Multiple sequence alignment - TraesCS5B01G355900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G355900 chr5B 100.000 3101 0 0 1 3101 535362065 535358965 0.000000e+00 5727.0
1 TraesCS5B01G355900 chr5B 92.584 1362 62 27 953 2311 535333097 535331772 0.000000e+00 1919.0
2 TraesCS5B01G355900 chr5B 94.672 244 8 4 2859 3101 17949219 17948980 1.050000e-99 374.0
3 TraesCS5B01G355900 chr5B 90.909 132 6 3 2336 2466 535331424 535331298 4.110000e-39 172.0
4 TraesCS5B01G355900 chr5B 90.909 44 2 1 358 401 535389015 535388974 1.200000e-04 58.4
5 TraesCS5B01G355900 chr5D 90.174 1954 109 33 657 2593 440248678 440246791 0.000000e+00 2468.0
6 TraesCS5B01G355900 chr5D 87.719 456 32 8 43 491 440249655 440249217 7.670000e-141 510.0
7 TraesCS5B01G355900 chr5D 90.173 173 12 4 2691 2862 440242950 440242782 1.450000e-53 220.0
8 TraesCS5B01G355900 chr5D 86.029 136 18 1 489 624 440249088 440248954 8.960000e-31 145.0
9 TraesCS5B01G355900 chrUn 91.518 731 47 5 1386 2110 316845915 316845194 0.000000e+00 992.0
10 TraesCS5B01G355900 chrUn 92.135 178 11 3 2123 2299 316844979 316844804 6.640000e-62 248.0
11 TraesCS5B01G355900 chrUn 83.125 160 7 7 2381 2533 316844681 316844535 9.030000e-26 128.0
12 TraesCS5B01G355900 chr5A 91.518 731 47 5 1386 2110 556005001 556004280 0.000000e+00 992.0
13 TraesCS5B01G355900 chr5A 89.808 677 26 11 716 1390 556006535 556005900 0.000000e+00 828.0
14 TraesCS5B01G355900 chr5A 89.727 477 30 6 43 514 556011755 556011293 2.660000e-165 592.0
15 TraesCS5B01G355900 chr5A 92.135 178 11 3 2123 2299 556004065 556003890 6.640000e-62 248.0
16 TraesCS5B01G355900 chr5A 83.125 160 7 7 2381 2533 556003767 556003621 9.030000e-26 128.0
17 TraesCS5B01G355900 chr4B 95.455 242 6 2 2863 3101 368413520 368413759 6.280000e-102 381.0
18 TraesCS5B01G355900 chr2B 93.333 240 13 3 2863 3101 59067327 59067090 4.920000e-93 351.0
19 TraesCS5B01G355900 chr2B 92.083 240 11 5 2868 3101 2634435 2634198 6.410000e-87 331.0
20 TraesCS5B01G355900 chr7B 92.827 237 12 4 2864 3100 510520807 510521038 3.830000e-89 339.0
21 TraesCS5B01G355900 chr7B 91.803 244 13 4 2863 3101 703726357 703726598 1.780000e-87 333.0
22 TraesCS5B01G355900 chr7B 92.373 236 13 3 2868 3101 166235876 166236108 6.410000e-87 331.0
23 TraesCS5B01G355900 chr7B 91.632 239 10 3 2863 3101 158912591 158912819 3.860000e-84 322.0
24 TraesCS5B01G355900 chr1B 91.393 244 15 6 2861 3101 32401958 32402198 2.310000e-86 329.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G355900 chr5B 535358965 535362065 3100 True 5727.00 5727 100.00000 1 3101 1 chr5B.!!$R2 3100
1 TraesCS5B01G355900 chr5B 535331298 535333097 1799 True 1045.50 1919 91.74650 953 2466 2 chr5B.!!$R4 1513
2 TraesCS5B01G355900 chr5D 440242782 440249655 6873 True 835.75 2468 88.52375 43 2862 4 chr5D.!!$R1 2819
3 TraesCS5B01G355900 chrUn 316844535 316845915 1380 True 456.00 992 88.92600 1386 2533 3 chrUn.!!$R1 1147
4 TraesCS5B01G355900 chr5A 556003621 556006535 2914 True 549.00 992 89.14650 716 2533 4 chr5A.!!$R2 1817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 1047 0.035056 CTACCTCTTGGCCACCCTTG 60.035 60.0 3.88 0.0 36.63 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2636 4508 0.036388 GCTAGGTAGCTGCCACACAA 60.036 55.0 23.78 1.91 45.62 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.921637 ACTAGTGATACTAAGTACGATACTACC 57.078 37.037 0.00 0.00 38.26 3.18
29 30 9.920133 CTAGTGATACTAAGTACGATACTACCA 57.080 37.037 0.00 0.00 38.26 3.25
31 32 9.790344 AGTGATACTAAGTACGATACTACCATT 57.210 33.333 0.00 0.00 38.26 3.16
37 38 8.624776 ACTAAGTACGATACTACCATTACAACC 58.375 37.037 0.00 0.00 38.26 3.77
38 39 7.408756 AAGTACGATACTACCATTACAACCA 57.591 36.000 0.00 0.00 38.26 3.67
39 40 7.035840 AGTACGATACTACCATTACAACCAG 57.964 40.000 0.00 0.00 37.23 4.00
40 41 4.690122 ACGATACTACCATTACAACCAGC 58.310 43.478 0.00 0.00 0.00 4.85
41 42 4.056050 CGATACTACCATTACAACCAGCC 58.944 47.826 0.00 0.00 0.00 4.85
60 61 1.325640 CCTCAACGAAGACATGATGCG 59.674 52.381 0.00 0.00 0.00 4.73
72 73 4.568359 AGACATGATGCGTGAGATTAACAC 59.432 41.667 0.00 0.00 35.26 3.32
80 81 3.372206 GCGTGAGATTAACACAGAGCAAT 59.628 43.478 0.00 0.00 38.04 3.56
101 102 1.741528 CCAATGCAAATGAAAGGGCC 58.258 50.000 0.00 0.00 0.00 5.80
102 103 1.679640 CCAATGCAAATGAAAGGGCCC 60.680 52.381 16.46 16.46 0.00 5.80
110 111 1.286248 ATGAAAGGGCCCGAACTACT 58.714 50.000 18.44 0.00 0.00 2.57
122 123 4.632688 GCCCGAACTACTAAATGCTTACAA 59.367 41.667 0.00 0.00 0.00 2.41
123 124 5.296035 GCCCGAACTACTAAATGCTTACAAT 59.704 40.000 0.00 0.00 0.00 2.71
124 125 6.480981 GCCCGAACTACTAAATGCTTACAATA 59.519 38.462 0.00 0.00 0.00 1.90
125 126 7.172703 GCCCGAACTACTAAATGCTTACAATAT 59.827 37.037 0.00 0.00 0.00 1.28
178 179 1.614996 TATTGGGTGTGCACAACTGG 58.385 50.000 32.45 0.00 41.32 4.00
200 201 9.148879 ACTGGCATCCATATATAATACTCTACC 57.851 37.037 0.00 0.00 30.82 3.18
219 220 2.566833 CCTGAATGGGACACTCAACA 57.433 50.000 0.00 0.00 46.49 3.33
221 222 2.751259 CCTGAATGGGACACTCAACATG 59.249 50.000 0.00 0.00 46.49 3.21
237 238 2.731571 ATGTGGAGCGCGTGGGTAT 61.732 57.895 8.43 0.00 0.00 2.73
238 239 1.396607 ATGTGGAGCGCGTGGGTATA 61.397 55.000 8.43 0.00 0.00 1.47
239 240 1.366366 GTGGAGCGCGTGGGTATAT 59.634 57.895 8.43 0.00 0.00 0.86
240 241 0.599558 GTGGAGCGCGTGGGTATATA 59.400 55.000 8.43 0.00 0.00 0.86
241 242 1.203994 GTGGAGCGCGTGGGTATATAT 59.796 52.381 8.43 0.00 0.00 0.86
242 243 2.424601 GTGGAGCGCGTGGGTATATATA 59.575 50.000 8.43 0.00 0.00 0.86
243 244 2.686405 TGGAGCGCGTGGGTATATATAG 59.314 50.000 8.43 0.00 0.00 1.31
254 255 8.950210 GCGTGGGTATATATAGTAGACAAGTAA 58.050 37.037 0.00 0.00 0.00 2.24
275 276 6.993902 AGTAAACCAAATAGTCGTTCCTTTCA 59.006 34.615 0.00 0.00 0.00 2.69
