Multiple sequence alignment - TraesCS5B01G357100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G357100 chr5B 100.000 4525 0 0 1 4525 536582821 536587345 0.000000e+00 8357
1 TraesCS5B01G357100 chr5D 93.950 3587 143 30 981 4525 441017142 441020696 0.000000e+00 5354
2 TraesCS5B01G357100 chr5D 92.657 286 21 0 1 286 441013186 441013471 3.260000e-111 412
3 TraesCS5B01G357100 chr5D 93.725 255 11 2 697 947 441016486 441016739 1.190000e-100 377
4 TraesCS5B01G357100 chr5A 92.865 3420 153 40 764 4129 557123596 557126978 0.000000e+00 4879
5 TraesCS5B01G357100 chr5A 94.410 322 11 2 4210 4525 557126976 557127296 5.260000e-134 488
6 TraesCS5B01G357100 chr7D 95.455 88 4 0 4126 4213 470204790 470204877 1.700000e-29 141
7 TraesCS5B01G357100 chr7D 92.553 94 7 0 4127 4220 1260950 1261043 7.900000e-28 135
8 TraesCS5B01G357100 chr3D 95.455 88 4 0 4127 4214 610206581 610206668 1.700000e-29 141
9 TraesCS5B01G357100 chr3D 92.000 100 5 3 4114 4212 22679048 22679145 2.200000e-28 137
10 TraesCS5B01G357100 chr3D 92.000 100 5 3 4114 4212 22767910 22767813 2.200000e-28 137
11 TraesCS5B01G357100 chr7A 91.837 98 7 1 4127 4224 285604 285700 7.900000e-28 135
12 TraesCS5B01G357100 chr4A 92.473 93 7 0 4124 4216 9380672 9380764 2.840000e-27 134
13 TraesCS5B01G357100 chr2B 90.196 102 7 3 4113 4213 197957454 197957553 3.670000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G357100 chr5B 536582821 536587345 4524 False 8357.000000 8357 100.0000 1 4525 1 chr5B.!!$F1 4524
1 TraesCS5B01G357100 chr5D 441013186 441020696 7510 False 2047.666667 5354 93.4440 1 4525 3 chr5D.!!$F1 4524
2 TraesCS5B01G357100 chr5A 557123596 557127296 3700 False 2683.500000 4879 93.6375 764 4525 2 chr5A.!!$F1 3761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 3516 0.319641 GTCCAGTCTCCACGAACACC 60.320 60.0 0.0 0.0 0.0 4.16 F
1511 4500 0.036164 ACCATGTTTGCCTGCTCGTA 59.964 50.0 0.0 0.0 0.0 3.43 F
1725 4723 0.169009 GCGGTTTTCTGATGCCTCAC 59.831 55.0 0.0 0.0 0.0 3.51 F
3137 6153 1.668101 CGACTCTACCTGTCCAGCCC 61.668 65.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 4847 0.667487 CTCTCCAAAGCGACGAAGCA 60.667 55.000 0.00 0.00 40.15 3.91 R
3123 6139 0.400213 TTTGTGGGCTGGACAGGTAG 59.600 55.000 1.01 0.00 0.00 3.18 R
3221 6237 2.121564 CTTGTGAACAGCCCACGCAG 62.122 60.000 0.00 0.00 37.34 5.18 R
4267 7315 3.544684 TCTGTTTCTCTGCAGCTGAAAA 58.455 40.909 25.35 17.84 32.50 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 6.747280 CCAATTTAAACTCAAATGCCTCTACG 59.253 38.462 0.00 0.00 0.00 3.51
111 112 5.654603 TGCCTCTACGAACTCAGAATTAA 57.345 39.130 0.00 0.00 0.00 1.40
134 135 6.787085 AAATCGACTACTTTCTGTTTCCTG 57.213 37.500 0.00 0.00 0.00 3.86
158 159 3.831715 GCAGTCGGCATCTTTAGTTTT 57.168 42.857 0.00 0.00 43.97 2.43
170 171 6.917477 GCATCTTTAGTTTTGTCACATGTGAA 59.083 34.615 29.42 16.72 41.85 3.18
174 175 7.967854 TCTTTAGTTTTGTCACATGTGAAACTG 59.032 33.333 34.24 24.76 41.85 3.16
193 194 9.914131 TGAAACTGATAGATCGGATTTAGTATG 57.086 33.333 5.34 0.00 36.97 2.39
205 206 4.024048 GGATTTAGTATGACCCAATGTGCG 60.024 45.833 0.00 0.00 0.00 5.34
306 307 7.832187 TCTGGGTTTAAATATTACTGACTTGGG 59.168 37.037 0.00 0.00 0.00 4.12
307 308 6.893005 TGGGTTTAAATATTACTGACTTGGGG 59.107 38.462 0.00 0.00 0.00 4.96
308 309 7.120716 GGGTTTAAATATTACTGACTTGGGGA 58.879 38.462 0.00 0.00 0.00 4.81
309 310 7.067859 GGGTTTAAATATTACTGACTTGGGGAC 59.932 40.741 0.00 0.00 0.00 4.46
310 311 7.832685 GGTTTAAATATTACTGACTTGGGGACT 59.167 37.037 0.00 0.00 0.00 3.85
312 313 9.895138 TTTAAATATTACTGACTTGGGGACTAC 57.105 33.333 0.00 0.00 0.00 2.73
313 314 5.786264 ATATTACTGACTTGGGGACTACG 57.214 43.478 0.00 0.00 0.00 3.51
