Multiple sequence alignment - TraesCS5B01G356300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G356300 chr5B 100.000 8111 0 0 1 8111 536044929 536053039 0.000000e+00 14979.0
1 TraesCS5B01G356300 chr5B 86.892 946 81 24 3539 4445 19011161 19012102 0.000000e+00 1020.0
2 TraesCS5B01G356300 chr5B 86.581 313 34 6 3433 3740 536047729 536048038 1.010000e-88 339.0
3 TraesCS5B01G356300 chr5B 86.581 313 34 6 2801 3110 536048361 536048668 1.010000e-88 339.0
4 TraesCS5B01G356300 chr5B 86.364 198 21 5 2913 3105 19011163 19011359 2.290000e-50 211.0
5 TraesCS5B01G356300 chr5B 86.813 182 22 1 2523 2702 536047019 536047200 1.380000e-47 202.0
6 TraesCS5B01G356300 chr5B 86.813 182 22 1 2091 2272 536047451 536047630 1.380000e-47 202.0
7 TraesCS5B01G356300 chr5D 92.891 3967 183 40 3433 7311 440644024 440647979 0.000000e+00 5672.0
8 TraesCS5B01G356300 chr5D 87.830 1931 137 53 559 2457 440641930 440643794 0.000000e+00 2174.0
9 TraesCS5B01G356300 chr5D 93.085 564 28 7 7552 8111 440648253 440648809 0.000000e+00 815.0
10 TraesCS5B01G356300 chr5D 92.377 551 32 8 2567 3110 440643790 440644337 0.000000e+00 776.0
11 TraesCS5B01G356300 chr5D 84.411 526 58 16 11 517 440641398 440641918 5.650000e-136 496.0
12 TraesCS5B01G356300 chr5D 90.780 282 16 6 7244 7519 440647980 440648257 1.290000e-97 368.0
13 TraesCS5B01G356300 chr5D 82.096 458 50 18 3115 3559 440643356 440643794 5.980000e-96 363.0
14 TraesCS5B01G356300 chr5D 85.612 139 18 1 2135 2273 440643790 440643926 2.360000e-30 145.0
15 TraesCS5B01G356300 chr5A 93.206 2458 108 30 4925 7327 556682566 556685019 0.000000e+00 3559.0
16 TraesCS5B01G356300 chr5A 90.305 2259 94 35 874 3105 556679063 556681223 0.000000e+00 2843.0
17 TraesCS5B01G356300 chr5A 91.778 1423 76 20 3433 4818 556680915 556682333 0.000000e+00 1941.0
18 TraesCS5B01G356300 chr5A 89.674 736 40 7 6368 7072 134456469 134457199 0.000000e+00 905.0
19 TraesCS5B01G356300 chr5A 93.064 519 23 7 7593 8111 556685793 556686298 0.000000e+00 747.0
20 TraesCS5B01G356300 chr5A 87.329 292 21 6 1558 1834 557962073 557962363 3.650000e-83 320.0
21 TraesCS5B01G356300 chr5A 88.889 171 13 3 572 736 556678839 556679009 1.070000e-48 206.0
22 TraesCS5B01G356300 chr5A 86.339 183 22 1 2523 2702 556680233 556680415 6.420000e-46 196.0
23 TraesCS5B01G356300 chr2B 87.512 1025 81 29 3463 4445 761955532 761956551 0.000000e+00 1140.0
24 TraesCS5B01G356300 chr2B 91.535 697 40 8 1030 1710 219844808 219844115 0.000000e+00 942.0
25 TraesCS5B01G356300 chr2B 89.383 697 44 9 1030 1710 684093628 684092946 0.000000e+00 850.0
26 TraesCS5B01G356300 chr2B 88.652 282 21 9 2831 3105 761955532 761955809 4.690000e-87 333.0
27 TraesCS5B01G356300 chr2B 93.458 214 14 0 1615 1828 761956585 761956798 1.310000e-82 318.0
28 TraesCS5B01G356300 chr2B 93.827 162 8 2 6552 6713 184669213 184669372 8.130000e-60 243.0
29 TraesCS5B01G356300 chr2B 92.771 166 9 3 6552 6717 103990417 103990579 3.780000e-58 237.0
30 TraesCS5B01G356300 chr4A 86.730 1055 92 25 3433 4445 647886180 647887228 0.000000e+00 1129.0
31 TraesCS5B01G356300 chr4A 92.491 546 30 9 2567 3105 647885947 647886488 0.000000e+00 771.0
32 TraesCS5B01G356300 chr4A 91.650 515 29 10 991 1500 647885288 647885793 0.000000e+00 701.0
33 TraesCS5B01G356300 chr4A 92.727 220 16 0 1615 1834 647887262 647887481 1.310000e-82 318.0
34 TraesCS5B01G356300 chr4A 94.156 154 8 1 2305 2457 647885798 647885951 4.890000e-57 233.0
35 TraesCS5B01G356300 chr4A 89.933 149 15 0 3411 3559 647885803 647885951 8.310000e-45 193.0
36 TraesCS5B01G356300 chr4A 84.173 139 19 2 2135 2273 647885947 647886082 1.840000e-26 132.0
37 TraesCS5B01G356300 chr7B 86.888 1022 86 27 3467 4445 675573374 675574390 0.000000e+00 1101.0
38 TraesCS5B01G356300 chr7B 86.634 1025 90 25 3463 4445 688959703 688960722 0.000000e+00 1090.0
39 TraesCS5B01G356300 chr7B 91.691 698 39 8 1030 1711 605714272 605713578 0.000000e+00 950.0
40 TraesCS5B01G356300 chr7B 89.007 282 21 9 2831 3105 688959703 688959981 2.800000e-89 340.0
41 TraesCS5B01G356300 chr7B 88.129 278 27 5 2833 3105 675573372 675573648 7.850000e-85 326.0
42 TraesCS5B01G356300 chr7B 92.727 220 16 0 1615 1834 688960756 688960975 1.310000e-82 318.0
43 TraesCS5B01G356300 chr7B 93.827 162 8 2 6552 6713 42780635 42780794 8.130000e-60 243.0
44 TraesCS5B01G356300 chr7B 92.899 169 9 3 6546 6713 713863357 713863191 8.130000e-60 243.0
45 TraesCS5B01G356300 chr7B 93.827 162 8 2 6552 6713 747446356 747446197 8.130000e-60 243.0
46 TraesCS5B01G356300 chr1B 84.215 1096 96 35 1122 2181 615798154 615797100 0.000000e+00 994.0
47 TraesCS5B01G356300 chr1B 79.859 566 66 23 1686 2241 543850284 543849757 3.580000e-98 370.0
48 TraesCS5B01G356300 chr1B 89.697 165 17 0 2523 2687 641575011 641574847 2.290000e-50 211.0
49 TraesCS5B01G356300 chr1B 89.091 165 18 0 2523 2687 543849907 543849743 1.070000e-48 206.0
50 TraesCS5B01G356300 chr4B 87.516 769 48 25 1105 1834 129046652 129045893 0.000000e+00 845.0
51 TraesCS5B01G356300 chr4B 91.667 156 12 1 6552 6707 14888073 14887919 1.770000e-51 215.0
52 TraesCS5B01G356300 chr6B 87.051 780 51 26 1095 1834 241093589 241094358 0.000000e+00 835.0
53 TraesCS5B01G356300 chr7A 92.788 513 16 7 1013 1525 21534664 21535155 0.000000e+00 723.0
54 TraesCS5B01G356300 chr7A 93.636 220 14 0 1615 1834 21535188 21535407 6.070000e-86 329.0
55 TraesCS5B01G356300 chr7A 93.333 45 3 0 7516 7560 81863937 81863981 5.250000e-07 67.6
56 TraesCS5B01G356300 chr7D 81.947 493 55 20 1704 2181 70220698 70221171 3.550000e-103 387.0
57 TraesCS5B01G356300 chr3B 79.588 534 68 22 1708 2238 145841252 145841747 2.170000e-90 344.0
58 TraesCS5B01G356300 chr3B 87.879 165 20 0 2523 2687 145841600 145841764 2.310000e-45 195.0
59 TraesCS5B01G356300 chrUn 86.869 99 13 0 6436 6534 94825142 94825044 2.390000e-20 111.0
60 TraesCS5B01G356300 chr6A 86.869 99 13 0 6436 6534 25638672 25638574 2.390000e-20 111.0
61 TraesCS5B01G356300 chr2D 90.909 44 3 1 7503 7546 38066323 38066365 3.160000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G356300 chr5B 536044929 536053039 8110 False 14979.000000 14979 100.000000 1 8111 1 chr5B.!!$F1 8110
1 TraesCS5B01G356300 chr5B 19011161 19012102 941 False 615.500000 1020 86.628000 2913 4445 2 chr5B.!!$F2 1532
2 TraesCS5B01G356300 chr5B 536047019 536048668 1649 False 270.500000 339 86.697000 2091 3740 4 chr5B.!!$F3 1649
3 TraesCS5B01G356300 chr5D 440641398 440648809 7411 False 1351.125000 5672 88.635250 11 8111 8 chr5D.!!$F1 8100
4 TraesCS5B01G356300 chr5A 556678839 556686298 7459 False 1582.000000 3559 90.596833 572 8111 6 chr5A.!!$F3 7539
5 TraesCS5B01G356300 chr5A 134456469 134457199 730 False 905.000000 905 89.674000 6368 7072 1 chr5A.!!$F1 704
6 TraesCS5B01G356300 chr2B 219844115 219844808 693 True 942.000000 942 91.535000 1030 1710 1 chr2B.!!$R1 680
7 TraesCS5B01G356300 chr2B 684092946 684093628 682 True 850.000000 850 89.383000 1030 1710 1 chr2B.!!$R2 680
8 TraesCS5B01G356300 chr2B 761955532 761956798 1266 False 597.000000 1140 89.874000 1615 4445 3 chr2B.!!$F3 2830
9 TraesCS5B01G356300 chr4A 647885288 647887481 2193 False 496.714286 1129 90.265714 991 4445 7 chr4A.!!$F1 3454
10 TraesCS5B01G356300 chr7B 605713578 605714272 694 True 950.000000 950 91.691000 1030 1711 1 chr7B.!!$R1 681
11 TraesCS5B01G356300 chr7B 675573372 675574390 1018 False 713.500000 1101 87.508500 2833 4445 2 chr7B.!!$F2 1612
12 TraesCS5B01G356300 chr7B 688959703 688960975 1272 False 582.666667 1090 89.456000 1615 4445 3 chr7B.!!$F3 2830
13 TraesCS5B01G356300 chr1B 615797100 615798154 1054 True 994.000000 994 84.215000 1122 2181 1 chr1B.!!$R1 1059
14 TraesCS5B01G356300 chr1B 543849743 543850284 541 True 288.000000 370 84.475000 1686 2687 2 chr1B.!!$R3 1001
15 TraesCS5B01G356300 chr4B 129045893 129046652 759 True 845.000000 845 87.516000 1105 1834 1 chr4B.!!$R2 729
16 TraesCS5B01G356300 chr6B 241093589 241094358 769 False 835.000000 835 87.051000 1095 1834 1 chr6B.!!$F1 739
17 TraesCS5B01G356300 chr7A 21534664 21535407 743 False 526.000000 723 93.212000 1013 1834 2 chr7A.!!$F2 821
18 TraesCS5B01G356300 chr3B 145841252 145841764 512 False 269.500000 344 83.733500 1708 2687 2 chr3B.!!$F1 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.032952 TGCTAGGACACACCGACAAC 59.967 55.000 0.00 0.00 44.74 3.32 F
1796 2203 0.031585 TATGCGTGGATCGTGCTACC 59.968 55.000 4.43 0.00 42.13 3.18 F
1984 2391 0.101579 TGCTCAATTGCGATGCCATG 59.898 50.000 0.00 0.00 35.36 3.66 F
1985 2392 0.101759 GCTCAATTGCGATGCCATGT 59.898 50.000 0.00 0.00 0.00 3.21 F
