Multiple sequence alignment - TraesCS5B01G355600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G355600 chr5B 100.000 4306 0 0 1 4306 535110288 535114593 0.000000e+00 7952
1 TraesCS5B01G355600 chr5B 94.044 3509 145 24 813 4306 36720307 36723766 0.000000e+00 5264
2 TraesCS5B01G355600 chr5B 92.614 2383 123 19 822 3200 36767815 36765482 0.000000e+00 3376
3 TraesCS5B01G355600 chr5B 93.919 148 8 1 3777 3924 36765233 36765087 5.600000e-54 222
4 TraesCS5B01G355600 chr5B 96.183 131 5 0 3950 4080 36765090 36764960 9.380000e-52 215
5 TraesCS5B01G355600 chr5B 95.000 80 4 0 4180 4259 36764965 36764886 4.520000e-25 126
6 TraesCS5B01G355600 chr5D 96.338 3878 131 7 438 4306 440159807 440163682 0.000000e+00 6364
7 TraesCS5B01G355600 chr5D 94.027 3516 147 25 813 4306 42016662 42020136 0.000000e+00 5271
8 TraesCS5B01G355600 chr5D 88.482 2049 153 32 438 2449 42053920 42051918 0.000000e+00 2399
9 TraesCS5B01G355600 chr5A 96.374 3723 104 21 597 4306 555770318 555774022 0.000000e+00 6098
10 TraesCS5B01G355600 chr5A 92.239 3904 236 36 438 4306 30403958 30407829 0.000000e+00 5469
11 TraesCS5B01G355600 chr3A 83.333 150 22 3 17 165 473521526 473521673 7.510000e-28 135
12 TraesCS5B01G355600 chr7D 81.333 150 25 3 17 165 288684949 288685096 7.560000e-23 119
13 TraesCS5B01G355600 chr7D 74.823 282 59 5 17 288 288689666 288689945 2.720000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G355600 chr5B 535110288 535114593 4305 False 7952.00 7952 100.000 1 4306 1 chr5B.!!$F2 4305
1 TraesCS5B01G355600 chr5B 36720307 36723766 3459 False 5264.00 5264 94.044 813 4306 1 chr5B.!!$F1 3493
2 TraesCS5B01G355600 chr5B 36764886 36767815 2929 True 984.75 3376 94.429 822 4259 4 chr5B.!!$R1 3437
3 TraesCS5B01G355600 chr5D 440159807 440163682 3875 False 6364.00 6364 96.338 438 4306 1 chr5D.!!$F2 3868
4 TraesCS5B01G355600 chr5D 42016662 42020136 3474 False 5271.00 5271 94.027 813 4306 1 chr5D.!!$F1 3493
5 TraesCS5B01G355600 chr5D 42051918 42053920 2002 True 2399.00 2399 88.482 438 2449 1 chr5D.!!$R1 2011
6 TraesCS5B01G355600 chr5A 555770318 555774022 3704 False 6098.00 6098 96.374 597 4306 1 chr5A.!!$F2 3709
7 TraesCS5B01G355600 chr5A 30403958 30407829 3871 False 5469.00 5469 92.239 438 4306 1 chr5A.!!$F1 3868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.107654 GGTGCACCAGAGGTACATCC 60.108 60.000 31.23 0.0 31.09 3.51 F
479 480 0.178975 ACCGCCCAACAGGAAAATCA 60.179 50.000 0.00 0.0 38.24 2.57 F
2055 2101 0.323725 GGAGGATGGCTGAGGCAAAA 60.324 55.000 14.16 0.0 42.43 2.44 F
2115 2177 1.521423 GACGTTGTGACATATAGCGCC 59.479 52.381 2.29 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2177 0.240945 GGCAGAACCCATCAACAACG 59.759 55.000 0.00 0.0 0.00 4.10 R
2460 2522 4.995058 TCTTTGGCCTCCCCCGGT 62.995 66.667 3.32 0.0 0.00 5.28 R
2991 3053 0.673333 TCTGGCACGCCACATTGTAG 60.673 55.000 6.67 0.0 41.89 2.74 R
3702 3875 0.858583 CAACGAACATCTGCGTGACA 59.141 50.000 0.00 0.0 41.06 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.693532 TCACCAAGCATCCGTGTC 57.306 55.556 0.00 0.00 0.00 3.67
18 19 2.057830 TCACCAAGCATCCGTGTCT 58.942 52.632 0.00 0.00 0.00 3.41
19 20 1.262417 TCACCAAGCATCCGTGTCTA 58.738 50.000 0.00 0.00 0.00 2.59
20 21 1.067142 TCACCAAGCATCCGTGTCTAC 60.067 52.381 0.00 0.00 0.00 2.59
21 22 0.249398 ACCAAGCATCCGTGTCTACC 59.751 55.000 0.00 0.00 0.00 3.18
22 23 0.537188 CCAAGCATCCGTGTCTACCT 59.463 55.000 0.00 0.00 0.00 3.08
23 24 1.471676 CCAAGCATCCGTGTCTACCTC 60.472 57.143 0.00 0.00 0.00 3.85
24 25 1.204704 CAAGCATCCGTGTCTACCTCA 59.795 52.381 0.00 0.00 0.00 3.86
25 26 1.107114 AGCATCCGTGTCTACCTCAG 58.893 55.000 0.00 0.00 0.00 3.35
26 27 1.103803 GCATCCGTGTCTACCTCAGA 58.896 55.000 0.00 0.00 0.00 3.27
27 28 1.683917 GCATCCGTGTCTACCTCAGAT 59.316 52.381 0.00 0.00 35.17 2.90
28 29 2.287909 GCATCCGTGTCTACCTCAGATC 60.288 54.545 0.00 0.00 35.17 2.75
29 30 3.218453 CATCCGTGTCTACCTCAGATCT 58.782 50.000 0.00 0.00 35.17 2.75
30 31 4.390264 CATCCGTGTCTACCTCAGATCTA 58.610 47.826 0.00 0.00 35.17 1.98
31 32 4.498894 TCCGTGTCTACCTCAGATCTAA 57.501 45.455 0.00 0.00 35.17 2.10
32 33 5.050126 TCCGTGTCTACCTCAGATCTAAT 57.950 43.478 0.00 0.00 35.17 1.73
33 34 5.446860 TCCGTGTCTACCTCAGATCTAATT 58.553 41.667 0.00 0.00 35.17 1.40
34 35 5.892119 TCCGTGTCTACCTCAGATCTAATTT 59.108 40.000 0.00 0.00 35.17 1.82
35 36 6.380274 TCCGTGTCTACCTCAGATCTAATTTT 59.620 38.462 0.00 0.00 35.17 1.82
36 37 7.558807 TCCGTGTCTACCTCAGATCTAATTTTA 59.441 37.037 0.00 0.00 35.17 1.52
37 38 7.863375 CCGTGTCTACCTCAGATCTAATTTTAG 59.137 40.741 0.00 0.00 35.17 1.85
38 39 7.380065 CGTGTCTACCTCAGATCTAATTTTAGC 59.620 40.741 0.00 0.00 35.17 3.09
39 40 7.654116 GTGTCTACCTCAGATCTAATTTTAGCC 59.346 40.741 0.00 0.00 35.17 3.93
40 41 7.344612 TGTCTACCTCAGATCTAATTTTAGCCA 59.655 37.037 0.00 0.00 35.17 4.75
41 42 8.204836 GTCTACCTCAGATCTAATTTTAGCCAA 58.795 37.037 0.00 0.00 35.17 4.52
42 43 8.768397 TCTACCTCAGATCTAATTTTAGCCAAA 58.232 33.333 0.00 0.00 0.00 3.28
43 44 9.566432 CTACCTCAGATCTAATTTTAGCCAAAT 57.434 33.333 0.00 0.00 36.57 2.32
44 45 8.829373 ACCTCAGATCTAATTTTAGCCAAATT 57.171 30.769 0.00 8.76 45.45 1.82
45 46 9.920946 ACCTCAGATCTAATTTTAGCCAAATTA 57.079 29.630 0.00 9.82 42.35 1.40
59 60 9.988815 TTTAGCCAAATTAAAGAATAAACTGCA 57.011 25.926 0.00 0.00 0.00 4.41
60 61 7.889589 AGCCAAATTAAAGAATAAACTGCAC 57.110 32.000 0.00 0.00 0.00 4.57
61 62 7.441017 AGCCAAATTAAAGAATAAACTGCACA 58.559 30.769 0.00 0.00 0.00 4.57
62 63 7.930865 AGCCAAATTAAAGAATAAACTGCACAA 59.069 29.630 0.00 0.00 0.00 3.33
63 64 8.223100 GCCAAATTAAAGAATAAACTGCACAAG 58.777 33.333 0.00 0.00 0.00 3.16
64 65 9.474920 CCAAATTAAAGAATAAACTGCACAAGA 57.525 29.630 0.00 0.00 0.00 3.02
77 78 8.579682 AAACTGCACAAGATATTTTGAGAAAC 57.420 30.769 12.62 0.00 0.00 2.78
78 79 7.516198 ACTGCACAAGATATTTTGAGAAACT 57.484 32.000 12.62 0.00 0.00 2.66
79 80 7.945134 ACTGCACAAGATATTTTGAGAAACTT 58.055 30.769 12.62 0.00 0.00 2.66
80 81 8.416329 ACTGCACAAGATATTTTGAGAAACTTT 58.584 29.630 12.62 0.00 0.00 2.66
81 82 9.252962 CTGCACAAGATATTTTGAGAAACTTTT 57.747 29.630 12.62 0.00 0.00 2.27
