGGCCTAT 60.225 45.455 0.00 0.00 0.00 2.57
303 304 1.142465 TGGGTAAACACAAACGGCCTA 59.858 47.619 0.00 0.00 0.00 3.93
304 305 0.106619 TGGGTAAACACAAACGGCCT 60.107 50.000 0.00 0.00 0.00 5.19
305 306 0.745468 TTGGGTAAACACAAACGGCC 59.255 50.000 0.00 0.00 36.13 6.13
306 307 2.804697 ATTGGGTAAACACAAACGGC 57.195 45.000 1.25 0.00 43.23 5.68
307 308 5.184340 TGTTATTGGGTAAACACAAACGG 57.816 39.130 1.25 0.00 43.23 4.44
308 309 4.677832 GCTGTTATTGGGTAAACACAAACG 59.322 41.667 1.25 0.00 43.23 3.60
309 310 5.593010 TGCTGTTATTGGGTAAACACAAAC 58.407 37.500 1.25 0.00 43.23 2.93
310 311 5.854010 TGCTGTTATTGGGTAAACACAAA 57.146 34.783 1.25 0.00 43.23 2.83
311 312 6.412362 AATGCTGTTATTGGGTAAACACAA 57.588 33.333 0.00 0.00 44.24 3.33
312 313 6.349777 GCTAATGCTGTTATTGGGTAAACACA 60.350 38.462 0.00 0.00 36.03 3.72
313 314 6.033966 GCTAATGCTGTTATTGGGTAAACAC 58.966 40.000 0.00 0.00 36.03 3.32
314 315 6.202516 GCTAATGCTGTTATTGGGTAAACA 57.797 37.500 0.00 0.00 36.03 2.83
330 331 3.539604 ACATCAGAGTTCCAGCTAATGC 58.460 45.455 0.00 0.00 40.05 3.56
331 332 5.053145 GGTACATCAGAGTTCCAGCTAATG 58.947 45.833 0.00 0.00 0.00 1.90
332 333 4.202161 CGGTACATCAGAGTTCCAGCTAAT 60.202 45.833 0.00 0.00 0.00 1.73
333 334 3.130516 CGGTACATCAGAGTTCCAGCTAA 59.869 47.826 0.00 0.00 0.00 3.09
334 335 2.688446 CGGTACATCAGAGTTCCAGCTA 59.312 50.000 0.00 0.00 0.00 3.32
335 336 1.478510 CGGTACATCAGAGTTCCAGCT 59.521 52.381 0.00 0.00 0.00 4.24
336 337 1.927895 CGGTACATCAGAGTTCCAGC 58.072 55.000 0.00 0.00 0.00 4.85
337 338 1.471676 GGCGGTACATCAGAGTTCCAG 60.472 57.143 0.00 0.00 0.00 3.86
338 339 0.535335 GGCGGTACATCAGAGTTCCA 59.465 55.000 0.00 0.00 0.00 3.53
339 340 0.179081 GGGCGGTACATCAGAGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
340 341 0.179081 GGGGCGGTACATCAGAGTTC 60.179 60.000 0.00 0.00 0.00 3.01
341 342 0.907704 TGGGGCGGTACATCAGAGTT 60.908 55.000 0.00 0.00 0.00 3.01
342 343 0.907704 TTGGGGCGGTACATCAGAGT 60.908 55.000 0.00 0.00 0.00 3.24
343 344 0.179073 CTTGGGGCGGTACATCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
344 345 0.907704 ACTTGGGGCGGTACATCAGA 60.908 55.000 0.00 0.00 0.00 3.27
345 346 0.744414 CACTTGGGGCGGTACATCAG 60.744 60.000 0.00 0.00 0.00 2.90
346 347 1.298340 CACTTGGGGCGGTACATCA 59.702 57.895 0.00 0.00 0.00 3.07
347 348 1.451387 CCACTTGGGGCGGTACATC 60.451 63.158 0.00 0.00 0.00 3.06
348 349 2.674754 CCACTTGGGGCGGTACAT 59.325 61.111 0.00 0.00 0.00 2.29
349 350 4.338710 GCCACTTGGGGCGGTACA 62.339 66.667 0.00 0.00 45.40 2.90
356 357 1.042559 ACACAAACTGCCACTTGGGG 61.043 55.000 0.00 0.00 37.04 4.96
