Multiple sequence alignment - TraesCS5B01G356000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G356000 chr5B 100.000 3875 0 0 1 3875 535698794 535702668 0.000000e+00 7156.0
1 TraesCS5B01G356000 chr5B 84.524 84 13 0 1445 1528 457134567 457134484 2.480000e-12 84.2
2 TraesCS5B01G356000 chr5D 92.362 3679 163 65 247 3875 440364903 440368513 0.000000e+00 5129.0
3 TraesCS5B01G356000 chr5D 96.020 201 7 1 1 200 440364710 440364910 3.730000e-85 326.0
4 TraesCS5B01G356000 chr5A 92.326 3323 148 49 618 3875 556524395 556527675 0.000000e+00 4625.0
5 TraesCS5B01G356000 chr5A 91.964 336 22 3 247 580 556523698 556524030 2.110000e-127 466.0
6 TraesCS5B01G356000 chr5A 91.586 309 23 2 3011 3319 450226294 450225989 1.290000e-114 424.0
7 TraesCS5B01G356000 chr5A 92.537 201 14 1 1 200 556523505 556523705 1.760000e-73 287.0
8 TraesCS5B01G356000 chr5A 83.838 99 16 0 1454 1552 680843400 680843302 1.150000e-15 95.3
9 TraesCS5B01G356000 chr5A 84.524 84 13 0 1445 1528 481903598 481903515 2.480000e-12 84.2
10 TraesCS5B01G356000 chr3A 91.331 323 25 2 3011 3332 17566508 17566828 4.600000e-119 438.0
11 TraesCS5B01G356000 chr7A 89.761 293 19 8 3073 3357 114354345 114354634 7.910000e-97 364.0
12 TraesCS5B01G356000 chr4B 83.838 99 16 0 1454 1552 643311160 643311062 1.150000e-15 95.3
13 TraesCS5B01G356000 chr2B 83.495 103 11 5 1441 1538 794866947 794866846 1.480000e-14 91.6
14 TraesCS5B01G356000 chr4D 82.828 99 17 0 1454 1552 500023833 500023735 5.330000e-14 89.8
15 TraesCS5B01G356000 chr2A 81.720 93 15 2 1447 1538 763313725 763313634 4.150000e-10 76.8
16 TraesCS5B01G356000 chr2A 100.000 31 0 0 1587 1617 55099964 55099934 1.500000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G356000 chr5B 535698794 535702668 3874 False 7156.000000 7156 100.000000 1 3875 1 chr5B.!!$F1 3874
1 TraesCS5B01G356000 chr5D 440364710 440368513 3803 False 2727.500000 5129 94.191000 1 3875 2 chr5D.!!$F1 3874
2 TraesCS5B01G356000 chr5A 556523505 556527675 4170 False 1792.666667 4625 92.275667 1 3875 3 chr5A.!!$F1 3874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 1166 0.250513 ATCGACCCAGAAGCCAGAAC 59.749 55.0 0.0 0.0 0.0 3.01 F
2568 2993 0.179073 GGTGGATGGATCAGGACACG 60.179 60.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2697 3122 0.032416 TCTGGTAGTACTCCTGGCCC 60.032 60.0 0.0 0.0 0.00 5.8 R