93 94 9.736023 TTTTGAGAAACTTTTAGAGAAATGAGC 57.264 29.630 0.00 0.00 0.00 4.26
94 95 8.682936 TTGAGAAACTTTTAGAGAAATGAGCT 57.317 30.769 0.00 0.00 0.00 4.09
95 96 8.092521 TGAGAAACTTTTAGAGAAATGAGCTG 57.907 34.615 0.00 0.00 0.00 4.24
96 97 7.933577 TGAGAAACTTTTAGAGAAATGAGCTGA 59.066 33.333 0.00 0.00 0.00 4.26
97 98 8.682936 AGAAACTTTTAGAGAAATGAGCTGAA 57.317 30.769 0.00 0.00 0.00 3.02
98 99 9.125026 AGAAACTTTTAGAGAAATGAGCTGAAA 57.875 29.630 0.00 0.00 0.00 2.69
99 100 9.392021 GAAACTTTTAGAGAAATGAGCTGAAAG 57.608 33.333 0.00 0.00 39.61 2.62
100 101 8.457238 AACTTTTAGAGAAATGAGCTGAAAGT 57.543 30.769 0.00 0.00 44.86 2.66
101 102 9.561069 AACTTTTAGAGAAATGAGCTGAAAGTA 57.439 29.630 10.86 0.00 43.31 2.24
102 103 9.561069 ACTTTTAGAGAAATGAGCTGAAAGTAA 57.439 29.630 0.00 0.00 42.73 2.24
105 106 9.778741 TTTAGAGAAATGAGCTGAAAGTAAAGA 57.221 29.630 0.00 0.00 35.30 2.52
106 107 9.778741 TTAGAGAAATGAGCTGAAAGTAAAGAA 57.221 29.630 0.00 0.00 35.30 2.52
107 108 8.860780 AGAGAAATGAGCTGAAAGTAAAGAAT 57.139 30.769 0.00 0.00 35.30 2.40
108 109 8.945057 AGAGAAATGAGCTGAAAGTAAAGAATC 58.055 33.333 0.00 0.00 35.30 2.52
109 110 7.746929 AGAAATGAGCTGAAAGTAAAGAATCG 58.253 34.615 0.00 0.00 35.30 3.34
110 111 7.389053 AGAAATGAGCTGAAAGTAAAGAATCGT 59.611 33.333 0.00 0.00 35.30 3.73
111 112 5.845985 TGAGCTGAAAGTAAAGAATCGTG 57.154 39.130 0.00 0.00 35.30 4.35
112 113 5.297547 TGAGCTGAAAGTAAAGAATCGTGT 58.702 37.500 0.00 0.00 35.30 4.49
113 114 5.177511 TGAGCTGAAAGTAAAGAATCGTGTG 59.822 40.000 0.00 0.00 35.30 3.82
114 115 5.057149 AGCTGAAAGTAAAGAATCGTGTGT 58.943 37.500 0.00 0.00 35.30 3.72
115 116 6.220930 AGCTGAAAGTAAAGAATCGTGTGTA 58.779 36.000 0.00 0.00 35.30 2.90
116 117 6.145696 AGCTGAAAGTAAAGAATCGTGTGTAC 59.854 38.462 0.00 0.00 35.30 2.90
117 118 6.617953 GCTGAAAGTAAAGAATCGTGTGTACC 60.618 42.308 0.00 0.00 35.30 3.34
118 119 6.282167 TGAAAGTAAAGAATCGTGTGTACCA 58.718 36.000 0.00 0.00 0.00 3.25
119 120 6.762187 TGAAAGTAAAGAATCGTGTGTACCAA 59.238 34.615 0.00 0.00 0.00 3.67
120 121 7.280428 TGAAAGTAAAGAATCGTGTGTACCAAA 59.720 33.333 0.00 0.00 0.00 3.28
121 122 7.556733 AAGTAAAGAATCGTGTGTACCAAAA 57.443 32.000 0.00 0.00 0.00 2.44
122 123 7.186021 AGTAAAGAATCGTGTGTACCAAAAG 57.814 36.000 0.00 0.00 0.00 2.27
123 124 4.483476 AAGAATCGTGTGTACCAAAAGC 57.517 40.909 0.00 0.00 0.00 3.51
124 125 3.740115 AGAATCGTGTGTACCAAAAGCT 58.260 40.909 0.00 0.00 0.00 3.74
125 126 4.134563 AGAATCGTGTGTACCAAAAGCTT 58.865 39.130 0.00 0.00 0.00 3.74
126 127 4.578928 AGAATCGTGTGTACCAAAAGCTTT 59.421 37.500 5.69 5.69 0.00 3.51
127 128 5.761234 AGAATCGTGTGTACCAAAAGCTTTA 59.239 36.000 13.10 0.00 0.00 1.85
128 129 6.430000 AGAATCGTGTGTACCAAAAGCTTTAT 59.570 34.615 13.10 3.97 0.00 1.40
129 130 5.351233 TCGTGTGTACCAAAAGCTTTATG 57.649 39.130 13.10 12.36 0.00 1.90
130 131 3.911964 CGTGTGTACCAAAAGCTTTATGC 59.088 43.478 13.10 5.71 43.29 3.14
131 132 4.555708 CGTGTGTACCAAAAGCTTTATGCA 60.556 41.667 13.10 8.27 45.94 3.96
132 133 4.917415 GTGTGTACCAAAAGCTTTATGCAG 59.083 41.667 13.10 2.44 45.94 4.41
133 134 4.824537 TGTGTACCAAAAGCTTTATGCAGA 59.175 37.500 13.10 6.95 45.94 4.26
134 135 5.154222 GTGTACCAAAAGCTTTATGCAGAC 58.846 41.667 13.10 6.98 45.94 3.51
135 136 3.559238 ACCAAAAGCTTTATGCAGACG 57.441 42.857 13.10 3.31 45.94 4.18
136 137 2.253603 CCAAAAGCTTTATGCAGACGC 58.746 47.619 13.10 0.00 45.94 5.19
137 138 2.095059 CCAAAAGCTTTATGCAGACGCT 60.095 45.455 13.10 0.00 45.94 5.07
138 139 3.568538 CAAAAGCTTTATGCAGACGCTT 58.431 40.909 13.10 10.34 45.94 4.68
139 140 3.477899 AAAGCTTTATGCAGACGCTTC 57.522 42.857 10.72 0.00 45.94 3.86
140 141 1.002366 AGCTTTATGCAGACGCTTCG 58.998 50.000 0.00 0.00 45.94 3.79
141 142 0.999406 GCTTTATGCAGACGCTTCGA 59.001 50.000 0.00 0.00 42.31 3.71
142 143 1.594862 GCTTTATGCAGACGCTTCGAT 59.405 47.619 0.00 0.00 42.31 3.59
143 144 2.598439 GCTTTATGCAGACGCTTCGATG 60.598 50.000 0.00 0.00 42.31 3.84
144 145 0.930310 TTATGCAGACGCTTCGATGC 59.070 50.000 13.01 13.01 40.91 3.91
145 146 2.048316 TGCAGACGCTTCGATGCA 60.048 55.556 21.52 13.85 44.83 3.96
146 147 2.096442 TGCAGACGCTTCGATGCAG 61.096 57.895 21.52 16.04 43.36 4.41
147 148 2.097038 GCAGACGCTTCGATGCAGT 61.097 57.895 21.52 18.67 40.52 4.40
148 149 1.630244 GCAGACGCTTCGATGCAGTT 61.630 55.000 21.52 6.45 40.52 3.16
149 150 0.792640 CAGACGCTTCGATGCAGTTT 59.207 50.000 21.52 12.83 0.00 2.66
150 151 1.195448 CAGACGCTTCGATGCAGTTTT 59.805 47.619 21.52 10.58 0.00 2.43
151 152 2.411748 CAGACGCTTCGATGCAGTTTTA 59.588 45.455 21.52 0.00 0.00 1.52
152 153 3.062639 CAGACGCTTCGATGCAGTTTTAT 59.937 43.478 21.52 7.06 0.00 1.40
153 154 4.267690 CAGACGCTTCGATGCAGTTTTATA 59.732 41.667 21.52 0.00 0.00 0.98
154 155 4.267928 AGACGCTTCGATGCAGTTTTATAC 59.732 41.667 21.52 8.47 0.00 1.47
155 156 3.308866 ACGCTTCGATGCAGTTTTATACC 59.691 43.478 21.52 0.00 0.00 2.73
156 157 3.303132 CGCTTCGATGCAGTTTTATACCC 60.303 47.826 21.52 0.00 0.00 3.69
157 158 3.877508 GCTTCGATGCAGTTTTATACCCT 59.122 43.478 17.62 0.00 0.00 4.34
158 159 4.024809 GCTTCGATGCAGTTTTATACCCTC 60.025 45.833 17.62 0.00 0.00 4.30
159 160 3.713288 TCGATGCAGTTTTATACCCTCG 58.287 45.455 0.00 0.00 0.00 4.63
160 161 3.382227 TCGATGCAGTTTTATACCCTCGA 59.618 43.478 0.00 0.00 0.00 4.04
161 162 3.736252 CGATGCAGTTTTATACCCTCGAG 59.264 47.826 5.13 5.13 0.00 4.04
162 163 3.536956 TGCAGTTTTATACCCTCGAGG 57.463 47.619 25.36 25.36 43.78 4.63
178 179 7.443259 CCCTCGAGGTTTTGATTTTACTAAA 57.557 36.000 29.25 0.00 0.00 1.85
179 180 8.051901 CCCTCGAGGTTTTGATTTTACTAAAT 57.948 34.615 29.25 0.00 36.68 1.40
180 181 8.520351 CCCTCGAGGTTTTGATTTTACTAAATT 58.480 33.333 29.25 0.00 34.16 1.82
181 182 9.908152 CCTCGAGGTTTTGATTTTACTAAATTT 57.092 29.630 24.04 0.00 34.16 1.82
192 193 8.447833 TGATTTTACTAAATTTAGTGGTGAGCG 58.552 33.333 31.97 7.30 43.44 5.03
193 194 7.733402 TTTTACTAAATTTAGTGGTGAGCGT 57.267 32.000 31.97 12.10 43.44 5.07
194 195 8.830201 TTTTACTAAATTTAGTGGTGAGCGTA 57.170 30.769 31.97 12.75 43.44 4.42
195 196 9.439500 TTTTACTAAATTTAGTGGTGAGCGTAT 57.561 29.630 31.97 10.39 43.44 3.06