357 358 0.385390 GACACAAACTGCCACTTGGG 59.615 55.000 0.00 0.00 40.85 4.12
358 359 1.334869 GAGACACAAACTGCCACTTGG 59.665 52.381 0.00 0.00 38.53 3.61
359 360 2.016318 TGAGACACAAACTGCCACTTG 58.984 47.619 0.00 0.00 0.00 3.16
360 361 2.292267 CTGAGACACAAACTGCCACTT 58.708 47.619 0.00 0.00 0.00 3.16
361 362 1.475751 CCTGAGACACAAACTGCCACT 60.476 52.381 0.00 0.00 0.00 4.00
362 363 0.947244 CCTGAGACACAAACTGCCAC 59.053 55.000 0.00 0.00 0.00 5.01
363 364 0.819259 GCCTGAGACACAAACTGCCA 60.819 55.000 0.00 0.00 0.00 4.92
364 365 1.845809 CGCCTGAGACACAAACTGCC 61.846 60.000 0.00 0.00 0.00 4.85
365 366 0.880278 TCGCCTGAGACACAAACTGC 60.880 55.000 0.00 0.00 0.00 4.40
366 367 1.800805 ATCGCCTGAGACACAAACTG 58.199 50.000 0.00 0.00 0.00 3.16
367 368 3.525537 CATATCGCCTGAGACACAAACT 58.474 45.455 0.00 0.00 0.00 2.66
368 369 2.030946 GCATATCGCCTGAGACACAAAC 59.969 50.000 0.00 0.00 32.94 2.93
369 370 2.279741 GCATATCGCCTGAGACACAAA 58.720 47.619 0.00 0.00 32.94 2.83
370 371 1.939974 GCATATCGCCTGAGACACAA 58.060 50.000 0.00 0.00 32.94 3.33
371 372 3.667448 GCATATCGCCTGAGACACA 57.333 52.632 0.00 0.00 32.94 3.72
388 389 1.371595 TAAATTAACGGTGCTCGGGC 58.628 50.000 0.00 0.00 44.45 6.13
389 390 5.738118 TTTATAAATTAACGGTGCTCGGG 57.262 39.130 0.00 0.00 44.45 5.14
390 391 5.007332 AGCTTTATAAATTAACGGTGCTCGG 59.993 40.000 0.00 0.00 44.45 4.63
391 392 6.018994 AGAGCTTTATAAATTAACGGTGCTCG 60.019 38.462 18.42 0.00 45.13 5.03
392 393 7.126398 CAGAGCTTTATAAATTAACGGTGCTC 58.874 38.462 17.51 17.51 42.14 4.26
393 394 6.458342 GCAGAGCTTTATAAATTAACGGTGCT 60.458 38.462 0.00 1.40 0.00 4.40
394 395 5.681543 GCAGAGCTTTATAAATTAACGGTGC 59.318 40.000 0.00 0.00 0.00 5.01
395 396 7.016361 AGCAGAGCTTTATAAATTAACGGTG 57.984 36.000 0.00 0.00 33.89 4.94
411 412 2.664402 TTTTGAGGGAAAGCAGAGCT 57.336 45.000 0.00 0.00 42.56 4.09
444 445 5.561993 TGTTGAGCACTAAACACGTTTAAC 58.438 37.500 4.10 0.88 34.95 2.01
445 446 5.798015 TGTTGAGCACTAAACACGTTTAA 57.202 34.783 4.10 0.00 34.95 1.52
446 447 5.994887 ATGTTGAGCACTAAACACGTTTA 57.005 34.783 2.61 2.60 39.00 2.01
447 448 4.893424 ATGTTGAGCACTAAACACGTTT 57.107 36.364 2.61 0.22 39.00 3.60
448 449 4.497340 CCAATGTTGAGCACTAAACACGTT 60.497 41.667 2.61 0.00 39.00 3.99
449 450 3.003275 CCAATGTTGAGCACTAAACACGT 59.997 43.478 2.61 0.00 39.00 4.49
450 451 3.249799 TCCAATGTTGAGCACTAAACACG 59.750 43.478 2.61 0.00 39.00 4.49
451 452 4.787598 CTCCAATGTTGAGCACTAAACAC 58.212 43.478 2.61 0.00 39.00 3.32
452 453 3.253188 GCTCCAATGTTGAGCACTAAACA 59.747 43.478 3.05 3.05 41.24 2.83