2998 5699 0.253327 GGACGGGAGCTCCTTTGATT 59.747 55.000 31.36 10.04 35.95 2.57 F
3752 6454 0.617413 ATTAGTGACTGCTGCCAGCT 59.383 50.000 18.96 0.00 42.97 4.24 F
5404 8272 2.729360 GCAAACATTGAAAGTAACGGCC 59.271 45.455 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2381 0.316442 CGAACATGACATGGCATCGC 60.316 55.000 12.33 2.79 31.77 4.58 R
2981 5682 0.984230 TCAATCAAAGGAGCTCCCGT 59.016 50.000 29.54 15.16 40.87 5.28 R
2982 5683 2.113860 TTCAATCAAAGGAGCTCCCG 57.886 50.000 29.54 17.88 40.87 5.14 R
3916 6646 2.354203 CCTGCTGAAGGTGGTAGAACTC 60.354 54.545 0.00 0.00 41.74 3.01 R
4949 7813 2.894902 TGACGTGCAAGTTGTAACTGA 58.105 42.857 6.76 0.00 39.66 3.41 R
5728 8598 0.842030 ACCCACCTGATGCCAGAAGA 60.842 55.000 0.00 0.00 43.02 2.87 R
7201 10115 1.068333 CCCATGGAAGCAAACAGTTCG 60.068 52.381 15.22 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.002586 CTCAATTGCTAGGACACACCG 58.997 52.381 0.00 0.00 44.74 4.94
52 53 1.621317 TCAATTGCTAGGACACACCGA 59.379 47.619 0.00 0.00 44.74 4.69
56 57 0.032952 TGCTAGGACACACCGACAAC 59.967 55.000 0.00 0.00 44.74 3.32
60 61 1.593196 AGGACACACCGACAACAATG 58.407 50.000 0.00 0.00 44.74 2.82
66 67 3.119884 ACACACCGACAACAATGCATATG 60.120 43.478 0.00 2.35 0.00 1.78
74 75 6.203647 CGACAACAATGCATATGTGATTCAT 58.796 36.000 15.07 0.00 40.25 2.57
79 80 8.874816 CAACAATGCATATGTGATTCATCAAAA 58.125 29.630 0.00 0.00 38.75 2.44
91 92 9.131416 TGTGATTCATCAAAATTCATTTTCTCG 57.869 29.630 0.00 0.00 37.86 4.04
114 115 6.036953 TCGGCCAAATCATGAATTTAAATTGC 59.963 34.615 17.98 10.96 35.77 3.56
146 147 3.593442 ATGTCACAAGGTCCAAAAGGA 57.407 42.857 0.00 0.00 0.00 3.36
149 150 3.445805 TGTCACAAGGTCCAAAAGGAAAC 59.554 43.478 0.00 0.00 0.00 2.78
150 151 3.028130 TCACAAGGTCCAAAAGGAAACC 58.972 45.455 0.00 0.00 0.00 3.27
158 159 2.169561 TCCAAAAGGAAACCCAAGTTGC 59.830 45.455 0.00 0.00 35.97 4.17
167 168 0.759346 ACCCAAGTTGCGTTCTCTCT 59.241 50.000 0.00 0.00 0.00 3.10
170 171 2.064762 CCAAGTTGCGTTCTCTCTCAG 58.935 52.381 0.00 0.00 0.00 3.35
178 179 1.064803 CGTTCTCTCTCAGCGCATACT 59.935 52.381 11.47 0.00 0.00 2.12
206 207 0.792031 ACCCGTTAGCGCTTTAAACG 59.208 50.000 28.34 28.34 44.13 3.60
210 211 2.093152 CCGTTAGCGCTTTAAACGTGAT 59.907 45.455 30.87 3.23 43.27 3.06
212 213 4.145997 CGTTAGCGCTTTAAACGTGATTT 58.854 39.130 27.43 0.00 40.69 2.17
226 227 3.058777 ACGTGATTTTACACCGCGAAATT 60.059 39.130 8.23 0.00 37.48 1.82
238 239 3.687212 ACCGCGAAATTCACATGTCATAA 59.313 39.130 8.23 0.00 0.00 1.90
243 244 7.005958 CGCGAAATTCACATGTCATAAGATAG 58.994 38.462 0.00 0.00 0.00 2.08
244 245 7.293745 GCGAAATTCACATGTCATAAGATAGG 58.706 38.462 0.00 0.00 0.00 2.57
247 248 4.623932 TCACATGTCATAAGATAGGGGC 57.376 45.455 0.00 0.00 0.00 5.80
251 252 4.591498 ACATGTCATAAGATAGGGGCGTAA 59.409 41.667 0.00 0.00 0.00 3.18
318 336 3.913548 ACGCTTCATTGCATGTTGTAA 57.086 38.095 0.00 0.00 0.00 2.41
334 352 4.104420 TGTTGTAACTTTAAGGGTGGCCTA 59.896 41.667 3.32 0.00 0.00 3.93
353 371 0.104777 AGGGCATAGGCAGATCCTGA 60.105 55.000 0.15 0.00 46.98 3.86
365 383 2.702478 CAGATCCTGACTAGGGCATTGA 59.298 50.000 0.00 0.00 44.70 2.57
368 386 2.763039 TCCTGACTAGGGCATTGATGA 58.237 47.619 0.00 0.00 44.70 2.92
370 388 2.477825 CTGACTAGGGCATTGATGACG 58.522 52.381 0.00 0.00 36.40 4.35
410 428 5.969423 AGAGAATATTTGCAAACACATGGG 58.031 37.500 15.41 0.00 0.00 4.00
412 430 6.014327 AGAGAATATTTGCAAACACATGGGTT 60.014 34.615 15.41 7.75 0.00 4.11
417 435 3.147553 TGCAAACACATGGGTTAGCTA 57.852 42.857 15.06 0.00 0.00 3.32
440 458 5.670485 AGGAGCCCTTTAAAACAAGTTTTG 58.330 37.500 18.38 5.12 42.18 2.44
443 461 3.001838 GCCCTTTAAAACAAGTTTTGCGG 59.998 43.478 18.38 14.65 42.18 5.69
444 462 3.558006 CCCTTTAAAACAAGTTTTGCGGG 59.442 43.478 18.38 18.36 42.18 6.13
449 467 7.815549 CCTTTAAAACAAGTTTTGCGGGTATAT 59.184 33.333 18.38 0.00 42.18 0.86
464 482 8.514330 TGCGGGTATATTATTCTCAAGTTTTT 57.486 30.769 0.00 0.00 0.00 1.94
517 535 5.606505 TGCATATGTATGGAGCGAAAACTA 58.393 37.500 4.29 0.00 34.32 2.24
519 537 6.147656 TGCATATGTATGGAGCGAAAACTATG 59.852 38.462 4.29 0.00 34.32 2.23
520 538 6.537566 CATATGTATGGAGCGAAAACTATGC 58.462 40.000 0.00 0.00 0.00 3.14
521 539 3.202906 TGTATGGAGCGAAAACTATGCC 58.797 45.455 0.00 0.00 0.00 4.40
522 540 2.418368 ATGGAGCGAAAACTATGCCA 57.582 45.000 0.00 0.00 0.00 4.92
523 541 2.192664 TGGAGCGAAAACTATGCCAA 57.807 45.000 0.00 0.00 0.00 4.52
524 542 2.722094 TGGAGCGAAAACTATGCCAAT 58.278 42.857 0.00 0.00 0.00 3.16
526 544 2.223572 GGAGCGAAAACTATGCCAATGG 60.224 50.000 0.00 0.00 0.00 3.16
528 546 3.616219 AGCGAAAACTATGCCAATGGTA 58.384 40.909 0.00 0.00 0.00 3.25
529 547 4.207165 AGCGAAAACTATGCCAATGGTAT 58.793 39.130 8.17 8.17 0.00 2.73
530 548 4.644685 AGCGAAAACTATGCCAATGGTATT 59.355 37.500 8.43 0.00 0.00 1.89
531 549 5.825679 AGCGAAAACTATGCCAATGGTATTA 59.174 36.000 8.43 0.00 0.00 0.98
532 550 6.490040 AGCGAAAACTATGCCAATGGTATTAT 59.510 34.615 8.43 0.00 0.00 1.28
533 551 7.014230 AGCGAAAACTATGCCAATGGTATTATT 59.986 33.333 8.43 0.72 0.00 1.40
534 552 7.326063 GCGAAAACTATGCCAATGGTATTATTC 59.674 37.037 8.43 7.42 0.00 1.75
535 553 7.533900 CGAAAACTATGCCAATGGTATTATTCG 59.466 37.037 8.43 14.30 30.74 3.34
536 554 8.458573 AAAACTATGCCAATGGTATTATTCGA 57.541 30.769 8.43 0.00 0.00 3.71
537 555 8.458573 AAACTATGCCAATGGTATTATTCGAA 57.541 30.769 8.43 0.00 0.00 3.71
538 556 8.458573 AACTATGCCAATGGTATTATTCGAAA 57.541 30.769 8.43 0.00 0.00 3.46
539 557 8.458573 ACTATGCCAATGGTATTATTCGAAAA 57.541 30.769 8.43 0.00 0.00 2.29
540 558 8.908903 ACTATGCCAATGGTATTATTCGAAAAA 58.091 29.630 8.43 0.00 0.00 1.94
541 559 9.912634 CTATGCCAATGGTATTATTCGAAAAAT 57.087 29.630 8.43 0.00 0.00 1.82
543 561 9.691362 ATGCCAATGGTATTATTCGAAAAATAC 57.309 29.630 0.00 0.00 37.68 1.89
544 562 8.687242 TGCCAATGGTATTATTCGAAAAATACA 58.313 29.630 0.00 0.00 39.34 2.29
545 563 8.964150 GCCAATGGTATTATTCGAAAAATACAC 58.036 33.333 0.00 0.00 39.34 2.90
550 568 8.625651 TGGTATTATTCGAAAAATACACATGGG 58.374 33.333 0.00 0.00 39.34 4.00
551 569 8.626526 GGTATTATTCGAAAAATACACATGGGT 58.373 33.333 5.60 5.60 39.34 4.51
555 573 5.554822 TCGAAAAATACACATGGGTAAGC 57.445 39.130 12.77 0.00 0.00 3.09
556 574 5.250200 TCGAAAAATACACATGGGTAAGCT 58.750 37.500 12.77 0.00 0.00 3.74
557 575 5.123186 TCGAAAAATACACATGGGTAAGCTG 59.877 40.000 12.77 0.78 0.00 4.24
616 634 7.857885 GGTATTATTCGAAATTGAAAGAGCTGG 59.142 37.037 0.00 0.00 0.00 4.85
627 645 1.853250 AAGAGCTGGGCCTAACCACC 61.853 60.000 4.53 0.00 42.05 4.61
635 653 0.179037 GGCCTAACCACCCCGATTAC 60.179 60.000 0.00 0.00 38.86 1.89
638 656 2.435437 GCCTAACCACCCCGATTACTTA 59.565 50.000 0.00 0.00 0.00 2.24
640 658 4.638304 CCTAACCACCCCGATTACTTATG 58.362 47.826 0.00 0.00 0.00 1.90
646 669 5.184287 ACCACCCCGATTACTTATGTTTTTG 59.816 40.000 0.00 0.00 0.00 2.44
718 745 4.038080 CCCGCACCCGCAAGAAAC 62.038 66.667 0.00 0.00 43.02 2.78
769 800 4.851179 GCCGTCCCATTCCCCGAC 62.851 72.222 0.00 0.00 0.00 4.79
813 845 1.219393 CCTCCAGCCTCTTCCGTTC 59.781 63.158 0.00 0.00 0.00 3.95
814 846 1.219393 CTCCAGCCTCTTCCGTTCC 59.781 63.158 0.00 0.00 0.00 3.62
815 847 2.125512 CCAGCCTCTTCCGTTCCG 60.126 66.667 0.00 0.00 0.00 4.30
816 848 2.657237 CAGCCTCTTCCGTTCCGT 59.343 61.111 0.00 0.00 0.00 4.69
817 849 1.446272 CAGCCTCTTCCGTTCCGTC 60.446 63.158 0.00 0.00 0.00 4.79
818 850 2.125633 GCCTCTTCCGTTCCGTCC 60.126 66.667 0.00 0.00 0.00 4.79
819 851 2.577593 CCTCTTCCGTTCCGTCCC 59.422 66.667 0.00 0.00 0.00 4.46
820 852 2.181021 CTCTTCCGTTCCGTCCCG 59.819 66.667 0.00 0.00 0.00 5.14
821 853 2.598394 TCTTCCGTTCCGTCCCGT 60.598 61.111 0.00 0.00 0.00 5.28
822 854 2.126189 CTTCCGTTCCGTCCCGTC 60.126 66.667 0.00 0.00 0.00 4.79
823 855 3.637926 CTTCCGTTCCGTCCCGTCC 62.638 68.421 0.00 0.00 0.00 4.79
961 993 2.490991 GCGCGACCCCTATAAGAAAAT 58.509 47.619 12.10 0.00 0.00 1.82
987 1019 2.202932 ATCGCCTCACACGCATCC 60.203 61.111 0.00 0.00 0.00 3.51
1291 1351 1.442857 CGCAGCGAGAACGAGAAGT 60.443 57.895 9.98 0.00 42.66 3.01
1416 1492 2.892334 TTTCTGACGGTTGCGCTGC 61.892 57.895 9.73 0.25 0.00 5.25
1609 2016 1.737236 TGTGTGTCTCTGTTTGTGTGC 59.263 47.619 0.00 0.00 0.00 4.57
1610 2017 1.006086 TGTGTCTCTGTTTGTGTGCG 58.994 50.000 0.00 0.00 0.00 5.34
1611 2018 1.006832 GTGTCTCTGTTTGTGTGCGT 58.993 50.000 0.00 0.00 0.00 5.24
1612 2019 1.006086 TGTCTCTGTTTGTGTGCGTG 58.994 50.000 0.00 0.00 0.00 5.34
1613 2020 0.316196 GTCTCTGTTTGTGTGCGTGC 60.316 55.000 0.00 0.00 0.00 5.34
1614 2021 1.368019 CTCTGTTTGTGTGCGTGCG 60.368 57.895 0.00 0.00 0.00 5.34
1615 2022 2.035617 CTCTGTTTGTGTGCGTGCGT 62.036 55.000 0.00 0.00 0.00 5.24
1616 2023 1.933997 CTGTTTGTGTGCGTGCGTG 60.934 57.895 0.00 0.00 0.00 5.34