199 200 9.439500 ACTAAATTTAGTGGTGAGCGTATAAAA 57.561 29.630 26.30 0.00 42.13 1.52
205 206 9.439500 TTTAGTGGTGAGCGTATAAAAATAACT 57.561 29.630 0.00 0.00 0.00 2.24
206 207 7.916914 AGTGGTGAGCGTATAAAAATAACTT 57.083 32.000 0.00 0.00 0.00 2.66
207 208 8.331730 AGTGGTGAGCGTATAAAAATAACTTT 57.668 30.769 0.00 0.00 0.00 2.66
208 209 8.448615 AGTGGTGAGCGTATAAAAATAACTTTC 58.551 33.333 0.00 0.00 0.00 2.62
209 210 8.231837 GTGGTGAGCGTATAAAAATAACTTTCA 58.768 33.333 0.00 0.00 0.00 2.69
210 211 8.784994 TGGTGAGCGTATAAAAATAACTTTCAA 58.215 29.630 0.00 0.00 0.00 2.69
211 212 9.615295 GGTGAGCGTATAAAAATAACTTTCAAA 57.385 29.630 0.00 0.00 0.00 2.69
215 216 9.953697 AGCGTATAAAAATAACTTTCAAACACA 57.046 25.926 0.00 0.00 0.00 3.72
232 233 9.665719 TTCAAACACATTAGTCAATATCTAGCA 57.334 29.630 0.00 0.00 0.00 3.49
233 234 9.836864 TCAAACACATTAGTCAATATCTAGCAT 57.163 29.630 0.00 0.00 0.00 3.79
239 240 9.935241 ACATTAGTCAATATCTAGCATAACTGG 57.065 33.333 0.00 0.00 0.00 4.00
240 241 8.877779 CATTAGTCAATATCTAGCATAACTGGC 58.122 37.037 0.00 0.00 0.00 4.85
241 242 6.678568 AGTCAATATCTAGCATAACTGGCT 57.321 37.500 0.00 0.00 45.18 4.75
242 243 6.462500 AGTCAATATCTAGCATAACTGGCTG 58.538 40.000 0.00 0.00 42.62 4.85
243 244 6.268617 AGTCAATATCTAGCATAACTGGCTGA 59.731 38.462 0.00 0.00 42.62 4.26
244 245 6.931281 GTCAATATCTAGCATAACTGGCTGAA 59.069 38.462 0.00 0.00 42.62 3.02
245 246 7.442364 GTCAATATCTAGCATAACTGGCTGAAA 59.558 37.037 0.00 0.00 42.62 2.69
246 247 8.159447 TCAATATCTAGCATAACTGGCTGAAAT 58.841 33.333 0.00 0.00 42.62 2.17
247 248 9.440773 CAATATCTAGCATAACTGGCTGAAATA 57.559 33.333 0.00 0.00 42.62 1.40
249 250 7.918536 ATCTAGCATAACTGGCTGAAATATG 57.081 36.000 0.00 5.53 42.62 1.78
250 251 6.830912 TCTAGCATAACTGGCTGAAATATGT 58.169 36.000 0.00 0.00 42.62 2.29
251 252 7.282585 TCTAGCATAACTGGCTGAAATATGTT 58.717 34.615 0.00 5.15 42.62 2.71
252 253 6.382869 AGCATAACTGGCTGAAATATGTTC 57.617 37.500 0.00 0.00 40.80 3.18
253 254 5.300286 AGCATAACTGGCTGAAATATGTTCC 59.700 40.000 0.00 0.00 40.80 3.62
254 255 5.067674 GCATAACTGGCTGAAATATGTTCCA 59.932 40.000 0.00 0.00 0.00 3.53
255 256 6.239120 GCATAACTGGCTGAAATATGTTCCAT 60.239 38.462 0.00 0.00 0.00 3.41
256 257 5.841957 AACTGGCTGAAATATGTTCCATC 57.158 39.130 0.00 0.00 0.00 3.51
257 258 4.858850 ACTGGCTGAAATATGTTCCATCA 58.141 39.130 0.00 0.00 0.00 3.07
258 259 5.263599 ACTGGCTGAAATATGTTCCATCAA 58.736 37.500 0.00 0.00 0.00 2.57
259 260 5.895534 ACTGGCTGAAATATGTTCCATCAAT 59.104 36.000 0.00 0.00 0.00 2.57
260 261 6.151663 TGGCTGAAATATGTTCCATCAATG 57.848 37.500 0.00 0.00 0.00 2.82
261 262 5.892686 TGGCTGAAATATGTTCCATCAATGA 59.107 36.000 0.00 0.00 0.00 2.57
262 263 6.380560 TGGCTGAAATATGTTCCATCAATGAA 59.619 34.615 0.00 0.00 0.00 2.57
263 264 7.070198 TGGCTGAAATATGTTCCATCAATGAAT 59.930 33.333 0.00 0.00 0.00 2.57
264 265 7.929785 GGCTGAAATATGTTCCATCAATGAATT 59.070 33.333 0.00 0.00 0.00 2.17
265 266 9.970395 GCTGAAATATGTTCCATCAATGAATTA 57.030 29.630 0.00 0.00 0.00 1.40
273 274 8.815141 TGTTCCATCAATGAATTAAAAGTGTG 57.185 30.769 0.00 0.00 0.00 3.82
274 275 8.420222 TGTTCCATCAATGAATTAAAAGTGTGT 58.580 29.630 0.00 0.00 0.00 3.72
275 276 9.260002 GTTCCATCAATGAATTAAAAGTGTGTT 57.740 29.630 0.00 0.00 0.00 3.32
276 277 9.474920 TTCCATCAATGAATTAAAAGTGTGTTC 57.525 29.630 0.00 0.00 0.00 3.18
277 278 8.637099 TCCATCAATGAATTAAAAGTGTGTTCA 58.363 29.630 0.00 0.00 33.82 3.18
278 279 9.426837 CCATCAATGAATTAAAAGTGTGTTCAT 57.573 29.630 0.00 0.00 40.22 2.57
306 307 8.391075 TCTTTATTAAATACCAGGCATAGTGC 57.609 34.615 0.00 0.00 44.08 4.40
331 332 6.801718 TGGCACATAAACTACCTATACACT 57.198 37.500 0.00 0.00 0.00 3.55
332 333 7.190335 TGGCACATAAACTACCTATACACTT 57.810 36.000 0.00 0.00 0.00 3.16
333 334 7.626390 TGGCACATAAACTACCTATACACTTT 58.374 34.615 0.00 0.00 0.00 2.66
334 335 7.767198 TGGCACATAAACTACCTATACACTTTC 59.233 37.037 0.00 0.00 0.00 2.62
335 336 7.767198 GGCACATAAACTACCTATACACTTTCA 59.233 37.037 0.00 0.00 0.00 2.69
336 337 8.818057 GCACATAAACTACCTATACACTTTCAG 58.182 37.037 0.00 0.00 0.00 3.02
337 338 9.871238 CACATAAACTACCTATACACTTTCAGT 57.129 33.333 0.00 0.00 0.00 3.41
342 343 9.924650 AAACTACCTATACACTTTCAGTAGTTG 57.075 33.333 12.00 0.00 44.49 3.16
343 344 8.647256 ACTACCTATACACTTTCAGTAGTTGT 57.353 34.615 0.00 0.00 36.45 3.32
344 345 8.738106 ACTACCTATACACTTTCAGTAGTTGTC 58.262 37.037 0.00 0.00 36.45 3.18
345 346 6.932947 ACCTATACACTTTCAGTAGTTGTCC 58.067 40.000 0.00 0.00 0.00 4.02
346 347 6.724905 ACCTATACACTTTCAGTAGTTGTCCT 59.275 38.462 0.00 0.00 0.00 3.85
347 348 7.234988 ACCTATACACTTTCAGTAGTTGTCCTT 59.765 37.037 0.00 0.00 0.00 3.36
348 349 8.095169 CCTATACACTTTCAGTAGTTGTCCTTT 58.905 37.037 0.00 0.00 0.00 3.11
349 350 7.964604 ATACACTTTCAGTAGTTGTCCTTTC 57.035 36.000 0.00 0.00 0.00 2.62
350 351 5.990668 ACACTTTCAGTAGTTGTCCTTTCT 58.009 37.500 0.00 0.00 0.00 2.52
351 352 7.120923 ACACTTTCAGTAGTTGTCCTTTCTA 57.879 36.000 0.00 0.00 0.00 2.10
352 353 6.985059 ACACTTTCAGTAGTTGTCCTTTCTAC 59.015 38.462 0.00 0.00 35.63 2.59
353 354 6.984474 CACTTTCAGTAGTTGTCCTTTCTACA 59.016 38.462 0.00 0.00 37.20 2.74
354 355 7.657761 CACTTTCAGTAGTTGTCCTTTCTACAT 59.342 37.037 0.00 0.00 37.20 2.29
355 356 7.873505 ACTTTCAGTAGTTGTCCTTTCTACATC 59.126 37.037 0.00 0.00 37.20 3.06
356 357 7.540474 TTCAGTAGTTGTCCTTTCTACATCT 57.460 36.000 0.00 0.00 37.20 2.90
357 358 6.925211 TCAGTAGTTGTCCTTTCTACATCTG 58.075 40.000 0.00 0.00 37.20 2.90
358 359 6.071334 TCAGTAGTTGTCCTTTCTACATCTGG 60.071 42.308 0.00 0.00 37.20 3.86
359 360 3.944087 AGTTGTCCTTTCTACATCTGGC 58.056 45.455 0.00 0.00 0.00 4.85
360 361 3.584848 AGTTGTCCTTTCTACATCTGGCT 59.415 43.478 0.00 0.00 0.00 4.75
361 362 3.895232 TGTCCTTTCTACATCTGGCTC 57.105 47.619 0.00 0.00 0.00 4.70
362 363 2.501723 TGTCCTTTCTACATCTGGCTCC 59.498 50.000 0.00 0.00 0.00 4.70
363 364 2.119495 TCCTTTCTACATCTGGCTCCC 58.881 52.381 0.00 0.00 0.00 4.30
364 365 1.141858 CCTTTCTACATCTGGCTCCCC 59.858 57.143 0.00 0.00 0.00 4.81
365 366 1.839994 CTTTCTACATCTGGCTCCCCA 59.160 52.381 0.00 0.00 39.32 4.96
375 376 4.954933 GCTCCCCAGCGTTTATCA 57.045 55.556 0.00 0.00 35.39 2.15