453 454 3.667960 CGCTCCAATGTTGAGCACTAAAC 60.668 47.826 12.22 0.00 41.64 2.01
454 455 2.483877 CGCTCCAATGTTGAGCACTAAA 59.516 45.455 12.22 0.00 41.64 1.85
455 456 2.076100 CGCTCCAATGTTGAGCACTAA 58.924 47.619 12.22 0.00 41.64 2.24
456 457 1.275010 TCGCTCCAATGTTGAGCACTA 59.725 47.619 12.22 0.00 41.64 2.74
457 458 0.035317 TCGCTCCAATGTTGAGCACT 59.965 50.000 12.22 0.00 41.64 4.40
458 459 1.089920 ATCGCTCCAATGTTGAGCAC 58.910 50.000 12.22 0.00 41.64 4.40
459 460 1.825090 AATCGCTCCAATGTTGAGCA 58.175 45.000 12.22 1.02 41.64 4.26
460 461 2.162208 TCAAATCGCTCCAATGTTGAGC 59.838 45.455 2.24 2.24 38.48 4.26
461 462 4.161333 GTTCAAATCGCTCCAATGTTGAG 58.839 43.478 0.00 0.00 0.00 3.02
462 463 3.567585 TGTTCAAATCGCTCCAATGTTGA 59.432 39.130 0.00 0.00 0.00 3.18
463 464 3.899734 TGTTCAAATCGCTCCAATGTTG 58.100 40.909 0.00 0.00 0.00 3.33
464 465 3.612479 GCTGTTCAAATCGCTCCAATGTT 60.612 43.478 0.00 0.00 0.00 2.71
465 466 2.095059 GCTGTTCAAATCGCTCCAATGT 60.095 45.455 0.00 0.00 0.00 2.71
466 467 2.163010 AGCTGTTCAAATCGCTCCAATG 59.837 45.455 0.00 0.00 0.00 2.82
467 468 2.421424 GAGCTGTTCAAATCGCTCCAAT 59.579 45.455 0.00 0.00 42.20 3.16
468 469 1.806542 GAGCTGTTCAAATCGCTCCAA 59.193 47.619 0.00 0.00 42.20 3.53
469 470 1.442769 GAGCTGTTCAAATCGCTCCA 58.557 50.000 0.00 0.00 42.20 3.86
470 471 0.371645 CGAGCTGTTCAAATCGCTCC 59.628 55.000 0.00 0.00 44.45 4.70
471 472 1.350193 TCGAGCTGTTCAAATCGCTC 58.650 50.000 0.00 0.00 43.99 5.03
472 473 2.015736 ATCGAGCTGTTCAAATCGCT 57.984 45.000 0.00 0.00 35.23 4.93
473 474 3.062099 TGTTATCGAGCTGTTCAAATCGC 59.938 43.478 0.00 0.00 35.23 4.58
474 475 4.840401 TGTTATCGAGCTGTTCAAATCG 57.160 40.909 0.00 0.00 36.54 3.34
475 476 6.349973 TCATGTTATCGAGCTGTTCAAATC 57.650 37.500 0.00 0.00 0.00 2.17
476 477 6.932356 ATCATGTTATCGAGCTGTTCAAAT 57.068 33.333 0.00 0.00 0.00 2.32
477 478 6.741992 AATCATGTTATCGAGCTGTTCAAA 57.258 33.333 0.00 0.00 0.00 2.69
478 479 6.371271 TCAAATCATGTTATCGAGCTGTTCAA 59.629 34.615 0.00 0.00 0.00 2.69
479 480 5.874261 TCAAATCATGTTATCGAGCTGTTCA 59.126 36.000 0.00 0.00 0.00 3.18
480 481 6.188175 GTCAAATCATGTTATCGAGCTGTTC 58.812 40.000 0.00 0.00 0.00 3.18
481 482 5.220472 CGTCAAATCATGTTATCGAGCTGTT 60.220 40.000 0.00 0.00 0.00 3.16
482 483 4.268644 CGTCAAATCATGTTATCGAGCTGT 59.731 41.667 0.00 0.00 0.00 4.40
483 484 4.318333 CCGTCAAATCATGTTATCGAGCTG 60.318 45.833 0.00 0.00 0.00 4.24
484 485 3.804325 CCGTCAAATCATGTTATCGAGCT 59.196 43.478 0.00 0.00 0.00 4.09
485 486 3.555956 ACCGTCAAATCATGTTATCGAGC 59.444 43.478 0.00 0.00 0.00 5.03