283 284 8.552034 CAAATAGTCGTTCCTTTCAGGATTATC 58.448 37.037 0.00 0.00 45.34 1.75
284 285 5.024785 AGTCGTTCCTTTCAGGATTATCC 57.975 43.478 2.40 2.40 45.34 2.59
315 316 4.483476 AAAGAAACATCGCTAACCACAC 57.517 40.909 0.00 0.00 0.00 3.82
317 318 0.515564 AAACATCGCTAACCACACGC 59.484 50.000 0.00 0.00 0.00 5.34
318 319 1.296056 AACATCGCTAACCACACGCC 61.296 55.000 0.00 0.00 0.00 5.68
351 352 0.859232 GTGTGTGTGGTAAGCTGTCG 59.141 55.000 0.00 0.00 0.00 4.35
355 356 2.033151 GTGTGTGGTAAGCTGTCGAAAC 60.033 50.000 0.00 0.00 0.00 2.78
376 377 7.010183 CGAAACGGAAAGAGATAAATCTTGCTA 59.990 37.037 0.00 0.00 39.47 3.49
377 378 8.561738 AAACGGAAAGAGATAAATCTTGCTAA 57.438 30.769 0.00 0.00 39.47 3.09
378 379 7.778470 ACGGAAAGAGATAAATCTTGCTAAG 57.222 36.000 0.00 0.00 39.47 2.18
403 404 2.880890 ACATTGCTTGTTGGAGACACTC 59.119 45.455 0.00 0.00 42.67 3.51
412 420 3.131396 GTTGGAGACACTCACGTTGATT 58.869 45.455 0.00 0.00 42.67 2.57
438 446 3.630769 TCGAGCGTGTATAAATCTGGAGT 59.369 43.478 0.00 0.00 0.00 3.85
449 457 8.434392 TGTATAAATCTGGAGTTGGGTATTACC 58.566 37.037 4.11 4.11 37.60 2.85
470 478 5.407049 ACCCCTCTATGCTATCACTTACAT 58.593 41.667 0.00 0.00 0.00 2.29
475 483 7.123997 CCCTCTATGCTATCACTTACATCATCT 59.876 40.741 0.00 0.00 0.00 2.90
515 654 3.731652 TTGGGCAAAACAATCTCACAG 57.268 42.857 0.00 0.00 0.00 3.66
517 656 3.499338 TGGGCAAAACAATCTCACAGAT 58.501 40.909 0.00 0.00 36.28 2.90
518 657 3.896888 TGGGCAAAACAATCTCACAGATT 59.103 39.130 0.00 0.00 45.23 2.40
522 661 6.366061 GGGCAAAACAATCTCACAGATTTAAC 59.634 38.462 0.00 0.00 41.90 2.01
555 694 8.753497 AGATTTTCTGATATTTTAGGACCCAC 57.247 34.615 0.00 0.00 0.00 4.61
556 695 7.780271 AGATTTTCTGATATTTTAGGACCCACC 59.220 37.037 0.00 0.00 39.35 4.61
579 718 7.122948 CACCTATGTCCTAACATATACTCCCTC 59.877 44.444 0.00 0.00 45.12 4.30
649 788 5.246145 ACTAACGTAGTCATTCTGCCTAC 57.754 43.478 0.00 0.00 45.00 3.18
650 789 3.521947 AACGTAGTCATTCTGCCTACC 57.478 47.619 0.00 0.00 45.00 3.18
651 790 2.736347 ACGTAGTCATTCTGCCTACCT 58.264 47.619 0.00 0.00 29.74 3.08
652 791 2.688958 ACGTAGTCATTCTGCCTACCTC 59.311 50.000 0.00 0.00 29.74 3.85
653 792 2.952978 CGTAGTCATTCTGCCTACCTCT 59.047 50.000 0.00 0.00 0.00 3.69
655 794 3.902881 AGTCATTCTGCCTACCTCTTG 57.097 47.619 0.00 0.00 0.00 3.02
665 1047 0.035056 CTACCTCTTGGCCACCCTTG 60.035 60.000 3.88 0.00 36.63 3.61
690 1078 1.725931 GCAAAGCCAACTTGATCGTCG 60.726 52.381 0.00 0.00 35.85 5.12
697 1085 4.278669 AGCCAACTTGATCGTCGTAGATAT 59.721 41.667 0.00 0.00 40.67 1.63
706 1098 6.617879 TGATCGTCGTAGATATATTTGGGTG 58.382 40.000 0.00 0.00 40.67 4.61
759 1152 4.893424 TTTGCTATAAATTGGACGCTCC 57.107 40.909 0.00 0.00 36.96 4.70
774 1167 2.069776 CTCCCCTCCTGCTTGTGAA 58.930 57.895 0.00 0.00 0.00 3.18
775 1168 0.035630 CTCCCCTCCTGCTTGTGAAG 60.036 60.000 0.00 0.00 0.00 3.02
776 1169 0.768221 TCCCCTCCTGCTTGTGAAGT 60.768 55.000 0.00 0.00 0.00 3.01
777 1170 0.111253 CCCCTCCTGCTTGTGAAGTT 59.889 55.000 0.00 0.00 0.00 2.66
778 1171 1.242076 CCCTCCTGCTTGTGAAGTTG 58.758 55.000 0.00 0.00 0.00 3.16
779 1172 1.477558 CCCTCCTGCTTGTGAAGTTGT 60.478 52.381 0.00 0.00 0.00 3.32
780 1173 1.605710 CCTCCTGCTTGTGAAGTTGTG 59.394 52.381 0.00 0.00 0.00 3.33
781 1174 2.564771 CTCCTGCTTGTGAAGTTGTGA 58.435 47.619 0.00 0.00 0.00 3.58
822 1215 1.531578 GAAGGCTCAACGTTCTTCCAC 59.468 52.381 13.70 4.38 39.54 4.02
823 1216 0.250338 AGGCTCAACGTTCTTCCACC 60.250 55.000 0.00 0.00 0.00 4.61
824 1217 0.250338 GGCTCAACGTTCTTCCACCT 60.250 55.000 0.00 0.00 0.00 4.00
825 1218 1.149148 GCTCAACGTTCTTCCACCTC 58.851 55.000 0.00 0.00 0.00 3.85
826 1219 1.797025 CTCAACGTTCTTCCACCTCC 58.203 55.000 0.00 0.00 0.00 4.30
827 1220 1.070134 CTCAACGTTCTTCCACCTCCA 59.930 52.381 0.00 0.00 0.00 3.86
887 1280 3.948196 TGCTTGCTTGCATTGTTTTTC 57.052 38.095 0.00 0.00 38.12 2.29
888 1281 3.533547 TGCTTGCTTGCATTGTTTTTCT 58.466 36.364 0.00 0.00 38.12 2.52
889 1282 3.940221 TGCTTGCTTGCATTGTTTTTCTT 59.060 34.783 0.00 0.00 38.12 2.52
890 1283 4.395542 TGCTTGCTTGCATTGTTTTTCTTT 59.604 33.333 0.00 0.00 38.12 2.52
891 1284 4.965762 GCTTGCTTGCATTGTTTTTCTTTC 59.034 37.500 0.00 0.00 0.00 2.62
994 1388 2.678471 AAATACGTACGTGGGGAAGG 57.322 50.000 30.25 0.00 0.00 3.46
1062 1456 0.464452 GGGCGTACATAGCTTGGTCT 59.536 55.000 0.00 0.00 34.52 3.85
1121 1515 2.029844 GTGGCCTTCTCGTGCTGAC 61.030 63.158 3.32 0.00 0.00 3.51
1278 1672 4.367023 GTGCGCACTGGGGACGTA 62.367 66.667 32.55 0.00 0.00 3.57
1313 1707 0.232303 GACAACGACAACGAAGGCAG 59.768 55.000 0.00 0.00 42.66 4.85
1770 3067 4.477975 CGCGTCCAGGTCTCGTCC 62.478 72.222 0.00 0.00 0.00 4.79
1990 3293 2.124983 CCTGCTGCGTACATGGCT 60.125 61.111 0.00 0.00 0.00 4.75
2209 3715 3.499737 GCTTGTATGCTGCGGCGT 61.500 61.111 17.99 17.99 42.25 5.68
2249 3755 4.202080 TGTGATTATACGCTGTACCTGTCC 60.202 45.833 0.00 0.00 0.00 4.02
2254 3760 6.528537 TTATACGCTGTACCTGTCCTTTTA 57.471 37.500 0.00 0.00 0.00 1.52
2257 3763 4.648651 ACGCTGTACCTGTCCTTTTATTT 58.351 39.130 0.00 0.00 0.00 1.40
2260 3766 5.411669 CGCTGTACCTGTCCTTTTATTTCTT 59.588 40.000 0.00 0.00 0.00 2.52
2261 3767 6.402226 CGCTGTACCTGTCCTTTTATTTCTTC 60.402 42.308 0.00 0.00 0.00 2.87
2287 3793 8.618702 TCCGAATAAAAGTGTTAAATACCACA 57.381 30.769 0.00 0.00 0.00 4.17
2290 3796 7.483691 CGAATAAAAGTGTTAAATACCACAGCC 59.516 37.037 0.00 0.00 0.00 4.85
2299 3805 2.048444 ATACCACAGCCTCTGCATTG 57.952 50.000 0.00 0.00 41.13 2.82
2300 3806 0.035152 TACCACAGCCTCTGCATTGG 60.035 55.000 0.00 0.00 43.75 3.16
2317 4166 5.833406 CATTGGTTGATGCATGTAACCTA 57.167 39.130 28.86 24.88 43.28 3.08
2320 4169 2.031683 GGTTGATGCATGTAACCTACGC 59.968 50.000 24.90 7.58 40.47 4.42
2321 4170 2.675844 GTTGATGCATGTAACCTACGCA 59.324 45.455 2.46 0.00 36.95 5.24
2323 4172 4.329462 TGATGCATGTAACCTACGCATA 57.671 40.909 2.46 0.00 43.06 3.14