315 316 0.966920 ACTGACTTGGGGACTACGTG 59.033 55.000 0.00 0.00 0.00 4.49
316 317 0.966920 CTGACTTGGGGACTACGTGT 59.033 55.000 0.00 0.00 0.00 4.49
317 318 1.343465 CTGACTTGGGGACTACGTGTT 59.657 52.381 0.00 0.00 0.00 3.32
319 320 2.297033 TGACTTGGGGACTACGTGTTAC 59.703 50.000 0.00 0.00 0.00 2.50
333 334 4.525411 CGTGTTACGGAAGACTTTGTTT 57.475 40.909 6.06 0.00 38.08 2.83
334 335 4.900664 CGTGTTACGGAAGACTTTGTTTT 58.099 39.130 6.06 0.00 38.08 2.43
335 336 6.035070 CGTGTTACGGAAGACTTTGTTTTA 57.965 37.500 6.06 0.00 38.08 1.52
336 337 6.476896 CGTGTTACGGAAGACTTTGTTTTAA 58.523 36.000 6.06 0.00 38.08 1.52
337 338 6.626095 CGTGTTACGGAAGACTTTGTTTTAAG 59.374 38.462 6.06 0.00 38.08 1.85
338 339 7.464444 CGTGTTACGGAAGACTTTGTTTTAAGA 60.464 37.037 6.06 0.00 38.08 2.10
343 1269 6.136743 CGGAAGACTTTGTTTTAAGAGAAGC 58.863 40.000 0.00 0.00 0.00 3.86
344 1270 6.238374 CGGAAGACTTTGTTTTAAGAGAAGCA 60.238 38.462 0.00 0.00 0.00 3.91
350 1276 9.709600 GACTTTGTTTTAAGAGAAGCATATAGC 57.290 33.333 0.00 0.00 46.19 2.97
362 1288 2.128035 GCATATAGCTGACGGTGTCAC 58.872 52.381 0.00 0.00 37.67 3.67
364 1290 3.780902 CATATAGCTGACGGTGTCACAA 58.219 45.455 5.12 0.00 37.67 3.33
370 1296 4.072131 AGCTGACGGTGTCACAAATAATT 58.928 39.130 5.12 0.00 37.67 1.40
372 1298 5.351465 AGCTGACGGTGTCACAAATAATTAG 59.649 40.000 5.12 0.00 37.67 1.73
373 1299 5.121768 GCTGACGGTGTCACAAATAATTAGT 59.878 40.000 5.12 0.00 37.67 2.24
378 1304 8.106247 ACGGTGTCACAAATAATTAGTTTCAT 57.894 30.769 5.12 0.00 0.00 2.57
379 1305 8.573035 ACGGTGTCACAAATAATTAGTTTCATT 58.427 29.630 5.12 0.00 0.00 2.57
380 1306 9.061610 CGGTGTCACAAATAATTAGTTTCATTC 57.938 33.333 5.12 0.00 0.00 2.67
397 1323 9.850628 AGTTTCATTCATCATGTTTTATCACAG 57.149 29.630 0.00 0.00 34.06 3.66
398 1324 9.844790 GTTTCATTCATCATGTTTTATCACAGA 57.155 29.630 0.00 0.00 34.06 3.41
401 1327 9.181061 TCATTCATCATGTTTTATCACAGATGT 57.819 29.630 0.00 0.00 35.72 3.06
402 1328 9.797556 CATTCATCATGTTTTATCACAGATGTT 57.202 29.630 0.00 0.00 35.72 2.71
415 1341 7.934855 ATCACAGATGTTAAATTTCTCTGCT 57.065 32.000 14.80 0.52 37.45 4.24
416 1342 7.750229 TCACAGATGTTAAATTTCTCTGCTT 57.250 32.000 14.80 1.38 37.45 3.91
418 1344 9.453572 TCACAGATGTTAAATTTCTCTGCTTAT 57.546 29.630 14.80 0.65 37.45 1.73
473 2585 9.901172 ATTTCTTTTATATCCTTCAACCGTAGT 57.099 29.630 0.00 0.00 0.00 2.73
474 2586 8.712285 TTCTTTTATATCCTTCAACCGTAGTG 57.288 34.615 0.00 0.00 0.00 2.74
475 2587 7.844009 TCTTTTATATCCTTCAACCGTAGTGT 58.156 34.615 0.00 0.00 0.00 3.55
477 2589 7.837202 TTTATATCCTTCAACCGTAGTGTTG 57.163 36.000 0.00 0.00 45.51 3.33
486 2598 4.722194 CAACCGTAGTGTTGAATTGGATG 58.278 43.478 0.00 0.00 46.77 3.51
487 2599 3.343617 ACCGTAGTGTTGAATTGGATGG 58.656 45.455 0.00 0.00 0.00 3.51
490 2602 4.142687 CCGTAGTGTTGAATTGGATGGTTC 60.143 45.833 0.00 0.00 0.00 3.62
491 2603 4.695455 CGTAGTGTTGAATTGGATGGTTCT 59.305 41.667 0.00 0.00 0.00 3.01
493 2605 6.293955 CGTAGTGTTGAATTGGATGGTTCTTT 60.294 38.462 0.00 0.00 0.00 2.52
494 2606 5.846203 AGTGTTGAATTGGATGGTTCTTTG 58.154 37.500 0.00 0.00 0.00 2.77
495 2607 4.448732 GTGTTGAATTGGATGGTTCTTTGC 59.551 41.667 0.00 0.00 0.00 3.68
496 2608 3.574284 TGAATTGGATGGTTCTTTGCG 57.426 42.857 0.00 0.00 0.00 4.85
497 2609 3.153130 TGAATTGGATGGTTCTTTGCGA 58.847 40.909 0.00 0.00 0.00 5.10
498 2610 3.763360 TGAATTGGATGGTTCTTTGCGAT 59.237 39.130 0.00 0.00 0.00 4.58
499 2611 3.788333 ATTGGATGGTTCTTTGCGATG 57.212 42.857 0.00 0.00 0.00 3.84
500 2612 2.488204 TGGATGGTTCTTTGCGATGA 57.512 45.000 0.00 0.00 0.00 2.92
501 2613 2.358957 TGGATGGTTCTTTGCGATGAG 58.641 47.619 0.00 0.00 0.00 2.90