376 377 3.403936 GCTCCCCAGCGTTTATCAT 57.596 52.632 0.00 0.00 35.39 2.45
377 378 2.543777 GCTCCCCAGCGTTTATCATA 57.456 50.000 0.00 0.00 35.39 2.15
378 379 2.417719 GCTCCCCAGCGTTTATCATAG 58.582 52.381 0.00 0.00 35.39 2.23
379 380 2.872038 GCTCCCCAGCGTTTATCATAGG 60.872 54.545 0.00 0.00 35.39 2.57
380 381 1.071699 TCCCCAGCGTTTATCATAGGC 59.928 52.381 0.00 0.00 0.00 3.93
381 382 1.202758 CCCCAGCGTTTATCATAGGCA 60.203 52.381 0.00 0.00 0.00 4.75
382 383 2.553028 CCCCAGCGTTTATCATAGGCAT 60.553 50.000 0.00 0.00 0.00 4.40
383 384 2.485426 CCCAGCGTTTATCATAGGCATG 59.515 50.000 0.00 0.00 0.00 4.06
384 385 3.402110 CCAGCGTTTATCATAGGCATGA 58.598 45.455 0.00 2.83 45.15 3.07
395 396 4.727677 TCATAGGCATGATAATTGGTGCA 58.272 39.130 0.00 0.00 39.27 4.57
396 397 4.520111 TCATAGGCATGATAATTGGTGCAC 59.480 41.667 8.80 8.80 39.27 4.57
397 398 2.034124 AGGCATGATAATTGGTGCACC 58.966 47.619 29.67 29.67 39.27 5.01
398 399 1.755959 GGCATGATAATTGGTGCACCA 59.244 47.619 34.74 34.74 45.94 4.17
399 400 8.448303 CATAGGCATGATAATTGGTGCACCAG 62.448 46.154 35.60 23.19 39.87 4.00
406 407 4.304432 TGGTGCACCAGAGGTACA 57.696 55.556 34.74 9.57 42.01 2.90
407 408 2.772102 TGGTGCACCAGAGGTACAT 58.228 52.632 34.74 0.00 42.01 2.29
408 409 0.613260 TGGTGCACCAGAGGTACATC 59.387 55.000 34.74 4.32 42.01 3.06
409 410 0.107654 GGTGCACCAGAGGTACATCC 60.108 60.000 31.23 0.00 31.09 3.51
410 411 2.517809 GGTGCACCAGAGGTACATCCT 61.518 57.143 31.23 0.00 42.13 3.24
411 412 4.008556 GGTGCACCAGAGGTACATCCTT 62.009 54.545 31.23 0.00 40.56 3.36
412 413 5.801711 GGTGCACCAGAGGTACATCCTTC 62.802 56.522 31.23 0.00 40.56 3.46
420 421 3.715648 AGGTACATCCTTCCTGATCCT 57.284 47.619 0.00 0.00 45.67 3.24
421 422 3.582164 AGGTACATCCTTCCTGATCCTC 58.418 50.000 0.00 0.00 45.67 3.71
422 423 3.208692 AGGTACATCCTTCCTGATCCTCT 59.791 47.826 0.00 0.00 45.67 3.69
423 424 3.576550 GGTACATCCTTCCTGATCCTCTC 59.423 52.174 0.00 0.00 0.00 3.20
424 425 2.315176 ACATCCTTCCTGATCCTCTCG 58.685 52.381 0.00 0.00 0.00 4.04
425 426 2.315176 CATCCTTCCTGATCCTCTCGT 58.685 52.381 0.00 0.00 0.00 4.18
426 427 1.769026 TCCTTCCTGATCCTCTCGTG 58.231 55.000 0.00 0.00 0.00 4.35
427 428 1.006043 TCCTTCCTGATCCTCTCGTGT 59.994 52.381 0.00 0.00 0.00 4.49
428 429 1.827969 CCTTCCTGATCCTCTCGTGTT 59.172 52.381 0.00 0.00 0.00 3.32
429 430 3.024547 CCTTCCTGATCCTCTCGTGTTA 58.975 50.000 0.00 0.00 0.00 2.41
430 431 3.067461 CCTTCCTGATCCTCTCGTGTTAG 59.933 52.174 0.00 0.00 0.00 2.34
431 432 3.646736 TCCTGATCCTCTCGTGTTAGA 57.353 47.619 0.00 0.00 0.00 2.10
432 433 3.964411 TCCTGATCCTCTCGTGTTAGAA 58.036 45.455 0.00 0.00 0.00 2.10
433 434 4.341487 TCCTGATCCTCTCGTGTTAGAAA 58.659 43.478 0.00 0.00 0.00 2.52
434 435 4.770531 TCCTGATCCTCTCGTGTTAGAAAA 59.229 41.667 0.00 0.00 0.00 2.29
435 436 5.245301 TCCTGATCCTCTCGTGTTAGAAAAA 59.755 40.000 0.00 0.00 0.00 1.94
436 437 5.578727 CCTGATCCTCTCGTGTTAGAAAAAG 59.421 44.000 0.00 0.00 0.00 2.27
445 446 3.078837 GTGTTAGAAAAAGGCCATCCGA 58.921 45.455 5.01 0.00 37.47 4.55
448 449 2.586648 AGAAAAAGGCCATCCGAACT 57.413 45.000 5.01 0.00 37.47 3.01
455 456 3.864789 AGGCCATCCGAACTTCATATT 57.135 42.857 5.01 0.00 37.47 1.28
470 471 2.092699 TCATATTCATCACCGCCCAACA 60.093 45.455 0.00 0.00 0.00 3.33
471 472 2.036958 TATTCATCACCGCCCAACAG 57.963 50.000 0.00 0.00 0.00 3.16
472 473 0.680921 ATTCATCACCGCCCAACAGG 60.681 55.000 0.00 0.00 39.47 4.00
479 480 0.178975 ACCGCCCAACAGGAAAATCA 60.179 50.000 0.00 0.00 38.24 2.57
493 494 5.068987 CAGGAAAATCAAGAAAGACCACCAA 59.931 40.000 0.00 0.00 0.00 3.67
499 500 8.421249 AAATCAAGAAAGACCACCAAATATGA 57.579 30.769 0.00 0.00 0.00 2.15
506 507 3.118738 AGACCACCAAATATGACGTCCTC 60.119 47.826 14.12 0.00 0.00 3.71
513 514 1.735376 ATATGACGTCCTCGCGCCTT 61.735 55.000 14.12 0.00 41.18 4.35
576 582 2.283388 CCACCATGGGCAGCAACT 60.283 61.111 18.09 0.00 32.67 3.16
621 627 4.003648 CCACACTTCTCCTCAACCATAAC 58.996 47.826 0.00 0.00 0.00 1.89
631 638 4.162320 TCCTCAACCATAACTAAGAGGCAG 59.838 45.833 0.00 0.00 41.79 4.85
638 646 5.823045 ACCATAACTAAGAGGCAGCAAATAC 59.177 40.000 0.00 0.00 0.00 1.89
656 664 6.347402 GCAAATACGAAGACTCTAAGTTTGCA 60.347 38.462 16.28 0.00 44.76 4.08
664 672 6.346477 AGACTCTAAGTTTGCACACTATCA 57.654 37.500 5.82 0.00 0.00 2.15
667 675 5.934625 ACTCTAAGTTTGCACACTATCAAGG 59.065 40.000 5.82 0.00 0.00 3.61
671 679 1.825090 TTGCACACTATCAAGGCAGG 58.175 50.000 0.00 0.00 35.68 4.85
726 735 4.065088 TGACGATTTTGCTAGAGTTGCTT 58.935 39.130 0.00 0.00 0.00 3.91
730 739 6.603095 ACGATTTTGCTAGAGTTGCTTTTAG 58.397 36.000 0.00 0.00 0.00 1.85
743 752 3.775202 TGCTTTTAGAAAACAGCGCAAA 58.225 36.364 11.47 0.00 40.58 3.68
800 834 4.766891 TGGAGAAGCCTGGTATTTCAAAAG 59.233 41.667 0.00 0.00 37.63 2.27
806 840 5.076873 AGCCTGGTATTTCAAAAGCTTACA 58.923 37.500 0.00 0.00 0.00 2.41
826 860 3.119459 ACAACTACTGGACATCGTAGCAG 60.119 47.826 0.00 0.00 37.26 4.24
862 896 4.394712 CCTGACGCTGTGACCCCC 62.395 72.222 0.00 0.00 0.00 5.40
890 924 4.996434 CTCCGGCCCATCCATCGC 62.996 72.222 0.00 0.00 34.01 4.58
947 986 4.740822 GCACCCTCCGGCCATTGT 62.741 66.667 2.24 0.00 0.00 2.71
1024 1067 2.029110 GCTGGGCATCTAAGCAAAAACA 60.029 45.455 0.00 0.00 36.91 2.83
1141 1187 2.494918 CCCACGACGATGACCTCC 59.505 66.667 0.00 0.00 0.00 4.30
1142 1188 2.348104 CCCACGACGATGACCTCCA 61.348 63.158 0.00 0.00 0.00 3.86
1575 1621 3.369381 GTGCGCACCTGACATATCT 57.631 52.632 30.12 0.00 0.00 1.98
1678 1724 2.428925 GGGGTCGAGCCGGATGTAA 61.429 63.158 26.31 0.00 38.44 2.41
1717 1763 3.992943 TCAAGGGGTTATGTAGTGTGG 57.007 47.619 0.00 0.00 0.00 4.17
2055 2101 0.323725 GGAGGATGGCTGAGGCAAAA 60.324 55.000 14.16 0.00 42.43 2.44
2115 2177 1.521423 GACGTTGTGACATATAGCGCC 59.479 52.381 2.29 0.00 0.00 6.53
2460 2522 5.124776 CCATGCGTTATGTAAGGAAGGAAAA 59.875 40.000 0.00 0.00 34.87 2.29
2784 2846 4.202223 TGTGAGAAAGGTACAGTGGAAGAC 60.202 45.833 0.00 0.00 0.00 3.01
2794 2856 4.442375 ACAGTGGAAGACTTACTCGATG 57.558 45.455 0.00 0.00 29.75 3.84
2991 3053 0.109039 GAGGTCTCGCAGTTCAGTCC 60.109 60.000 0.00 0.00 0.00 3.85
3143 3211 7.777440 AGAAAGAGGTCTTCTGAAACAAGAAAT 59.223 33.333 0.00 0.00 35.79 2.17