2325 4174 2.479837 TGCATGTAACCTACGCATAGC 58.520 47.619 0.00 0.00 0.00 2.97
2326 4175 2.102420 TGCATGTAACCTACGCATAGCT 59.898 45.455 0.00 0.00 0.00 3.32
2328 4177 3.717707 CATGTAACCTACGCATAGCTGT 58.282 45.455 0.00 0.00 0.00 4.40
2329 4178 4.794981 GCATGTAACCTACGCATAGCTGTA 60.795 45.833 0.00 0.00 0.00 2.74
2330 4179 4.297299 TGTAACCTACGCATAGCTGTAC 57.703 45.455 0.00 0.00 0.00 2.90
2331 4180 3.695556 TGTAACCTACGCATAGCTGTACA 59.304 43.478 0.00 0.00 0.00 2.90
2332 4181 2.865343 ACCTACGCATAGCTGTACAC 57.135 50.000 0.00 0.00 0.00 2.90
2333 4182 2.097036 ACCTACGCATAGCTGTACACA 58.903 47.619 0.00 0.00 0.00 3.72
2334 4183 2.099263 ACCTACGCATAGCTGTACACAG 59.901 50.000 4.96 4.96 46.40 3.66
2405 4270 0.179121 TACGCATAGCTGTGTTCCCG 60.179 55.000 12.41 9.22 43.48 5.14
2412 4277 3.345808 CTGTGTTCCCGTGCGGTG 61.346 66.667 9.90 1.68 0.00 4.94
2494 4366 1.150827 CTCTGTGATGTTCGCTGCAA 58.849 50.000 0.00 0.00 0.00 4.08
2533 4405 3.983344 GCTACAAAGTTTGCAGTGATTGG 59.017 43.478 15.59 0.00 0.00 3.16
2534 4406 4.261572 GCTACAAAGTTTGCAGTGATTGGA 60.262 41.667 15.59 0.85 0.00 3.53
2535 4407 4.045636 ACAAAGTTTGCAGTGATTGGAC 57.954 40.909 15.59 0.00 0.00 4.02
2536 4408 3.446873 ACAAAGTTTGCAGTGATTGGACA 59.553 39.130 15.59 0.00 0.00 4.02
2537 4409 3.996150 AAGTTTGCAGTGATTGGACAG 57.004 42.857 0.00 0.00 0.00 3.51
2538 4410 2.233271 AGTTTGCAGTGATTGGACAGG 58.767 47.619 0.00 0.00 0.00 4.00
2539 4411 1.270550 GTTTGCAGTGATTGGACAGGG 59.729 52.381 0.00 0.00 0.00 4.45
2540 4412 0.478072 TTGCAGTGATTGGACAGGGT 59.522 50.000 0.00 0.00 0.00 4.34
2541 4413 0.250858 TGCAGTGATTGGACAGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
2542 4414 1.589716 GCAGTGATTGGACAGGGTGC 61.590 60.000 0.00 0.00 0.00 5.01
2543 4415 0.037303 CAGTGATTGGACAGGGTGCT 59.963 55.000 0.00 0.00 0.00 4.40
2544 4416 1.278985 CAGTGATTGGACAGGGTGCTA 59.721 52.381 0.00 0.00 0.00 3.49
2545 4417 1.279271 AGTGATTGGACAGGGTGCTAC 59.721 52.381 0.00 0.00 0.00 3.58
2546 4418 0.249120 TGATTGGACAGGGTGCTACG 59.751 55.000 0.00 0.00 0.00 3.51
2547 4419 0.249398 GATTGGACAGGGTGCTACGT 59.751 55.000 0.00 0.00 0.00 3.57
2550 4422 0.540133 TGGACAGGGTGCTACGTACA 60.540 55.000 0.00 0.00 0.00 2.90
2551 4423 0.604578 GGACAGGGTGCTACGTACAA 59.395 55.000 0.00 0.00 0.00 2.41
2552 4424 1.403780 GGACAGGGTGCTACGTACAAG 60.404 57.143 0.00 0.00 0.00 3.16
2553 4425 1.271656 GACAGGGTGCTACGTACAAGT 59.728 52.381 0.00 0.00 0.00 3.16
2563 4435 2.922740 ACGTACAAGTGTTGGTGGAT 57.077 45.000 0.00 0.00 34.12 3.41
2566 4438 3.259064 CGTACAAGTGTTGGTGGATAGG 58.741 50.000 0.00 0.00 34.12 2.57
2574 4446 0.828022 TTGGTGGATAGGGTGCTACG 59.172 55.000 0.00 0.00 0.00 3.51
2575 4447 1.069258 GGTGGATAGGGTGCTACGC 59.931 63.158 0.00 0.00 0.00 4.42
2580 4452 1.033574 GATAGGGTGCTACGCTGACT 58.966 55.000 13.50 2.21 41.73 3.41
2587 4459 1.801913 GCTACGCTGACTGGTGTCG 60.802 63.158 0.00 0.00 45.70 4.35
2593 4465 3.425578 CTGACTGGTGTCGGTGATC 57.574 57.895 0.00 0.00 45.70 2.92
2595 4467 1.000843 CTGACTGGTGTCGGTGATCAA 59.999 52.381 0.00 0.00 45.70 2.57
2597 4469 2.038426 TGACTGGTGTCGGTGATCAATT 59.962 45.455 0.00 0.00 45.70 2.32
2598 4470 3.074412 GACTGGTGTCGGTGATCAATTT 58.926 45.455 0.00 0.00 33.15 1.82
2599 4471 2.813754 ACTGGTGTCGGTGATCAATTTG 59.186 45.455 0.00 0.00 0.00 2.32
2600 4472 1.539388 TGGTGTCGGTGATCAATTTGC 59.461 47.619 0.00 0.00 0.00 3.68
2601 4473 1.539388 GGTGTCGGTGATCAATTTGCA 59.461 47.619 0.00 0.00 0.00 4.08
2602 4474 2.584791 GTGTCGGTGATCAATTTGCAC 58.415 47.619 0.00 0.00 0.00 4.57
2603 4475 1.539388 TGTCGGTGATCAATTTGCACC 59.461 47.619 13.32 13.32 46.60 5.01
2607 4479 3.070429 GGTGATCAATTTGCACCGATC 57.930 47.619 0.00 0.00 42.20 3.69
2608 4480 2.684881 GGTGATCAATTTGCACCGATCT 59.315 45.455 0.00 0.00 42.20 2.75
2609 4481 3.129287 GGTGATCAATTTGCACCGATCTT 59.871 43.478 0.00 0.00 42.20 2.40
2610 4482 4.335315 GGTGATCAATTTGCACCGATCTTA 59.665 41.667 0.00 0.00 42.20 2.10
2611 4483 5.266242 GTGATCAATTTGCACCGATCTTAC 58.734 41.667 0.00 3.49 36.16 2.34
2612 4484 4.940654 TGATCAATTTGCACCGATCTTACA 59.059 37.500 12.47 0.00 36.16 2.41
2614 4486 3.689161 TCAATTTGCACCGATCTTACAGG 59.311 43.478 0.00 0.00 0.00 4.00
2616 4488 2.851263 TTGCACCGATCTTACAGGTT 57.149 45.000 0.00 0.00 35.85 3.50
2617 4489 3.965379 TTGCACCGATCTTACAGGTTA 57.035 42.857 0.00 0.00 35.85 2.85
2618 4490 3.965379 TGCACCGATCTTACAGGTTAA 57.035 42.857 0.00 0.00 35.85 2.01
2619 4491 4.274602 TGCACCGATCTTACAGGTTAAA 57.725 40.909 0.00 0.00 35.85 1.52
2620 4492 4.250464 TGCACCGATCTTACAGGTTAAAG 58.750 43.478 0.00 0.00 35.85 1.85
2621 4493 4.251268 GCACCGATCTTACAGGTTAAAGT 58.749 43.478 0.00 0.00 35.85 2.66
2622 4494 4.694037 GCACCGATCTTACAGGTTAAAGTT 59.306 41.667 0.00 0.00 35.85 2.66
2623 4495 5.870978 GCACCGATCTTACAGGTTAAAGTTA 59.129 40.000 0.00 0.00 35.85 2.24
2624 4496 6.183360 GCACCGATCTTACAGGTTAAAGTTAC 60.183 42.308 0.00 0.00 35.85 2.50
2625 4497 6.312180 CACCGATCTTACAGGTTAAAGTTACC 59.688 42.308 0.00 0.00 35.85 2.85
2626 4498 5.517770 CCGATCTTACAGGTTAAAGTTACCG 59.482 44.000 0.00 0.00 40.69 4.02
2627 4499 6.095377 CGATCTTACAGGTTAAAGTTACCGT 58.905 40.000 0.00 0.00 40.69 4.83
2628 4500 6.034256 CGATCTTACAGGTTAAAGTTACCGTG 59.966 42.308 0.00 0.00 40.69 4.94
2629 4501 4.990426 TCTTACAGGTTAAAGTTACCGTGC 59.010 41.667 0.00 0.00 40.69 5.34
2633 4505 5.367302 ACAGGTTAAAGTTACCGTGCTTTA 58.633 37.500 6.21 6.21 40.69 1.85
2634 4506 5.237127 ACAGGTTAAAGTTACCGTGCTTTAC 59.763 40.000 8.65 5.98 40.69 2.01
2635 4507 5.467735 CAGGTTAAAGTTACCGTGCTTTACT 59.532 40.000 8.65 3.80 40.69 2.24
2636 4508 6.017687 CAGGTTAAAGTTACCGTGCTTTACTT 60.018 38.462 8.65 0.00 40.69 2.24
2637 4509 6.543465 AGGTTAAAGTTACCGTGCTTTACTTT 59.457 34.615 0.00 0.00 40.69 2.66