502 2614 2.290260 TGGATGGTTCTTTGCGATGAGT 60.290 45.455 0.00 0.00 0.00 3.41
503 2615 2.749621 GGATGGTTCTTTGCGATGAGTT 59.250 45.455 0.00 0.00 0.00 3.01
506 2743 5.277538 GGATGGTTCTTTGCGATGAGTTATC 60.278 44.000 0.00 0.00 0.00 1.75
589 3031 9.706691 TTTACATCTTTGTTAAGTAGGAGTGAG 57.293 33.333 0.00 0.00 37.28 3.51
591 3033 7.607250 ACATCTTTGTTAAGTAGGAGTGAGAG 58.393 38.462 0.00 0.00 29.55 3.20
593 3035 7.455641 TCTTTGTTAAGTAGGAGTGAGAGAG 57.544 40.000 0.00 0.00 32.98 3.20
594 3036 7.232188 TCTTTGTTAAGTAGGAGTGAGAGAGA 58.768 38.462 0.00 0.00 32.98 3.10
595 3037 7.724506 TCTTTGTTAAGTAGGAGTGAGAGAGAA 59.275 37.037 0.00 0.00 32.98 2.87
596 3038 7.834881 TTGTTAAGTAGGAGTGAGAGAGAAA 57.165 36.000 0.00 0.00 0.00 2.52
598 3040 8.057536 TGTTAAGTAGGAGTGAGAGAGAAATC 57.942 38.462 0.00 0.00 0.00 2.17
599 3041 7.891183 TGTTAAGTAGGAGTGAGAGAGAAATCT 59.109 37.037 0.00 0.00 0.00 2.40
600 3042 8.745590 GTTAAGTAGGAGTGAGAGAGAAATCTT 58.254 37.037 0.00 0.00 0.00 2.40
601 3043 9.976776 TTAAGTAGGAGTGAGAGAGAAATCTTA 57.023 33.333 0.00 0.00 0.00 2.10
603 3045 8.463930 AGTAGGAGTGAGAGAGAAATCTTATG 57.536 38.462 0.00 0.00 0.00 1.90
604 3046 8.058847 AGTAGGAGTGAGAGAGAAATCTTATGT 58.941 37.037 0.00 0.00 0.00 2.29
606 3048 7.125391 AGGAGTGAGAGAGAAATCTTATGTCT 58.875 38.462 0.00 0.00 0.00 3.41
607 3049 7.619302 AGGAGTGAGAGAGAAATCTTATGTCTT 59.381 37.037 0.00 0.00 0.00 3.01
609 3051 9.651913 GAGTGAGAGAGAAATCTTATGTCTTTT 57.348 33.333 0.00 0.00 0.00 2.27
664 3106 4.725790 AAAAATTATGTGCCTCTGCCTC 57.274 40.909 0.00 0.00 36.33 4.70
665 3107 3.659183 AAATTATGTGCCTCTGCCTCT 57.341 42.857 0.00 0.00 36.33 3.69
666 3108 3.659183 AATTATGTGCCTCTGCCTCTT 57.341 42.857 0.00 0.00 36.33 2.85
668 3110 1.871418 TATGTGCCTCTGCCTCTTCT 58.129 50.000 0.00 0.00 36.33 2.85
671 3113 1.143684 TGTGCCTCTGCCTCTTCTTTT 59.856 47.619 0.00 0.00 36.33 2.27
672 3114 2.371841 TGTGCCTCTGCCTCTTCTTTTA 59.628 45.455 0.00 0.00 36.33 1.52
673 3115 3.181445 TGTGCCTCTGCCTCTTCTTTTAA 60.181 43.478 0.00 0.00 36.33 1.52
674 3116 3.189495 GTGCCTCTGCCTCTTCTTTTAAC 59.811 47.826 0.00 0.00 36.33 2.01
675 3117 2.750166 GCCTCTGCCTCTTCTTTTAACC 59.250 50.000 0.00 0.00 0.00 2.85
676 3118 3.560239 GCCTCTGCCTCTTCTTTTAACCT 60.560 47.826 0.00 0.00 0.00 3.50
677 3119 4.006319 CCTCTGCCTCTTCTTTTAACCTG 58.994 47.826 0.00 0.00 0.00 4.00
680 3122 3.486383 TGCCTCTTCTTTTAACCTGTGG 58.514 45.455 0.00 0.00 0.00 4.17
681 3123 2.820197 GCCTCTTCTTTTAACCTGTGGG 59.180 50.000 0.00 0.00 38.88 4.61
682 3124 3.497942 GCCTCTTCTTTTAACCTGTGGGA 60.498 47.826 0.00 0.00 36.25 4.37
684 3126 4.762251 CCTCTTCTTTTAACCTGTGGGAAG 59.238 45.833 0.00 0.00 36.25 3.46
685 3127 4.725490 TCTTCTTTTAACCTGTGGGAAGG 58.275 43.478 0.00 0.00 43.57 3.46
686 3128 4.414182 TCTTCTTTTAACCTGTGGGAAGGA 59.586 41.667 0.00 0.00 40.02 3.36
687 3129 4.094830 TCTTTTAACCTGTGGGAAGGAC 57.905 45.455 0.00 0.00 40.02 3.85
688 3130 2.963599 TTTAACCTGTGGGAAGGACC 57.036 50.000 0.00 0.00 40.02 4.46
689 3131 1.822425 TTAACCTGTGGGAAGGACCA 58.178 50.000 0.00 0.00 40.02 4.02
691 3133 0.697854 AACCTGTGGGAAGGACCAGT 60.698 55.000 0.00 0.00 42.20 4.00
692 3134 1.128188 ACCTGTGGGAAGGACCAGTC 61.128 60.000 0.00 0.00 42.20 3.51
693 3135 1.842381 CCTGTGGGAAGGACCAGTCC 61.842 65.000 8.88 8.88 42.20 3.85
708 3313 6.875972 GACCAGTCCATATAGACCCATATT 57.124 41.667 0.00 0.00 37.49 1.28
771 3376 4.696479 ATTCATATCTCCACCTGTCACC 57.304 45.455 0.00 0.00 0.00 4.02
775 3380 0.972983 ATCTCCACCTGTCACCCTCG 60.973 60.000 0.00 0.00 0.00 4.63
776 3381 2.603473 TCCACCTGTCACCCTCGG 60.603 66.667 0.00 0.00 0.00 4.63
841 3447 2.289547 GCCGCTTAAACAAACAGTCTCA 59.710 45.455 0.00 0.00 0.00 3.27