486 487 4.085568 CGACCGTCAAATCATGTTATCGAG 60.086 45.833 0.00 0.00 0.00 4.04
487 488 3.794564 CGACCGTCAAATCATGTTATCGA 59.205 43.478 0.00 0.00 0.00 3.59
488 489 3.794564 TCGACCGTCAAATCATGTTATCG 59.205 43.478 0.00 0.00 0.00 2.92
489 490 5.041287 TCTCGACCGTCAAATCATGTTATC 58.959 41.667 0.00 0.00 0.00 1.75
490 491 5.006153 TCTCGACCGTCAAATCATGTTAT 57.994 39.130 0.00 0.00 0.00 1.89
491 492 4.443913 TCTCGACCGTCAAATCATGTTA 57.556 40.909 0.00 0.00 0.00 2.41
492 493 3.313012 TCTCGACCGTCAAATCATGTT 57.687 42.857 0.00 0.00 0.00 2.71
493 494 3.190079 CATCTCGACCGTCAAATCATGT 58.810 45.455 0.00 0.00 0.00 3.21
494 495 2.541346 CCATCTCGACCGTCAAATCATG 59.459 50.000 0.00 0.00 0.00 3.07
495 496 2.168521 ACCATCTCGACCGTCAAATCAT 59.831 45.455 0.00 0.00 0.00 2.45
496 497 1.548719 ACCATCTCGACCGTCAAATCA 59.451 47.619 0.00 0.00 0.00 2.57
497 498 2.295253 ACCATCTCGACCGTCAAATC 57.705 50.000 0.00 0.00 0.00 2.17
498 499 2.742053 CAAACCATCTCGACCGTCAAAT 59.258 45.455 0.00 0.00 0.00 2.32
499 500 2.139917 CAAACCATCTCGACCGTCAAA 58.860 47.619 0.00 0.00 0.00 2.69
500 501 1.606994 CCAAACCATCTCGACCGTCAA 60.607 52.381 0.00 0.00 0.00 3.18
501 502 0.037697 CCAAACCATCTCGACCGTCA 60.038 55.000 0.00 0.00 0.00 4.35
502 503 0.245539 TCCAAACCATCTCGACCGTC 59.754 55.000 0.00 0.00 0.00 4.79
503 504 0.902531 ATCCAAACCATCTCGACCGT 59.097 50.000 0.00 0.00 0.00 4.83
504 505 1.137086 AGATCCAAACCATCTCGACCG 59.863 52.381 0.00 0.00 0.00 4.79
505 506 2.555199 CAGATCCAAACCATCTCGACC 58.445 52.381 0.00 0.00 0.00 4.79
506 507 1.936547 GCAGATCCAAACCATCTCGAC 59.063 52.381 0.00 0.00 0.00 4.20
507 508 1.134401 GGCAGATCCAAACCATCTCGA 60.134 52.381 0.00 0.00 34.01 4.04
508 509 1.303309 GGCAGATCCAAACCATCTCG 58.697 55.000 0.00 0.00 34.01 4.04
509 510 1.213926 AGGGCAGATCCAAACCATCTC 59.786 52.381 0.00 0.00 36.21 2.75
510 511 1.302907 AGGGCAGATCCAAACCATCT 58.697 50.000 0.00 0.00 36.21 2.90
511 512 2.149973 AAGGGCAGATCCAAACCATC 57.850 50.000 0.00 0.00 36.21 3.51
512 513 2.181975 CAAAGGGCAGATCCAAACCAT 58.818 47.619 0.00 0.00 36.21 3.55
513 514 1.631405 CAAAGGGCAGATCCAAACCA 58.369 50.000 0.00 0.00 36.21 3.67
514 515 0.897621 CCAAAGGGCAGATCCAAACC 59.102 55.000 0.00 0.00 36.21 3.27
515 516 0.897621 CCCAAAGGGCAGATCCAAAC 59.102 55.000 0.00 0.00 35.35 2.93
516 517 3.379617 CCCAAAGGGCAGATCCAAA 57.620 52.632 0.00 0.00 35.35 3.28
562 563 8.726068 GCTCTAAGCTTGTCTTCTTTTTAATCT 58.274 33.333 9.86 0.00 38.45 2.40
563 564 8.507249 TGCTCTAAGCTTGTCTTCTTTTTAATC 58.493 33.333 9.86 0.00 42.97 1.75
564 565 8.396272 TGCTCTAAGCTTGTCTTCTTTTTAAT 57.604 30.769 9.86 0.00 42.97 1.40