2638 4510 6.634035 GGTTAAAGTTACCGTGCTTTACTTTG 59.366 38.462 0.00 0.00 38.89 2.77
2639 4511 5.823209 AAAGTTACCGTGCTTTACTTTGT 57.177 34.783 0.00 0.00 37.57 2.83
2640 4512 4.806342 AGTTACCGTGCTTTACTTTGTG 57.194 40.909 0.00 0.00 0.00 3.33
2641 4513 4.193865 AGTTACCGTGCTTTACTTTGTGT 58.806 39.130 0.00 0.00 0.00 3.72
2642 4514 4.034742 AGTTACCGTGCTTTACTTTGTGTG 59.965 41.667 0.00 0.00 0.00 3.82
2643 4515 1.673920 ACCGTGCTTTACTTTGTGTGG 59.326 47.619 0.00 0.00 0.00 4.17
2644 4516 1.599419 CCGTGCTTTACTTTGTGTGGC 60.599 52.381 0.00 0.00 0.00 5.01
2645 4517 1.064803 CGTGCTTTACTTTGTGTGGCA 59.935 47.619 0.00 0.00 0.00 4.92
2647 4519 1.066908 TGCTTTACTTTGTGTGGCAGC 59.933 47.619 0.00 0.00 0.00 5.25
2649 4521 2.552315 GCTTTACTTTGTGTGGCAGCTA 59.448 45.455 0.00 0.00 0.00 3.32
2650 4522 3.609409 GCTTTACTTTGTGTGGCAGCTAC 60.609 47.826 0.99 0.99 0.00 3.58
2651 4523 2.178912 TACTTTGTGTGGCAGCTACC 57.821 50.000 6.42 0.00 0.00 3.18
2652 4524 0.474184 ACTTTGTGTGGCAGCTACCT 59.526 50.000 6.42 0.00 0.00 3.08
2653 4525 1.697432 ACTTTGTGTGGCAGCTACCTA 59.303 47.619 6.42 0.00 0.00 3.08
2654 4526 2.289694 ACTTTGTGTGGCAGCTACCTAG 60.290 50.000 6.42 1.35 0.00 3.02
2722 8337 2.767505 CACACCCTGTGTAAACCTCTC 58.232 52.381 0.00 0.00 45.65 3.20
2740 8355 7.396540 ACCTCTCAAATGAATATTGACCAAC 57.603 36.000 0.00 0.00 33.47 3.77
2862 8477 4.539870 CACAACAAATCACCTGCTAACTG 58.460 43.478 0.00 0.00 0.00 3.16
2863 8478 3.569701 ACAACAAATCACCTGCTAACTGG 59.430 43.478 0.00 0.00 40.61 4.00
2864 8479 3.788227 ACAAATCACCTGCTAACTGGA 57.212 42.857 0.00 0.00 38.25 3.86
2865 8480 4.098914 ACAAATCACCTGCTAACTGGAA 57.901 40.909 0.00 0.00 38.25 3.53
2866 8481 4.074970 ACAAATCACCTGCTAACTGGAAG 58.925 43.478 0.00 0.00 38.25 3.46
2881 8496 3.665190 CTGGAAGTGGAGTTTCTACACC 58.335 50.000 8.30 3.75 45.81 4.16
2882 8497 2.370849 TGGAAGTGGAGTTTCTACACCC 59.629 50.000 8.30 4.88 45.81 4.61
2883 8498 2.638363 GGAAGTGGAGTTTCTACACCCT 59.362 50.000 8.30 0.00 45.81 4.34
2884 8499 3.557264 GGAAGTGGAGTTTCTACACCCTG 60.557 52.174 8.30 0.00 45.81 4.45
2885 8500 1.978580 AGTGGAGTTTCTACACCCTGG 59.021 52.381 8.30 0.00 45.81 4.45
2886 8501 1.975680 GTGGAGTTTCTACACCCTGGA 59.024 52.381 0.00 0.00 39.27 3.86
2887 8502 2.028020 GTGGAGTTTCTACACCCTGGAG 60.028 54.545 0.00 0.00 39.27 3.86
2888 8503 1.066071 GGAGTTTCTACACCCTGGAGC 60.066 57.143 0.00 0.00 0.00 4.70
2889 8504 1.623811 GAGTTTCTACACCCTGGAGCA 59.376 52.381 0.00 0.00 0.00 4.26
2890 8505 2.038557 GAGTTTCTACACCCTGGAGCAA 59.961 50.000 0.00 0.00 0.00 3.91
2891 8506 2.441750 AGTTTCTACACCCTGGAGCAAA 59.558 45.455 0.00 0.00 0.00 3.68
2892 8507 3.074538 AGTTTCTACACCCTGGAGCAAAT 59.925 43.478 0.00 0.00 0.00 2.32
2893 8508 2.787473 TCTACACCCTGGAGCAAATG 57.213 50.000 0.00 0.00 0.00 2.32
2894 8509 1.098050 CTACACCCTGGAGCAAATGC 58.902 55.000 0.00 0.00 42.49 3.56
2905 8520 2.644887 GCAAATGCTCCTGGTGTGA 58.355 52.632 0.00 0.00 38.21 3.58
2906 8521 0.961019 GCAAATGCTCCTGGTGTGAA 59.039 50.000 0.00 0.00 38.21 3.18
2907 8522 1.336240 GCAAATGCTCCTGGTGTGAAC 60.336 52.381 0.00 0.00 38.21 3.18
2908 8523 1.955778 CAAATGCTCCTGGTGTGAACA 59.044 47.619 0.00 0.00 0.00 3.18
2909 8524 1.901591 AATGCTCCTGGTGTGAACAG 58.098 50.000 0.00 0.00 35.74 3.16
2910 8525 0.767375 ATGCTCCTGGTGTGAACAGT 59.233 50.000 0.00 0.00 34.16 3.55
2911 8526 1.419381 TGCTCCTGGTGTGAACAGTA 58.581 50.000 0.00 0.00 34.16 2.74
2912 8527 1.765904 TGCTCCTGGTGTGAACAGTAA 59.234 47.619 0.00 0.00 34.16 2.24
2913 8528 2.171659 TGCTCCTGGTGTGAACAGTAAA 59.828 45.455 0.00 0.00 34.16 2.01
2914 8529 3.211045 GCTCCTGGTGTGAACAGTAAAA 58.789 45.455 0.00 0.00 34.16 1.52
2915 8530 3.821033 GCTCCTGGTGTGAACAGTAAAAT 59.179 43.478 0.00 0.00 34.16 1.82
2916 8531 5.001232 GCTCCTGGTGTGAACAGTAAAATA 58.999 41.667 0.00 0.00 34.16 1.40
2917 8532 5.472137 GCTCCTGGTGTGAACAGTAAAATAA 59.528 40.000 0.00 0.00 34.16 1.40
2918 8533 6.016610 GCTCCTGGTGTGAACAGTAAAATAAA 60.017 38.462 0.00 0.00 34.16 1.40
2919 8534 7.469456 GCTCCTGGTGTGAACAGTAAAATAAAA 60.469 37.037 0.00 0.00 34.16 1.52
2920 8535 8.294954 TCCTGGTGTGAACAGTAAAATAAAAA 57.705 30.769 0.00 0.00 34.16 1.94
2966 8581 7.706281 TTTTTGTGGCATACTTGTACAAATG 57.294 32.000 10.03 12.17 39.48 2.32
2967 8582 6.398234 TTTGTGGCATACTTGTACAAATGT 57.602 33.333 17.46 12.19 37.24 2.71
2968 8583 6.398234 TTGTGGCATACTTGTACAAATGTT 57.602 33.333 17.46 3.84 32.75 2.71
2969 8584 6.398234 TGTGGCATACTTGTACAAATGTTT 57.602 33.333 17.46 4.28 0.00 2.83
2970 8585 6.212235 TGTGGCATACTTGTACAAATGTTTG 58.788 36.000 17.46 14.43 43.62 2.93
2983 8598 5.441700 CAAATGTTTGTTGTGCACGTAAA 57.558 34.783 13.13 10.29 33.59 2.01
2984 8599 5.847715 CAAATGTTTGTTGTGCACGTAAAA 58.152 33.333 13.13 9.26 33.59 1.52
2985 8600 6.473521 CAAATGTTTGTTGTGCACGTAAAAT 58.526 32.000 13.13 1.46 33.59 1.82
2986 8601 6.654793 AATGTTTGTTGTGCACGTAAAATT 57.345 29.167 13.13 7.37 0.00 1.82
2987 8602 6.654793 ATGTTTGTTGTGCACGTAAAATTT 57.345 29.167 13.13 1.94 0.00 1.82
2988 8603 6.083925 TGTTTGTTGTGCACGTAAAATTTC 57.916 33.333 13.13 2.75 0.00 2.17
2989 8604 5.633601 TGTTTGTTGTGCACGTAAAATTTCA 59.366 32.000 13.13 5.09 0.00 2.69
2990 8605 6.311445 TGTTTGTTGTGCACGTAAAATTTCAT 59.689 30.769 13.13 0.00 0.00 2.57
2991 8606 6.503616 TTGTTGTGCACGTAAAATTTCATC 57.496 33.333 13.13 0.00 0.00 2.92
2992 8607 4.672862 TGTTGTGCACGTAAAATTTCATCG 59.327 37.500 13.13 0.00 0.00 3.84
2993 8608 3.230355 TGTGCACGTAAAATTTCATCGC 58.770 40.909 13.13 0.00 0.00 4.58
2994 8609 2.272700 GTGCACGTAAAATTTCATCGCG 59.727 45.455 0.00 0.00 0.00 5.87
2995 8610 2.157863 TGCACGTAAAATTTCATCGCGA 59.842 40.909 13.09 13.09 0.00 5.87
2996 8611 3.157510 GCACGTAAAATTTCATCGCGAA 58.842 40.909 15.24 0.00 0.00 4.70
3006 8621 3.403613 TTCATCGCGAAATCACATTGG 57.596 42.857 15.24 0.00 0.00 3.16