846 3452 4.518217 CTTAAACAAACAGTCTCACAGCG 58.482 43.478 0.00 0.00 0.00 5.18
908 3514 1.802337 CGGTCCAGTCTCCACGAACA 61.802 60.000 0.00 0.00 0.00 3.18
910 3516 0.319641 GTCCAGTCTCCACGAACACC 60.320 60.000 0.00 0.00 0.00 4.16
1319 4299 1.836802 GAGAGGGAGAAATGGTGCTCT 59.163 52.381 0.00 0.00 0.00 4.09
1472 4452 1.130054 TCCTGGCTGAAACTGCTCCT 61.130 55.000 0.00 0.00 0.00 3.69
1473 4453 0.251077 CCTGGCTGAAACTGCTCCTT 60.251 55.000 0.00 0.00 0.00 3.36
1509 4498 1.236616 TGACCATGTTTGCCTGCTCG 61.237 55.000 0.00 0.00 0.00 5.03
1511 4500 0.036164 ACCATGTTTGCCTGCTCGTA 59.964 50.000 0.00 0.00 0.00 3.43
1584 4582 1.778334 TGTCAGATTGGACACGAACG 58.222 50.000 0.00 0.00 42.56 3.95
1599 4597 3.300853 CACGAACGAGTGTATTGTAGCTG 59.699 47.826 0.00 0.00 37.35 4.24
1625 4623 3.221771 TGAAGACATGTCCCTTTGTTGG 58.778 45.455 22.21 0.00 0.00 3.77
1685 4683 8.123639 TGGAGACCTGTAATAATACTGCTATC 57.876 38.462 0.00 0.00 32.98 2.08
1717 4715 1.327303 AATGCCTTGCGGTTTTCTGA 58.673 45.000 0.00 0.00 0.00 3.27
1725 4723 0.169009 GCGGTTTTCTGATGCCTCAC 59.831 55.000 0.00 0.00 0.00 3.51
1737 4735 6.291377 TCTGATGCCTCACAAATTATCCTAC 58.709 40.000 0.00 0.00 0.00 3.18
2147 5147 3.756117 CTTGTCTGGGTAAGCTTCCTTT 58.244 45.455 0.00 0.00 32.47 3.11
2318 5318 5.015817 TCCATGTAATAACTCCCCCTGTTTT 59.984 40.000 0.00 0.00 0.00 2.43
2319 5319 5.127031 CCATGTAATAACTCCCCCTGTTTTG 59.873 44.000 0.00 0.00 0.00 2.44
2333 5333 6.883756 CCCCCTGTTTTGCATATTAATTGTTT 59.116 34.615 0.00 0.00 0.00 2.83
2399 5399 3.215151 TCAGTGTGTTAATTTTCCCGCA 58.785 40.909 0.00 0.00 0.00 5.69
2498 5500 6.494835 AGTGAATTAAATCTTGCTTGGTTCCT 59.505 34.615 0.00 0.00 0.00 3.36
2593 5597 4.437772 AAGTAGTGAGCTAAACGGTCTC 57.562 45.455 0.00 0.00 40.75 3.36
2689 5693 6.254157 GCAAACACAGGTTGCATTTATATCAG 59.746 38.462 14.33 0.00 37.30 2.90
2727 5738 2.687425 TGTCTTGTGGTGGTCATTTGTG 59.313 45.455 0.00 0.00 0.00 3.33
2734 5745 1.732259 GGTGGTCATTTGTGCTACTCG 59.268 52.381 0.00 0.00 0.00 4.18
2753 5764 2.766263 TCGGTGAGCTAGGAACAATGAT 59.234 45.455 0.00 0.00 0.00 2.45
2933 5949 1.670811 GTCATTTGAGCATACCGTGGG 59.329 52.381 0.00 0.00 0.00 4.61
2997 6013 2.853290 AACAGCACAGCAGCTTGGC 61.853 57.895 6.92 6.92 43.70 4.52
3100 6116 7.603651 TCTGTACAACAAAAAGGCTAAAAACA 58.396 30.769 0.00 0.00 0.00 2.83
3123 6139 6.868864 ACATTATACATGTAAGGATGCGACTC 59.131 38.462 10.14 0.00 0.00 3.36
3137 6153 1.668101 CGACTCTACCTGTCCAGCCC 61.668 65.000 0.00 0.00 0.00 5.19
3221 6237 5.835113 TCAGGCTATAAAAAGCATTGGAC 57.165 39.130 0.00 0.00 44.64 4.02
3390 6409 9.757227 ATCTTATCTACAGACTGTATTTTCTGC 57.243 33.333 15.58 0.00 42.67 4.26
3407 6426 4.826274 TCTGCTGTTGGTAGCTCTTATT 57.174 40.909 0.00 0.00 44.01 1.40
3412 6431 6.234920 TGCTGTTGGTAGCTCTTATTTACAA 58.765 36.000 0.00 0.00 44.01 2.41
3479 6512 5.076182 TGTTGATCTGTTTATTTCAGGCCA 58.924 37.500 5.01 0.00 34.15 5.36
3513 6546 3.126000 GCTTCCTCGTGATCTGGAAAAAG 59.874 47.826 0.00 0.01 39.10 2.27
3520 6553 4.511454 TCGTGATCTGGAAAAAGTTGACAG 59.489 41.667 0.00 0.00 0.00 3.51
3521 6554 4.511454 CGTGATCTGGAAAAAGTTGACAGA 59.489 41.667 0.00 0.00 41.79 3.41
3526 6559 8.733458 TGATCTGGAAAAAGTTGACAGATAATG 58.267 33.333 5.56 0.00 45.83 1.90
3541 6574 6.634805 ACAGATAATGTGACCTGTTCTACAG 58.365 40.000 0.00 0.00 42.57 2.74
3613 6646 2.771943 ACCCACAGTTCTGAGTTCTTGA 59.228 45.455 6.83 0.00 0.00 3.02
3628 6661 5.728471 AGTTCTTGATGATCATGACGAGTT 58.272 37.500 14.30 0.00 31.43 3.01
3786 6827 7.230510 TGTGTTTTCAGGATGCTTTGTAGTATT 59.769 33.333 0.00 0.00 34.76 1.89
3787 6828 7.750903 GTGTTTTCAGGATGCTTTGTAGTATTC 59.249 37.037 0.00 0.00 34.76 1.75
3792 6833 5.240183 CAGGATGCTTTGTAGTATTCCCATG 59.760 44.000 0.00 0.00 0.00 3.66