1617 2024 2.099446 GTTTGTGTGCGTGCGTGT 59.901 55.556 0.00 0.00 0.00 4.49
1618 2025 2.099254 TTTGTGTGCGTGCGTGTG 59.901 55.556 0.00 0.00 0.00 3.82
1619 2026 2.681894 TTTGTGTGCGTGCGTGTGT 61.682 52.632 0.00 0.00 0.00 3.72
1620 2027 2.840955 TTTGTGTGCGTGCGTGTGTG 62.841 55.000 0.00 0.00 0.00 3.82
1623 2030 4.943591 GTGCGTGCGTGTGTGCTG 62.944 66.667 0.00 0.00 35.36 4.41
1626 2033 4.654904 CGTGCGTGTGTGCTGCAG 62.655 66.667 10.11 10.11 39.67 4.41
1627 2034 3.271586 GTGCGTGTGTGCTGCAGA 61.272 61.111 20.43 0.00 39.67 4.26
1628 2035 2.281002 TGCGTGTGTGCTGCAGAT 60.281 55.556 20.43 0.00 34.03 2.90
1629 2036 2.319841 TGCGTGTGTGCTGCAGATC 61.320 57.895 20.43 9.80 34.03 2.75
1630 2037 2.031516 GCGTGTGTGCTGCAGATCT 61.032 57.895 20.43 0.00 0.00 2.75
1631 2038 1.964290 GCGTGTGTGCTGCAGATCTC 61.964 60.000 20.43 10.44 0.00 2.75
1632 2039 1.681025 CGTGTGTGCTGCAGATCTCG 61.681 60.000 20.43 11.99 0.00 4.04
1633 2040 0.389037 GTGTGTGCTGCAGATCTCGA 60.389 55.000 20.43 0.00 0.00 4.04
1634 2041 0.389037 TGTGTGCTGCAGATCTCGAC 60.389 55.000 20.43 4.91 0.00 4.20
1635 2042 1.153958 TGTGCTGCAGATCTCGACG 60.154 57.895 20.43 0.00 0.00 5.12
1636 2043 2.202663 TGCTGCAGATCTCGACGC 60.203 61.111 20.43 0.00 0.00 5.19
1637 2044 2.959071 GCTGCAGATCTCGACGCC 60.959 66.667 20.43 0.00 0.00 5.68
1638 2045 2.491621 CTGCAGATCTCGACGCCA 59.508 61.111 8.42 0.00 0.00 5.69
1639 2046 1.067084 CTGCAGATCTCGACGCCAT 59.933 57.895 8.42 0.00 0.00 4.40
1640 2047 1.213733 CTGCAGATCTCGACGCCATG 61.214 60.000 8.42 0.00 0.00 3.66
1641 2048 1.066422 GCAGATCTCGACGCCATGA 59.934 57.895 0.00 0.00 0.00 3.07
1642 2049 0.528466 GCAGATCTCGACGCCATGAA 60.528 55.000 0.00 0.00 0.00 2.57
1643 2050 1.485397 CAGATCTCGACGCCATGAAG 58.515 55.000 0.00 0.00 0.00 3.02
1644 2051 0.387202 AGATCTCGACGCCATGAAGG 59.613 55.000 0.00 0.00 41.84 3.46
1653 2060 2.515523 CCATGAAGGCCCTGCTCG 60.516 66.667 0.00 0.00 0.00 5.03
1654 2061 2.586245 CATGAAGGCCCTGCTCGA 59.414 61.111 0.00 0.00 0.00 4.04
1655 2062 1.817099 CATGAAGGCCCTGCTCGAC 60.817 63.158 0.00 0.00 0.00 4.20
1656 2063 2.293318 ATGAAGGCCCTGCTCGACA 61.293 57.895 0.00 0.00 0.00 4.35
1657 2064 1.841302 ATGAAGGCCCTGCTCGACAA 61.841 55.000 0.00 0.00 0.00 3.18
1658 2065 1.743252 GAAGGCCCTGCTCGACAAG 60.743 63.158 0.00 0.00 0.00 3.16
1667 2074 3.848142 CTCGACAAGCTCGTGGTG 58.152 61.111 0.00 0.00 43.45 4.17
1668 2075 2.355837 TCGACAAGCTCGTGGTGC 60.356 61.111 0.00 0.00 43.45 5.01
1669 2076 2.356313 CGACAAGCTCGTGGTGCT 60.356 61.111 0.00 0.00 43.32 4.40
1670 2077 2.375766 CGACAAGCTCGTGGTGCTC 61.376 63.158 0.00 0.00 40.22 4.26
1671 2078 1.300931 GACAAGCTCGTGGTGCTCA 60.301 57.895 0.00 0.00 40.22 4.26
1672 2079 0.880278 GACAAGCTCGTGGTGCTCAA 60.880 55.000 0.00 0.00 40.22 3.02
1673 2080 0.882042 ACAAGCTCGTGGTGCTCAAG 60.882 55.000 0.00 0.00 40.22 3.02
1674 2081 1.963338 AAGCTCGTGGTGCTCAAGC 60.963 57.895 0.00 0.00 40.22 4.01
1675 2082 2.358003 GCTCGTGGTGCTCAAGCT 60.358 61.111 3.32 0.00 42.66 3.74
1676 2083 2.386660 GCTCGTGGTGCTCAAGCTC 61.387 63.158 3.32 0.00 42.66 4.09
1677 2084 1.005748 CTCGTGGTGCTCAAGCTCA 60.006 57.895 3.32 0.00 42.66 4.26
1678 2085 0.601046 CTCGTGGTGCTCAAGCTCAA 60.601 55.000 3.32 0.00 42.66 3.02
1679 2086 0.880278 TCGTGGTGCTCAAGCTCAAC 60.880 55.000 3.32 2.70 42.66 3.18
1680 2087 1.571460 GTGGTGCTCAAGCTCAACG 59.429 57.895 3.32 0.00 42.66 4.10
1681 2088 1.597854 TGGTGCTCAAGCTCAACGG 60.598 57.895 3.32 0.00 42.66 4.44
1682 2089 1.301716 GGTGCTCAAGCTCAACGGA 60.302 57.895 3.32 0.00 42.66 4.69
1683 2090 1.294659 GGTGCTCAAGCTCAACGGAG 61.295 60.000 3.32 0.00 44.33 4.63
1684 2091 1.004560 TGCTCAAGCTCAACGGAGG 60.005 57.895 3.32 0.00 41.67 4.30
1747 2154 4.241555 CCCCGCCCATCCTCTTCG 62.242 72.222 0.00 0.00 0.00 3.79
1749 2156 4.161295 CCGCCCATCCTCTTCGCA 62.161 66.667 0.00 0.00 0.00 5.10
1750 2157 2.587194 CGCCCATCCTCTTCGCAG 60.587 66.667 0.00 0.00 0.00 5.18
1761 2168 1.880340 CTTCGCAGCTCCCGATCAC 60.880 63.158 6.81 0.00 34.35 3.06
1765 2172 1.078848 GCAGCTCCCGATCACTTGT 60.079 57.895 0.00 0.00 0.00 3.16
1781 2188 5.401550 TCACTTGTTTTAGCTTGCATATGC 58.598 37.500 21.09 21.09 42.50 3.14
1792 2199 1.205064 GCATATGCGTGGATCGTGC 59.795 57.895 12.82 0.00 42.13 5.34
1793 2200 1.224069 GCATATGCGTGGATCGTGCT 61.224 55.000 12.82 0.00 42.13 4.40
1796 2203 0.031585 TATGCGTGGATCGTGCTACC 59.968 55.000 4.43 0.00 42.13 3.18
1811 2218 3.552294 GTGCTACCTTCAGTTAGATTCGC 59.448 47.826 0.00 0.00 0.00 4.70
1819 2226 1.737793 CAGTTAGATTCGCCCCAACAC 59.262 52.381 0.00 0.00 0.00 3.32
1828 2235 0.892755 CGCCCCAACACTGTAGTCTA 59.107 55.000 0.00 0.00 0.00 2.59
1829 2236 1.135083 CGCCCCAACACTGTAGTCTAG 60.135 57.143 0.00 0.00 0.00 2.43
1838 2245 3.322254 ACACTGTAGTCTAGCAGCAAACT 59.678 43.478 0.00 0.00 36.26 2.66
1839 2246 4.523173 ACACTGTAGTCTAGCAGCAAACTA 59.477 41.667 0.00 0.00 36.26 2.24
1840 2247 4.859798 CACTGTAGTCTAGCAGCAAACTAC 59.140 45.833 18.29 18.29 42.74 2.73
1842 2249 5.060662 TGTAGTCTAGCAGCAAACTACAG 57.939 43.478 21.59 0.00 45.45 2.74
1849 2256 2.744202 AGCAGCAAACTACAGTACATGC 59.256 45.455 0.00 6.61 34.52 4.06
1854 2261 3.731867 GCAAACTACAGTACATGCCATGC 60.732 47.826 4.17 0.00 0.00 4.06
1857 2264 2.501316 ACTACAGTACATGCCATGCTGA 59.499 45.455 16.21 0.00 0.00 4.26
1859 2266 3.843893 ACAGTACATGCCATGCTGATA 57.156 42.857 16.21 0.00 0.00 2.15
1870 2277 3.461061 CCATGCTGATATCTTCGTGTGT 58.539 45.455 3.98 0.00 0.00 3.72
1871 2278 3.246936 CCATGCTGATATCTTCGTGTGTG 59.753 47.826 3.98 0.00 0.00 3.82
1873 2280 1.256376 GCTGATATCTTCGTGTGTGCG 59.744 52.381 3.98 0.00 0.00 5.34
1874 2281 2.797491 CTGATATCTTCGTGTGTGCGA 58.203 47.619 3.98 0.00 39.28 5.10
1876 2283 3.372060 TGATATCTTCGTGTGTGCGATC 58.628 45.455 3.98 0.00 40.76 3.69
1883 2290 1.499056 GTGTGTGCGATCCTGCTTG 59.501 57.895 0.00 0.00 35.36 4.01
1886 2293 2.327343 TGTGCGATCCTGCTTGTGC 61.327 57.895 0.00 0.00 40.20 4.57
1900 2307 3.053896 GTGCTGGCCACGGGTTAC 61.054 66.667 0.00 0.00 34.22 2.50
1901 2308 3.246112 TGCTGGCCACGGGTTACT 61.246 61.111 0.00 0.00 0.00 2.24
1902 2309 2.746277 GCTGGCCACGGGTTACTG 60.746 66.667 0.00 0.00 0.00 2.74
1904 2311 1.072505 CTGGCCACGGGTTACTGTT 59.927 57.895 0.00 0.00 32.69 3.16
1908 2315 0.309612 GCCACGGGTTACTGTTGTTG 59.690 55.000 0.00 0.00 32.69 3.33
1909 2316 1.670791 CCACGGGTTACTGTTGTTGT 58.329 50.000 0.00 0.00 32.69 3.32
1911 2318 2.424246 CCACGGGTTACTGTTGTTGTTT 59.576 45.455 0.00 0.00 32.69 2.83
1912 2319 3.626670 CCACGGGTTACTGTTGTTGTTTA 59.373 43.478 0.00 0.00 32.69 2.01
1913 2320 4.260866 CCACGGGTTACTGTTGTTGTTTAG 60.261 45.833 0.00 0.00 32.69 1.85
1914 2321 4.333372 CACGGGTTACTGTTGTTGTTTAGT 59.667 41.667 0.00 0.00 32.69 2.24
1915 2322 4.943093 ACGGGTTACTGTTGTTGTTTAGTT 59.057 37.500 0.00 0.00 30.06 2.24
1916 2323 5.415389 ACGGGTTACTGTTGTTGTTTAGTTT 59.585 36.000 0.00 0.00 30.06 2.66
1917 2324 6.072008 ACGGGTTACTGTTGTTGTTTAGTTTT 60.072 34.615 0.00 0.00 30.06 2.43
1919 2326 7.008538 CGGGTTACTGTTGTTGTTTAGTTTTTC 59.991 37.037 0.00 0.00 0.00 2.29
1920 2327 7.813627 GGGTTACTGTTGTTGTTTAGTTTTTCA 59.186 33.333 0.00 0.00 0.00 2.69
1921 2328 8.856247 GGTTACTGTTGTTGTTTAGTTTTTCAG 58.144 33.333 0.00 0.00 0.00 3.02
1922 2329 6.944557 ACTGTTGTTGTTTAGTTTTTCAGC 57.055 33.333 0.00 0.00 0.00 4.26
1923 2330 5.867174 ACTGTTGTTGTTTAGTTTTTCAGCC 59.133 36.000 0.00 0.00 0.00 4.85
1929 2336 1.238625 TTAGTTTTTCAGCCGGGCCG 61.239 55.000 21.46 21.46 0.00 6.13
1944 2351 1.284715 GCCGTGGTTTTAGCACACC 59.715 57.895 9.35 0.00 46.17 4.16
1945 2352 1.448922 GCCGTGGTTTTAGCACACCA 61.449 55.000 9.35 0.00 46.17 4.17
1947 2354 2.428491 CCGTGGTTTTAGCACACCATA 58.572 47.619 9.35 0.00 46.17 2.74
1957 2364 6.925610 TTTAGCACACCATATCTCACATTC 57.074 37.500 0.00 0.00 0.00 2.67
1959 2366 4.847198 AGCACACCATATCTCACATTCAA 58.153 39.130 0.00 0.00 0.00 2.69
1967 2374 7.009815 CACCATATCTCACATTCAAATGTTTGC 59.990 37.037 5.64 0.00 46.95 3.68
1969 2376 7.434307 CCATATCTCACATTCAAATGTTTGCTC 59.566 37.037 5.64 0.00 46.95 4.26
1970 2377 5.771153 TCTCACATTCAAATGTTTGCTCA 57.229 34.783 5.64 0.00 46.95 4.26
1971 2378 6.146601 TCTCACATTCAAATGTTTGCTCAA 57.853 33.333 5.64 0.00 46.95 3.02
1972 2379 6.751157 TCTCACATTCAAATGTTTGCTCAAT 58.249 32.000 5.64 0.00 46.95 2.57
1973 2380 7.211573 TCTCACATTCAAATGTTTGCTCAATT 58.788 30.769 5.64 0.00 46.95 2.32
1974 2381 7.170151 TCTCACATTCAAATGTTTGCTCAATTG 59.830 33.333 5.64 0.00 46.95 2.32
1975 2382 5.849081 CACATTCAAATGTTTGCTCAATTGC 59.151 36.000 5.64 0.00 46.95 3.56
1976 2383 4.712191 TTCAAATGTTTGCTCAATTGCG 57.288 36.364 0.00 0.00 38.05 4.85
1977 2384 3.974912 TCAAATGTTTGCTCAATTGCGA 58.025 36.364 0.00 0.00 38.05 5.10