3007 8622 2.355197 TCATCGCGAAATCACATTGGT 58.645 42.857 15.24 0.00 0.00 3.67
3008 8623 2.095692 TCATCGCGAAATCACATTGGTG 59.904 45.455 15.24 1.60 46.66 4.17
3019 8634 2.452600 ACATTGGTGAAAGGTGTGGT 57.547 45.000 0.00 0.00 29.94 4.16
3020 8635 3.586470 ACATTGGTGAAAGGTGTGGTA 57.414 42.857 0.00 0.00 29.94 3.25
3021 8636 3.904717 ACATTGGTGAAAGGTGTGGTAA 58.095 40.909 0.00 0.00 29.94 2.85
3022 8637 4.282496 ACATTGGTGAAAGGTGTGGTAAA 58.718 39.130 0.00 0.00 29.94 2.01
3023 8638 4.712337 ACATTGGTGAAAGGTGTGGTAAAA 59.288 37.500 0.00 0.00 29.94 1.52
3024 8639 5.187967 ACATTGGTGAAAGGTGTGGTAAAAA 59.812 36.000 0.00 0.00 29.94 1.94
3048 8663 7.769272 AAAAACAAAATCGATGCTCTGAAAA 57.231 28.000 0.00 0.00 0.00 2.29
3049 8664 7.951530 AAAACAAAATCGATGCTCTGAAAAT 57.048 28.000 0.00 0.00 0.00 1.82
3050 8665 6.939551 AACAAAATCGATGCTCTGAAAATG 57.060 33.333 0.00 0.00 0.00 2.32
3051 8666 6.017400 ACAAAATCGATGCTCTGAAAATGT 57.983 33.333 0.00 0.00 0.00 2.71
3052 8667 6.449698 ACAAAATCGATGCTCTGAAAATGTT 58.550 32.000 0.00 0.00 0.00 2.71
3053 8668 7.592938 ACAAAATCGATGCTCTGAAAATGTTA 58.407 30.769 0.00 0.00 0.00 2.41
3054 8669 7.538678 ACAAAATCGATGCTCTGAAAATGTTAC 59.461 33.333 0.00 0.00 0.00 2.50
3055 8670 6.992063 AATCGATGCTCTGAAAATGTTACT 57.008 33.333 0.00 0.00 0.00 2.24
3056 8671 6.992063 ATCGATGCTCTGAAAATGTTACTT 57.008 33.333 0.00 0.00 0.00 2.24
3057 8672 8.492673 AATCGATGCTCTGAAAATGTTACTTA 57.507 30.769 0.00 0.00 0.00 2.24
3058 8673 7.290857 TCGATGCTCTGAAAATGTTACTTAC 57.709 36.000 0.00 0.00 0.00 2.34
3059 8674 6.871492 TCGATGCTCTGAAAATGTTACTTACA 59.129 34.615 0.00 0.00 41.97 2.41
3060 8675 7.386573 TCGATGCTCTGAAAATGTTACTTACAA 59.613 33.333 0.00 0.00 40.89 2.41
3061 8676 8.015087 CGATGCTCTGAAAATGTTACTTACAAA 58.985 33.333 0.00 0.00 40.89 2.83
3062 8677 9.677567 GATGCTCTGAAAATGTTACTTACAAAA 57.322 29.630 0.00 0.00 40.89 2.44
3063 8678 9.683069 ATGCTCTGAAAATGTTACTTACAAAAG 57.317 29.630 0.00 0.00 40.89 2.27
3064 8679 7.647715 TGCTCTGAAAATGTTACTTACAAAAGC 59.352 33.333 0.00 0.00 40.89 3.51
3065 8680 7.647715 GCTCTGAAAATGTTACTTACAAAAGCA 59.352 33.333 0.00 0.00 40.89 3.91
3066 8681 9.683069 CTCTGAAAATGTTACTTACAAAAGCAT 57.317 29.630 0.00 0.00 40.89 3.79
3084 8699 6.780706 AAGCATTTTGAAGCTCTGATTTTG 57.219 33.333 0.00 0.00 40.90 2.44
3085 8700 5.850614 AGCATTTTGAAGCTCTGATTTTGT 58.149 33.333 0.00 0.00 36.00 2.83
3086 8701 6.285990 AGCATTTTGAAGCTCTGATTTTGTT 58.714 32.000 0.00 0.00 36.00 2.83
3087 8702 6.764560 AGCATTTTGAAGCTCTGATTTTGTTT 59.235 30.769 0.00 0.00 36.00 2.83
3088 8703 7.281549 AGCATTTTGAAGCTCTGATTTTGTTTT 59.718 29.630 0.00 0.00 36.00 2.43
3089 8704 7.911727 GCATTTTGAAGCTCTGATTTTGTTTTT 59.088 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.921637 GGTAGTATCGTACTTAGTATCACTAGT 57.078 37.037 0.00 0.00 40.14 2.57
3 4 9.920133 TGGTAGTATCGTACTTAGTATCACTAG 57.080 37.037 0.00 0.00 40.14 2.57
5 6 9.790344 AATGGTAGTATCGTACTTAGTATCACT 57.210 33.333 0.00 0.31 40.14 3.41
11 12 8.624776 GGTTGTAATGGTAGTATCGTACTTAGT 58.375 37.037 3.56 0.00 40.14 2.24
12 13 8.623903 TGGTTGTAATGGTAGTATCGTACTTAG 58.376 37.037 3.56 0.00 40.14 2.18
13 14 8.518430 TGGTTGTAATGGTAGTATCGTACTTA 57.482 34.615 3.56 0.00 40.14 2.24
14 15 7.408756 TGGTTGTAATGGTAGTATCGTACTT 57.591 36.000 3.56 0.00 40.14 2.24
15 16 6.460676 GCTGGTTGTAATGGTAGTATCGTACT 60.461 42.308 0.00 3.71 42.68 2.73
16 17 5.689068 GCTGGTTGTAATGGTAGTATCGTAC 59.311 44.000 0.00 0.00 0.00 3.67
17 18 5.221303 GGCTGGTTGTAATGGTAGTATCGTA 60.221 44.000 0.00 0.00 0.00 3.43
18 19 4.442472 GGCTGGTTGTAATGGTAGTATCGT 60.442 45.833 0.00 0.00 0.00 3.73
19 20 4.056050 GGCTGGTTGTAATGGTAGTATCG 58.944 47.826 0.00 0.00 0.00 2.92
20 21 5.163343 TGAGGCTGGTTGTAATGGTAGTATC 60.163 44.000 0.00 0.00 0.00 2.24
21 22 4.719773 TGAGGCTGGTTGTAATGGTAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
22 23 4.098155 TGAGGCTGGTTGTAATGGTAGTA 58.902 43.478 0.00 0.00 0.00 1.82
23 24 2.910319 TGAGGCTGGTTGTAATGGTAGT 59.090 45.455 0.00 0.00 0.00 2.73
24 25 3.627395 TGAGGCTGGTTGTAATGGTAG 57.373 47.619 0.00 0.00 0.00 3.18
25 26 3.681593 GTTGAGGCTGGTTGTAATGGTA 58.318 45.455 0.00 0.00 0.00 3.25
26 27 2.514803 GTTGAGGCTGGTTGTAATGGT 58.485 47.619 0.00 0.00 0.00 3.55
27 28 1.468520 CGTTGAGGCTGGTTGTAATGG 59.531 52.381 0.00 0.00 0.00 3.16
28 29 2.422597 TCGTTGAGGCTGGTTGTAATG 58.577 47.619 0.00 0.00 0.00 1.90
29 30 2.851263 TCGTTGAGGCTGGTTGTAAT 57.149 45.000 0.00 0.00 0.00 1.89
30 31 2.103432 TCTTCGTTGAGGCTGGTTGTAA 59.897 45.455 0.00 0.00 0.00 2.41
31 32 1.689813 TCTTCGTTGAGGCTGGTTGTA 59.310 47.619 0.00 0.00 0.00 2.41
32 33 0.468226 TCTTCGTTGAGGCTGGTTGT 59.532 50.000 0.00 0.00 0.00 3.32
33 34 0.868406 GTCTTCGTTGAGGCTGGTTG 59.132 55.000 0.00 0.00 0.00 3.77
34 35 0.468226 TGTCTTCGTTGAGGCTGGTT 59.532 50.000 0.00 0.00 0.00 3.67
35 36 0.687354 ATGTCTTCGTTGAGGCTGGT 59.313 50.000 0.00 0.00 0.00 4.00
36 37 1.081892 CATGTCTTCGTTGAGGCTGG 58.918 55.000 0.00 0.00 0.00 4.85
37 38 2.084610 TCATGTCTTCGTTGAGGCTG 57.915 50.000 0.00 0.00 0.00 4.85
38 39 2.625737 CATCATGTCTTCGTTGAGGCT 58.374 47.619 0.00 0.00 0.00 4.58
39 40 1.063174 GCATCATGTCTTCGTTGAGGC 59.937 52.381 0.00 0.00 0.00 4.70
40 41 1.325640 CGCATCATGTCTTCGTTGAGG 59.674 52.381 0.00 0.00 0.00 3.86
41 42 1.995484 ACGCATCATGTCTTCGTTGAG 59.005 47.619 0.00 0.00 0.00 3.02
60 61 4.437930 GGCATTGCTCTGTGTTAATCTCAC 60.438 45.833 8.82 0.00 36.48 3.51
178 179 9.368416 TCAGGGTAGAGTATTATATATGGATGC 57.632 37.037 0.00 0.00 0.00 3.91
200 201 2.566833 TGTTGAGTGTCCCATTCAGG 57.433 50.000 0.00 0.00 32.11 3.86
209 210 0.792640 CGCTCCACATGTTGAGTGTC 59.207 55.000 25.04 11.15 35.04 3.67
214 215 2.030412 ACGCGCTCCACATGTTGA 59.970 55.556 5.73 0.00 0.00 3.18
219 220 1.396607 TATACCCACGCGCTCCACAT 61.397 55.000 5.73 0.00 0.00 3.21