3745 4183 0.892755 CATGCAATGGAACCTGCTGT 59.107 50.0 0.0 0.0 41.79 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 193 0.828022 CCAATGGCTCCACAATGCAT 59.172 50.000 0.00 0.00 0.00 3.96
300 302 2.510382 TGGCATCTAAAATAACGGGGGA 59.490 45.455 0.00 0.00 0.00 4.81
320 322 4.460731 GGGAATGCTCAGCTTTTAACTCTT 59.539 41.667 0.00 0.00 0.00 2.85
373 375 4.286291 AGGCTATAGGTGTTTATAGGGTGC 59.714 45.833 1.04 0.00 35.23 5.01
447 451 3.888930 TCCTCAGCTTTTTAACTGTTGGG 59.111 43.478 2.69 0.00 35.37 4.12
497 501 7.865530 AAACCATTTATTAAGGACCTGGTTT 57.134 32.000 14.41 14.41 45.69 3.27
644 982 4.186159 AGAGAGAGAGTTACACGTCTAGC 58.814 47.826 0.00 0.00 0.00 3.42
645 983 4.081309 AGAGAGAGAGTTACACGTCTAGCT 60.081 45.833 0.00 0.00 0.00 3.32
651 989 5.353938 AGAGTTACACGTCTAGCTAGAGAG 58.646 45.833 23.87 21.14 32.01 3.20
652 990 5.127519 AGAGTTACACGTCTAGCTAGAGAGA 59.872 44.000 23.87 1.08 32.01 3.10
653 991 5.353938 AGTTACACGTCTAGCTAGAGAGAG 58.646 45.833 23.87 19.42 32.01 3.20
654 992 5.127519 AGTTACACGTCTAGCTAGAGAGAGA 59.872 44.000 23.87 7.06 32.01 3.10
816 1158 1.798735 GACGACGATCGACCCAGAA 59.201 57.895 24.34 0.00 43.74 3.02
818 1160 1.586564 CGACGATCGACCCAGAAGC 60.587 63.158 24.34 0.00 43.74 3.86
819 1161 1.227002 GACGATCGACCCAGAAGCC 60.227 63.158 24.34 0.00 0.00 4.35
820 1162 1.945354 GACGATCGACCCAGAAGCCA 61.945 60.000 24.34 0.00 0.00 4.75
821 1163 1.227089 CGATCGACCCAGAAGCCAG 60.227 63.158 10.26 0.00 0.00 4.85
822 1164 1.667154 CGATCGACCCAGAAGCCAGA 61.667 60.000 10.26 0.00 0.00 3.86
823 1165 0.537188 GATCGACCCAGAAGCCAGAA 59.463 55.000 0.00 0.00 0.00 3.02
824 1166 0.250513 ATCGACCCAGAAGCCAGAAC 59.749 55.000 0.00 0.00 0.00 3.01
928 1276 1.595382 AAAGTGCGCGTCTTGCTCT 60.595 52.632 16.19 0.00 43.27 4.09
963 1311 2.046892 CAACCTAGCTGCCGCAGT 60.047 61.111 21.29 10.81 39.10 4.40
1149 1497 3.011517 AAGTGCGAGCCCTGGGAT 61.012 61.111 19.27 11.32 0.00 3.85
1162 1510 1.379443 TGGGATCTCGCAGGTACGT 60.379 57.895 0.00 0.00 34.59 3.57
1163 1511 1.065928 GGGATCTCGCAGGTACGTG 59.934 63.158 11.20 11.20 0.00 4.49
1275 1627 1.333619 GCAGAGAAGTCGTTTTTGCCA 59.666 47.619 0.00 0.00 0.00 4.92
1465 1817 1.137086 CCATCGGGATGAAGAAGACGT 59.863 52.381 10.16 0.00 41.20 4.34
1582 1934 6.860790 TCGCCATCCAGGTATGTATAATTA 57.139 37.500 0.00 0.00 40.61 1.40
1652 2022 3.312828 GTGATCGTCATCTCCTATGCAC 58.687 50.000 0.00 0.00 0.00 4.57
1729 2111 2.387757 TCCTTTTCTTTTGTGCTGGCT 58.612 42.857 0.00 0.00 0.00 4.75