1978 2385 4.558178 TCAAATGTTTGCTCAATTGCGAT 58.442 34.783 0.00 0.00 38.05 4.58
1979 2386 4.386350 TCAAATGTTTGCTCAATTGCGATG 59.614 37.500 0.00 0.00 38.05 3.84
1980 2387 1.700523 TGTTTGCTCAATTGCGATGC 58.299 45.000 0.00 3.35 35.36 3.91
1981 2388 0.994263 GTTTGCTCAATTGCGATGCC 59.006 50.000 0.00 0.00 35.36 4.40
1982 2389 0.602060 TTTGCTCAATTGCGATGCCA 59.398 45.000 0.00 0.00 35.36 4.92
1983 2390 0.818938 TTGCTCAATTGCGATGCCAT 59.181 45.000 0.00 0.00 35.36 4.40
1984 2391 0.101579 TGCTCAATTGCGATGCCATG 59.898 50.000 0.00 0.00 35.36 3.66
1985 2392 0.101759 GCTCAATTGCGATGCCATGT 59.898 50.000 0.00 0.00 0.00 3.21
1986 2393 1.862815 GCTCAATTGCGATGCCATGTC 60.863 52.381 0.00 0.00 0.00 3.06
1987 2394 1.402613 CTCAATTGCGATGCCATGTCA 59.597 47.619 0.00 0.00 0.00 3.58
1988 2395 2.025898 TCAATTGCGATGCCATGTCAT 58.974 42.857 0.00 0.00 0.00 3.06
1989 2396 2.124122 CAATTGCGATGCCATGTCATG 58.876 47.619 5.79 5.79 0.00 3.07
1990 2397 1.395635 ATTGCGATGCCATGTCATGT 58.604 45.000 11.84 0.00 0.00 3.21
1991 2398 1.175654 TTGCGATGCCATGTCATGTT 58.824 45.000 11.84 0.00 0.00 2.71
1992 2399 0.734309 TGCGATGCCATGTCATGTTC 59.266 50.000 11.84 4.06 0.00 3.18
1993 2400 0.316442 GCGATGCCATGTCATGTTCG 60.316 55.000 18.42 18.42 0.00 3.95
1994 2401 0.316442 CGATGCCATGTCATGTTCGC 60.316 55.000 11.84 8.55 0.00 4.70
2010 2417 1.150827 TCGCTTCTTCATGTGTGCAG 58.849 50.000 0.00 0.00 0.00 4.41
2024 2431 2.939103 GTGTGCAGTCCTGATTATGGTC 59.061 50.000 0.00 0.00 0.00 4.02
2027 2434 2.205074 GCAGTCCTGATTATGGTCGTG 58.795 52.381 0.00 0.00 0.00 4.35
2029 2436 3.448686 CAGTCCTGATTATGGTCGTGAC 58.551 50.000 0.00 0.00 0.00 3.67
2060 2467 9.581099 CACTATTGTTTGTTAGTTTTCTGGTTT 57.419 29.630 0.00 0.00 0.00 3.27
2064 2471 4.394439 TTGTTAGTTTTCTGGTTTGGCC 57.606 40.909 0.00 0.00 37.90 5.36
2072 2479 1.104577 TCTGGTTTGGCCGTGGTTTC 61.105 55.000 0.00 0.00 41.21 2.78
2073 2480 2.333581 GGTTTGGCCGTGGTTTCG 59.666 61.111 0.00 0.00 0.00 3.46
2085 2494 1.134936 GTGGTTTCGGCACACCTTTTT 60.135 47.619 0.00 0.00 33.76 1.94
2150 4841 4.225042 TCATCAGTTACTATGGGCTTGTGT 59.775 41.667 0.00 0.00 0.00 3.72
2243 4934 4.385825 ACTTATTCCAGTTCTGTTTGCGA 58.614 39.130 0.00 0.00 0.00 5.10
2244 4935 4.452455 ACTTATTCCAGTTCTGTTTGCGAG 59.548 41.667 0.00 0.00 0.00 5.03
2245 4936 2.325583 TTCCAGTTCTGTTTGCGAGT 57.674 45.000 0.00 0.00 0.00 4.18
2279 4971 2.927028 TCATGATCTGGAAGTGCATGG 58.073 47.619 0.00 0.00 42.45 3.66
2286 4978 1.402968 CTGGAAGTGCATGGCATGTAC 59.597 52.381 32.89 32.89 44.79 2.90
2502 5200 4.021544 TCATGTTGTGGTTGCCCTTATTTC 60.022 41.667 0.00 0.00 0.00 2.17
2503 5201 3.571590 TGTTGTGGTTGCCCTTATTTCT 58.428 40.909 0.00 0.00 0.00 2.52
2504 5202 3.320541 TGTTGTGGTTGCCCTTATTTCTG 59.679 43.478 0.00 0.00 0.00 3.02
2505 5203 3.237268 TGTGGTTGCCCTTATTTCTGT 57.763 42.857 0.00 0.00 0.00 3.41
2506 5204 3.571590 TGTGGTTGCCCTTATTTCTGTT 58.428 40.909 0.00 0.00 0.00 3.16
2507 5205 4.730966 TGTGGTTGCCCTTATTTCTGTTA 58.269 39.130 0.00 0.00 0.00 2.41
2508 5206 5.141182 TGTGGTTGCCCTTATTTCTGTTAA 58.859 37.500 0.00 0.00 0.00 2.01
2509 5207 5.777732 TGTGGTTGCCCTTATTTCTGTTAAT 59.222 36.000 0.00 0.00 0.00 1.40
2554 5252 2.078849 GGCAAACCCAATGCTGTAAC 57.921 50.000 0.00 0.00 43.34 2.50
2555 5253 1.337728 GGCAAACCCAATGCTGTAACC 60.338 52.381 0.00 0.00 43.34 2.85
2556 5254 1.618343 GCAAACCCAATGCTGTAACCT 59.382 47.619 0.00 0.00 40.64 3.50
2557 5255 2.037121 GCAAACCCAATGCTGTAACCTT 59.963 45.455 0.00 0.00 40.64 3.50
2558 5256 3.257127 GCAAACCCAATGCTGTAACCTTA 59.743 43.478 0.00 0.00 40.64 2.69
2559 5257 4.805219 CAAACCCAATGCTGTAACCTTAC 58.195 43.478 0.00 0.00 0.00 2.34
2702 5400 4.397417 CCTCCAAAGTTCATGATCTGGAAC 59.603 45.833 17.15 17.15 42.82 3.62
2734 5432 7.034685 ACAATATTAATACGGGCAACTTTCC 57.965 36.000 0.00 0.00 0.00 3.13
2740 5438 2.579410 ACGGGCAACTTTCCATACTT 57.421 45.000 0.00 0.00 0.00 2.24
2788 5486 6.456795 TCATGTCACCTTCTATACTCTGTG 57.543 41.667 0.00 0.00 0.00 3.66
2844 5542 6.124340 TCCAGTACTTATATGTGAACTCGGA 58.876 40.000 0.00 5.58 0.00 4.55
2959 5660 8.340618 ACGTAGTCCAGTTAAACTATCAGTTA 57.659 34.615 0.00 0.00 33.48 2.24
2962 5663 9.570488 GTAGTCCAGTTAAACTATCAGTTACAG 57.430 37.037 0.00 0.00 37.47 2.74
2980 5681 6.209391 AGTTACAGGGAGAAATGAAATTGTGG 59.791 38.462 0.00 0.00 36.10 4.17
2981 5682 4.739793 ACAGGGAGAAATGAAATTGTGGA 58.260 39.130 0.00 0.00 36.10 4.02
2982 5683 4.524328 ACAGGGAGAAATGAAATTGTGGAC 59.476 41.667 0.00 0.00 36.10 4.02
2998 5699 0.253327 GGACGGGAGCTCCTTTGATT 59.747 55.000 31.36 10.04 35.95 2.57
2999 5700 1.373570 GACGGGAGCTCCTTTGATTG 58.626 55.000 31.36 14.67 35.95 2.67
3037 5739 8.488668 TGATTAATCTGGTTCTCTGATCAATGA 58.511 33.333 16.24 0.00 33.68 2.57
3074 5776 8.829373 AAGGCTATGAATGGTCTTTATCTTTT 57.171 30.769 0.00 0.00 28.19 2.27
3752 6454 0.617413 ATTAGTGACTGCTGCCAGCT 59.383 50.000 18.96 0.00 42.97 4.24
3774 6476 4.420522 TGCACTGCTGAATATGACCATA 57.579 40.909 1.98 0.00 0.00 2.74
3802 6504 8.107095 ACTTATTTTCTATACTCTGTTGGCCAA 58.893 33.333 16.05 16.05 0.00 4.52
3809 6511 2.949447 ACTCTGTTGGCCAATGAAACT 58.051 42.857 23.66 5.91 0.00 2.66
3818 6520 5.075858 TGGCCAATGAAACTTTGATCATC 57.924 39.130 0.61 0.00 35.29 2.92
3828 6530 6.491062 TGAAACTTTGATCATCTGAACATGGT 59.509 34.615 0.00 0.00 0.00 3.55
3837 6539 3.011566 TCTGAACATGGTGTTGTGGTT 57.988 42.857 0.00 0.00 41.28 3.67
3849 6551 4.817464 GGTGTTGTGGTTGACTATGTACAA 59.183 41.667 0.00 0.00 0.00 2.41
3880 6598 8.711457 TGATATCAGTATATGTTTGATGCAACG 58.289 33.333 0.00 0.00 33.81 4.10
3883 6601 5.641636 TCAGTATATGTTTGATGCAACGTGT 59.358 36.000 0.00 0.00 0.00 4.49
3889 6607 5.175090 TGTTTGATGCAACGTGTCAATAA 57.825 34.783 0.76 0.00 32.48 1.40
3894 6612 3.822594 TGCAACGTGTCAATAATGGAC 57.177 42.857 0.00 0.00 35.83 4.02
3896 6614 3.188254 TGCAACGTGTCAATAATGGACAG 59.812 43.478 0.00 0.00 45.21 3.51
3900 6618 6.017934 GCAACGTGTCAATAATGGACAGATAT 60.018 38.462 0.00 0.00 45.21 1.63
3902 6620 6.816136 ACGTGTCAATAATGGACAGATATGA 58.184 36.000 0.00 0.00 45.21 2.15
4221 6952 5.103686 TCCCACTTCCCCTATTTATTTCCTG 60.104 44.000 0.00 0.00 0.00 3.86
4835 7633 7.520614 GCATACTACACCTTATCCAGATTTTGC 60.521 40.741 0.00 0.00 0.00 3.68
4932 7794 8.839310 AATCTATGTGGTGTATGCTTCTTATC 57.161 34.615 0.00 0.00 0.00 1.75
4966 7830 4.843147 TCAAATCAGTTACAACTTGCACG 58.157 39.130 0.00 0.00 37.08 5.34
4983 7847 2.881074 CACGTCATCTGTAGGGACTTG 58.119 52.381 0.00 0.00 41.75 3.16
5400 8268 7.594758 TGCTGATAAGCAAACATTGAAAGTAAC 59.405 33.333 0.83 0.00 42.40 2.50
5404 8272 2.729360 GCAAACATTGAAAGTAACGGCC 59.271 45.455 0.00 0.00 0.00 6.13
5555 8423 2.874701 CTCCCTGAACTGTGTTGTTCTG 59.125 50.000 8.52 7.78 44.63 3.02
5560 8428 3.186909 TGAACTGTGTTGTTCTGAGTCG 58.813 45.455 8.52 0.00 44.63 4.18
5675 8543 8.331730 AGATATTTAACACCAACAACCTGTAC 57.668 34.615 0.00 0.00 0.00 2.90
5681 8549 3.181458 ACACCAACAACCTGTACGAATCT 60.181 43.478 0.00 0.00 0.00 2.40
5682 8550 4.039488 ACACCAACAACCTGTACGAATCTA 59.961 41.667 0.00 0.00 0.00 1.98
5686 8554 7.332430 CACCAACAACCTGTACGAATCTATAAA 59.668 37.037 0.00 0.00 0.00 1.40
5689 8557 6.038356 ACAACCTGTACGAATCTATAAACCG 58.962 40.000 0.00 0.00 0.00 4.44
5696 8564 7.984391 TGTACGAATCTATAAACCGTGTCTTA 58.016 34.615 0.00 0.00 35.05 2.10
5728 8598 6.441088 AAGAACTCTGTTCCTTCCTAACAT 57.559 37.500 6.80 0.00 36.33 2.71
6003 8874 0.180171 GGGCTGCCCACTTTTTGTTT 59.820 50.000 32.46 0.00 44.65 2.83
6048 8919 8.894768 TTCTTTCCTTCTAGTTCTTTGAGAAG 57.105 34.615 4.27 4.27 43.83 2.85
6069 8940 1.086696 CAATCGGCATCAACGTTCCT 58.913 50.000 0.00 0.00 0.00 3.36
6193 9064 2.555757 ACAGCTGACCTCATTTTTCTGC 59.444 45.455 23.35 0.00 35.18 4.26
6321 9192 8.697507 AAAGGTAAGCCATCTTAATCATAAGG 57.302 34.615 0.00 0.00 37.20 2.69
6345 9216 9.449719 AGGATTTTGTCAATTAGTCGATAAAGT 57.550 29.630 0.00 0.00 0.00 2.66
6402 9273 3.146066 GCTGGAATGTGGTTGTGACTTA 58.854 45.455 0.00 0.00 0.00 2.24
6468 9343 0.911769 TCAAGTCGATCCCCAGCATT 59.088 50.000 0.00 0.00 0.00 3.56
6498 9373 0.036022 ACAGCTTGAAGGTCTCTGGC 59.964 55.000 0.00 0.00 0.00 4.85
6565 9446 4.660168 AGTCATCATTCTCCTTTTGCTGT 58.340 39.130 0.00 0.00 0.00 4.40
6567 9448 4.456911 GTCATCATTCTCCTTTTGCTGTGA 59.543 41.667 0.00 0.00 0.00 3.58
6797 9706 2.438434 CAGGACATCAACGGCCCC 60.438 66.667 0.00 0.00 0.00 5.80
6818 9727 1.205893 GAGGATCTTTGAGTGACGCCT 59.794 52.381 0.00 0.00 0.00 5.52
6821 9730 0.322975 ATCTTTGAGTGACGCCTGCT 59.677 50.000 0.00 0.00 0.00 4.24
6853 9763 0.250770 GCGTTCCCAGAAACCTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
6875 9785 2.029290 GTCCTCCTTCGCTGAGTTAACA 60.029 50.000 8.61 0.00 0.00 2.41
6879 9789 2.626266 TCCTTCGCTGAGTTAACAGTCA 59.374 45.455 8.61 2.90 39.73 3.41