221 222 0.599558 TATATACCCACGCGCTCCAC 59.400 55.000 5.73 0.00 0.00 4.02
240 241 9.798994 CGACTATTTGGTTTACTTGTCTACTAT 57.201 33.333 0.00 0.00 0.00 2.12
241 242 8.796475 ACGACTATTTGGTTTACTTGTCTACTA 58.204 33.333 0.00 0.00 0.00 1.82
242 243 7.664758 ACGACTATTTGGTTTACTTGTCTACT 58.335 34.615 0.00 0.00 0.00 2.57
243 244 7.880059 ACGACTATTTGGTTTACTTGTCTAC 57.120 36.000 0.00 0.00 0.00 2.59
254 255 5.941948 CTGAAAGGAACGACTATTTGGTT 57.058 39.130 0.00 0.00 0.00 3.67
295 296 2.478894 CGTGTGGTTAGCGATGTTTCTT 59.521 45.455 0.00 0.00 0.00 2.52
318 319 1.300963 CACACATGTCCTGAGGGGG 59.699 63.158 0.00 0.00 35.33 5.40
351 352 7.078011 AGCAAGATTTATCTCTTTCCGTTTC 57.922 36.000 0.00 0.00 35.76 2.78
355 356 7.778470 ACTTAGCAAGATTTATCTCTTTCCG 57.222 36.000 3.37 0.00 35.76 4.30
376 377 3.953612 TCTCCAACAAGCAATGTCAACTT 59.046 39.130 0.00 0.00 42.99 2.66
377 378 3.316308 GTCTCCAACAAGCAATGTCAACT 59.684 43.478 0.00 0.00 42.99 3.16
378 379 3.066621 TGTCTCCAACAAGCAATGTCAAC 59.933 43.478 0.00 0.00 42.99 3.18
403 404 0.298707 CGCTCGATCCAATCAACGTG 59.701 55.000 0.00 0.00 0.00 4.49
412 420 4.546570 CAGATTTATACACGCTCGATCCA 58.453 43.478 0.00 0.00 0.00 3.41
449 457 6.596309 TGATGTAAGTGATAGCATAGAGGG 57.404 41.667 0.00 0.00 0.00 4.30
475 483 9.693739 TGCCCAATTATTTTTCAACTCTATCTA 57.306 29.630 0.00 0.00 0.00 1.98
485 493 8.688747 AGATTGTTTTGCCCAATTATTTTTCA 57.311 26.923 0.00 0.00 32.84 2.69
491 499 6.211184 TCTGTGAGATTGTTTTGCCCAATTAT 59.789 34.615 0.00 0.00 32.84 1.28
492 500 5.538053 TCTGTGAGATTGTTTTGCCCAATTA 59.462 36.000 0.00 0.00 32.84 1.40
493 501 4.344679 TCTGTGAGATTGTTTTGCCCAATT 59.655 37.500 0.00 0.00 32.84 2.32
494 502 3.896888 TCTGTGAGATTGTTTTGCCCAAT 59.103 39.130 0.00 0.00 35.30 3.16
495 503 3.295093 TCTGTGAGATTGTTTTGCCCAA 58.705 40.909 0.00 0.00 0.00 4.12
530 669 7.780271 GGTGGGTCCTAAAATATCAGAAAATCT 59.220 37.037 0.00 0.00 0.00 2.40
579 718 8.451687 TTTCTGCAACAAATAATTTGAGATCG 57.548 30.769 0.00 0.00 43.26 3.69
610 749 9.593134 CTACGTTAGTCCGTTAGTCCTATATAT 57.407 37.037 0.00 0.00 42.00 0.86
645 784 1.208165 AAGGGTGGCCAAGAGGTAGG 61.208 60.000 7.24 0.00 37.19 3.18
646 785 0.035056 CAAGGGTGGCCAAGAGGTAG 60.035 60.000 7.24 0.00 37.19 3.18
647 786 0.474854 TCAAGGGTGGCCAAGAGGTA 60.475 55.000 7.24 0.00 37.19 3.08
648 787 1.774217 TCAAGGGTGGCCAAGAGGT 60.774 57.895 7.24 0.00 37.19 3.85
649 788 1.001641 CTCAAGGGTGGCCAAGAGG 60.002 63.158 7.24 0.00 38.23 3.69
650 789 0.035630 CTCTCAAGGGTGGCCAAGAG 60.036 60.000 7.24 11.66 0.00 2.85
651 790 1.492133 CCTCTCAAGGGTGGCCAAGA 61.492 60.000 7.24 4.37 39.21 3.02
652 791 1.001641 CCTCTCAAGGGTGGCCAAG 60.002 63.158 7.24 0.00 39.21 3.61
653 792 3.170362 CCTCTCAAGGGTGGCCAA 58.830 61.111 7.24 0.00 39.21 4.52
655 794 2.713531 TTTGCCTCTCAAGGGTGGCC 62.714 60.000 10.27 0.00 44.32 5.36
660 1042 4.009015 GGCTTTGCCTCTCAAGGG 57.991 61.111 0.73 0.00 46.69 3.95
690 1078 6.145696 GCAAGTCGTCACCCAAATATATCTAC 59.854 42.308 0.00 0.00 0.00 2.59
697 1085 1.001068 TCGCAAGTCGTCACCCAAATA 59.999 47.619 0.00 0.00 39.67 1.40
706 1098 0.317938 AGTGTCAGTCGCAAGTCGTC 60.318 55.000 0.00 0.00 39.67 4.20
759 1152 1.242076 CAACTTCACAAGCAGGAGGG 58.758 55.000 0.00 0.00 0.00 4.30
774 1167 5.474578 TCAGAACTGCTTATCTCACAACT 57.525 39.130 0.00 0.00 0.00 3.16
775 1168 5.928839 TCTTCAGAACTGCTTATCTCACAAC 59.071 40.000 0.00 0.00 0.00 3.32
776 1169 5.928839 GTCTTCAGAACTGCTTATCTCACAA 59.071 40.000 0.00 0.00 0.00 3.33
777 1170 5.244851 AGTCTTCAGAACTGCTTATCTCACA 59.755 40.000 0.00 0.00 0.00 3.58
778 1171 5.576384 CAGTCTTCAGAACTGCTTATCTCAC 59.424 44.000 0.00 0.00 0.00 3.51
779 1172 5.478332 TCAGTCTTCAGAACTGCTTATCTCA 59.522 40.000 0.00 0.00 0.00 3.27
780 1173 5.960113 TCAGTCTTCAGAACTGCTTATCTC 58.040 41.667 0.00 0.00 0.00 2.75
781 1174 5.991933 TCAGTCTTCAGAACTGCTTATCT 57.008 39.130 0.00 0.00 0.00 1.98
822 1215 2.284921 TGGAGCTGGAGGTGGAGG 60.285 66.667 0.00 0.00 0.00 4.30
823 1216 3.028921 GCTGGAGCTGGAGGTGGAG 62.029 68.421 0.00 0.00 38.21 3.86
824 1217 3.005539 GCTGGAGCTGGAGGTGGA 61.006 66.667 0.00 0.00 38.21 4.02
900 1293 2.787601 ATGCAATGCAATCATCCGTC 57.212 45.000 13.45 0.00 43.62 4.79
1146 1540 2.902705 ACTTGTTGGAGTCAGCGTAA 57.097 45.000 0.00 0.00 0.00 3.18
1278 1672 0.675083 TGTCGTTGTACCACCACGAT 59.325 50.000 8.57 0.00 35.28 3.73
1313 1707 0.654683 GATGGACAAGTCATCAGCGC 59.345 55.000 0.00 0.00 40.35 5.92
1548 2844 1.674057 CCCTTTCCTGTCGTGCTCT 59.326 57.895 0.00 0.00 0.00 4.09
2012 3315 1.968050 GAAAATCGAGCCCTCCCCGA 61.968 60.000 0.00 0.00 36.72 5.14
2209 3715 1.467342 CACAGACCGAGTGATACACGA 59.533 52.381 0.00 0.00 39.64 4.35
2260 3766 8.938906 GTGGTATTTAACACTTTTATTCGGAGA 58.061 33.333 0.00 0.00 34.84 3.71
2261 3767 8.723311 TGTGGTATTTAACACTTTTATTCGGAG 58.277 33.333 7.25 0.00 38.39 4.63
2287 3793 1.471119 CATCAACCAATGCAGAGGCT 58.529 50.000 7.10 0.00 41.91 4.58
2299 3805 2.031683 GCGTAGGTTACATGCATCAACC 59.968 50.000 23.62 23.62 41.72 3.77
2300 3806 2.675844 TGCGTAGGTTACATGCATCAAC 59.324 45.455 10.86 10.86 0.00 3.18
2329 4178 9.695526 TATAAACAACTTATTCACGTACTGTGT 57.304 29.630 14.51 3.23 39.12 3.72
2331 4180 9.362539 CCTATAAACAACTTATTCACGTACTGT 57.637 33.333 0.00 0.00 32.28 3.55
2332 4181 8.814235 CCCTATAAACAACTTATTCACGTACTG 58.186 37.037 0.00 0.00 32.28 2.74
2333 4182 8.752187 TCCCTATAAACAACTTATTCACGTACT 58.248 33.333 0.00 0.00 32.28 2.73
2334 4183 8.931385 TCCCTATAAACAACTTATTCACGTAC 57.069 34.615 0.00 0.00 32.28 3.67
2353 4204 7.395489 ACCGTGTACGATATAGATTTTCCCTAT 59.605 37.037 5.91 0.00 43.02 2.57
2468 4340 0.997932 GAACATCACAGAGCGCAGAG 59.002 55.000 11.47 0.00 0.00 3.35
2469 4341 0.733909 CGAACATCACAGAGCGCAGA 60.734 55.000 11.47 0.00 0.00 4.26
2482 4354 2.095567 GTCATTGTCTTGCAGCGAACAT 60.096 45.455 0.00 0.00 0.00 2.71
2494 4366 0.250038 AGCGCACAGTGTCATTGTCT 60.250 50.000 11.47 0.00 0.00 3.41