1786 2171 8.782339 ATGAAAGGCATAAAAATTTTCTGAGG 57.218 30.769 14.42 3.63 34.82 3.86
1873 2266 4.397417 GTCACTTTGCTTTCATCCAGCTAT 59.603 41.667 0.00 0.00 38.19 2.97
1874 2267 5.586243 GTCACTTTGCTTTCATCCAGCTATA 59.414 40.000 0.00 0.00 38.19 1.31
1875 2268 5.586243 TCACTTTGCTTTCATCCAGCTATAC 59.414 40.000 0.00 0.00 38.19 1.47
1876 2269 5.587844 CACTTTGCTTTCATCCAGCTATACT 59.412 40.000 0.00 0.00 38.19 2.12
1877 2270 5.819901 ACTTTGCTTTCATCCAGCTATACTC 59.180 40.000 0.00 0.00 38.19 2.59
1878 2271 5.620738 TTGCTTTCATCCAGCTATACTCT 57.379 39.130 0.00 0.00 38.19 3.24
1919 2317 0.667993 TCGCCTTGCTGTCCAAAAAG 59.332 50.000 0.00 0.00 31.94 2.27
1928 2326 7.433680 CCTTGCTGTCCAAAAAGTTTAACTAT 58.566 34.615 0.00 0.00 31.94 2.12
1979 2387 0.388134 TGTTCGTTCTCCAGCTACGC 60.388 55.000 1.05 0.00 35.40 4.42
2075 2489 3.616956 TTGGGTGAGATTAGAGCAGTG 57.383 47.619 0.00 0.00 0.00 3.66
2107 2521 4.162320 TCATGAGACACTAAAGGGCCTTAG 59.838 45.833 21.25 18.19 35.40 2.18
2497 2922 2.673368 GACTTGAGAACCCACAATAGCG 59.327 50.000 0.00 0.00 0.00 4.26
2568 2993 0.179073 GGTGGATGGATCAGGACACG 60.179 60.000 0.00 0.00 0.00 4.49
2718 3143 0.739561 GCCAGGAGTACTACCAGACG 59.260 60.000 0.00 0.00 0.00 4.18
2997 3425 5.858581 GGCAATTTATCAATAATCACCGAGC 59.141 40.000 0.00 0.00 0.00 5.03
3008 3436 2.030562 ACCGAGCGTTGAAGGTGG 59.969 61.111 0.00 0.00 35.36 4.61
3196 3624 9.202273 GATGATAGGAACAATCAGACTACATTC 57.798 37.037 0.00 0.00 36.82 2.67
3207 3635 7.730364 ATCAGACTACATTCGTGTTTTTCTT 57.270 32.000 0.00 0.00 0.00 2.52
3208 3636 7.173863 TCAGACTACATTCGTGTTTTTCTTC 57.826 36.000 0.00 0.00 0.00 2.87
3209 3637 6.984474 TCAGACTACATTCGTGTTTTTCTTCT 59.016 34.615 0.00 0.00 0.00 2.85
3214 3642 9.321562 ACTACATTCGTGTTTTTCTTCTTCTTA 57.678 29.630 0.00 0.00 0.00 2.10
3343 3774 8.428852 TCCATAGCATATATAGTTGTTGTGTGT 58.571 33.333 0.00 0.00 0.00 3.72
3344 3775 8.712363 CCATAGCATATATAGTTGTTGTGTGTC 58.288 37.037 0.00 0.00 0.00 3.67
3345 3776 6.828502 AGCATATATAGTTGTTGTGTGTCG 57.171 37.500 0.00 0.00 0.00 4.35
3346 3777 6.338146 AGCATATATAGTTGTTGTGTGTCGT 58.662 36.000 0.00 0.00 0.00 4.34
3458 3889 6.378280 CCTGGTTCTTATTGCCTGAGTAAATT 59.622 38.462 0.00 0.00 0.00 1.82
3469 3900 7.268199 TGCCTGAGTAAATTCATCATTCATC 57.732 36.000 0.00 0.00 0.00 2.92
3537 3968 7.721286 ATTTTTCGCAACCAAATTTGTATCA 57.279 28.000 16.73 0.00 0.00 2.15
3655 4087 8.795842 ATATTTCACCGTGAACCATTTTACTA 57.204 30.769 13.61 0.00 35.89 1.82