7098 10011 2.360165 AGAGTTGCTTTTTGCTGGAGTG 59.640 45.455 0.00 0.00 43.37 3.51
7134 10047 0.109781 CCAGTTGTGCCATGCGTAAC 60.110 55.000 0.00 0.00 0.00 2.50
7195 10109 4.562789 CGTCTATTGACAATCTTTCTCGCA 59.437 41.667 3.36 0.00 43.06 5.10
7201 10115 2.416893 GACAATCTTTCTCGCAGAACCC 59.583 50.000 0.00 0.00 33.26 4.11
7205 10119 0.790814 CTTTCTCGCAGAACCCGAAC 59.209 55.000 0.00 0.00 33.26 3.95
7220 10134 1.068333 CCGAACTGTTTGCTTCCATGG 60.068 52.381 4.97 4.97 0.00 3.66
7221 10135 1.068333 CGAACTGTTTGCTTCCATGGG 60.068 52.381 13.02 0.00 0.00 4.00
7226 10140 1.912763 TTTGCTTCCATGGGCCCAC 60.913 57.895 31.51 14.57 0.00 4.61
7231 10145 2.141011 CTTCCATGGGCCCACTGTGA 62.141 60.000 31.51 18.38 0.00 3.58
7232 10146 2.044650 CCATGGGCCCACTGTGAG 60.045 66.667 31.51 12.04 0.00 3.51
7238 10163 0.961753 GGGCCCACTGTGAGAAAAAG 59.038 55.000 19.95 0.00 0.00 2.27
7242 10167 2.033424 GCCCACTGTGAGAAAAAGTCAC 59.967 50.000 9.86 0.00 43.97 3.67
7286 10279 1.372087 GAAGGGATCGTGCTTGGCAG 61.372 60.000 0.00 0.00 40.08 4.85
7287 10280 2.045926 GGGATCGTGCTTGGCAGT 60.046 61.111 0.00 0.00 40.08 4.40
7294 10287 0.100325 CGTGCTTGGCAGTTTTGTCA 59.900 50.000 0.00 0.00 40.08 3.58
7306 10299 5.464168 GCAGTTTTGTCATGTGCTTATTCT 58.536 37.500 0.00 0.00 0.00 2.40
7314 10307 5.095490 GTCATGTGCTTATTCTTTTTCCCG 58.905 41.667 0.00 0.00 0.00 5.14
7375 10483 3.229293 TCATGGTGGCAAAAGAACATGA 58.771 40.909 0.00 0.00 41.45 3.07
7388 10496 6.770746 AAAGAACATGAGCATGAATAAGCT 57.229 33.333 16.70 0.00 45.25 3.74
7419 10527 2.373224 TCCAACACTTGCATTGTGTGA 58.627 42.857 21.43 14.56 46.46 3.58
7428 10536 6.207221 ACACTTGCATTGTGTGAAGATATCAA 59.793 34.615 20.47 0.00 45.57 2.57
7429 10537 7.094075 ACACTTGCATTGTGTGAAGATATCAAT 60.094 33.333 20.47 0.00 45.57 2.57
7430 10538 7.431376 CACTTGCATTGTGTGAAGATATCAATC 59.569 37.037 5.32 3.66 40.50 2.67
7431 10539 7.121611 ACTTGCATTGTGTGAAGATATCAATCA 59.878 33.333 5.32 6.33 40.50 2.57
7515 10628 8.926710 CATGTGTCTACAGTCCTTAGTAAAAAG 58.073 37.037 0.00 0.00 40.79 2.27
7516 10629 8.015185 TGTGTCTACAGTCCTTAGTAAAAAGT 57.985 34.615 0.00 0.00 31.91 2.66
7517 10630 9.135189 TGTGTCTACAGTCCTTAGTAAAAAGTA 57.865 33.333 0.00 0.00 31.91 2.24
7518 10631 9.404348 GTGTCTACAGTCCTTAGTAAAAAGTAC 57.596 37.037 0.00 0.00 0.00 2.73
7519 10632 9.359653 TGTCTACAGTCCTTAGTAAAAAGTACT 57.640 33.333 0.00 0.00 0.00 2.73
7520 10633 9.838975 GTCTACAGTCCTTAGTAAAAAGTACTC 57.161 37.037 0.00 0.00 0.00 2.59
7521 10634 9.018582 TCTACAGTCCTTAGTAAAAAGTACTCC 57.981 37.037 0.00 0.00 0.00 3.85
7522 10635 7.002250 ACAGTCCTTAGTAAAAAGTACTCCC 57.998 40.000 0.00 0.00 0.00 4.30
7523 10636 6.098017 CAGTCCTTAGTAAAAAGTACTCCCG 58.902 44.000 0.00 0.00 0.00 5.14
7524 10637 4.867047 GTCCTTAGTAAAAAGTACTCCCGC 59.133 45.833 0.00 0.00 0.00 6.13
7525 10638 4.081476 TCCTTAGTAAAAAGTACTCCCGCC 60.081 45.833 0.00 0.00 0.00 6.13
7526 10639 4.322953 CCTTAGTAAAAAGTACTCCCGCCA 60.323 45.833 0.00 0.00 0.00 5.69
7527 10640 3.994931 AGTAAAAAGTACTCCCGCCAT 57.005 42.857 0.00 0.00 0.00 4.40
7528 10641 6.407299 CCTTAGTAAAAAGTACTCCCGCCATA 60.407 42.308 0.00 0.00 0.00 2.74
7529 10642 5.425196 AGTAAAAAGTACTCCCGCCATAA 57.575 39.130 0.00 0.00 0.00 1.90
7530 10643 5.807909 AGTAAAAAGTACTCCCGCCATAAA 58.192 37.500 0.00 0.00 0.00 1.40
7531 10644 5.878669 AGTAAAAAGTACTCCCGCCATAAAG 59.121 40.000 0.00 0.00 0.00 1.85
7532 10645 4.563140 AAAAGTACTCCCGCCATAAAGA 57.437 40.909 0.00 0.00 0.00 2.52
7533 10646 4.563140 AAAGTACTCCCGCCATAAAGAA 57.437 40.909 0.00 0.00 0.00 2.52
7534 10647 4.563140 AAGTACTCCCGCCATAAAGAAA 57.437 40.909 0.00 0.00 0.00 2.52
7535 10648 4.772886 AGTACTCCCGCCATAAAGAAAT 57.227 40.909 0.00 0.00 0.00 2.17
7536 10649 5.881923 AGTACTCCCGCCATAAAGAAATA 57.118 39.130 0.00 0.00 0.00 1.40
7537 10650 6.435292 AGTACTCCCGCCATAAAGAAATAT 57.565 37.500 0.00 0.00 0.00 1.28
7538 10651 7.549147 AGTACTCCCGCCATAAAGAAATATA 57.451 36.000 0.00 0.00 0.00 0.86
7539 10652 7.970102 AGTACTCCCGCCATAAAGAAATATAA 58.030 34.615 0.00 0.00 0.00 0.98
7540 10653 8.095169 AGTACTCCCGCCATAAAGAAATATAAG 58.905 37.037 0.00 0.00 0.00 1.73
7541 10654 7.074653 ACTCCCGCCATAAAGAAATATAAGA 57.925 36.000 0.00 0.00 0.00 2.10
7542 10655 7.162082 ACTCCCGCCATAAAGAAATATAAGAG 58.838 38.462 0.00 0.00 0.00 2.85
7543 10656 5.938125 TCCCGCCATAAAGAAATATAAGAGC 59.062 40.000 0.00 0.00 0.00 4.09
7544 10657 5.163854 CCCGCCATAAAGAAATATAAGAGCG 60.164 44.000 0.00 0.00 38.48 5.03
7545 10658 5.408604 CCGCCATAAAGAAATATAAGAGCGT 59.591 40.000 0.00 0.00 37.15 5.07
7546 10659 6.299604 CGCCATAAAGAAATATAAGAGCGTG 58.700 40.000 0.00 0.00 34.42 5.34
7547 10660 6.145534 CGCCATAAAGAAATATAAGAGCGTGA 59.854 38.462 0.00 0.00 34.42 4.35
7548 10661 7.513968 GCCATAAAGAAATATAAGAGCGTGAG 58.486 38.462 0.00 0.00 0.00 3.51
7549 10662 7.360438 GCCATAAAGAAATATAAGAGCGTGAGG 60.360 40.741 0.00 0.00 0.00 3.86
7550 10663 7.118390 CCATAAAGAAATATAAGAGCGTGAGGG 59.882 40.741 0.00 0.00 0.00 4.30
7582 10695 9.563748 AAATCCAAATTTGAAACACAGATGATT 57.436 25.926 19.86 11.74 33.78 2.57
7584 10697 8.961294 TCCAAATTTGAAACACAGATGATTTT 57.039 26.923 19.86 0.00 0.00 1.82
7721 11286 6.485313 CCCACACATTGTAACTGAAGAGTTTA 59.515 38.462 0.00 0.00 39.56 2.01
7838 11403 4.122046 TGCACCATCTATTGAATCACTCG 58.878 43.478 0.00 0.00 0.00 4.18
7911 11476 5.920273 AGAAACACAAGCATTTACAATTCCG 59.080 36.000 0.00 0.00 0.00 4.30
8001 11566 1.015109 GACCAGCTCTATCGACGACA 58.985 55.000 0.00 0.00 0.00 4.35
8026 11591 1.089920 GATTGCTGTGCCGATGTCTT 58.910 50.000 0.00 0.00 0.00 3.01
8028 11593 0.250252 TTGCTGTGCCGATGTCTTGA 60.250 50.000 0.00 0.00 0.00 3.02
8077 11642 0.609957 ATGTACCACGACGGGTCTCA 60.610 55.000 10.72 11.50 42.42 3.27
8094 11659 2.376518 TCTCAAACCTTCCCAAGCTCAT 59.623 45.455 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.332819 GTGTCCTAGCAATTGAGCGTATTT 59.667 41.667 10.34 0.00 40.15 1.40
27 28 2.232696 TGTGTCCTAGCAATTGAGCGTA 59.767 45.455 10.34 0.00 40.15 4.42
29 30 1.394917 GTGTGTCCTAGCAATTGAGCG 59.605 52.381 10.34 0.00 40.15 5.03
37 38 0.032952 GTTGTCGGTGTGTCCTAGCA 59.967 55.000 0.00 0.00 0.00 3.49
39 40 2.519377 TTGTTGTCGGTGTGTCCTAG 57.481 50.000 0.00 0.00 0.00 3.02
40 41 2.761559 CATTGTTGTCGGTGTGTCCTA 58.238 47.619 0.00 0.00 0.00 2.94
51 52 7.197703 TGATGAATCACATATGCATTGTTGTC 58.802 34.615 3.54 6.88 39.56 3.18
52 53 7.102847 TGATGAATCACATATGCATTGTTGT 57.897 32.000 3.54 4.06 39.56 3.32
66 67 8.589629 CCGAGAAAATGAATTTTGATGAATCAC 58.410 33.333 5.76 0.00 39.86 3.06
74 75 4.862902 TGGCCGAGAAAATGAATTTTGA 57.137 36.364 5.76 0.00 39.86 2.69
79 80 5.127519 TCATGATTTGGCCGAGAAAATGAAT 59.872 36.000 3.63 0.00 0.00 2.57
91 92 6.095160 TGGCAATTTAAATTCATGATTTGGCC 59.905 34.615 18.90 18.90 38.40 5.36
114 115 5.674525 ACCTTGTGACATATGTGTATCTGG 58.325 41.667 14.43 10.38 39.09 3.86
122 123 4.766891 CCTTTTGGACCTTGTGACATATGT 59.233 41.667 8.43 8.43 44.07 2.29
149 150 1.270305 TGAGAGAGAACGCAACTTGGG 60.270 52.381 4.34 4.34 36.28 4.12
150 151 2.064762 CTGAGAGAGAACGCAACTTGG 58.935 52.381 0.00 0.00 0.00 3.61
158 159 1.064803 AGTATGCGCTGAGAGAGAACG 59.935 52.381 9.73 0.00 0.00 3.95
167 168 2.177394 TTCAACCAAGTATGCGCTGA 57.823 45.000 9.73 0.00 0.00 4.26
193 194 6.072733 GTGTAAAATCACGTTTAAAGCGCTA 58.927 36.000 12.05 0.00 0.00 4.26
196 197 4.316254 CGGTGTAAAATCACGTTTAAAGCG 59.684 41.667 5.42 5.42 42.44 4.68
206 207 4.319901 GTGAATTTCGCGGTGTAAAATCAC 59.680 41.667 17.79 17.79 37.96 3.06
210 211 3.965292 TGTGAATTTCGCGGTGTAAAA 57.035 38.095 6.13 0.00 0.00 1.52
212 213 2.809119 ACATGTGAATTTCGCGGTGTAA 59.191 40.909 6.13 0.00 30.31 2.41
226 227 3.006859 CGCCCCTATCTTATGACATGTGA 59.993 47.826 1.15 0.00 0.00 3.58
238 239 1.759459 GCCTGCTTACGCCCCTATCT 61.759 60.000 0.00 0.00 34.43 1.98
244 245 4.715523 TGGTGCCTGCTTACGCCC 62.716 66.667 0.00 0.00 35.51 6.13
247 248 0.238289 CAGTTTGGTGCCTGCTTACG 59.762 55.000 0.00 0.00 0.00 3.18
274 275 3.211963 GCTACGCCCCAAGCCATG 61.212 66.667 0.00 0.00 38.78 3.66
275 276 4.856801 CGCTACGCCCCAAGCCAT 62.857 66.667 0.00 0.00 38.78 4.40
305 308 6.454795 CACCCTTAAAGTTACAACATGCAAT 58.545 36.000 0.00 0.00 0.00 3.56
318 336 1.296002 CCCTAGGCCACCCTTAAAGT 58.704 55.000 5.01 0.00 42.87 2.66
353 371 1.202417 CGTCGTCATCAATGCCCTAGT 60.202 52.381 0.00 0.00 0.00 2.57
357 375 2.823829 GCCGTCGTCATCAATGCCC 61.824 63.158 0.00 0.00 0.00 5.36
358 376 1.369091 AAGCCGTCGTCATCAATGCC 61.369 55.000 0.00 0.00 0.00 4.40
365 383 0.806868 TCGAGTTAAGCCGTCGTCAT 59.193 50.000 0.00 0.00 35.22 3.06
368 386 1.154338 CGTCGAGTTAAGCCGTCGT 60.154 57.895 0.00 0.00 35.22 4.34
370 388 0.445436 TCTCGTCGAGTTAAGCCGTC 59.555 55.000 21.15 0.00 0.00 4.79