565 566 7.801716 TGCTCTAAGCTTGTCTTCTTTTTAA 57.198 32.000 9.86 0.00 42.97 1.52
566 567 7.986085 ATGCTCTAAGCTTGTCTTCTTTTTA 57.014 32.000 9.86 0.00 42.97 1.52
567 568 6.890979 ATGCTCTAAGCTTGTCTTCTTTTT 57.109 33.333 9.86 0.00 42.97 1.94
568 569 6.890979 AATGCTCTAAGCTTGTCTTCTTTT 57.109 33.333 9.86 0.00 42.97 2.27
569 570 7.281999 GGATAATGCTCTAAGCTTGTCTTCTTT 59.718 37.037 9.86 2.32 42.97 2.52
570 571 6.765512 GGATAATGCTCTAAGCTTGTCTTCTT 59.234 38.462 9.86 0.00 42.97 2.52
571 572 6.099557 AGGATAATGCTCTAAGCTTGTCTTCT 59.900 38.462 9.86 0.00 42.97 2.85
572 573 6.287525 AGGATAATGCTCTAAGCTTGTCTTC 58.712 40.000 9.86 0.00 42.97 2.87
573 574 6.099557 AGAGGATAATGCTCTAAGCTTGTCTT 59.900 38.462 9.86 0.00 43.62 3.01
606 608 6.882610 TCATGTGATTGGATAAATAGCACC 57.117 37.500 0.00 0.00 0.00 5.01
823 829 4.579384 AAGTGTGTGGCGGTGGGG 62.579 66.667 0.00 0.00 0.00 4.96
962 968 2.404186 CGTCGACCCGATCACCTCA 61.404 63.158 10.58 0.00 38.42 3.86
1116 1122 3.047718 GACATCCTCGCCGACGACA 62.048 63.158 0.00 0.00 45.12 4.35
1176 1182 3.475494 ATGGACATGCGGCGGGTA 61.475 61.111 9.78 0.00 0.00 3.69
1186 1192 1.899437 AACGGCGAGGTCATGGACAT 61.899 55.000 16.62 0.00 33.68 3.06
1218 1224 1.685820 CTCCTTCTTCCCCGCCTTT 59.314 57.895 0.00 0.00 0.00 3.11
1410 1416 0.677098 CCACCTCGACGGAGAAGAGA 60.677 60.000 7.76 0.00 43.27 3.10
1485 1491 2.430921 CGCGACTCCTTCTTGCGT 60.431 61.111 0.00 0.00 43.50 5.24
1617 1623 2.048877 GGTTCGAACTTCGCCGGA 60.049 61.111 26.32 0.00 40.21 5.14
1632 1638 4.312152 AGGAGGAACGGACGGGGT 62.312 66.667 0.00 0.00 0.00 4.95
1638 1644 2.116772 ACGGACAGGAGGAACGGA 59.883 61.111 0.00 0.00 0.00 4.69
1719 1725 1.203523 CTCTTCTCCGTGGACTCCTTG 59.796 57.143 0.00 0.00 0.00 3.61
1901 1910 3.467119 CGAACAACGCCGACGAGG 61.467 66.667 0.00 0.00 43.93 4.63
1921 1930 1.347817 GACGTCTTGCTCTGCTTCCG 61.348 60.000 8.70 0.00 0.00 4.30
2007 2016 2.031012 CCACTCAAGTCCTGCGCA 59.969 61.111 10.98 10.98 0.00 6.09
2082 2091 1.034838 GCTCCGGCTCTCTCTTCTGA 61.035 60.000 0.00 0.00 35.22 3.27
2120 2129 2.591915 GGGAACTCCGAGTCATCCA 58.408 57.895 17.46 0.00 36.71 3.41
2154 2163 1.947146 CACGCCTTTGTCGACGACA 60.947 57.895 26.04 26.04 41.09 4.35
2240 2255 4.021925 GCGTTGTGCCCTCCTCCT 62.022 66.667 0.00 0.00 37.76 3.69
2343 2358 0.749649 ACTCTAGCGCCTTGATCTGG 59.250 55.000 2.29 0.00 0.00 3.86
2358 2373 1.515020 GCCGAGCATCAGTGACTCT 59.485 57.895 0.00 0.00 33.17 3.24
2487 2502 2.364842 TCCTCTCCCTGCTCCAGC 60.365 66.667 0.00 0.00 42.50 4.85
2613 2628 4.408821 GTCTGCACGATGGGGCCA 62.409 66.667 4.39 0.00 0.00 5.36