3716 4152 6.631971 TTTTCTGTACATCACATGCAAAGA 57.368 33.333 0.00 0.00 36.29 2.52
3719 4155 4.455533 TCTGTACATCACATGCAAAGAACC 59.544 41.667 0.00 0.00 36.29 3.62
3725 4163 4.299586 TCACATGCAAAGAACCATCCTA 57.700 40.909 0.00 0.00 0.00 2.94
3757 4195 5.437060 GAAAATCCTATACAGCAGGTTCCA 58.563 41.667 0.00 0.00 34.56 3.53
3760 4198 4.422073 TCCTATACAGCAGGTTCCATTG 57.578 45.455 0.00 0.00 34.56 2.82
3823 4261 6.767902 AGAAGCTTAATTGAACACTTCTGTGA 59.232 34.615 0.00 0.00 46.55 3.58
3850 4288 6.679327 AAAGCGTTGAAGGAATACTATTCC 57.321 37.500 17.28 17.28 38.86 3.01
3858 4296 7.308450 TGAAGGAATACTATTCCAGATCAGG 57.692 40.000 24.14 0.00 41.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.536006 AGCACCACTTGAAGGCACTC 60.536 55.000 0.00 0.00 38.49 3.51
43 44 1.677217 CCTCTAGCACCACTTGAAGGC 60.677 57.143 0.00 0.00 29.42 4.35
257 259 9.232473 TGCCACTTACACACATTTTATGTTATA 57.768 29.630 0.00 0.00 42.70 0.98
258 260 8.116651 TGCCACTTACACACATTTTATGTTAT 57.883 30.769 0.00 0.00 42.70 1.89
259 261 7.511959 TGCCACTTACACACATTTTATGTTA 57.488 32.000 0.00 0.00 42.70 2.41
300 302 5.072741 TCCAAGAGTTAAAAGCTGAGCATT 58.927 37.500 7.39 0.00 0.00 3.56
320 322 3.551659 CGCATCATCTTTCTCTCGATCCA 60.552 47.826 0.00 0.00 0.00 3.41
338 340 2.950309 CCTATAGCCTCGGTATACGCAT 59.050 50.000 0.00 0.00 43.86 4.73
341 343 3.341823 ACACCTATAGCCTCGGTATACG 58.658 50.000 0.00 0.00 46.11 3.06
373 375 2.419673 TGCTACATTGTTTGAGCATCCG 59.580 45.455 8.34 0.00 39.93 4.18
426 430 3.552890 GCCCAACAGTTAAAAAGCTGAGG 60.553 47.826 0.00 0.00 36.62 3.86
600 605 1.829849 TCTCTCATCCTGGCAAGTGAG 59.170 52.381 14.02 14.02 39.47 3.51
644 982 2.295909 CGCCCCTCATTTCTCTCTCTAG 59.704 54.545 0.00 0.00 0.00 2.43
645 983 2.311463 CGCCCCTCATTTCTCTCTCTA 58.689 52.381 0.00 0.00 0.00 2.43
651 989 1.521681 CGACCGCCCCTCATTTCTC 60.522 63.158 0.00 0.00 0.00 2.87
652 990 2.584608 CGACCGCCCCTCATTTCT 59.415 61.111 0.00 0.00 0.00 2.52
653 991 2.513897 CCGACCGCCCCTCATTTC 60.514 66.667 0.00 0.00 0.00 2.17
654 992 4.796495 GCCGACCGCCCCTCATTT 62.796 66.667 0.00 0.00 0.00 2.32
754 1096 0.386113 CGTCCTCCCCTCGAGATTTC 59.614 60.000 15.71 0.00 41.63 2.17
816 1158 3.584733 AGGTTTTCTCTTGTTCTGGCT 57.415 42.857 0.00 0.00 0.00 4.75
818 1160 9.720769 TTATAAGTAGGTTTTCTCTTGTTCTGG 57.279 33.333 0.00 0.00 0.00 3.86
820 1162 9.945904 CCTTATAAGTAGGTTTTCTCTTGTTCT 57.054 33.333 11.50 0.00 0.00 3.01
821 1163 9.163899 CCCTTATAAGTAGGTTTTCTCTTGTTC 57.836 37.037 11.50 0.00 0.00 3.18