398 416 2.423538 CCTAGCTAACCCATGTGTTTGC 59.576 50.000 16.97 16.97 44.00 3.68
410 428 5.250982 TGTTTTAAAGGGCTCCTAGCTAAC 58.749 41.667 0.00 0.00 41.99 2.34
412 430 5.013808 ACTTGTTTTAAAGGGCTCCTAGCTA 59.986 40.000 0.00 0.00 41.99 3.32
417 435 5.670485 CAAAACTTGTTTTAAAGGGCTCCT 58.330 37.500 10.60 0.00 33.87 3.69
517 535 9.691362 GTATTTTTCGAATAATACCATTGGCAT 57.309 29.630 27.50 0.00 33.26 4.40
519 537 8.964150 GTGTATTTTTCGAATAATACCATTGGC 58.036 33.333 31.18 18.48 36.73 4.52
524 542 8.625651 CCCATGTGTATTTTTCGAATAATACCA 58.374 33.333 31.18 28.13 36.73 3.25
529 547 8.185505 GCTTACCCATGTGTATTTTTCGAATAA 58.814 33.333 0.00 0.01 0.00 1.40
530 548 7.554835 AGCTTACCCATGTGTATTTTTCGAATA 59.445 33.333 0.00 0.00 0.00 1.75
531 549 6.377146 AGCTTACCCATGTGTATTTTTCGAAT 59.623 34.615 0.00 0.00 0.00 3.34
532 550 5.708230 AGCTTACCCATGTGTATTTTTCGAA 59.292 36.000 0.00 0.00 0.00 3.71
533 551 5.123186 CAGCTTACCCATGTGTATTTTTCGA 59.877 40.000 0.00 0.00 0.00 3.71
534 552 5.331902 CAGCTTACCCATGTGTATTTTTCG 58.668 41.667 0.00 0.00 0.00 3.46
535 553 5.394115 CCCAGCTTACCCATGTGTATTTTTC 60.394 44.000 0.00 0.00 0.00 2.29
536 554 4.466015 CCCAGCTTACCCATGTGTATTTTT 59.534 41.667 0.00 0.00 0.00 1.94
537 555 4.023291 CCCAGCTTACCCATGTGTATTTT 58.977 43.478 0.00 0.00 0.00 1.82
538 556 3.011257 ACCCAGCTTACCCATGTGTATTT 59.989 43.478 0.00 0.00 0.00 1.40
539 557 2.580783 ACCCAGCTTACCCATGTGTATT 59.419 45.455 0.00 0.00 0.00 1.89
540 558 2.205342 ACCCAGCTTACCCATGTGTAT 58.795 47.619 0.00 0.00 0.00 2.29
541 559 1.663911 ACCCAGCTTACCCATGTGTA 58.336 50.000 0.00 0.00 0.00 2.90
542 560 0.777446 AACCCAGCTTACCCATGTGT 59.223 50.000 0.00 0.00 0.00 3.72
543 561 1.176527 CAACCCAGCTTACCCATGTG 58.823 55.000 0.00 0.00 0.00 3.21
544 562 0.777446 ACAACCCAGCTTACCCATGT 59.223 50.000 0.00 0.00 0.00 3.21
545 563 1.923356 AACAACCCAGCTTACCCATG 58.077 50.000 0.00 0.00 0.00 3.66
546 564 2.694616 AAACAACCCAGCTTACCCAT 57.305 45.000 0.00 0.00 0.00 4.00
547 565 2.463047 AAAACAACCCAGCTTACCCA 57.537 45.000 0.00 0.00 0.00 4.51
548 566 2.696187 TGAAAAACAACCCAGCTTACCC 59.304 45.455 0.00 0.00 0.00 3.69
549 567 4.394439 TTGAAAAACAACCCAGCTTACC 57.606 40.909 0.00 0.00 33.18 2.85
550 568 5.872617 ACTTTTGAAAAACAACCCAGCTTAC 59.127 36.000 0.00 0.00 38.29 2.34
551 569 6.043854 ACTTTTGAAAAACAACCCAGCTTA 57.956 33.333 0.00 0.00 38.29 3.09
552 570 4.905429 ACTTTTGAAAAACAACCCAGCTT 58.095 34.783 0.00 0.00 38.29 3.74
553 571 4.551702 ACTTTTGAAAAACAACCCAGCT 57.448 36.364 0.00 0.00 38.29 4.24
554 572 6.238347 CCATAACTTTTGAAAAACAACCCAGC 60.238 38.462 0.00 0.00 38.29 4.85
555 573 6.238347 GCCATAACTTTTGAAAAACAACCCAG 60.238 38.462 0.00 0.00 38.29 4.45
556 574 5.586643 GCCATAACTTTTGAAAAACAACCCA 59.413 36.000 0.00 0.00 38.29 4.51
557 575 5.277106 CGCCATAACTTTTGAAAAACAACCC 60.277 40.000 0.00 0.00 38.29 4.11
616 634 0.179037 GTAATCGGGGTGGTTAGGCC 60.179 60.000 0.00 0.00 37.90 5.19
627 645 6.995511 TCCTCAAAAACATAAGTAATCGGG 57.004 37.500 0.00 0.00 0.00 5.14
678 701 1.363744 GCGTGCTCTCATTACTGCTT 58.636 50.000 0.00 0.00 0.00 3.91
1291 1351 2.721167 CGAGGCTGATGAACCCGGA 61.721 63.158 0.73 0.00 0.00 5.14
1416 1492 3.705638 CGCTGCAGACACACCACG 61.706 66.667 20.43 4.64 0.00 4.94
1609 2016 4.654904 CTGCAGCACACACGCACG 62.655 66.667 0.00 0.00 0.00 5.34
1610 2017 2.504461 GATCTGCAGCACACACGCAC 62.504 60.000 9.47 0.00 0.00 5.34
1611 2018 2.281002 ATCTGCAGCACACACGCA 60.281 55.556 9.47 0.00 0.00 5.24
1612 2019 1.964290 GAGATCTGCAGCACACACGC 61.964 60.000 9.47 0.00 0.00 5.34
1613 2020 1.681025 CGAGATCTGCAGCACACACG 61.681 60.000 9.47 6.18 0.00 4.49
1614 2021 0.389037 TCGAGATCTGCAGCACACAC 60.389 55.000 9.47 0.00 0.00 3.82
1615 2022 0.389037 GTCGAGATCTGCAGCACACA 60.389 55.000 9.47 0.00 0.00 3.72
1616 2023 1.409227 CGTCGAGATCTGCAGCACAC 61.409 60.000 9.47 3.22 0.00 3.82
1617 2024 1.153958 CGTCGAGATCTGCAGCACA 60.154 57.895 9.47 0.00 0.00 4.57
1618 2025 2.512301 GCGTCGAGATCTGCAGCAC 61.512 63.158 9.47 5.31 0.00 4.40
1619 2026 2.202663 GCGTCGAGATCTGCAGCA 60.203 61.111 9.47 0.00 0.00 4.41
1620 2027 2.959071 GGCGTCGAGATCTGCAGC 60.959 66.667 9.47 0.00 0.00 5.25
1621 2028 1.067084 ATGGCGTCGAGATCTGCAG 59.933 57.895 7.63 7.63 0.00 4.41
1622 2029 1.227060 CATGGCGTCGAGATCTGCA 60.227 57.895 0.00 0.00 0.00 4.41
1623 2030 0.528466 TTCATGGCGTCGAGATCTGC 60.528 55.000 0.00 0.00 0.00 4.26
1624 2031 1.485397 CTTCATGGCGTCGAGATCTG 58.515 55.000 0.00 0.00 0.00 2.90
1625 2032 0.387202 CCTTCATGGCGTCGAGATCT 59.613 55.000 0.00 0.00 0.00 2.75
1626 2033 2.892305 CCTTCATGGCGTCGAGATC 58.108 57.895 0.00 0.00 0.00 2.75
1636 2043 2.515523 CGAGCAGGGCCTTCATGG 60.516 66.667 1.32 0.00 39.35 3.66
1637 2044 1.817099 GTCGAGCAGGGCCTTCATG 60.817 63.158 1.32 0.00 0.00 3.07
1638 2045 1.841302 TTGTCGAGCAGGGCCTTCAT 61.841 55.000 1.32 0.00 0.00 2.57
1639 2046 2.454832 CTTGTCGAGCAGGGCCTTCA 62.455 60.000 1.32 0.00 0.00 3.02
1640 2047 1.743252 CTTGTCGAGCAGGGCCTTC 60.743 63.158 1.32 0.00 0.00 3.46
1641 2048 2.348998 CTTGTCGAGCAGGGCCTT 59.651 61.111 1.32 0.00 0.00 4.35
1653 2060 0.880278 TTGAGCACCACGAGCTTGTC 60.880 55.000 2.72 0.00 43.58 3.18
1654 2061 0.882042 CTTGAGCACCACGAGCTTGT 60.882 55.000 0.00 0.00 43.58 3.16
1655 2062 1.864862 CTTGAGCACCACGAGCTTG 59.135 57.895 0.00 0.00 43.58 4.01
1656 2063 1.963338 GCTTGAGCACCACGAGCTT 60.963 57.895 0.00 0.00 43.58 3.74
1657 2064 2.358003 GCTTGAGCACCACGAGCT 60.358 61.111 0.00 0.00 46.82 4.09
1658 2065 2.358003 AGCTTGAGCACCACGAGC 60.358 61.111 5.70 0.00 45.16 5.03
1659 2066 0.601046 TTGAGCTTGAGCACCACGAG 60.601 55.000 5.70 0.00 45.16 4.18
1660 2067 0.880278 GTTGAGCTTGAGCACCACGA 60.880 55.000 5.70 0.00 45.16 4.35
1661 2068 1.571460 GTTGAGCTTGAGCACCACG 59.429 57.895 5.70 0.00 45.16 4.94
1662 2069 1.571460 CGTTGAGCTTGAGCACCAC 59.429 57.895 5.70 0.47 45.16 4.16
1663 2070 1.597854 CCGTTGAGCTTGAGCACCA 60.598 57.895 5.70 0.17 45.16 4.17
1664 2071 1.294659 CTCCGTTGAGCTTGAGCACC 61.295 60.000 5.70 0.00 45.16 5.01
1665 2072 1.294659 CCTCCGTTGAGCTTGAGCAC 61.295 60.000 5.70 0.00 45.16 4.40
1666 2073 1.004560 CCTCCGTTGAGCTTGAGCA 60.005 57.895 5.70 0.00 45.16 4.26
1667 2074 2.394563 GCCTCCGTTGAGCTTGAGC 61.395 63.158 0.00 0.00 37.29 4.26
1668 2075 1.743252 GGCCTCCGTTGAGCTTGAG 60.743 63.158 0.00 0.00 37.29 3.02
1669 2076 2.172483 GAGGCCTCCGTTGAGCTTGA 62.172 60.000 23.19 0.00 37.29 3.02
1670 2077 1.743252 GAGGCCTCCGTTGAGCTTG 60.743 63.158 23.19 0.00 37.29 4.01
1671 2078 2.665603 GAGGCCTCCGTTGAGCTT 59.334 61.111 23.19 0.00 37.29 3.74
1672 2079 3.764466 CGAGGCCTCCGTTGAGCT 61.764 66.667 27.20 0.00 37.29 4.09
1673 2080 4.821589 CCGAGGCCTCCGTTGAGC 62.822 72.222 27.20 0.00 37.29 4.26
1674 2081 4.821589 GCCGAGGCCTCCGTTGAG 62.822 72.222 27.20 11.54 38.42 3.02
1734 2141 2.899339 GCTGCGAAGAGGATGGGC 60.899 66.667 0.00 0.00 0.00 5.36
1738 2145 2.790791 CGGGAGCTGCGAAGAGGAT 61.791 63.158 0.00 0.00 0.00 3.24
1739 2146 3.452786 CGGGAGCTGCGAAGAGGA 61.453 66.667 0.00 0.00 0.00 3.71
1747 2154 0.674895 AACAAGTGATCGGGAGCTGC 60.675 55.000 0.00 0.00 0.00 5.25
1749 2156 2.568623 AAAACAAGTGATCGGGAGCT 57.431 45.000 0.00 0.00 0.00 4.09
1750 2157 2.096013 GCTAAAACAAGTGATCGGGAGC 59.904 50.000 0.00 0.00 0.00 4.70
1761 2168 4.263677 CACGCATATGCAAGCTAAAACAAG 59.736 41.667 26.52 8.46 42.21 3.16
1765 2172 3.013219 TCCACGCATATGCAAGCTAAAA 58.987 40.909 26.52 1.49 42.21 1.52
1792 2199 3.492829 GGGGCGAATCTAACTGAAGGTAG 60.493 52.174 0.00 0.00 0.00 3.18
1793 2200 2.433239 GGGGCGAATCTAACTGAAGGTA 59.567 50.000 0.00 0.00 0.00 3.08
1796 2203 2.678336 GTTGGGGCGAATCTAACTGAAG 59.322 50.000 0.00 0.00 0.00 3.02
1811 2218 1.899814 TGCTAGACTACAGTGTTGGGG 59.100 52.381 0.00 0.00 0.00 4.96
1819 2226 5.060662 TGTAGTTTGCTGCTAGACTACAG 57.939 43.478 25.06 3.86 45.52 2.74
1828 2235 2.744202 GCATGTACTGTAGTTTGCTGCT 59.256 45.455 0.00 0.00 0.00 4.24
1829 2236 2.159517 GGCATGTACTGTAGTTTGCTGC 60.160 50.000 13.12 0.00 31.92 5.25
1838 2245 3.843893 ATCAGCATGGCATGTACTGTA 57.156 42.857 26.94 15.89 36.16 2.74
1839 2246 2.723322 ATCAGCATGGCATGTACTGT 57.277 45.000 26.94 14.15 36.16 3.55
1840 2247 4.576879 AGATATCAGCATGGCATGTACTG 58.423 43.478 26.94 24.11 36.16 2.74
1841 2248 4.904895 AGATATCAGCATGGCATGTACT 57.095 40.909 26.94 14.69 36.16 2.73
1842 2249 4.092529 CGAAGATATCAGCATGGCATGTAC 59.907 45.833 26.94 12.63 36.16 2.90
1849 2256 3.246936 CACACACGAAGATATCAGCATGG 59.753 47.826 5.32 0.00 36.16 3.66
1854 2261 2.797491 TCGCACACACGAAGATATCAG 58.203 47.619 5.32 0.00 39.54 2.90
1857 2264 2.362397 AGGATCGCACACACGAAGATAT 59.638 45.455 0.00 0.00 46.59 1.63
1859 2266 0.532573 AGGATCGCACACACGAAGAT 59.467 50.000 0.00 0.00 46.59 2.40