3334 3497 1.133976 GCTTCATGCTCATACCCCTGT 60.134 52.381 0.00 0.00 38.95 4.00
3348 3511 0.036306 CCCTGTACCTGTCACCAACC 59.964 60.000 0.00 0.00 0.00 3.77
3702 3875 1.346062 TCAGCTTCACTCTCAGCCTT 58.654 50.000 0.00 0.00 36.62 4.35
3806 3979 3.650139 CCTACGGCATCATGGTAACTAC 58.350 50.000 0.00 0.00 37.61 2.73
3857 4031 4.401925 AGTCCTTTGTGCTGCTTAGAAAT 58.598 39.130 0.00 0.00 0.00 2.17
3861 4035 4.022935 CCTTTGTGCTGCTTAGAAATGACA 60.023 41.667 0.00 0.00 0.00 3.58
3998 4172 1.068588 CTCGTCCTCCAGTTTGTGACA 59.931 52.381 0.00 0.00 0.00 3.58
4059 4233 4.032452 TGCGGCTCATTGGGCAGA 62.032 61.111 13.13 0.00 0.00 4.26
4238 4412 1.029947 TCATCTCGTGGCTCGCTGTA 61.030 55.000 3.73 0.00 39.67 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067142 GTAGACACGGATGCTTGGTGA 60.067 52.381 7.21 0.00 35.68 4.02
1 2 1.359848 GTAGACACGGATGCTTGGTG 58.640 55.000 0.00 0.00 37.67 4.17
2 3 0.249398 GGTAGACACGGATGCTTGGT 59.751 55.000 0.00 0.00 0.00 3.67
3 4 0.537188 AGGTAGACACGGATGCTTGG 59.463 55.000 0.00 0.00 0.00 3.61
4 5 1.204704 TGAGGTAGACACGGATGCTTG 59.795 52.381 0.00 0.00 0.00 4.01
5 6 1.478510 CTGAGGTAGACACGGATGCTT 59.521 52.381 0.00 0.00 0.00 3.91
6 7 1.107114 CTGAGGTAGACACGGATGCT 58.893 55.000 0.00 0.00 0.00 3.79
7 8 1.103803 TCTGAGGTAGACACGGATGC 58.896 55.000 0.00 0.00 0.00 3.91
8 9 3.218453 AGATCTGAGGTAGACACGGATG 58.782 50.000 0.00 0.00 38.49 3.51
9 10 3.586470 AGATCTGAGGTAGACACGGAT 57.414 47.619 0.00 0.00 38.49 4.18
10 11 4.498894 TTAGATCTGAGGTAGACACGGA 57.501 45.455 5.18 0.00 38.49 4.69
11 12 5.776173 AATTAGATCTGAGGTAGACACGG 57.224 43.478 5.18 0.00 38.49 4.94
12 13 7.380065 GCTAAAATTAGATCTGAGGTAGACACG 59.620 40.741 5.18 0.00 38.49 4.49
13 14 7.654116 GGCTAAAATTAGATCTGAGGTAGACAC 59.346 40.741 5.18 0.00 38.49 3.67
14 15 7.344612 TGGCTAAAATTAGATCTGAGGTAGACA 59.655 37.037 5.18 5.97 38.49 3.41
15 16 7.727181 TGGCTAAAATTAGATCTGAGGTAGAC 58.273 38.462 5.18 3.42 38.49 2.59
16 17 7.914427 TGGCTAAAATTAGATCTGAGGTAGA 57.086 36.000 5.18 0.00 40.37 2.59
17 18 8.964476 TTTGGCTAAAATTAGATCTGAGGTAG 57.036 34.615 5.18 1.95 32.47 3.18
18 19 9.920946 AATTTGGCTAAAATTAGATCTGAGGTA 57.079 29.630 5.18 0.00 44.84 3.08
19 20 8.829373 AATTTGGCTAAAATTAGATCTGAGGT 57.171 30.769 5.18 0.00 44.84 3.85
33 34 9.988815 TGCAGTTTATTCTTTAATTTGGCTAAA 57.011 25.926 0.00 0.00 0.00 1.85
34 35 9.418045 GTGCAGTTTATTCTTTAATTTGGCTAA 57.582 29.630 0.00 0.00 0.00 3.09
35 36 8.580720 TGTGCAGTTTATTCTTTAATTTGGCTA 58.419 29.630 0.00 0.00 0.00 3.93
36 37 7.441017 TGTGCAGTTTATTCTTTAATTTGGCT 58.559 30.769 0.00 0.00 0.00 4.75
37 38 7.650834 TGTGCAGTTTATTCTTTAATTTGGC 57.349 32.000 0.00 0.00 0.00 4.52
38 39 9.474920 TCTTGTGCAGTTTATTCTTTAATTTGG 57.525 29.630 0.00 0.00 0.00 3.28
51 52 9.677567 GTTTCTCAAAATATCTTGTGCAGTTTA 57.322 29.630 0.00 0.00 0.00 2.01
52 53 8.416329 AGTTTCTCAAAATATCTTGTGCAGTTT 58.584 29.630 0.00 0.00 0.00 2.66
53 54 7.945134 AGTTTCTCAAAATATCTTGTGCAGTT 58.055 30.769 0.00 0.00 0.00 3.16
54 55 7.516198 AGTTTCTCAAAATATCTTGTGCAGT 57.484 32.000 0.00 0.00 0.00 4.40
55 56 8.807667 AAAGTTTCTCAAAATATCTTGTGCAG 57.192 30.769 0.00 0.00 0.00 4.41
67 68 9.736023 GCTCATTTCTCTAAAAGTTTCTCAAAA 57.264 29.630 0.00 0.00 0.00 2.44
68 69 9.125026 AGCTCATTTCTCTAAAAGTTTCTCAAA 57.875 29.630 0.00 0.00 0.00 2.69
69 70 8.562892 CAGCTCATTTCTCTAAAAGTTTCTCAA 58.437 33.333 0.00 0.00 0.00 3.02
70 71 7.933577 TCAGCTCATTTCTCTAAAAGTTTCTCA 59.066 33.333 0.00 0.00 0.00 3.27
71 72 8.316640 TCAGCTCATTTCTCTAAAAGTTTCTC 57.683 34.615 0.00 0.00 0.00 2.87
72 73 8.682936 TTCAGCTCATTTCTCTAAAAGTTTCT 57.317 30.769 0.00 0.00 0.00 2.52
73 74 9.392021 CTTTCAGCTCATTTCTCTAAAAGTTTC 57.608 33.333 0.00 0.00 0.00 2.78
74 75 8.907885 ACTTTCAGCTCATTTCTCTAAAAGTTT 58.092 29.630 0.00 0.00 32.22 2.66
75 76 8.457238 ACTTTCAGCTCATTTCTCTAAAAGTT 57.543 30.769 0.00 0.00 32.22 2.66
76 77 9.561069 TTACTTTCAGCTCATTTCTCTAAAAGT 57.439 29.630 0.00 0.00 37.90 2.66
79 80 9.778741 TCTTTACTTTCAGCTCATTTCTCTAAA 57.221 29.630 0.00 0.00 0.00 1.85
80 81 9.778741 TTCTTTACTTTCAGCTCATTTCTCTAA 57.221 29.630 0.00 0.00 0.00 2.10
81 82 9.950496 ATTCTTTACTTTCAGCTCATTTCTCTA 57.050 29.630 0.00 0.00 0.00 2.43
82 83 8.860780 ATTCTTTACTTTCAGCTCATTTCTCT 57.139 30.769 0.00 0.00 0.00 3.10
83 84 7.902403 CGATTCTTTACTTTCAGCTCATTTCTC 59.098 37.037 0.00 0.00 0.00 2.87
84 85 7.389053 ACGATTCTTTACTTTCAGCTCATTTCT 59.611 33.333 0.00 0.00 0.00 2.52
85 86 7.479916 CACGATTCTTTACTTTCAGCTCATTTC 59.520 37.037 0.00 0.00 0.00 2.17
86 87 7.041098 ACACGATTCTTTACTTTCAGCTCATTT 60.041 33.333 0.00 0.00 0.00 2.32
87 88 6.428159 ACACGATTCTTTACTTTCAGCTCATT 59.572 34.615 0.00 0.00 0.00 2.57
88 89 5.934625 ACACGATTCTTTACTTTCAGCTCAT 59.065 36.000 0.00 0.00 0.00 2.90
89 90 5.177511 CACACGATTCTTTACTTTCAGCTCA 59.822 40.000 0.00 0.00 0.00 4.26
90 91 5.177696 ACACACGATTCTTTACTTTCAGCTC 59.822 40.000 0.00 0.00 0.00 4.09
91 92 5.057149 ACACACGATTCTTTACTTTCAGCT 58.943 37.500 0.00 0.00 0.00 4.24
92 93 5.344207 ACACACGATTCTTTACTTTCAGC 57.656 39.130 0.00 0.00 0.00 4.26
93 94 6.422701 TGGTACACACGATTCTTTACTTTCAG 59.577 38.462 0.00 0.00 0.00 3.02
94 95 6.282167 TGGTACACACGATTCTTTACTTTCA 58.718 36.000 0.00 0.00 0.00 2.69
95 96 6.774354 TGGTACACACGATTCTTTACTTTC 57.226 37.500 0.00 0.00 0.00 2.62
96 97 7.556733 TTTGGTACACACGATTCTTTACTTT 57.443 32.000 0.00 0.00 39.29 2.66
97 98 7.556733 TTTTGGTACACACGATTCTTTACTT 57.443 32.000 0.00 0.00 39.29 2.24
98 99 6.293244 GCTTTTGGTACACACGATTCTTTACT 60.293 38.462 0.00 0.00 39.29 2.24
99 100 5.849604 GCTTTTGGTACACACGATTCTTTAC 59.150 40.000 0.00 0.00 39.29 2.01
100 101 5.761234 AGCTTTTGGTACACACGATTCTTTA 59.239 36.000 0.00 0.00 39.29 1.85
101 102 4.578928 AGCTTTTGGTACACACGATTCTTT 59.421 37.500 0.00 0.00 39.29 2.52
102 103 4.134563 AGCTTTTGGTACACACGATTCTT 58.865 39.130 0.00 0.00 39.29 2.52
103 104 3.740115 AGCTTTTGGTACACACGATTCT 58.260 40.909 0.00 0.00 39.29 2.40
104 105 4.483476 AAGCTTTTGGTACACACGATTC 57.517 40.909 0.00 0.00 39.29 2.52
105 106 4.911514 AAAGCTTTTGGTACACACGATT 57.088 36.364 5.69 0.00 39.29 3.34