2533 4405 1.271656 ACTTGTACGTAGCACCCTGTC 59.728 52.381 0.00 0.00 0.00 3.51
2534 4406 1.000506 CACTTGTACGTAGCACCCTGT 59.999 52.381 0.00 0.00 0.00 4.00
2535 4407 1.000506 ACACTTGTACGTAGCACCCTG 59.999 52.381 0.00 0.00 0.00 4.45
2536 4408 1.335145 ACACTTGTACGTAGCACCCT 58.665 50.000 0.00 0.00 0.00 4.34
2537 4409 1.796459 CAACACTTGTACGTAGCACCC 59.204 52.381 0.00 0.00 0.00 4.61
2538 4410 1.796459 CCAACACTTGTACGTAGCACC 59.204 52.381 0.00 0.00 0.00 5.01
2539 4411 2.220133 CACCAACACTTGTACGTAGCAC 59.780 50.000 0.00 0.00 0.00 4.40
2540 4412 2.475818 CACCAACACTTGTACGTAGCA 58.524 47.619 0.00 0.00 0.00 3.49
2541 4413 1.796459 CCACCAACACTTGTACGTAGC 59.204 52.381 0.00 0.00 0.00 3.58
2542 4414 3.374220 TCCACCAACACTTGTACGTAG 57.626 47.619 0.00 0.00 0.00 3.51
2543 4415 4.082081 CCTATCCACCAACACTTGTACGTA 60.082 45.833 0.00 0.00 0.00 3.57
2544 4416 2.922740 ATCCACCAACACTTGTACGT 57.077 45.000 0.00 0.00 0.00 3.57
2545 4417 3.259064 CCTATCCACCAACACTTGTACG 58.741 50.000 0.00 0.00 0.00 3.67
2546 4418 3.008704 ACCCTATCCACCAACACTTGTAC 59.991 47.826 0.00 0.00 0.00 2.90
2547 4419 3.008594 CACCCTATCCACCAACACTTGTA 59.991 47.826 0.00 0.00 0.00 2.41
2550 4422 1.271926 GCACCCTATCCACCAACACTT 60.272 52.381 0.00 0.00 0.00 3.16
2551 4423 0.328258 GCACCCTATCCACCAACACT 59.672 55.000 0.00 0.00 0.00 3.55
2552 4424 0.328258 AGCACCCTATCCACCAACAC 59.672 55.000 0.00 0.00 0.00 3.32
2553 4425 1.557832 GTAGCACCCTATCCACCAACA 59.442 52.381 0.00 0.00 0.00 3.33
2574 4446 0.737715 GATCACCGACACCAGTCAGC 60.738 60.000 0.00 0.00 45.23 4.26
2575 4447 0.603065 TGATCACCGACACCAGTCAG 59.397 55.000 0.00 0.00 45.23 3.51
2580 4452 1.539388 GCAAATTGATCACCGACACCA 59.461 47.619 0.00 0.00 0.00 4.17
2587 4459 2.684881 AGATCGGTGCAAATTGATCACC 59.315 45.455 16.36 11.26 45.02 4.02
2590 4462 5.484173 TGTAAGATCGGTGCAAATTGATC 57.516 39.130 0.00 9.50 37.97 2.92
2593 4465 3.440173 ACCTGTAAGATCGGTGCAAATTG 59.560 43.478 0.00 0.00 34.07 2.32
2595 4467 3.350219 ACCTGTAAGATCGGTGCAAAT 57.650 42.857 0.00 0.00 34.07 2.32
2597 4469 2.851263 AACCTGTAAGATCGGTGCAA 57.149 45.000 0.00 0.00 34.07 4.08
2598 4470 3.965379 TTAACCTGTAAGATCGGTGCA 57.035 42.857 0.00 0.00 34.07 4.57
2599 4471 4.251268 ACTTTAACCTGTAAGATCGGTGC 58.749 43.478 0.00 0.00 34.07 5.01
2600 4472 6.312180 GGTAACTTTAACCTGTAAGATCGGTG 59.688 42.308 0.00 0.00 34.07 4.94
2601 4473 6.401394 GGTAACTTTAACCTGTAAGATCGGT 58.599 40.000 0.00 0.00 34.07 4.69
2602 4474 5.517770 CGGTAACTTTAACCTGTAAGATCGG 59.482 44.000 0.00 0.00 34.07 4.18
2603 4475 6.034256 CACGGTAACTTTAACCTGTAAGATCG 59.966 42.308 0.00 0.00 34.07 3.69
2607 4479 4.992951 AGCACGGTAACTTTAACCTGTAAG 59.007 41.667 0.00 0.00 34.66 2.34
2608 4480 4.959723 AGCACGGTAACTTTAACCTGTAA 58.040 39.130 0.00 0.00 34.66 2.41
2609 4481 4.605640 AGCACGGTAACTTTAACCTGTA 57.394 40.909 0.00 0.00 34.66 2.74
2610 4482 3.480505 AGCACGGTAACTTTAACCTGT 57.519 42.857 0.00 0.00 34.66 4.00
2611 4483 4.823790 AAAGCACGGTAACTTTAACCTG 57.176 40.909 6.55 0.00 34.42 4.00
2612 4484 5.614308 AGTAAAGCACGGTAACTTTAACCT 58.386 37.500 13.84 7.92 39.40 3.50
2614 4486 7.164662 CACAAAGTAAAGCACGGTAACTTTAAC 59.835 37.037 13.84 9.99 39.40 2.01
2616 4488 6.315891 ACACAAAGTAAAGCACGGTAACTTTA 59.684 34.615 10.02 10.02 38.08 1.85
2617 4489 5.124297 ACACAAAGTAAAGCACGGTAACTTT 59.876 36.000 11.58 11.58 40.13 2.66
2618 4490 4.637091 ACACAAAGTAAAGCACGGTAACTT 59.363 37.500 0.00 0.00 31.94 2.66
2619 4491 4.034742 CACACAAAGTAAAGCACGGTAACT 59.965 41.667 0.00 0.00 0.00 2.24
2620 4492 4.276460 CACACAAAGTAAAGCACGGTAAC 58.724 43.478 0.00 0.00 0.00 2.50
2621 4493 3.312973 CCACACAAAGTAAAGCACGGTAA 59.687 43.478 0.00 0.00 0.00 2.85
2622 4494 2.873472 CCACACAAAGTAAAGCACGGTA 59.127 45.455 0.00 0.00 0.00 4.02
2623 4495 1.673920 CCACACAAAGTAAAGCACGGT 59.326 47.619 0.00 0.00 0.00 4.83
2624 4496 1.599419 GCCACACAAAGTAAAGCACGG 60.599 52.381 0.00 0.00 0.00 4.94
2625 4497 1.064803 TGCCACACAAAGTAAAGCACG 59.935 47.619 0.00 0.00 0.00 5.34
2626 4498 2.731217 CTGCCACACAAAGTAAAGCAC 58.269 47.619 0.00 0.00 0.00 4.40
2627 4499 1.066908 GCTGCCACACAAAGTAAAGCA 59.933 47.619 0.00 0.00 32.39 3.91
2628 4500 1.338020 AGCTGCCACACAAAGTAAAGC 59.662 47.619 0.00 0.00 32.31 3.51
2629 4501 3.058224 GGTAGCTGCCACACAAAGTAAAG 60.058 47.826 16.95 0.00 0.00 1.85
2633 4505 0.474184 AGGTAGCTGCCACACAAAGT 59.526 50.000 23.78 0.00 0.00 2.66
2634 4506 2.350522 CTAGGTAGCTGCCACACAAAG 58.649 52.381 23.78 6.32 0.00 2.77
2635 4507 1.610624 GCTAGGTAGCTGCCACACAAA 60.611 52.381 23.78 0.14 45.62 2.83
2636 4508 0.036388 GCTAGGTAGCTGCCACACAA 60.036 55.000 23.78 1.91 45.62 3.33
2637 4509 1.596934 GCTAGGTAGCTGCCACACA 59.403 57.895 23.78 4.06 45.62 3.72
2638 4510 4.522971 GCTAGGTAGCTGCCACAC 57.477 61.111 23.78 7.42 45.62 3.82
2689 4561 1.096416 GGGTGTGTTCACGTGGAAAA 58.904 50.000 17.00 0.00 44.68 2.29
2694 8309 2.013807 CACAGGGTGTGTTCACGTG 58.986 57.895 9.94 9.94 43.08 4.49
2831 8446 1.271934 TGATTTGTTGTGCCCGGAATG 59.728 47.619 0.73 0.00 0.00 2.67
2835 8450 1.178534 AGGTGATTTGTTGTGCCCGG 61.179 55.000 0.00 0.00 0.00 5.73
2837 8452 0.319813 GCAGGTGATTTGTTGTGCCC 60.320 55.000 0.00 0.00 0.00 5.36
2862 8477 2.638363 AGGGTGTAGAAACTCCACTTCC 59.362 50.000 0.00 0.00 40.41 3.46
2863 8478 3.557264 CCAGGGTGTAGAAACTCCACTTC 60.557 52.174 0.00 0.00 40.41 3.01
2864 8479 2.372172 CCAGGGTGTAGAAACTCCACTT 59.628 50.000 0.00 0.00 40.41 3.16
2865 8480 1.978580 CCAGGGTGTAGAAACTCCACT 59.021 52.381 0.00 0.00 40.41 4.00
2866 8481 1.975680 TCCAGGGTGTAGAAACTCCAC 59.024 52.381 0.00 0.00 40.41 4.02
2867 8482 2.257207 CTCCAGGGTGTAGAAACTCCA 58.743 52.381 0.00 0.00 40.41 3.86
2868 8483 1.066071 GCTCCAGGGTGTAGAAACTCC 60.066 57.143 0.00 0.00 38.34 3.85