3812 6853 2.675844 TGTCGAAGTTTGTTGTGTGAGG 59.324 45.455 0.00 0.00 0.00 3.86
3826 6867 4.619973 TGTGTGAGGAAATGTCATTTTGC 58.380 39.130 12.04 5.83 31.47 3.68
3975 7019 9.448438 TGCAAGTTGTCATTTACACTATATTCT 57.552 29.630 4.48 0.00 38.00 2.40
3976 7020 9.922305 GCAAGTTGTCATTTACACTATATTCTC 57.078 33.333 4.48 0.00 38.00 2.87
3991 7035 8.701895 CACTATATTCTCAGGGGTAAGTAACAA 58.298 37.037 0.00 0.00 0.00 2.83
4093 7141 6.016860 TCTCATCAACACAGGAACAAAATGAG 60.017 38.462 0.00 0.00 39.13 2.90
4094 7142 5.827267 TCATCAACACAGGAACAAAATGAGA 59.173 36.000 0.00 0.00 0.00 3.27
4096 7144 6.135290 TCAACACAGGAACAAAATGAGAAG 57.865 37.500 0.00 0.00 0.00 2.85
4097 7145 5.885352 TCAACACAGGAACAAAATGAGAAGA 59.115 36.000 0.00 0.00 0.00 2.87
4098 7146 6.376864 TCAACACAGGAACAAAATGAGAAGAA 59.623 34.615 0.00 0.00 0.00 2.52
4136 7184 0.325765 ACTTCCTGCTACTCCCTCCC 60.326 60.000 0.00 0.00 0.00 4.30
4153 7201 8.074991 ACTCCCTCCCTAAAGAAATATAAGAGT 58.925 37.037 0.00 0.00 0.00 3.24
4188 7236 9.566432 CACTATTTTAGGGATCTAAATGCTCTT 57.434 33.333 0.00 0.00 42.84 2.85
4267 7315 2.421529 GGTGTGGAACCTGAAGAAGTGT 60.422 50.000 0.00 0.00 46.55 3.55
4499 7553 2.493973 GTCAGCCTCTGCCTCTCG 59.506 66.667 0.00 0.00 38.69 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 8.377799 AGAGGCATTTGAGTTTAAATTGGAAAT 58.622 29.630 0.00 0.00 0.00 2.17
111 112 6.522054 TCAGGAAACAGAAAGTAGTCGATTT 58.478 36.000 0.00 0.00 0.00 2.17
125 126 1.081892 CGACTGCCATCAGGAAACAG 58.918 55.000 0.00 0.00 44.54 3.16
134 135 1.869767 CTAAAGATGCCGACTGCCATC 59.130 52.381 0.00 0.00 40.16 3.51
158 159 5.807011 CGATCTATCAGTTTCACATGTGACA 59.193 40.000 27.88 19.32 39.66 3.58
170 171 8.524487 GGTCATACTAAATCCGATCTATCAGTT 58.476 37.037 0.00 0.00 0.00 3.16
174 175 7.406031 TGGGTCATACTAAATCCGATCTATC 57.594 40.000 0.00 0.00 0.00 2.08
193 194 8.094798 TCTAATATTATTTCGCACATTGGGTC 57.905 34.615 0.00 0.00 0.00 4.46
236 237 9.723601 ATTTGCACAATGTTTATCCATTTAACT 57.276 25.926 0.00 0.00 32.81 2.24
281 282 7.068226 CCCCAAGTCAGTAATATTTAAACCCAG 59.932 40.741 0.00 0.00 0.00 4.45
286 287 9.895138 GTAGTCCCCAAGTCAGTAATATTTAAA 57.105 33.333 0.00 0.00 0.00 1.52
287 288 8.199449 CGTAGTCCCCAAGTCAGTAATATTTAA 58.801 37.037 0.00 0.00 0.00 1.52
288 289 7.342799 ACGTAGTCCCCAAGTCAGTAATATTTA 59.657 37.037 0.00 0.00 29.74 1.40
291 292 5.068723 CACGTAGTCCCCAAGTCAGTAATAT 59.931 44.000 0.00 0.00 41.61 1.28
292 293 4.400251 CACGTAGTCCCCAAGTCAGTAATA 59.600 45.833 0.00 0.00 41.61 0.98
294 295 2.559668 CACGTAGTCCCCAAGTCAGTAA 59.440 50.000 0.00 0.00 41.61 2.24
295 296 2.165167 CACGTAGTCCCCAAGTCAGTA 58.835 52.381 0.00 0.00 41.61 2.74
297 298 0.966920 ACACGTAGTCCCCAAGTCAG 59.033 55.000 0.00 0.00 41.61 3.51
298 299 1.416243 AACACGTAGTCCCCAAGTCA 58.584 50.000 0.00 0.00 41.61 3.41
301 302 1.403249 CCGTAACACGTAGTCCCCAAG 60.403 57.143 0.00 0.00 41.61 3.61
302 303 0.602562 CCGTAACACGTAGTCCCCAA 59.397 55.000 0.00 0.00 41.61 4.12
306 307 2.485814 AGTCTTCCGTAACACGTAGTCC 59.514 50.000 0.00 0.00 41.61 3.85
307 308 3.820777 AGTCTTCCGTAACACGTAGTC 57.179 47.619 0.00 0.00 41.61 2.59
309 310 4.293415 ACAAAGTCTTCCGTAACACGTAG 58.707 43.478 0.00 0.00 40.58 3.51
310 311 4.305989 ACAAAGTCTTCCGTAACACGTA 57.694 40.909 0.00 0.00 40.58 3.57
312 313 4.525411 AAACAAAGTCTTCCGTAACACG 57.475 40.909 0.00 0.00 42.11 4.49
313 314 7.687445 TCTTAAAACAAAGTCTTCCGTAACAC 58.313 34.615 0.00 0.00 0.00 3.32
315 316 8.134905 TCTCTTAAAACAAAGTCTTCCGTAAC 57.865 34.615 0.00 0.00 0.00 2.50
316 317 8.721019 TTCTCTTAAAACAAAGTCTTCCGTAA 57.279 30.769 0.00 0.00 0.00 3.18
317 318 7.042254 GCTTCTCTTAAAACAAAGTCTTCCGTA 60.042 37.037 0.00 0.00 0.00 4.02