106 107 5.619086 GCATAAAGCTTTTGGTACACACGAT 60.619 40.000 18.47 0.00 38.27 3.73
107 108 4.319911 GCATAAAGCTTTTGGTACACACGA 60.320 41.667 18.47 0.00 38.27 4.35
108 109 3.911964 GCATAAAGCTTTTGGTACACACG 59.088 43.478 18.47 0.00 38.27 4.49
109 110 4.865776 TGCATAAAGCTTTTGGTACACAC 58.134 39.130 18.47 2.43 45.94 3.82
110 111 4.824537 TCTGCATAAAGCTTTTGGTACACA 59.175 37.500 18.47 5.89 45.94 3.72
111 112 5.154222 GTCTGCATAAAGCTTTTGGTACAC 58.846 41.667 18.47 4.05 45.94 2.90
112 113 4.083537 CGTCTGCATAAAGCTTTTGGTACA 60.084 41.667 18.47 8.24 45.94 2.90
113 114 4.403453 CGTCTGCATAAAGCTTTTGGTAC 58.597 43.478 18.47 7.83 45.94 3.34
114 115 3.119990 GCGTCTGCATAAAGCTTTTGGTA 60.120 43.478 18.47 8.54 45.94 3.25
115 116 2.351738 GCGTCTGCATAAAGCTTTTGGT 60.352 45.455 18.47 1.17 45.94 3.67
116 117 2.095059 AGCGTCTGCATAAAGCTTTTGG 60.095 45.455 18.47 10.97 46.23 3.28
117 118 3.207474 AGCGTCTGCATAAAGCTTTTG 57.793 42.857 18.47 15.45 46.23 2.44
118 119 3.667960 CGAAGCGTCTGCATAAAGCTTTT 60.668 43.478 18.47 2.49 46.56 2.27
119 120 2.159653 CGAAGCGTCTGCATAAAGCTTT 60.160 45.455 17.30 17.30 46.56 3.51
121 122 1.002366 CGAAGCGTCTGCATAAAGCT 58.998 50.000 4.25 4.25 46.23 3.74
122 123 0.999406 TCGAAGCGTCTGCATAAAGC 59.001 50.000 0.00 0.00 46.23 3.51
123 124 2.598439 GCATCGAAGCGTCTGCATAAAG 60.598 50.000 8.62 0.00 46.23 1.85
124 125 1.327460 GCATCGAAGCGTCTGCATAAA 59.673 47.619 8.62 0.00 46.23 1.40
125 126 0.930310 GCATCGAAGCGTCTGCATAA 59.070 50.000 8.62 0.00 46.23 1.90
126 127 0.179113 TGCATCGAAGCGTCTGCATA 60.179 50.000 11.53 0.00 46.23 3.14
127 128 1.426816 CTGCATCGAAGCGTCTGCAT 61.427 55.000 14.98 0.00 46.23 3.96
128 129 2.048316 TGCATCGAAGCGTCTGCA 60.048 55.556 11.53 11.53 46.23 4.41
129 130 1.630244 AACTGCATCGAAGCGTCTGC 61.630 55.000 8.26 3.72 43.24 4.26
130 131 0.792640 AAACTGCATCGAAGCGTCTG 59.207 50.000 8.26 1.13 37.31 3.51
131 132 1.512926 AAAACTGCATCGAAGCGTCT 58.487 45.000 8.26 0.00 37.31 4.18
132 133 3.658351 ATAAAACTGCATCGAAGCGTC 57.342 42.857 8.26 0.00 37.31 5.19
133 134 3.308866 GGTATAAAACTGCATCGAAGCGT 59.691 43.478 8.26 6.25 37.31 5.07
134 135 3.303132 GGGTATAAAACTGCATCGAAGCG 60.303 47.826 8.26 5.61 37.31 4.68
135 136 3.877508 AGGGTATAAAACTGCATCGAAGC 59.122 43.478 5.52 5.52 0.00 3.86
136 137 4.209288 CGAGGGTATAAAACTGCATCGAAG 59.791 45.833 0.00 0.00 0.00 3.79
137 138 4.116961 CGAGGGTATAAAACTGCATCGAA 58.883 43.478 0.00 0.00 0.00 3.71
138 139 3.382227 TCGAGGGTATAAAACTGCATCGA 59.618 43.478 0.00 0.00 34.62 3.59
139 140 3.713288 TCGAGGGTATAAAACTGCATCG 58.287 45.455 0.00 0.00 0.00 3.84
140 141 4.058817 CCTCGAGGGTATAAAACTGCATC 58.941 47.826 24.62 0.00 0.00 3.91
141 142 4.073293 CCTCGAGGGTATAAAACTGCAT 57.927 45.455 24.62 0.00 0.00 3.96
142 143 3.536956 CCTCGAGGGTATAAAACTGCA 57.463 47.619 24.62 0.00 0.00 4.41
153 154 7.668469 ATTTAGTAAAATCAAAACCTCGAGGGT 59.332 33.333 34.04 27.64 39.48 4.34
154 155 7.443259 TTTAGTAAAATCAAAACCTCGAGGG 57.557 36.000 34.04 17.14 40.27 4.30
155 156 9.908152 AAATTTAGTAAAATCAAAACCTCGAGG 57.092 29.630 30.11 30.11 34.12 4.63
166 167 8.447833 CGCTCACCACTAAATTTAGTAAAATCA 58.552 33.333 26.38 10.70 41.82 2.57
167 168 8.448615 ACGCTCACCACTAAATTTAGTAAAATC 58.551 33.333 26.38 14.67 41.82 2.17
168 169 8.331730 ACGCTCACCACTAAATTTAGTAAAAT 57.668 30.769 26.38 12.13 41.82 1.82
169 170 7.733402 ACGCTCACCACTAAATTTAGTAAAA 57.267 32.000 26.38 13.59 41.82 1.52
173 174 9.439500 TTTTATACGCTCACCACTAAATTTAGT 57.561 29.630 22.49 22.49 44.42 2.24
179 180 9.439500 AGTTATTTTTATACGCTCACCACTAAA 57.561 29.630 0.00 0.00 0.00 1.85
180 181 9.439500 AAGTTATTTTTATACGCTCACCACTAA 57.561 29.630 0.00 0.00 0.00 2.24
181 182 9.439500 AAAGTTATTTTTATACGCTCACCACTA 57.561 29.630 0.00 0.00 0.00 2.74
182 183 7.916914 AAGTTATTTTTATACGCTCACCACT 57.083 32.000 0.00 0.00 0.00 4.00
183 184 8.231837 TGAAAGTTATTTTTATACGCTCACCAC 58.768 33.333 0.00 0.00 0.00 4.16
184 185 8.325421 TGAAAGTTATTTTTATACGCTCACCA 57.675 30.769 0.00 0.00 0.00 4.17
185 186 9.615295 TTTGAAAGTTATTTTTATACGCTCACC 57.385 29.630 0.00 0.00 0.00 4.02
189 190 9.953697 TGTGTTTGAAAGTTATTTTTATACGCT 57.046 25.926 0.00 0.00 32.17 5.07
206 207 9.665719 TGCTAGATATTGACTAATGTGTTTGAA 57.334 29.630 0.00 0.00 0.00 2.69
207 208 9.836864 ATGCTAGATATTGACTAATGTGTTTGA 57.163 29.630 0.00 0.00 0.00 2.69
213 214 9.935241 CCAGTTATGCTAGATATTGACTAATGT 57.065 33.333 0.00 0.00 0.00 2.71
214 215 8.877779 GCCAGTTATGCTAGATATTGACTAATG 58.122 37.037 0.00 0.00 0.00 1.90
215 216 8.820831 AGCCAGTTATGCTAGATATTGACTAAT 58.179 33.333 0.00 0.00 37.28 1.73
216 217 8.090831 CAGCCAGTTATGCTAGATATTGACTAA 58.909 37.037 0.00 0.00 36.81 2.24
217 218 7.451566 TCAGCCAGTTATGCTAGATATTGACTA 59.548 37.037 0.00 0.00 36.81 2.59
218 219 6.268617 TCAGCCAGTTATGCTAGATATTGACT 59.731 38.462 0.00 0.00 36.81 3.41
219 220 6.459066 TCAGCCAGTTATGCTAGATATTGAC 58.541 40.000 0.00 0.00 36.81 3.18
220 221 6.670695 TCAGCCAGTTATGCTAGATATTGA 57.329 37.500 0.00 0.00 36.81 2.57
221 222 7.734924 TTTCAGCCAGTTATGCTAGATATTG 57.265 36.000 0.00 0.00 36.81 1.90
223 224 9.610705 CATATTTCAGCCAGTTATGCTAGATAT 57.389 33.333 0.00 0.00 36.81 1.63
224 225 8.597167 ACATATTTCAGCCAGTTATGCTAGATA 58.403 33.333 0.00 0.00 36.81 1.98
225 226 7.456725 ACATATTTCAGCCAGTTATGCTAGAT 58.543 34.615 0.00 0.00 36.81 1.98
226 227 6.830912 ACATATTTCAGCCAGTTATGCTAGA 58.169 36.000 0.00 0.00 36.81 2.43
227 228 7.308229 GGAACATATTTCAGCCAGTTATGCTAG 60.308 40.741 0.00 0.00 36.81 3.42
228 229 6.486657 GGAACATATTTCAGCCAGTTATGCTA 59.513 38.462 0.00 0.00 36.81 3.49
229 230 5.300286 GGAACATATTTCAGCCAGTTATGCT 59.700 40.000 0.00 0.00 40.41 3.79
230 231 5.067674 TGGAACATATTTCAGCCAGTTATGC 59.932 40.000 0.00 0.00 0.00 3.14
231 232 6.698008 TGGAACATATTTCAGCCAGTTATG 57.302 37.500 0.00 0.00 0.00 1.90
249 250 8.816640 ACACACTTTTAATTCATTGATGGAAC 57.183 30.769 0.00 0.00 0.00 3.62
250 251 9.474920 GAACACACTTTTAATTCATTGATGGAA 57.525 29.630 0.00 0.00 0.00 3.53
251 252 8.637099 TGAACACACTTTTAATTCATTGATGGA 58.363 29.630 0.00 0.00 0.00 3.41
252 253 8.815141 TGAACACACTTTTAATTCATTGATGG 57.185 30.769 0.00 0.00 0.00 3.51