2869 8484 1.623811 TGCTCCAGGGTGTAGAAACTC 59.376 52.381 0.00 0.00 0.00 3.01
2870 8485 1.729586 TGCTCCAGGGTGTAGAAACT 58.270 50.000 0.00 0.00 0.00 2.66
2871 8486 2.561478 TTGCTCCAGGGTGTAGAAAC 57.439 50.000 0.00 0.00 0.00 2.78
2872 8487 3.420893 CATTTGCTCCAGGGTGTAGAAA 58.579 45.455 0.00 0.00 0.00 2.52
2873 8488 2.879756 GCATTTGCTCCAGGGTGTAGAA 60.880 50.000 0.00 0.00 38.21 2.10
2874 8489 1.340017 GCATTTGCTCCAGGGTGTAGA 60.340 52.381 0.00 0.00 38.21 2.59
2875 8490 1.098050 GCATTTGCTCCAGGGTGTAG 58.902 55.000 0.00 0.00 38.21 2.74
2876 8491 3.264574 GCATTTGCTCCAGGGTGTA 57.735 52.632 0.00 0.00 38.21 2.90
2877 8492 4.102113 GCATTTGCTCCAGGGTGT 57.898 55.556 0.00 0.00 38.21 4.16
2887 8502 0.961019 TTCACACCAGGAGCATTTGC 59.039 50.000 0.00 0.00 42.49 3.68
2888 8503 1.955778 TGTTCACACCAGGAGCATTTG 59.044 47.619 0.00 0.00 0.00 2.32
2889 8504 2.233271 CTGTTCACACCAGGAGCATTT 58.767 47.619 0.00 0.00 0.00 2.32
2890 8505 1.143684 ACTGTTCACACCAGGAGCATT 59.856 47.619 0.00 0.00 34.16 3.56
2891 8506 0.767375 ACTGTTCACACCAGGAGCAT 59.233 50.000 0.00 0.00 34.16 3.79
2892 8507 1.419381 TACTGTTCACACCAGGAGCA 58.581 50.000 0.00 0.00 34.16 4.26
2893 8508 2.543777 TTACTGTTCACACCAGGAGC 57.456 50.000 0.00 0.00 34.16 4.70
2894 8509 7.504924 TTTATTTTACTGTTCACACCAGGAG 57.495 36.000 0.00 0.00 34.16 3.69
2895 8510 7.883391 TTTTATTTTACTGTTCACACCAGGA 57.117 32.000 0.00 0.00 34.16 3.86
2942 8557 7.268586 ACATTTGTACAAGTATGCCACAAAAA 58.731 30.769 16.68 0.00 42.83 1.94
2943 8558 6.810911 ACATTTGTACAAGTATGCCACAAAA 58.189 32.000 16.68 0.00 42.83 2.44
2944 8559 6.398234 ACATTTGTACAAGTATGCCACAAA 57.602 33.333 16.68 10.04 43.29 2.83
2945 8560 6.398234 AACATTTGTACAAGTATGCCACAA 57.602 33.333 16.68 0.00 34.67 3.33
2946 8561 6.212235 CAAACATTTGTACAAGTATGCCACA 58.788 36.000 16.68 0.00 33.59 4.17
2947 8562 6.689178 CAAACATTTGTACAAGTATGCCAC 57.311 37.500 16.68 0.00 33.59 5.01
2961 8576 5.441700 TTTACGTGCACAACAAACATTTG 57.558 34.783 18.64 2.77 43.62 2.32
2962 8577 6.654793 ATTTTACGTGCACAACAAACATTT 57.345 29.167 18.64 0.00 0.00 2.32
2963 8578 6.654793 AATTTTACGTGCACAACAAACATT 57.345 29.167 18.64 11.51 0.00 2.71
2964 8579 6.311445 TGAAATTTTACGTGCACAACAAACAT 59.689 30.769 18.64 4.51 0.00 2.71
2965 8580 5.633601 TGAAATTTTACGTGCACAACAAACA 59.366 32.000 18.64 5.00 0.00 2.83
2966 8581 6.083925 TGAAATTTTACGTGCACAACAAAC 57.916 33.333 18.64 2.63 0.00 2.93
2967 8582 6.291322 CGATGAAATTTTACGTGCACAACAAA 60.291 34.615 18.64 11.77 0.00 2.83
2968 8583 5.172232 CGATGAAATTTTACGTGCACAACAA 59.828 36.000 18.64 4.10 0.00 2.83
2969 8584 4.672862 CGATGAAATTTTACGTGCACAACA 59.327 37.500 18.64 0.00 0.00 3.33
2970 8585 4.431086 GCGATGAAATTTTACGTGCACAAC 60.431 41.667 18.64 0.00 0.00 3.32
2971 8586 3.666334 GCGATGAAATTTTACGTGCACAA 59.334 39.130 18.64 3.45 0.00 3.33
2972 8587 3.230355 GCGATGAAATTTTACGTGCACA 58.770 40.909 18.64 0.00 0.00 4.57
2973 8588 2.272700 CGCGATGAAATTTTACGTGCAC 59.727 45.455 6.82 6.82 0.00 4.57
2974 8589 2.157863 TCGCGATGAAATTTTACGTGCA 59.842 40.909 3.71 0.00 35.07 4.57
2975 8590 2.764768 TCGCGATGAAATTTTACGTGC 58.235 42.857 3.71 6.92 35.07 5.34
2985 8600 4.905750 CACCAATGTGATTTCGCGATGAAA 60.906 41.667 10.88 0.72 45.76 2.69
2986 8601 2.746904 ACCAATGTGATTTCGCGATGAA 59.253 40.909 10.88 1.65 33.85 2.57
2987 8602 2.095692 CACCAATGTGATTTCGCGATGA 59.904 45.455 10.88 1.56 45.76 2.92
2988 8603 2.095692 TCACCAATGTGATTTCGCGATG 59.904 45.455 10.88 1.69 46.40 3.84
2989 8604 2.355197 TCACCAATGTGATTTCGCGAT 58.645 42.857 10.88 0.00 46.40 4.58
2990 8605 1.802069 TCACCAATGTGATTTCGCGA 58.198 45.000 3.71 3.71 46.40 5.87
2999 8614 2.031120 ACCACACCTTTCACCAATGTG 58.969 47.619 0.00 0.00 44.18 3.21
3000 8615 2.452600 ACCACACCTTTCACCAATGT 57.547 45.000 0.00 0.00 0.00 2.71
3001 8616 4.927978 TTTACCACACCTTTCACCAATG 57.072 40.909 0.00 0.00 0.00 2.82
3002 8617 5.941555 TTTTTACCACACCTTTCACCAAT 57.058 34.783 0.00 0.00 0.00 3.16
3024 8639 7.769272 TTTTCAGAGCATCGATTTTGTTTTT 57.231 28.000 0.00 0.00 42.67 1.94
3025 8640 7.439056 ACATTTTCAGAGCATCGATTTTGTTTT 59.561 29.630 0.00 0.00 42.67 2.43
3026 8641 6.925165 ACATTTTCAGAGCATCGATTTTGTTT 59.075 30.769 0.00 0.00 42.67 2.83
3027 8642 6.449698 ACATTTTCAGAGCATCGATTTTGTT 58.550 32.000 0.00 0.00 42.67 2.83
3028 8643 6.017400 ACATTTTCAGAGCATCGATTTTGT 57.983 33.333 0.00 0.00 42.67 2.83
3029 8644 6.939551 AACATTTTCAGAGCATCGATTTTG 57.060 33.333 0.00 0.00 42.67 2.44
3030 8645 7.820648 AGTAACATTTTCAGAGCATCGATTTT 58.179 30.769 0.00 0.00 42.67 1.82
3031 8646 7.383102 AGTAACATTTTCAGAGCATCGATTT 57.617 32.000 0.00 0.00 42.67 2.17
3032 8647 6.992063 AGTAACATTTTCAGAGCATCGATT 57.008 33.333 0.00 0.00 42.67 3.34
3033 8648 6.992063 AAGTAACATTTTCAGAGCATCGAT 57.008 33.333 0.00 0.00 42.67 3.59
3034 8649 6.871492 TGTAAGTAACATTTTCAGAGCATCGA 59.129 34.615 0.00 0.00 34.21 3.59
3035 8650 7.060600 TGTAAGTAACATTTTCAGAGCATCG 57.939 36.000 0.00 0.00 34.21 3.84
3036 8651 9.677567 TTTTGTAAGTAACATTTTCAGAGCATC 57.322 29.630 0.00 0.00 38.10 3.91
3037 8652 9.683069 CTTTTGTAAGTAACATTTTCAGAGCAT 57.317 29.630 0.00 0.00 38.10 3.79
3038 8653 7.647715 GCTTTTGTAAGTAACATTTTCAGAGCA 59.352 33.333 0.00 0.00 38.10 4.26
3039 8654 7.647715 TGCTTTTGTAAGTAACATTTTCAGAGC 59.352 33.333 0.00 0.00 38.10 4.09
3040 8655 9.683069 ATGCTTTTGTAAGTAACATTTTCAGAG 57.317 29.630 0.00 0.00 38.10 3.35
3059 8674 7.281549 ACAAAATCAGAGCTTCAAAATGCTTTT 59.718 29.630 0.00 0.00 39.91 2.27
3060 8675 6.764560 ACAAAATCAGAGCTTCAAAATGCTTT 59.235 30.769 0.00 0.00 39.91 3.51
3061 8676 6.285990 ACAAAATCAGAGCTTCAAAATGCTT 58.714 32.000 0.00 0.00 39.91 3.91
3062 8677 5.850614 ACAAAATCAGAGCTTCAAAATGCT 58.149 33.333 0.00 0.00 42.82 3.79
3063 8678 6.535274 AACAAAATCAGAGCTTCAAAATGC 57.465 33.333 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.