319 320 6.136743 GCTTCTCTTAAAACAAAGTCTTCCG 58.863 40.000 0.00 0.00 0.00 4.30
320 321 7.027778 TGCTTCTCTTAAAACAAAGTCTTCC 57.972 36.000 0.00 0.00 0.00 3.46
324 325 9.709600 GCTATATGCTTCTCTTAAAACAAAGTC 57.290 33.333 0.00 0.00 38.95 3.01
343 1269 3.436700 TGTGACACCGTCAGCTATATG 57.563 47.619 2.45 0.00 43.57 1.78
344 1270 4.465632 TTTGTGACACCGTCAGCTATAT 57.534 40.909 2.45 0.00 43.57 0.86
347 1273 2.831685 ATTTGTGACACCGTCAGCTA 57.168 45.000 2.45 0.00 43.57 3.32
349 1275 4.419522 AATTATTTGTGACACCGTCAGC 57.580 40.909 2.45 0.00 43.57 4.26
350 1276 6.721571 ACTAATTATTTGTGACACCGTCAG 57.278 37.500 2.45 0.00 43.57 3.51
352 1278 7.577979 TGAAACTAATTATTTGTGACACCGTC 58.422 34.615 2.45 0.00 0.00 4.79
354 1280 8.964420 AATGAAACTAATTATTTGTGACACCG 57.036 30.769 2.45 0.00 0.00 4.94
372 1298 9.844790 TCTGTGATAAAACATGATGAATGAAAC 57.155 29.630 0.00 0.00 38.72 2.78
389 1315 9.453572 AGCAGAGAAATTTAACATCTGTGATAA 57.546 29.630 16.94 0.00 39.63 1.75
390 1316 9.453572 AAGCAGAGAAATTTAACATCTGTGATA 57.546 29.630 16.94 0.00 39.63 2.15
392 1318 7.750229 AAGCAGAGAAATTTAACATCTGTGA 57.250 32.000 16.94 0.00 39.63 3.58
465 2577 3.756434 CCATCCAATTCAACACTACGGTT 59.244 43.478 0.00 0.00 0.00 4.44
466 2578 3.244770 ACCATCCAATTCAACACTACGGT 60.245 43.478 0.00 0.00 0.00 4.83
467 2579 3.343617 ACCATCCAATTCAACACTACGG 58.656 45.455 0.00 0.00 0.00 4.02
468 2580 4.695455 AGAACCATCCAATTCAACACTACG 59.305 41.667 0.00 0.00 0.00 3.51
469 2581 6.575162 AAGAACCATCCAATTCAACACTAC 57.425 37.500 0.00 0.00 0.00 2.73
471 2583 5.739935 GCAAAGAACCATCCAATTCAACACT 60.740 40.000 0.00 0.00 0.00 3.55
472 2584 4.448732 GCAAAGAACCATCCAATTCAACAC 59.551 41.667 0.00 0.00 0.00 3.32
473 2585 4.630111 GCAAAGAACCATCCAATTCAACA 58.370 39.130 0.00 0.00 0.00 3.33
474 2586 3.674753 CGCAAAGAACCATCCAATTCAAC 59.325 43.478 0.00 0.00 0.00 3.18
475 2587 3.571828 TCGCAAAGAACCATCCAATTCAA 59.428 39.130 0.00 0.00 0.00 2.69
477 2589 3.848272 TCGCAAAGAACCATCCAATTC 57.152 42.857 0.00 0.00 0.00 2.17
478 2590 3.763360 TCATCGCAAAGAACCATCCAATT 59.237 39.130 0.00 0.00 0.00 2.32
479 2591 3.355378 TCATCGCAAAGAACCATCCAAT 58.645 40.909 0.00 0.00 0.00 3.16
482 2594 2.359900 ACTCATCGCAAAGAACCATCC 58.640 47.619 0.00 0.00 0.00 3.51
483 2595 5.294306 TGATAACTCATCGCAAAGAACCATC 59.706 40.000 0.00 0.00 36.33 3.51
484 2596 5.185454 TGATAACTCATCGCAAAGAACCAT 58.815 37.500 0.00 0.00 36.33 3.55
486 2598 5.545658 TTGATAACTCATCGCAAAGAACC 57.454 39.130 0.00 0.00 36.33 3.62
487 2599 8.452989 AAAATTGATAACTCATCGCAAAGAAC 57.547 30.769 0.00 0.00 36.33 3.01
564 3006 9.085645 TCTCACTCCTACTTAACAAAGATGTAA 57.914 33.333 0.00 0.00 39.40 2.41
565 3007 8.645814 TCTCACTCCTACTTAACAAAGATGTA 57.354 34.615 0.00 0.00 39.40 2.29
567 3009 7.831753 TCTCTCACTCCTACTTAACAAAGATG 58.168 38.462 0.00 0.00 0.00 2.90
568 3010 7.891183 TCTCTCTCACTCCTACTTAACAAAGAT 59.109 37.037 0.00 0.00 0.00 2.40
569 3011 7.232188 TCTCTCTCACTCCTACTTAACAAAGA 58.768 38.462 0.00 0.00 0.00 2.52
570 3012 7.455641 TCTCTCTCACTCCTACTTAACAAAG 57.544 40.000 0.00 0.00 0.00 2.77
573 3015 7.891183 AGATTTCTCTCTCACTCCTACTTAACA 59.109 37.037 0.00 0.00 0.00 2.41
574 3016 8.288689 AGATTTCTCTCTCACTCCTACTTAAC 57.711 38.462 0.00 0.00 0.00 2.01
577 3019 8.912988 CATAAGATTTCTCTCTCACTCCTACTT 58.087 37.037 0.00 0.00 0.00 2.24
578 3020 8.058847 ACATAAGATTTCTCTCTCACTCCTACT 58.941 37.037 0.00 0.00 0.00 2.57
580 3022 8.278639 AGACATAAGATTTCTCTCTCACTCCTA 58.721 37.037 0.00 0.00 0.00 2.94
581 3023 7.125391 AGACATAAGATTTCTCTCTCACTCCT 58.875 38.462 0.00 0.00 0.00 3.69
582 3024 7.346751 AGACATAAGATTTCTCTCTCACTCC 57.653 40.000 0.00 0.00 0.00 3.85