280 281 8.846211 GCACTATGCCTGGTATTTAATAAAGAA 58.154 33.333 1.68 0.00 37.42 2.52
281 282 7.996066 TGCACTATGCCTGGTATTTAATAAAGA 59.004 33.333 1.68 0.00 44.23 2.52
282 283 8.165239 TGCACTATGCCTGGTATTTAATAAAG 57.835 34.615 1.68 0.00 44.23 1.85
283 284 8.575589 CATGCACTATGCCTGGTATTTAATAAA 58.424 33.333 1.68 0.00 44.23 1.40
284 285 8.109705 CATGCACTATGCCTGGTATTTAATAA 57.890 34.615 1.68 0.00 44.23 1.40
285 286 7.686438 CATGCACTATGCCTGGTATTTAATA 57.314 36.000 1.68 0.00 44.23 0.98
286 287 6.579666 CATGCACTATGCCTGGTATTTAAT 57.420 37.500 1.68 0.00 44.23 1.40
295 296 4.246053 TGCCATGCACTATGCCTG 57.754 55.556 0.00 0.00 44.23 4.85
304 305 3.364460 AGGTAGTTTATGTGCCATGCA 57.636 42.857 0.00 0.00 35.60 3.96
305 306 5.995282 TGTATAGGTAGTTTATGTGCCATGC 59.005 40.000 0.00 0.00 0.00 4.06
306 307 7.217200 AGTGTATAGGTAGTTTATGTGCCATG 58.783 38.462 0.00 0.00 0.00 3.66
307 308 7.374975 AGTGTATAGGTAGTTTATGTGCCAT 57.625 36.000 0.00 0.00 0.00 4.40
308 309 6.801718 AGTGTATAGGTAGTTTATGTGCCA 57.198 37.500 0.00 0.00 0.00 4.92
309 310 7.767198 TGAAAGTGTATAGGTAGTTTATGTGCC 59.233 37.037 0.00 0.00 0.00 5.01
310 311 8.712285 TGAAAGTGTATAGGTAGTTTATGTGC 57.288 34.615 0.00 0.00 0.00 4.57
330 331 8.091449 AGATGTAGAAAGGACAACTACTGAAAG 58.909 37.037 0.00 0.00 37.80 2.62
331 332 7.872993 CAGATGTAGAAAGGACAACTACTGAAA 59.127 37.037 0.00 0.00 37.80 2.69
332 333 7.378966 CAGATGTAGAAAGGACAACTACTGAA 58.621 38.462 0.00 0.00 37.80 3.02
333 334 6.071334 CCAGATGTAGAAAGGACAACTACTGA 60.071 42.308 0.00 0.00 37.80 3.41
334 335 6.102663 CCAGATGTAGAAAGGACAACTACTG 58.897 44.000 0.00 0.00 37.80 2.74
335 336 5.337652 GCCAGATGTAGAAAGGACAACTACT 60.338 44.000 0.00 0.00 37.80 2.57
336 337 4.870991 GCCAGATGTAGAAAGGACAACTAC 59.129 45.833 0.00 0.00 37.55 2.73
337 338 4.777896 AGCCAGATGTAGAAAGGACAACTA 59.222 41.667 0.00 0.00 29.71 2.24
338 339 3.584848 AGCCAGATGTAGAAAGGACAACT 59.415 43.478 0.00 0.00 30.75 3.16
339 340 3.935828 GAGCCAGATGTAGAAAGGACAAC 59.064 47.826 0.00 0.00 0.00 3.32
340 341 3.055094 GGAGCCAGATGTAGAAAGGACAA 60.055 47.826 0.00 0.00 0.00 3.18
341 342 2.501723 GGAGCCAGATGTAGAAAGGACA 59.498 50.000 0.00 0.00 0.00 4.02
342 343 2.158885 GGGAGCCAGATGTAGAAAGGAC 60.159 54.545 0.00 0.00 0.00 3.85
343 344 2.119495 GGGAGCCAGATGTAGAAAGGA 58.881 52.381 0.00 0.00 0.00 3.36
344 345 1.141858 GGGGAGCCAGATGTAGAAAGG 59.858 57.143 0.00 0.00 0.00 3.11
345 346 1.839994 TGGGGAGCCAGATGTAGAAAG 59.160 52.381 0.00 0.00 0.00 2.62
346 347 1.839994 CTGGGGAGCCAGATGTAGAAA 59.160 52.381 0.00 0.00 39.96 2.52
347 348 1.500474 CTGGGGAGCCAGATGTAGAA 58.500 55.000 0.00 0.00 39.96 2.10
348 349 1.050988 GCTGGGGAGCCAGATGTAGA 61.051 60.000 0.00 0.00 39.96 2.59
349 350 1.449353 GCTGGGGAGCCAGATGTAG 59.551 63.158 0.00 0.00 39.96 2.74
350 351 2.434843 CGCTGGGGAGCCAGATGTA 61.435 63.158 0.00 0.00 39.96 2.29
351 352 3.790437 CGCTGGGGAGCCAGATGT 61.790 66.667 0.00 0.00 39.96 3.06
352 353 2.826777 AAACGCTGGGGAGCCAGATG 62.827 60.000 0.00 0.00 39.96 2.90
353 354 1.271840 TAAACGCTGGGGAGCCAGAT 61.272 55.000 0.00 0.00 39.96 2.90
354 355 1.271840 ATAAACGCTGGGGAGCCAGA 61.272 55.000 0.00 0.00 39.96 3.86
355 356 0.815615 GATAAACGCTGGGGAGCCAG 60.816 60.000 0.00 0.00 40.47 4.85
356 357 1.223487 GATAAACGCTGGGGAGCCA 59.777 57.895 0.00 0.00 0.00 4.75
357 358 0.179018 ATGATAAACGCTGGGGAGCC 60.179 55.000 0.00 0.00 0.00 4.70
358 359 2.417719 CTATGATAAACGCTGGGGAGC 58.582 52.381 0.00 0.00 0.00 4.70
359 360 2.872038 GCCTATGATAAACGCTGGGGAG 60.872 54.545 0.00 0.00 0.00 4.30
360 361 1.071699 GCCTATGATAAACGCTGGGGA 59.928 52.381 0.00 0.00 0.00 4.81
361 362 1.202758 TGCCTATGATAAACGCTGGGG 60.203 52.381 0.00 0.00 0.00 4.96
362 363 2.254546 TGCCTATGATAAACGCTGGG 57.745 50.000 0.00 0.00 0.00 4.45
363 364 3.402110 TCATGCCTATGATAAACGCTGG 58.598 45.455 0.00 0.00 38.37 4.85
371 372 8.497730 GGTGCACCAATTATCATGCCTATGATA 61.498 40.741 31.23 6.01 42.54 2.15
372 373 7.750934 GGTGCACCAATTATCATGCCTATGAT 61.751 42.308 31.23 7.78 44.40 2.45
373 374 4.520111 GTGCACCAATTATCATGCCTATGA 59.480 41.667 5.22 0.00 46.67 2.15
374 375 4.321452 GGTGCACCAATTATCATGCCTATG 60.321 45.833 31.23 0.00 37.26 2.23
375 376 3.828451 GGTGCACCAATTATCATGCCTAT 59.172 43.478 31.23 0.00 37.26 2.57
376 377 3.221771 GGTGCACCAATTATCATGCCTA 58.778 45.455 31.23 0.00 37.26 3.93
377 378 2.034124 GGTGCACCAATTATCATGCCT 58.966 47.619 31.23 0.00 37.26 4.75
378 379 1.755959 TGGTGCACCAATTATCATGCC 59.244 47.619 36.10 5.03 44.35 4.40
379 380 2.689471 TCTGGTGCACCAATTATCATGC 59.311 45.455 36.71 7.19 46.97 4.06
380 381 3.317149 CCTCTGGTGCACCAATTATCATG 59.683 47.826 36.71 23.08 46.97 3.07
381 382 3.053395 ACCTCTGGTGCACCAATTATCAT 60.053 43.478 36.71 17.15 46.97 2.45
382 383 2.308570 ACCTCTGGTGCACCAATTATCA 59.691 45.455 36.71 14.59 46.97 2.15
383 384 3.004752 ACCTCTGGTGCACCAATTATC 57.995 47.619 36.71 10.03 46.97 1.75
384 385 3.265737 TGTACCTCTGGTGCACCAATTAT 59.734 43.478 36.71 24.57 46.97 1.28
385 386 2.640332 TGTACCTCTGGTGCACCAATTA 59.360 45.455 36.71 23.92 46.97 1.40
386 387 1.423541 TGTACCTCTGGTGCACCAATT 59.576 47.619 36.71 22.96 46.97 2.32
387 388 1.064003 TGTACCTCTGGTGCACCAAT 58.936 50.000 36.71 24.24 46.97 3.16
388 389 2.534038 TGTACCTCTGGTGCACCAA 58.466 52.632 36.71 25.46 46.97 3.67
389 390 4.304432 TGTACCTCTGGTGCACCA 57.696 55.556 35.49 35.49 42.97 4.17
397 398 6.734783 GAGGATCAGGAAGGATGTACCTCTG 61.735 52.000 0.00 0.00 41.55 3.35
398 399 4.694186 GAGGATCAGGAAGGATGTACCTCT 60.694 50.000 0.00 0.00 41.55 3.69
399 400 3.576550 GAGGATCAGGAAGGATGTACCTC 59.423 52.174 0.00 0.00 41.55 3.85
400 401 3.208692 AGAGGATCAGGAAGGATGTACCT 59.791 47.826 0.00 0.00 45.72 3.08
401 402 3.576550 GAGAGGATCAGGAAGGATGTACC 59.423 52.174 0.00 0.00 37.82 3.34
402 403 3.254657 CGAGAGGATCAGGAAGGATGTAC 59.745 52.174 0.00 0.00 37.82 2.90
403 404 3.117474 ACGAGAGGATCAGGAAGGATGTA 60.117 47.826 0.00 0.00 37.82 2.29
404 405 2.315176 CGAGAGGATCAGGAAGGATGT 58.685 52.381 0.00 0.00 37.82 3.06
405 406 2.035704 CACGAGAGGATCAGGAAGGATG 59.964 54.545 0.00 0.00 37.82 3.51
406 407 2.315176 CACGAGAGGATCAGGAAGGAT 58.685 52.381 0.00 0.00 37.82 3.24