822 1164 7.610692 GCCCTTATAAGTAGGTTTTCTCTTGTT 59.389 37.037 11.50 0.00 0.00 2.83
823 1165 7.110810 GCCCTTATAAGTAGGTTTTCTCTTGT 58.889 38.462 11.50 0.00 0.00 3.16
824 1166 7.110155 TGCCCTTATAAGTAGGTTTTCTCTTG 58.890 38.462 11.50 0.00 0.00 3.02
1044 1392 0.540830 AGTTCACCAGCTCCTCGTCT 60.541 55.000 0.00 0.00 0.00 4.18
1149 1497 0.956902 TACTGCACGTACCTGCGAGA 60.957 55.000 16.73 3.18 40.31 4.04
1163 1511 2.125673 ATCGGTGGTGCGTACTGC 60.126 61.111 3.01 3.22 46.70 4.40
1320 1672 2.587889 CGGAAGCCGTTGGGGTAT 59.412 61.111 0.00 0.00 45.20 2.73
1354 1706 0.910088 GACTTCCAGTACCCTGCCCT 60.910 60.000 0.00 0.00 37.38 5.19
1440 1792 3.087253 TTCATCCCGATGGCCCGT 61.087 61.111 0.00 0.00 39.24 5.28
1446 1798 2.586258 ACGTCTTCTTCATCCCGATG 57.414 50.000 0.00 0.00 40.09 3.84
1515 1867 1.878522 GAGGCGGTACTCGTGCATG 60.879 63.158 0.00 0.00 41.72 4.06
1582 1934 4.020543 AGCTAGAGAGAACGAAGGTGATT 58.979 43.478 0.00 0.00 0.00 2.57
1729 2111 4.420522 AGCAGAAAATTTTCTTTGCCCA 57.579 36.364 28.09 0.00 44.70 5.36
1786 2171 7.203218 GTGATAGAAAGCCATGTTTTAATCCC 58.797 38.462 0.00 0.00 0.00 3.85
1873 2266 6.628175 GCCTACATGTTTGTCTCATCAGAGTA 60.628 42.308 2.30 0.00 42.66 2.59
1874 2267 5.728471 CCTACATGTTTGTCTCATCAGAGT 58.272 41.667 2.30 0.00 42.66 3.24
1875 2268 4.569966 GCCTACATGTTTGTCTCATCAGAG 59.430 45.833 2.30 0.00 43.48 3.35
1876 2269 4.507710 GCCTACATGTTTGTCTCATCAGA 58.492 43.478 2.30 0.00 37.28 3.27
1877 2270 3.624861 GGCCTACATGTTTGTCTCATCAG 59.375 47.826 2.30 0.00 37.28 2.90
1878 2271 3.264193 AGGCCTACATGTTTGTCTCATCA 59.736 43.478 1.29 0.00 37.28 3.07
1919 2317 7.539710 CCCGGCTTTTACTTTTGATAGTTAAAC 59.460 37.037 0.00 0.00 0.00 2.01
1928 2326 0.963225 GCCCCGGCTTTTACTTTTGA 59.037 50.000 0.00 0.00 38.26 2.69
2055 2468 2.906389 ACACTGCTCTAATCTCACCCAA 59.094 45.455 0.00 0.00 0.00 4.12
2075 2489 2.969990 AGTGTCTCATGATCAGTGCAC 58.030 47.619 9.40 9.40 0.00 4.57
2446 2871 5.299028 TGAAAGTTTATGCACACACTGATGT 59.701 36.000 0.00 0.00 40.80 3.06
2486 2911 1.349026 AGATCCATCCGCTATTGTGGG 59.651 52.381 6.91 0.00 43.72 4.61
2497 2922 6.866010 AAAAAGCAAAAACAAGATCCATCC 57.134 33.333 0.00 0.00 0.00 3.51
2521 2946 9.045745 TGCATGGTATATTAACTCATGATAGGA 57.954 33.333 0.00 0.00 37.87 2.94
2694 3119 1.390383 GGTAGTACTCCTGGCCCGTC 61.390 65.000 0.00 0.00 0.00 4.79
2695 3120 1.380920 GGTAGTACTCCTGGCCCGT 60.381 63.158 0.00 0.00 0.00 5.28