583 3025 9.651913 AAAAGACATAAGATTTCTCTCTCACTC 57.348 33.333 0.00 0.00 0.00 3.51
643 3085 4.347607 AGAGGCAGAGGCACATAATTTTT 58.652 39.130 0.00 0.00 43.71 1.94
644 3086 3.973425 AGAGGCAGAGGCACATAATTTT 58.027 40.909 0.00 0.00 43.71 1.82
645 3087 3.659183 AGAGGCAGAGGCACATAATTT 57.341 42.857 0.00 0.00 43.71 1.82
647 3089 2.776536 AGAAGAGGCAGAGGCACATAAT 59.223 45.455 0.00 0.00 43.71 1.28
648 3090 2.191400 AGAAGAGGCAGAGGCACATAA 58.809 47.619 0.00 0.00 43.71 1.90
650 3092 0.990374 AAGAAGAGGCAGAGGCACAT 59.010 50.000 0.00 0.00 43.71 3.21
654 3096 2.750166 GGTTAAAAGAAGAGGCAGAGGC 59.250 50.000 0.00 0.00 40.13 4.70
655 3097 4.006319 CAGGTTAAAAGAAGAGGCAGAGG 58.994 47.826 0.00 0.00 0.00 3.69
656 3098 4.453819 CACAGGTTAAAAGAAGAGGCAGAG 59.546 45.833 0.00 0.00 0.00 3.35
657 3099 4.389374 CACAGGTTAAAAGAAGAGGCAGA 58.611 43.478 0.00 0.00 0.00 4.26
658 3100 3.503748 CCACAGGTTAAAAGAAGAGGCAG 59.496 47.826 0.00 0.00 0.00 4.85
659 3101 3.486383 CCACAGGTTAAAAGAAGAGGCA 58.514 45.455 0.00 0.00 0.00 4.75
661 3103 4.367039 TCCCACAGGTTAAAAGAAGAGG 57.633 45.455 0.00 0.00 0.00 3.69
662 3104 4.762251 CCTTCCCACAGGTTAAAAGAAGAG 59.238 45.833 0.00 0.00 32.83 2.85
663 3105 4.414182 TCCTTCCCACAGGTTAAAAGAAGA 59.586 41.667 0.00 0.00 35.15 2.87
664 3106 4.519350 GTCCTTCCCACAGGTTAAAAGAAG 59.481 45.833 0.00 0.00 35.15 2.85
665 3107 4.466827 GTCCTTCCCACAGGTTAAAAGAA 58.533 43.478 0.00 0.00 35.15 2.52
666 3108 3.181437 GGTCCTTCCCACAGGTTAAAAGA 60.181 47.826 0.00 0.00 35.15 2.52
668 3110 2.514582 TGGTCCTTCCCACAGGTTAAAA 59.485 45.455 0.00 0.00 35.15 1.52
671 3113 1.358152 CTGGTCCTTCCCACAGGTTA 58.642 55.000 0.00 0.00 35.15 2.85
672 3114 0.697854 ACTGGTCCTTCCCACAGGTT 60.698 55.000 0.00 0.00 35.15 3.50
673 3115 1.073706 ACTGGTCCTTCCCACAGGT 60.074 57.895 0.00 0.00 35.15 4.00
674 3116 1.679898 GACTGGTCCTTCCCACAGG 59.320 63.158 0.00 0.00 35.34 4.00
675 3117 1.679898 GGACTGGTCCTTCCCACAG 59.320 63.158 12.09 0.00 46.16 3.66
676 3118 3.900888 GGACTGGTCCTTCCCACA 58.099 61.111 12.09 0.00 46.16 4.17
685 3127 6.875972 AATATGGGTCTATATGGACTGGTC 57.124 41.667 17.58 2.45 36.55 4.02
686 3128 7.253421 TGTAATATGGGTCTATATGGACTGGT 58.747 38.462 17.58 7.38 36.55 4.00
687 3129 7.633772 GCTGTAATATGGGTCTATATGGACTGG 60.634 44.444 17.58 0.36 36.55 4.00
688 3130 7.268586 GCTGTAATATGGGTCTATATGGACTG 58.731 42.308 17.58 0.00 36.55 3.51
689 3131 6.384305 GGCTGTAATATGGGTCTATATGGACT 59.616 42.308 17.58 2.39 36.55 3.85
691 3133 5.665812 GGGCTGTAATATGGGTCTATATGGA 59.334 44.000 0.00 0.00 0.00 3.41
692 3134 5.428457 TGGGCTGTAATATGGGTCTATATGG 59.572 44.000 0.00 0.00 0.00 2.74
693 3135 6.408548 CCTGGGCTGTAATATGGGTCTATATG 60.409 46.154 0.00 0.00 0.00 1.78
694 3136 5.667626 CCTGGGCTGTAATATGGGTCTATAT 59.332 44.000 0.00 0.00 0.00 0.86
695 3137 5.030147 CCTGGGCTGTAATATGGGTCTATA 58.970 45.833 0.00 0.00 0.00 1.31
707 3312 1.407712 GGTTAATCGCCTGGGCTGTAA 60.408 52.381 10.04 2.88 39.32 2.41
708 3313 0.179468 GGTTAATCGCCTGGGCTGTA 59.821 55.000 10.04 0.00 39.32 2.74
745 3350 7.038659 GTGACAGGTGGAGATATGAATATAGC 58.961 42.308 0.00 0.00 0.00 2.97
775 3380 3.547513 CCTAGTAGCACGGCCCCC 61.548 72.222 0.00 0.00 0.00 5.40
776 3381 3.547513 CCCTAGTAGCACGGCCCC 61.548 72.222 0.00 0.00 0.00 5.80
841 3447 2.049063 GTGGCTTCGTCTCGCTGT 60.049 61.111 0.00 0.00 0.00 4.40
908 3514 2.183555 GATTCGCTCGGTTCCGGT 59.816 61.111 11.37 0.00 0.00 5.28
910 3516 1.589196 GAGGATTCGCTCGGTTCCG 60.589 63.158 4.74 4.74 33.35 4.30
966 3577 1.057275 GGGTGGGAGGGAGGAGAATC 61.057 65.000 0.00 0.00 0.00 2.52
1078 4057 3.237741 CCGCATCCCTCTCCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