2810 2825 2.031012 TGAGTGCACCCAGCTTCG 59.969 61.111 14.63 0.00 45.94 3.79
2844 2859 3.288308 CTCTGCCGTCTTGCCGACT 62.288 63.158 2.36 0.00 40.59 4.18
3390 3405 3.512516 GTCTTCAGCCGCATGCCC 61.513 66.667 13.15 3.23 42.71 5.36
3435 3450 2.493973 GTCAGCCTCTGCCTCTCG 59.506 66.667 0.00 0.00 38.69 4.04
3667 3688 2.421529 GGTGTGGAACCTGAAGAAGTGT 60.422 50.000 0.00 0.00 46.55 3.55
3746 3767 9.566432 CACTATTTTAGGGATCTAAATGCTCTT 57.434 33.333 0.00 0.00 42.84 2.85
3781 3802 8.074991 ACTCCCTCCCTAAAGAAATATAAGAGT 58.925 37.037 0.00 0.00 0.00 3.24
3798 3819 0.325765 ACTTCCTGCTACTCCCTCCC 60.326 60.000 0.00 0.00 0.00 4.30
3836 3857 6.376864 TCAACACAGGAACAAAATGAGAAGAA 59.623 34.615 0.00 0.00 0.00 2.52
3838 3859 6.135290 TCAACACAGGAACAAAATGAGAAG 57.865 37.500 0.00 0.00 0.00 2.85
3839 3860 6.320926 TCATCAACACAGGAACAAAATGAGAA 59.679 34.615 0.00 0.00 0.00 2.87
3841 3862 6.016860 TCTCATCAACACAGGAACAAAATGAG 60.017 38.462 0.00 0.00 39.13 2.90
3943 3968 8.701895 CACTATATTCTCAGGGGTAAGTAACAA 58.298 37.037 0.00 0.00 0.00 2.83
3958 3983 9.922305 GCAAGTTGTCATTTACACTATATTCTC 57.078 33.333 4.48 0.00 38.00 2.87
3959 3984 9.448438 TGCAAGTTGTCATTTACACTATATTCT 57.552 29.630 4.48 0.00 38.00 2.40
4108 4136 4.619973 TGTGTGAGGAAATGTCATTTTGC 58.380 39.130 12.04 5.83 31.47 3.68
4122 4150 2.675844 TGTCGAAGTTTGTTGTGTGAGG 59.324 45.455 0.00 0.00 0.00 3.86
4142 4170 5.240183 CAGGATGCTTTGTAGTATTCCCATG 59.760 44.000 0.00 0.00 0.00 3.66
4147 4175 7.750903 GTGTTTTCAGGATGCTTTGTAGTATTC 59.249 37.037 0.00 0.00 34.76 1.75
4148 4176 7.230510 TGTGTTTTCAGGATGCTTTGTAGTATT 59.769 33.333 0.00 0.00 34.76 1.89
4306 4342 5.728471 AGTTCTTGATGATCATGACGAGTT 58.272 37.500 14.30 0.00 31.43 3.01
4321 4357 2.771943 ACCCACAGTTCTGAGTTCTTGA 59.228 45.455 6.83 0.00 0.00 3.02
4393 4429 6.634805 ACAGATAATGTGACCTGTTCTACAG 58.365 40.000 0.00 0.00 42.57 2.74
4408 4444 8.733458 TGATCTGGAAAAAGTTGACAGATAATG 58.267 33.333 5.56 0.00 45.83 1.90
4413 4449 4.511454 CGTGATCTGGAAAAAGTTGACAGA 59.489 41.667 0.00 0.00 41.79 3.41
4414 4450 4.511454 TCGTGATCTGGAAAAAGTTGACAG 59.489 41.667 0.00 0.00 0.00 3.51
4421 4457 3.126000 GCTTCCTCGTGATCTGGAAAAAG 59.874 47.826 0.00 0.01 39.10 2.27
4455 4491 5.076182 TGTTGATCTGTTTATTTCAGGCCA 58.924 37.500 5.01 0.00 34.15 5.36
4522 4572 6.234920 TGCTGTTGGTAGCTCTTATTTACAA 58.765 36.000 0.00 0.00 44.01 2.41
4527 4577 4.826274 TCTGCTGTTGGTAGCTCTTATT 57.174 40.909 0.00 0.00 44.01 1.40
4544 4594 9.757227 ATCTTATCTACAGACTGTATTTTCTGC 57.243 33.333 15.58 0.00 42.67 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.