1870 2277 2.036571 CAGCACAAGCAGGATCGCA 61.037 57.895 0.00 0.00 45.49 5.10
1871 2278 2.789917 CAGCACAAGCAGGATCGC 59.210 61.111 0.00 0.00 45.49 4.58
1883 2290 3.053896 GTAACCCGTGGCCAGCAC 61.054 66.667 5.11 0.00 0.00 4.40
1886 2293 1.072505 AACAGTAACCCGTGGCCAG 59.927 57.895 5.11 0.00 0.00 4.85
1890 2297 1.670791 ACAACAACAGTAACCCGTGG 58.329 50.000 0.00 0.00 0.00 4.94
1895 2302 8.745464 TGAAAAACTAAACAACAACAGTAACC 57.255 30.769 0.00 0.00 0.00 2.85
1899 2306 5.867174 GGCTGAAAAACTAAACAACAACAGT 59.133 36.000 0.00 0.00 0.00 3.55
1900 2307 5.004345 CGGCTGAAAAACTAAACAACAACAG 59.996 40.000 0.00 0.00 0.00 3.16
1901 2308 4.859798 CGGCTGAAAAACTAAACAACAACA 59.140 37.500 0.00 0.00 0.00 3.33
1902 2309 4.266739 CCGGCTGAAAAACTAAACAACAAC 59.733 41.667 0.00 0.00 0.00 3.32
1904 2311 3.181485 CCCGGCTGAAAAACTAAACAACA 60.181 43.478 0.00 0.00 0.00 3.33
1908 2315 1.336517 GGCCCGGCTGAAAAACTAAAC 60.337 52.381 9.86 0.00 0.00 2.01
1909 2316 0.963225 GGCCCGGCTGAAAAACTAAA 59.037 50.000 9.86 0.00 0.00 1.85
1911 2318 1.673009 CGGCCCGGCTGAAAAACTA 60.673 57.895 13.55 0.00 37.02 2.24
1912 2319 2.983592 CGGCCCGGCTGAAAAACT 60.984 61.111 13.55 0.00 37.02 2.66
1913 2320 3.292159 ACGGCCCGGCTGAAAAAC 61.292 61.111 25.65 0.00 38.46 2.43
1914 2321 3.291383 CACGGCCCGGCTGAAAAA 61.291 61.111 25.65 0.00 38.46 1.94
1920 2327 3.912745 CTAAAACCACGGCCCGGCT 62.913 63.158 8.57 0.00 0.00 5.52
1921 2328 3.436924 CTAAAACCACGGCCCGGC 61.437 66.667 8.57 0.00 0.00 6.13
1922 2329 3.436924 GCTAAAACCACGGCCCGG 61.437 66.667 8.57 4.24 0.00 5.73
1923 2330 2.670251 TGCTAAAACCACGGCCCG 60.670 61.111 0.00 0.00 0.00 6.13
1932 2339 6.683974 ATGTGAGATATGGTGTGCTAAAAC 57.316 37.500 0.00 0.00 0.00 2.43
1957 2364 4.634000 CATCGCAATTGAGCAAACATTTG 58.366 39.130 10.34 0.00 41.03 2.32
1959 2366 2.669434 GCATCGCAATTGAGCAAACATT 59.331 40.909 10.34 0.00 0.00 2.71
1967 2374 1.402613 TGACATGGCATCGCAATTGAG 59.597 47.619 10.34 6.17 0.00 3.02
1969 2376 2.124122 CATGACATGGCATCGCAATTG 58.876 47.619 12.33 0.00 0.00 2.32
1970 2377 1.752498 ACATGACATGGCATCGCAATT 59.248 42.857 12.33 0.00 33.60 2.32
1971 2378 1.395635 ACATGACATGGCATCGCAAT 58.604 45.000 12.33 0.00 33.60 3.56
1972 2379 1.132834 GAACATGACATGGCATCGCAA 59.867 47.619 12.33 0.00 33.60 4.85
1973 2380 0.734309 GAACATGACATGGCATCGCA 59.266 50.000 12.33 0.00 33.60 5.10
1974 2381 0.316442 CGAACATGACATGGCATCGC 60.316 55.000 12.33 2.79 31.77 4.58
1975 2382 0.316442 GCGAACATGACATGGCATCG 60.316 55.000 24.32 24.32 37.73 3.84
1976 2383 1.019673 AGCGAACATGACATGGCATC 58.980 50.000 12.33 12.72 33.60 3.91
1977 2384 1.402968 GAAGCGAACATGACATGGCAT 59.597 47.619 19.39 8.71 33.60 4.40
1978 2385 0.804364 GAAGCGAACATGACATGGCA 59.196 50.000 19.39 2.18 33.60 4.92
1979 2386 1.089920 AGAAGCGAACATGACATGGC 58.910 50.000 19.39 12.78 33.60 4.40
1980 2387 2.743664 TGAAGAAGCGAACATGACATGG 59.256 45.455 19.39 3.30 33.60 3.66
1981 2388 4.142752 ACATGAAGAAGCGAACATGACATG 60.143 41.667 14.02 14.02 41.45 3.21
1982 2389 4.005650 ACATGAAGAAGCGAACATGACAT 58.994 39.130 0.00 0.00 41.45 3.06
1983 2390 3.187022 CACATGAAGAAGCGAACATGACA 59.813 43.478 0.00 0.00 41.45 3.58
1984 2391 3.187227 ACACATGAAGAAGCGAACATGAC 59.813 43.478 0.00 0.00 41.45 3.06
1985 2392 3.187022 CACACATGAAGAAGCGAACATGA 59.813 43.478 0.00 0.00 41.45 3.07
1986 2393 3.485633 CACACATGAAGAAGCGAACATG 58.514 45.455 0.00 0.00 43.56 3.21
1987 2394 2.095567 GCACACATGAAGAAGCGAACAT 60.096 45.455 0.00 0.00 0.00 2.71
1988 2395 1.264020 GCACACATGAAGAAGCGAACA 59.736 47.619 0.00 0.00 0.00 3.18
1989 2396 1.264020 TGCACACATGAAGAAGCGAAC 59.736 47.619 0.00 0.00 0.00 3.95
1990 2397 1.532437 CTGCACACATGAAGAAGCGAA 59.468 47.619 0.00 0.00 32.29 4.70
1991 2398 1.150827 CTGCACACATGAAGAAGCGA 58.849 50.000 0.00 0.00 32.29 4.93
1992 2399 0.870393 ACTGCACACATGAAGAAGCG 59.130 50.000 0.00 2.30 34.64 4.68
1993 2400 1.198637 GGACTGCACACATGAAGAAGC 59.801 52.381 0.00 2.82 34.64 3.86
1994 2401 2.483106 CAGGACTGCACACATGAAGAAG 59.517 50.000 0.00 0.00 34.64 2.85
2010 2417 2.098607 TCGTCACGACCATAATCAGGAC 59.901 50.000 0.00 0.00 0.00 3.85
2027 2434 7.404139 AACTAACAAACAATAGTGACTCGTC 57.596 36.000 0.00 0.00 32.84 4.20
2029 2436 8.548721 AGAAAACTAACAAACAATAGTGACTCG 58.451 33.333 0.00 0.00 32.84 4.18
2042 2449 4.678309 CGGCCAAACCAGAAAACTAACAAA 60.678 41.667 2.24 0.00 39.03 2.83
2064 2471 1.720694 AAAGGTGTGCCGAAACCACG 61.721 55.000 0.00 0.00 39.05 4.94
2072 2479 3.029735 GCGCAAAAAGGTGTGCCG 61.030 61.111 0.30 0.00 46.93 5.69
2077 2484 0.103937 TTTGGAGGCGCAAAAAGGTG 59.896 50.000 10.83 0.00 0.00 4.00
2241 4932 4.991056 TCATGAACTTTGGAGAAGAACTCG 59.009 41.667 0.00 0.00 45.76 4.18
2243 4934 6.654161 CAGATCATGAACTTTGGAGAAGAACT 59.346 38.462 2.17 0.00 0.00 3.01
2244 4935 6.128063 CCAGATCATGAACTTTGGAGAAGAAC 60.128 42.308 2.17 0.00 0.00 3.01
2245 4936 5.942236 CCAGATCATGAACTTTGGAGAAGAA 59.058 40.000 2.17 0.00 0.00 2.52
2279 4971 8.467402 AGCGACAAGAATATTATAGTACATGC 57.533 34.615 0.00 0.00 0.00 4.06
2286 4978 8.012241 GCCTTGAAAGCGACAAGAATATTATAG 58.988 37.037 17.37 4.01 44.92 1.31
2291 4988 4.265073 AGCCTTGAAAGCGACAAGAATAT 58.735 39.130 17.37 3.24 44.92 1.28
2293 4990 2.485814 GAGCCTTGAAAGCGACAAGAAT 59.514 45.455 17.37 8.67 44.92 2.40
2461 5159 4.040339 ACATGACATGACAACTGGACTACA 59.960 41.667 22.19 0.00 0.00 2.74
2502 5200 5.822519 TGGAGTAGGCAATAGCAATTAACAG 59.177 40.000 0.00 0.00 44.61 3.16
2503 5201 5.750524 TGGAGTAGGCAATAGCAATTAACA 58.249 37.500 0.00 0.00 44.61 2.41
2504 5202 6.693315 TTGGAGTAGGCAATAGCAATTAAC 57.307 37.500 0.00 0.00 44.61 2.01
2505 5203 7.341769 ACATTTGGAGTAGGCAATAGCAATTAA 59.658 33.333 0.00 0.00 44.61 1.40
2506 5204 6.833416 ACATTTGGAGTAGGCAATAGCAATTA 59.167 34.615 0.00 0.00 44.61 1.40
2507 5205 5.658190 ACATTTGGAGTAGGCAATAGCAATT 59.342 36.000 0.00 0.00 44.61 2.32
2508 5206 5.203528 ACATTTGGAGTAGGCAATAGCAAT 58.796 37.500 0.00 0.00 44.61 3.56
2509 5207 4.599041 ACATTTGGAGTAGGCAATAGCAA 58.401 39.130 0.00 0.00 44.61 3.91
2539 5237 3.181427 TGGTAAGGTTACAGCATTGGGTT 60.181 43.478 2.44 0.00 35.37 4.11
2540 5238 2.377193 TGGTAAGGTTACAGCATTGGGT 59.623 45.455 2.44 0.00 35.37 4.51
2541 5239 3.080300 TGGTAAGGTTACAGCATTGGG 57.920 47.619 2.44 0.00 35.37 4.12
2542 5240 4.269183 TGATGGTAAGGTTACAGCATTGG 58.731 43.478 2.44 0.00 35.37 3.16
2543 5241 4.943705 ACTGATGGTAAGGTTACAGCATTG 59.056 41.667 2.44 0.00 35.37 2.82
2544 5242 5.179452 ACTGATGGTAAGGTTACAGCATT 57.821 39.130 2.44 0.00 35.37 3.56
2545 5243 4.844349 ACTGATGGTAAGGTTACAGCAT 57.156 40.909 2.44 0.00 35.37 3.79
2546 5244 4.634012 AACTGATGGTAAGGTTACAGCA 57.366 40.909 2.44 0.00 35.37 4.41
2547 5245 5.731591 AGTAACTGATGGTAAGGTTACAGC 58.268 41.667 14.38 0.00 43.44 4.40
2548 5246 7.926555 CCATAGTAACTGATGGTAAGGTTACAG 59.073 40.741 14.38 0.00 43.44 2.74
2549 5247 7.147620 CCCATAGTAACTGATGGTAAGGTTACA 60.148 40.741 14.38 4.49 43.44 2.41
2550 5248 7.215085 CCCATAGTAACTGATGGTAAGGTTAC 58.785 42.308 0.00 0.00 41.00 2.50
2551 5249 6.183361 GCCCATAGTAACTGATGGTAAGGTTA 60.183 42.308 0.00 0.00 41.00 2.85
2552 5250 5.397559 GCCCATAGTAACTGATGGTAAGGTT 60.398 44.000 0.00 0.00 41.00 3.50
2553 5251 4.102681 GCCCATAGTAACTGATGGTAAGGT 59.897 45.833 0.00 0.00 41.00 3.50
2554 5252 4.348168 AGCCCATAGTAACTGATGGTAAGG 59.652 45.833 0.00 0.00 41.00 2.69
2555 5253 5.552870 AGCCCATAGTAACTGATGGTAAG 57.447 43.478 0.00 0.00 41.00 2.34
2556 5254 5.190925 ACAAGCCCATAGTAACTGATGGTAA 59.809 40.000 0.00 0.00 41.00 2.85
2557 5255 4.719773 ACAAGCCCATAGTAACTGATGGTA 59.280 41.667 0.00 0.00 41.00 3.25
2558 5256 3.523564 ACAAGCCCATAGTAACTGATGGT 59.476 43.478 0.00 0.00 41.00 3.55
2559 5257 3.879295 CACAAGCCCATAGTAACTGATGG 59.121 47.826 0.00 0.00 42.06 3.51
2702 5400 6.073494 TGCCCGTATTAATATTGTTCATGTCG 60.073 38.462 0.00 0.00 0.00 4.35
2788 5486 4.999751 ATCAAGAGAAAGAACAGAACGC 57.000 40.909 0.00 0.00 0.00 4.84
2911 5609 8.035394 ACGTCAGAGTAATAAAGATGTCACAAT 58.965 33.333 0.00 0.00 0.00 2.71
2953 5651 7.004086 ACAATTTCATTTCTCCCTGTAACTGA 58.996 34.615 0.00 0.00 0.00 3.41
2959 5660 4.524328 GTCCACAATTTCATTTCTCCCTGT 59.476 41.667 0.00 0.00 0.00 4.00
2962 5663 3.119495 CCGTCCACAATTTCATTTCTCCC 60.119 47.826 0.00 0.00 0.00 4.30
2980 5681 1.066143 TCAATCAAAGGAGCTCCCGTC 60.066 52.381 29.54 4.15 40.87 4.79
2981 5682 0.984230 TCAATCAAAGGAGCTCCCGT 59.016 50.000 29.54 15.16 40.87 5.28
2982 5683 2.113860 TTCAATCAAAGGAGCTCCCG 57.886 50.000 29.54 17.88 40.87 5.14
3037 5739 9.592196 ACCATTCATAGCCTTAATGTTTGATAT 57.408 29.630 0.00 0.00 0.00 1.63
3752 6454 3.070476 TGGTCATATTCAGCAGTGCAA 57.930 42.857 19.20 3.82 0.00 4.08
3774 6476 7.553044 GGCCAACAGAGTATAGAAAATAAGTGT 59.447 37.037 0.00 0.00 0.00 3.55