2697 3122 0.032416 TCTGGTAGTACTCCTGGCCC 60.032 60.000 0.00 0.00 0.00 5.80
2700 3125 0.739561 GCGTCTGGTAGTACTCCTGG 59.260 60.000 0.00 0.00 0.00 4.45
2997 3425 3.751175 TGCTTAATCTTCCACCTTCAACG 59.249 43.478 0.00 0.00 0.00 4.10
3089 3517 0.179065 CTTGAGGCCAGCATCGATCA 60.179 55.000 5.01 0.00 0.00 2.92
3165 3593 7.975608 AGTCTGATTGTTCCTATCATCATCAT 58.024 34.615 0.00 0.00 32.00 2.45
3166 3594 7.370905 AGTCTGATTGTTCCTATCATCATCA 57.629 36.000 0.00 0.00 32.00 3.07
3196 3624 8.895845 CATGAACATAAGAAGAAGAAAAACACG 58.104 33.333 0.00 0.00 0.00 4.49
3207 3635 6.151648 CCAAGGAAAGCATGAACATAAGAAGA 59.848 38.462 0.00 0.00 0.00 2.87
3208 3636 6.071728 ACCAAGGAAAGCATGAACATAAGAAG 60.072 38.462 0.00 0.00 0.00 2.85
3209 3637 5.774690 ACCAAGGAAAGCATGAACATAAGAA 59.225 36.000 0.00 0.00 0.00 2.52
3214 3642 3.233507 ACACCAAGGAAAGCATGAACAT 58.766 40.909 0.00 0.00 0.00 2.71
3343 3774 4.788679 TCTATTGACATACAGGGAGACGA 58.211 43.478 0.00 0.00 0.00 4.20
3344 3775 5.515797 TTCTATTGACATACAGGGAGACG 57.484 43.478 0.00 0.00 0.00 4.18
3345 3776 7.500992 TCAATTCTATTGACATACAGGGAGAC 58.499 38.462 0.00 0.00 0.00 3.36
3346 3777 7.675161 TCAATTCTATTGACATACAGGGAGA 57.325 36.000 0.00 0.00 0.00 3.71
3391 3822 1.447314 GCAAATTGAGCAGGCAGGC 60.447 57.895 0.00 0.00 0.00 4.85
3506 3937 9.527566 CAAATTTGGTTGCGAAAAATTATACTG 57.472 29.630 10.49 2.14 33.51 2.74
3512 3943 8.147642 TGATACAAATTTGGTTGCGAAAAATT 57.852 26.923 21.74 3.71 35.55 1.82
3519 3950 7.275341 ACAATGTATGATACAAATTTGGTTGCG 59.725 33.333 21.74 0.00 42.76 4.85
3634 4066 7.513371 AAATAGTAAAATGGTTCACGGTGAA 57.487 32.000 19.07 19.07 33.32 3.18
3664 4096 6.851222 AGGTTTTCAGCATACGAAGATATG 57.149 37.500 0.00 0.00 35.91 1.78
3697 4133 4.216042 TGGTTCTTTGCATGTGATGTACAG 59.784 41.667 0.33 0.00 43.80 2.74
3698 4134 4.140536 TGGTTCTTTGCATGTGATGTACA 58.859 39.130 0.00 0.00 44.87 2.90
3702 4138 3.446161 AGGATGGTTCTTTGCATGTGATG 59.554 43.478 0.00 0.00 0.00 3.07
3716 4152 8.067488 AGGATTTTCCATGTTTATAGGATGGTT 58.933 33.333 0.00 0.00 39.61 3.67
3725 4163 8.995027 TGCTGTATAGGATTTTCCATGTTTAT 57.005 30.769 0.00 0.00 39.61 1.40
3745 4183 0.892755 CATGCAATGGAACCTGCTGT 59.107 50.000 0.00 0.00 41.79 4.40
3790 4228 4.928661 TCAATTAAGCTTCTTCGTCAGC 57.071 40.909 0.00 0.00 36.16 4.26
3823 4261 5.767816 AGTATTCCTTCAACGCTTTTGTT 57.232 34.783 0.00 0.00 0.00 2.83
3850 4288 2.923121 CATGTGGTAACCCCTGATCTG 58.077 52.381 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.