407 408 1.006043 ACACGAGAGGATCAGGAAGGA 59.994 52.381 0.00 0.00 37.82 3.36
408 409 1.479709 ACACGAGAGGATCAGGAAGG 58.520 55.000 0.00 0.00 37.82 3.46
409 410 3.948473 TCTAACACGAGAGGATCAGGAAG 59.052 47.826 0.00 0.00 37.82 3.46
410 411 3.964411 TCTAACACGAGAGGATCAGGAA 58.036 45.455 0.00 0.00 37.82 3.36
411 412 3.646736 TCTAACACGAGAGGATCAGGA 57.353 47.619 0.00 0.00 37.82 3.86
412 413 4.720649 TTTCTAACACGAGAGGATCAGG 57.279 45.455 0.00 0.00 37.82 3.86
413 414 5.578727 CCTTTTTCTAACACGAGAGGATCAG 59.421 44.000 0.00 0.00 37.82 2.90
414 415 5.479306 CCTTTTTCTAACACGAGAGGATCA 58.521 41.667 0.00 0.00 37.82 2.92
415 416 4.330347 GCCTTTTTCTAACACGAGAGGATC 59.670 45.833 0.00 0.00 0.00 3.36
416 417 4.254492 GCCTTTTTCTAACACGAGAGGAT 58.746 43.478 0.00 0.00 0.00 3.24
417 418 3.556423 GGCCTTTTTCTAACACGAGAGGA 60.556 47.826 0.00 0.00 0.00 3.71
418 419 2.742589 GGCCTTTTTCTAACACGAGAGG 59.257 50.000 0.00 0.00 0.00 3.69
419 420 3.399330 TGGCCTTTTTCTAACACGAGAG 58.601 45.455 3.32 0.00 0.00 3.20
420 421 3.478857 TGGCCTTTTTCTAACACGAGA 57.521 42.857 3.32 0.00 0.00 4.04
421 422 3.127030 GGATGGCCTTTTTCTAACACGAG 59.873 47.826 3.32 0.00 0.00 4.18
422 423 3.078837 GGATGGCCTTTTTCTAACACGA 58.921 45.455 3.32 0.00 0.00 4.35
423 424 2.159572 CGGATGGCCTTTTTCTAACACG 60.160 50.000 3.32 0.00 0.00 4.49
424 425 3.078837 TCGGATGGCCTTTTTCTAACAC 58.921 45.455 3.32 0.00 0.00 3.32
425 426 3.426787 TCGGATGGCCTTTTTCTAACA 57.573 42.857 3.32 0.00 0.00 2.41
426 427 3.756963 AGTTCGGATGGCCTTTTTCTAAC 59.243 43.478 3.32 0.06 0.00 2.34
427 428 4.028993 AGTTCGGATGGCCTTTTTCTAA 57.971 40.909 3.32 0.00 0.00 2.10
428 429 3.713826 AGTTCGGATGGCCTTTTTCTA 57.286 42.857 3.32 0.00 0.00 2.10
429 430 2.586648 AGTTCGGATGGCCTTTTTCT 57.413 45.000 3.32 0.00 0.00 2.52
430 431 2.556622 TGAAGTTCGGATGGCCTTTTTC 59.443 45.455 3.32 0.00 0.00 2.29
431 432 2.593026 TGAAGTTCGGATGGCCTTTTT 58.407 42.857 3.32 0.00 0.00 1.94
432 433 2.286365 TGAAGTTCGGATGGCCTTTT 57.714 45.000 3.32 0.00 0.00 2.27
433 434 2.514458 ATGAAGTTCGGATGGCCTTT 57.486 45.000 3.32 0.00 0.00 3.11
434 435 3.864789 ATATGAAGTTCGGATGGCCTT 57.135 42.857 3.32 0.00 0.00 4.35
435 436 3.136443 TGAATATGAAGTTCGGATGGCCT 59.864 43.478 3.32 0.00 0.00 5.19
436 437 3.476552 TGAATATGAAGTTCGGATGGCC 58.523 45.455 0.00 0.00 0.00 5.36
445 446 3.214328 GGGCGGTGATGAATATGAAGTT 58.786 45.455 0.00 0.00 0.00 2.66
448 449 2.948979 GTTGGGCGGTGATGAATATGAA 59.051 45.455 0.00 0.00 0.00 2.57
455 456 1.773856 TTCCTGTTGGGCGGTGATGA 61.774 55.000 0.00 0.00 34.39 2.92
470 471 4.803452 TGGTGGTCTTTCTTGATTTTCCT 58.197 39.130 0.00 0.00 0.00 3.36
471 472 5.529581 TTGGTGGTCTTTCTTGATTTTCC 57.470 39.130 0.00 0.00 0.00 3.13
472 473 9.143631 CATATTTGGTGGTCTTTCTTGATTTTC 57.856 33.333 0.00 0.00 0.00 2.29
479 480 5.313712 ACGTCATATTTGGTGGTCTTTCTT 58.686 37.500 0.00 0.00 0.00 2.52
493 494 1.299926 GGCGCGAGGACGTCATATT 60.300 57.895 18.91 0.00 41.98 1.28
499 500 2.737376 GAAAAGGCGCGAGGACGT 60.737 61.111 12.10 0.00 41.98 4.34
506 507 2.546778 TCAAGTATAGGAAAAGGCGCG 58.453 47.619 0.00 0.00 0.00 6.86
576 582 8.908903 GTGGTTTGTATTTATGGATGGTCAATA 58.091 33.333 0.00 0.00 0.00 1.90
621 627 4.268884 GTCTTCGTATTTGCTGCCTCTTAG 59.731 45.833 0.00 0.00 0.00 2.18
631 638 6.016111 GCAAACTTAGAGTCTTCGTATTTGC 58.984 40.000 17.02 17.02 41.58 3.68
638 646 4.051922 AGTGTGCAAACTTAGAGTCTTCG 58.948 43.478 2.82 0.00 0.00 3.79
656 664 0.176680 CGAGCCTGCCTTGATAGTGT 59.823 55.000 0.00 0.00 0.00 3.55
664 672 1.748122 CATGAAGCGAGCCTGCCTT 60.748 57.895 0.00 0.00 34.65 4.35
667 675 3.407657 CTCATGAAGCGAGCCTGC 58.592 61.111 0.00 0.00 0.00 4.85
726 735 4.017380 TCGTTTTGCGCTGTTTTCTAAA 57.983 36.364 9.73 0.00 41.07 1.85
730 739 1.120437 CCTCGTTTTGCGCTGTTTTC 58.880 50.000 9.73 0.00 41.07 2.29
763 772 4.764308 GGCTTCTCCATCTTCAACTCTTTT 59.236 41.667 0.00 0.00 34.01 2.27
800 834 3.846360 ACGATGTCCAGTAGTTGTAAGC 58.154 45.455 0.00 0.00 0.00 3.09
806 840 3.353557 TCTGCTACGATGTCCAGTAGTT 58.646 45.455 0.00 0.00 41.59 2.24
826 860 1.387295 GGCAGCCCACATAGCCTTTC 61.387 60.000 0.00 0.00 43.70 2.62
947 986 3.541632 GATTGGTTAGGAAGGCGATTGA 58.458 45.455 0.00 0.00 0.00 2.57
1024 1067 1.636003 GGGTTGGAGGAGGAGAAATGT 59.364 52.381 0.00 0.00 0.00 2.71
1163 1209 4.908687 TGCAGGTGTCGCGCACTT 62.909 61.111 25.19 18.81 46.86 3.16
1164 1210 4.908687 TTGCAGGTGTCGCGCACT 62.909 61.111 25.19 13.53 46.86 4.40
1575 1621 6.458615 GCACATTCACTGTCACATTGCATATA 60.459 38.462 0.00 0.00 35.29 0.86
1678 1724 7.281040 CCTTGATAAGGCAATTGTATGTGAT 57.719 36.000 7.40 0.00 42.78 3.06
1717 1763 2.359975 CGCCTCAACAACCCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
2115 2177 0.240945 GGCAGAACCCATCAACAACG 59.759 55.000 0.00 0.00 0.00 4.10
2460 2522 4.995058 TCTTTGGCCTCCCCCGGT 62.995 66.667 3.32 0.00 0.00 5.28
2769 2831 3.757493 CGAGTAAGTCTTCCACTGTACCT 59.243 47.826 0.00 0.00 34.56 3.08
2784 2846 7.877003 ACATCTTATCCAGTACATCGAGTAAG 58.123 38.462 0.00 0.00 33.72 2.34
2794 2856 7.265673 TGTCTTGCTAACATCTTATCCAGTAC 58.734 38.462 0.00 0.00 0.00 2.73
2991 3053 0.673333 TCTGGCACGCCACATTGTAG 60.673 55.000 6.67 0.00 41.89 2.74
3052 3114 3.406764 AGGTCAGCTGATTGTCAACTTC 58.593 45.455 21.47 2.16 0.00 3.01
3334 3497 3.904965 TGTGAATAGGTTGGTGACAGGTA 59.095 43.478 0.00 0.00 44.54 3.08
3663 3836 1.714541 AGAGCGTGATGAGGATGGAT 58.285 50.000 0.00 0.00 0.00 3.41
3702 3875 0.858583 CAACGAACATCTGCGTGACA 59.141 50.000 0.00 0.00 41.06 3.58
3806 3979 3.043713 TGCAAGAACGAGCGCAGG 61.044 61.111 11.47 2.47 0.00 4.85
3857 4031 4.176271 CGCATACAAGTGAGAAGATGTCA 58.824 43.478 0.00 0.00 0.00 3.58
3861 4035 4.471904 TTCCGCATACAAGTGAGAAGAT 57.528 40.909 0.00 0.00 0.00 2.40
3998 4172 1.521681 GAAAGCTATGGCGACGGCT 60.522 57.895 22.70 6.34 44.37 5.52
4059 4233 2.737180 CACAGCCACGTCCTCAGT 59.263 61.111 0.00 0.00 0.00 3.41
4118 4292 1.648720 GCAGAAGAGTGCAAACGCA 59.351 52.632 0.00 0.00 43.41 5.24
4238 4412 1.589716 GGCCAAAGCTGAGCACGAAT 61.590 55.000 7.39 0.00 39.73 3.34
4272 4446 2.968574 ACCAAGAGAAGCTCAGAGTCAA 59.031 45.455 0.00 0.00 32.06 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.