3788 6490 4.098914 AGTTTCATTGGCCAACAGAGTA 57.901 40.909 23.27 10.84 0.00 2.59
3802 6504 7.177921 ACCATGTTCAGATGATCAAAGTTTCAT 59.822 33.333 0.00 0.00 35.33 2.57
3809 6511 5.535783 ACAACACCATGTTCAGATGATCAAA 59.464 36.000 0.00 0.00 38.77 2.69
3818 6520 2.687425 TCAACCACAACACCATGTTCAG 59.313 45.455 0.00 0.00 38.77 3.02
3828 6530 6.374613 TGTTTTGTACATAGTCAACCACAACA 59.625 34.615 0.00 0.00 0.00 3.33
3858 6560 6.316140 ACACGTTGCATCAAACATATACTGAT 59.684 34.615 0.00 0.00 0.00 2.90
3860 6562 5.868257 ACACGTTGCATCAAACATATACTG 58.132 37.500 0.00 0.00 0.00 2.74
3861 6563 5.641636 TGACACGTTGCATCAAACATATACT 59.358 36.000 0.00 0.00 0.00 2.12
3864 6582 5.369685 TTGACACGTTGCATCAAACATAT 57.630 34.783 0.00 0.00 29.56 1.78
3878 6596 6.816136 TCATATCTGTCCATTATTGACACGT 58.184 36.000 0.00 0.00 37.80 4.49
3880 6598 8.668510 AGTTCATATCTGTCCATTATTGACAC 57.331 34.615 0.00 0.00 37.80 3.67
3902 6620 8.793592 GGTGGTAGAACTCAAAATGAATAAGTT 58.206 33.333 0.00 0.00 33.09 2.66
3907 6625 7.004086 TGAAGGTGGTAGAACTCAAAATGAAT 58.996 34.615 0.00 0.00 0.00 2.57
3909 6627 5.935945 TGAAGGTGGTAGAACTCAAAATGA 58.064 37.500 0.00 0.00 0.00 2.57
3910 6628 5.335191 GCTGAAGGTGGTAGAACTCAAAATG 60.335 44.000 0.00 0.00 0.00 2.32
3916 6646 2.354203 CCTGCTGAAGGTGGTAGAACTC 60.354 54.545 0.00 0.00 41.74 3.01
4042 6772 4.154015 TCAAGTCGGTGCACAGAAAATATG 59.846 41.667 21.46 14.64 0.00 1.78
4778 7514 4.345859 ACCTGTCAAACTAATCCGTTCA 57.654 40.909 0.00 0.00 0.00 3.18
4841 7639 4.704540 CACAAGGGCAAACTAATCCATGTA 59.295 41.667 0.00 0.00 0.00 2.29
4949 7813 2.894902 TGACGTGCAAGTTGTAACTGA 58.105 42.857 6.76 0.00 39.66 3.41
4966 7830 3.618690 AAGCAAGTCCCTACAGATGAC 57.381 47.619 0.00 0.00 0.00 3.06
4983 7847 6.254281 TGGATTCTGTAAGCAAAGTTAAGC 57.746 37.500 0.00 0.00 0.00 3.09
5400 8268 1.514014 GCAAATTACACTGCGGCCG 60.514 57.895 24.05 24.05 0.00 6.13
5404 8272 2.153627 GCAACTTGCAAATTACACTGCG 59.846 45.455 8.97 0.00 44.26 5.18
5555 8423 4.517453 AGCCTCATAATACTCTCACGACTC 59.483 45.833 0.00 0.00 0.00 3.36
5560 8428 8.696410 GCTATTTAGCCTCATAATACTCTCAC 57.304 38.462 0.00 0.00 43.39 3.51
5675 8543 7.982371 AAGTAAGACACGGTTTATAGATTCG 57.018 36.000 0.00 0.00 0.00 3.34
5682 8550 9.715121 TCTTAATCAAAGTAAGACACGGTTTAT 57.285 29.630 0.00 0.00 33.61 1.40
5686 8554 7.215085 AGTTCTTAATCAAAGTAAGACACGGT 58.785 34.615 0.00 0.00 37.32 4.83
5689 8557 9.262358 ACAGAGTTCTTAATCAAAGTAAGACAC 57.738 33.333 0.00 0.97 37.32 3.67
5696 8564 7.445707 GGAAGGAACAGAGTTCTTAATCAAAGT 59.554 37.037 9.46 0.00 36.51 2.66
5728 8598 0.842030 ACCCACCTGATGCCAGAAGA 60.842 55.000 0.00 0.00 43.02 2.87
6003 8874 5.005740 AGAAAAGCATTAGAGCACATCACA 58.994 37.500 0.00 0.00 36.85 3.58
6048 8919 0.523335 GAACGTTGATGCCGATTGCC 60.523 55.000 5.00 0.00 40.16 4.52
6069 8940 1.302511 GGGCAGAAACCTTGAGCGA 60.303 57.895 0.00 0.00 0.00 4.93
6193 9064 3.829601 GGTATAGAGATCAGACTGTGGGG 59.170 52.174 1.59 0.00 0.00 4.96
6345 9216 6.066054 TCACGTGTTTCTTCAATGCAATTA 57.934 33.333 16.51 0.00 32.46 1.40
6423 9298 2.171003 GCAAGGAAGTTGGCAACCTAT 58.829 47.619 25.81 13.22 36.56 2.57
6565 9446 7.604927 GGTCCATTTGTACACAGTAACTAATCA 59.395 37.037 0.00 0.00 0.00 2.57
6567 9448 7.686434 AGGTCCATTTGTACACAGTAACTAAT 58.314 34.615 0.00 0.00 0.00 1.73
6797 9706 1.272781 GCGTCACTCAAAGATCCTCG 58.727 55.000 0.00 0.00 0.00 4.63
6836 9746 2.505405 GACAGGAAGGTTTCTGGGAAC 58.495 52.381 3.05 0.00 35.47 3.62
6853 9763 1.919240 TAACTCAGCGAAGGAGGACA 58.081 50.000 0.00 0.00 36.70 4.02
6875 9785 5.627499 ATGCACACGAAAATTACATGACT 57.373 34.783 0.00 0.00 0.00 3.41
7098 10011 2.427095 ACTGGCAAAGGAGACACAAAAC 59.573 45.455 0.00 0.00 0.00 2.43
7195 10109 1.947456 GAAGCAAACAGTTCGGGTTCT 59.053 47.619 16.72 0.00 35.51 3.01
7201 10115 1.068333 CCCATGGAAGCAAACAGTTCG 60.068 52.381 15.22 0.00 0.00 3.95
7205 10119 1.593265 GGCCCATGGAAGCAAACAG 59.407 57.895 15.22 0.00 0.00 3.16
7220 10134 1.609072 GACTTTTTCTCACAGTGGGCC 59.391 52.381 0.00 0.00 0.00 5.80
7221 10135 2.033424 GTGACTTTTTCTCACAGTGGGC 59.967 50.000 0.00 0.00 38.36 5.36
7231 10145 5.391312 AAGTTGCAACTGTGACTTTTTCT 57.609 34.783 31.73 9.45 39.66 2.52
7232 10146 5.405269 ACAAAGTTGCAACTGTGACTTTTTC 59.595 36.000 42.62 11.24 45.23 2.29
7238 10163 3.485947 TGACAAAGTTGCAACTGTGAC 57.514 42.857 42.62 37.28 45.23 3.67
7242 10167 4.501559 CAGTTCATGACAAAGTTGCAACTG 59.498 41.667 31.73 22.77 39.66 3.16
7286 10279 8.275632 GGAAAAAGAATAAGCACATGACAAAAC 58.724 33.333 0.00 0.00 0.00 2.43
7287 10280 7.440856 GGGAAAAAGAATAAGCACATGACAAAA 59.559 33.333 0.00 0.00 0.00 2.44
7294 10287 4.086457 ACCGGGAAAAAGAATAAGCACAT 58.914 39.130 6.32 0.00 0.00 3.21
7306 10299 3.090790 GGTATAAGGCAACCGGGAAAAA 58.909 45.455 6.32 0.00 37.17 1.94
7375 10483 1.402968 CCGTGCAAGCTTATTCATGCT 59.597 47.619 0.00 0.00 41.82 3.79
7476 10584 4.500265 ACATGCCTTGTGACACCC 57.500 55.556 2.45 0.00 37.11 4.61
7501 10614 4.867047 GCGGGAGTACTTTTTACTAAGGAC 59.133 45.833 0.00 0.00 38.93 3.85
7515 10628 8.092687 TCTTATATTTCTTTATGGCGGGAGTAC 58.907 37.037 0.00 0.00 0.00 2.73
7516 10629 8.197592 TCTTATATTTCTTTATGGCGGGAGTA 57.802 34.615 0.00 0.00 0.00 2.59
7517 10630 7.074653 TCTTATATTTCTTTATGGCGGGAGT 57.925 36.000 0.00 0.00 0.00 3.85
7518 10631 6.092807 GCTCTTATATTTCTTTATGGCGGGAG 59.907 42.308 0.00 0.00 0.00 4.30
7519 10632 5.938125 GCTCTTATATTTCTTTATGGCGGGA 59.062 40.000 0.00 0.00 0.00 5.14
7520 10633 5.163854 CGCTCTTATATTTCTTTATGGCGGG 60.164 44.000 0.00 0.00 35.20 6.13
7521 10634 5.408604 ACGCTCTTATATTTCTTTATGGCGG 59.591 40.000 0.00 0.00 41.56 6.13
7522 10635 6.145534 TCACGCTCTTATATTTCTTTATGGCG 59.854 38.462 0.00 0.00 42.65 5.69
7523 10636 7.360438 CCTCACGCTCTTATATTTCTTTATGGC 60.360 40.741 0.00 0.00 0.00 4.40
7524 10637 7.118390 CCCTCACGCTCTTATATTTCTTTATGG 59.882 40.741 0.00 0.00 0.00 2.74
7525 10638 7.872993 TCCCTCACGCTCTTATATTTCTTTATG 59.127 37.037 0.00 0.00 0.00 1.90
7526 10639 7.963532 TCCCTCACGCTCTTATATTTCTTTAT 58.036 34.615 0.00 0.00 0.00 1.40
7527 10640 7.069578 ACTCCCTCACGCTCTTATATTTCTTTA 59.930 37.037 0.00 0.00 0.00 1.85
7528 10641 6.127026 ACTCCCTCACGCTCTTATATTTCTTT 60.127 38.462 0.00 0.00 0.00 2.52
7529 10642 5.364157 ACTCCCTCACGCTCTTATATTTCTT 59.636 40.000 0.00 0.00 0.00 2.52
7530 10643 4.896482 ACTCCCTCACGCTCTTATATTTCT 59.104 41.667 0.00 0.00 0.00 2.52
7531 10644 5.203060 ACTCCCTCACGCTCTTATATTTC 57.797 43.478 0.00 0.00 0.00 2.17
7532 10645 5.597182 TGTACTCCCTCACGCTCTTATATTT 59.403 40.000 0.00 0.00 0.00 1.40
7533 10646 5.138276 TGTACTCCCTCACGCTCTTATATT 58.862 41.667 0.00 0.00 0.00 1.28
7534 10647 4.726583 TGTACTCCCTCACGCTCTTATAT 58.273 43.478 0.00 0.00 0.00 0.86
7535 10648 4.160642 TGTACTCCCTCACGCTCTTATA 57.839 45.455 0.00 0.00 0.00 0.98
7536 10649 3.014304 TGTACTCCCTCACGCTCTTAT 57.986 47.619 0.00 0.00 0.00 1.73
7537 10650 2.502142 TGTACTCCCTCACGCTCTTA 57.498 50.000 0.00 0.00 0.00 2.10
7538 10651 1.629043 TTGTACTCCCTCACGCTCTT 58.371 50.000 0.00 0.00 0.00 2.85
7539 10652 1.629043 TTTGTACTCCCTCACGCTCT 58.371 50.000 0.00 0.00 0.00 4.09
7540 10653 2.541556 GATTTGTACTCCCTCACGCTC 58.458 52.381 0.00 0.00 0.00 5.03
7541 10654 1.207329 GGATTTGTACTCCCTCACGCT 59.793 52.381 0.00 0.00 0.00 5.07
7542 10655 1.066430 TGGATTTGTACTCCCTCACGC 60.066 52.381 0.00 0.00 31.32 5.34
7543 10656 3.328382 TTGGATTTGTACTCCCTCACG 57.672 47.619 0.00 0.00 31.32 4.35
7544 10657 6.389906 CAAATTTGGATTTGTACTCCCTCAC 58.610 40.000 10.49 0.00 44.52 3.51
7545 10658 6.588719 CAAATTTGGATTTGTACTCCCTCA 57.411 37.500 10.49 0.00 44.52 3.86
7584 10697 9.201989 ACAGGACATATGTCTACTATCTTTCAA 57.798 33.333 29.87 0.00 44.20 2.69
7664 11229 8.837788 ACTGTGATACCATGATGTATTACATG 57.162 34.615 13.93 12.74 42.90 3.21
7672 11237 8.103305 GGGAAATATACTGTGATACCATGATGT 58.897 37.037 0.00 0.00 0.00 3.06
7673 11238 8.102676 TGGGAAATATACTGTGATACCATGATG 58.897 37.037 0.00 0.00 0.00 3.07
7674 11239 8.103305 GTGGGAAATATACTGTGATACCATGAT 58.897 37.037 0.00 0.00 0.00 2.45
7675 11240 7.071824 TGTGGGAAATATACTGTGATACCATGA 59.928 37.037 0.00 0.00 0.00 3.07
7676 11241 7.173218 GTGTGGGAAATATACTGTGATACCATG 59.827 40.741 0.00 0.00 0.00 3.66
7721 11286 2.993937 TGTTTTTCCGACTGTTCCTGT 58.006 42.857 0.00 0.00 0.00 4.00
7911 11476 3.181496 GGTAGATTGTTTAAGCTGCTGCC 60.181 47.826 12.44 0.00 40.80 4.85
8001 11566 1.246649 TCGGCACAGCAATCACATTT 58.753 45.000 0.00 0.00 0.00 2.32
8026 11591 3.476552 CTCTTGTTAAACACCAGCCTCA 58.523 45.455 0.00 0.00 0.00 3.86
8028 11593 2.230660 GCTCTTGTTAAACACCAGCCT 58.769 47.619 0.00 0.00 30.49 4.58
8077 11642 2.618045 CCGTATGAGCTTGGGAAGGTTT 60.618 50.000 0.00 0.00 39.77 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.