1155 4134 2.351276 GTGATGGCGAGGTGGGTT 59.649 61.111 0.00 0.00 0.00 4.11
1373 4353 3.021788 GAGCTCGCACGAGATCGC 61.022 66.667 23.33 8.95 45.66 4.58
1485 4465 1.218854 GGCAAACATGGTCATGGCC 59.781 57.895 10.20 10.20 42.91 5.36
1496 4485 1.996898 CGTTATACGAGCAGGCAAACA 59.003 47.619 0.00 0.00 46.05 2.83
1509 4498 7.215844 CGTTGCCGAGTAATAAATCGTTATAC 58.784 38.462 0.00 0.00 37.23 1.47
1511 4500 5.176223 CCGTTGCCGAGTAATAAATCGTTAT 59.824 40.000 0.00 0.00 37.23 1.89
1584 4582 5.073311 TCAGTTCCAGCTACAATACACTC 57.927 43.478 0.00 0.00 0.00 3.51
1599 4597 3.425162 AAGGGACATGTCTTCAGTTCC 57.575 47.619 24.50 15.13 0.00 3.62
1649 4647 4.920640 ACAGGTCTCCATACAAGATACG 57.079 45.455 0.00 0.00 0.00 3.06
1685 4683 5.036737 CGCAAGGCATTAATTAAAGTGGAG 58.963 41.667 1.21 0.00 0.00 3.86
1717 4715 5.290493 TCGTAGGATAATTTGTGAGGCAT 57.710 39.130 0.00 0.00 0.00 4.40
1814 4814 5.833667 TCTTACAAGAGAACTCAGTCCTGAA 59.166 40.000 4.64 0.00 39.39 3.02
1847 4847 0.667487 CTCTCCAAAGCGACGAAGCA 60.667 55.000 0.00 0.00 40.15 3.91
2318 5318 8.789825 AGGATTTTGCAAACAATTAATATGCA 57.210 26.923 12.39 11.73 44.54 3.96
2333 5333 2.284754 TGGCACAGTAGGATTTTGCA 57.715 45.000 0.00 0.00 34.76 4.08
2345 5345 8.184192 CCTGATAAGTTACTTTAATTGGCACAG 58.816 37.037 1.94 0.00 42.39 3.66
2379 5379 3.634568 TGCGGGAAAATTAACACACTG 57.365 42.857 0.00 0.00 0.00 3.66
2525 5527 6.208994 GTCTTACACTTCTTTACAGAGGGAGA 59.791 42.308 0.00 0.00 30.09 3.71
2593 5597 6.702329 AGTACTCCCTCTGTAAAGAAATGTG 58.298 40.000 0.00 0.00 0.00 3.21
2689 5693 5.531287 ACAAGACAAAAGGTGGACACTATTC 59.469 40.000 2.13 0.00 0.00 1.75
2727 5738 1.065851 GTTCCTAGCTCACCGAGTAGC 59.934 57.143 0.00 0.00 39.08 3.58
2734 5745 5.163405 TGACTATCATTGTTCCTAGCTCACC 60.163 44.000 0.00 0.00 0.00 4.02
2753 5764 6.070824 TCCATGTATCAGAAGCAAACTGACTA 60.071 38.462 9.07 1.66 45.19 2.59
2933 5949 6.349300 TGAATGACTTTCTGGTATAGGAAGC 58.651 40.000 3.08 0.00 44.62 3.86
3100 6116 7.233389 AGAGTCGCATCCTTACATGTATAAT 57.767 36.000 6.36 0.00 0.00 1.28
3123 6139 0.400213 TTTGTGGGCTGGACAGGTAG 59.600 55.000 1.01 0.00 0.00 3.18
3221 6237 2.121564 CTTGTGAACAGCCCACGCAG 62.122 60.000 0.00 0.00 37.34 5.18
3390 6409 8.230486 CAGTTTGTAAATAAGAGCTACCAACAG 58.770 37.037 0.00 0.00 0.00 3.16
3412 6431 9.950680 CAAGAATGTACAACAGAAAATACAGTT 57.049 29.630 0.00 0.00 31.41 3.16
3513 6546 5.934625 AGAACAGGTCACATTATCTGTCAAC 59.065 40.000 0.00 0.00 39.26 3.18
3520 6553 7.324178 ACTTCTGTAGAACAGGTCACATTATC 58.676 38.462 7.18 0.00 45.94 1.75
3521 6554 7.179338 AGACTTCTGTAGAACAGGTCACATTAT 59.821 37.037 14.65 0.00 45.94 1.28
3526 6559 4.857509 AGACTTCTGTAGAACAGGTCAC 57.142 45.455 14.65 4.31 45.94 3.67
3581 6614 6.235664 TCAGAACTGTGGGTAAAATACTTCC 58.764 40.000 1.73 0.00 0.00 3.46
3613 6646 5.077134 TCACTCAAACTCGTCATGATCAT 57.923 39.130 1.18 1.18 0.00 2.45
3628 6661 6.428083 TCCCTACAACTACAAATCACTCAA 57.572 37.500 0.00 0.00 0.00 3.02
3695 6728 5.045942 TGGACTTATGGTTGTCTAAGATGCA 60.046 40.000 0.00 0.00 34.01 3.96
3786 6827 2.616376 CACAACAAACTTCGACATGGGA 59.384 45.455 0.00 0.00 0.00 4.37
3787 6828 2.357637 ACACAACAAACTTCGACATGGG 59.642 45.455 0.00 0.00 0.00 4.00
3792 6833 2.933906 TCCTCACACAACAAACTTCGAC 59.066 45.455 0.00 0.00 0.00 4.20
3812 6853 2.402305 TGCACGGCAAAATGACATTTC 58.598 42.857 13.68 2.80 34.76 2.17
3826 6867 1.580893 CGATCGTTTGCATGCACGG 60.581 57.895 22.58 12.63 37.02 4.94
3975 7019 5.586155 TCCAAATTGTTACTTACCCCTGA 57.414 39.130 0.00 0.00 0.00 3.86
3976 7020 7.116736 AGTATCCAAATTGTTACTTACCCCTG 58.883 38.462 0.00 0.00 0.00 4.45
4267 7315 3.544684 TCTGTTTCTCTGCAGCTGAAAA 58.455 40.909 25.35 17.84 32.50 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.