Multiple sequence alignment - TraesCS5B01G355100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G355100 chr5B 100.000 4774 0 0 1 4774 534366553 534361780 0.000000e+00 8817
1 TraesCS5B01G355100 chr5A 90.457 3762 205 70 732 4441 555568563 555564904 0.000000e+00 4817
2 TraesCS5B01G355100 chr5A 85.154 357 43 10 7 357 555569369 555569017 1.630000e-94 357
3 TraesCS5B01G355100 chr5A 95.954 173 3 2 557 726 555568773 555568602 1.310000e-70 278
4 TraesCS5B01G355100 chr5D 92.048 2754 120 45 550 3265 439678745 439676053 0.000000e+00 3781
5 TraesCS5B01G355100 chr5D 91.748 1236 68 16 3225 4442 439676127 439674908 0.000000e+00 1687
6 TraesCS5B01G355100 chr5D 85.315 143 19 2 4446 4587 439674867 439674726 3.850000e-31 147
7 TraesCS5B01G355100 chr4D 86.503 163 21 1 4613 4774 175087304 175087466 1.370000e-40 178
8 TraesCS5B01G355100 chr2B 85.030 167 22 2 1035 1198 316052097 316051931 2.960000e-37 167
9 TraesCS5B01G355100 chr2D 84.431 167 23 2 1035 1198 288615814 288615648 1.370000e-35 161
10 TraesCS5B01G355100 chr2A 82.635 167 26 2 1035 1198 348093432 348093266 1.380000e-30 145
11 TraesCS5B01G355100 chr1A 88.793 116 11 2 4660 4774 575509178 575509292 1.790000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G355100 chr5B 534361780 534366553 4773 True 8817.000000 8817 100.000000 1 4774 1 chr5B.!!$R1 4773
1 TraesCS5B01G355100 chr5A 555564904 555569369 4465 True 1817.333333 4817 90.521667 7 4441 3 chr5A.!!$R1 4434
2 TraesCS5B01G355100 chr5D 439674726 439678745 4019 True 1871.666667 3781 89.703667 550 4587 3 chr5D.!!$R1 4037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 450 0.454600 TCCGCTATGAGTCGGTGTTC 59.545 55.0 0.47 0.00 45.44 3.18 F
431 498 0.524392 CGCTTCAGTGCCTCTAGTCG 60.524 60.0 0.00 0.00 0.00 4.18 F
1612 1750 0.522705 GCATTGTGCGATCTGTGCAG 60.523 55.0 0.00 0.00 44.21 4.41 F
2973 3134 0.383231 CGTCATAGGACCGGTGTACC 59.617 60.0 14.63 7.42 41.13 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1732 0.098200 CCTGCACAGATCGCACAATG 59.902 55.0 0.00 0.0 35.08 2.82 R
2403 2543 0.032540 GGCAAGTGTTGGGAGCAAAG 59.967 55.0 0.00 0.0 0.00 2.77 R
3083 3245 0.245539 ATCGTTGTCGGTACTGGGTG 59.754 55.0 0.85 0.0 37.69 4.61 R
4644 4882 0.032813 ATCTGGCCCATGGTTTCTGG 60.033 55.0 11.73 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.617290 TTTTTCAGAGGGACTTAAATGAGTAC 57.383 34.615 0.00 0.00 41.55 2.73
45 46 8.195436 CAGAGGGACTTAAATGAGTACGAAATA 58.805 37.037 0.00 0.00 41.55 1.40
64 66 7.961283 ACGAAATATTAGAAAGAAAGCGGAAAC 59.039 33.333 0.00 0.00 0.00 2.78
90 92 8.509690 CCGATAACGTCAAATATTACTAGAGGA 58.490 37.037 0.00 0.00 37.88 3.71
106 108 7.604657 ACTAGAGGAACATAAATGAGTAGGG 57.395 40.000 0.00 0.00 0.00 3.53
137 139 9.925268 TTAGAATAAAAAGAAATCGATAACGGC 57.075 29.630 0.00 0.00 40.21 5.68
139 141 3.668596 AAAAGAAATCGATAACGGCGG 57.331 42.857 13.24 0.00 40.21 6.13
143 145 3.572584 AGAAATCGATAACGGCGGATAC 58.427 45.455 13.24 0.00 40.21 2.24
150 152 4.333649 TCGATAACGGCGGATACTATTAGG 59.666 45.833 13.24 0.00 40.21 2.69
163 165 9.734984 CGGATACTATTAGGGGAAACATAAATT 57.265 33.333 0.00 0.00 0.00 1.82
193 195 7.299586 TGAAATATTAGAAACCAAAACGGACG 58.700 34.615 0.00 0.00 38.63 4.79
217 219 8.478527 CGCAAGTAACGTTGAAAGTAAATTTA 57.521 30.769 11.99 0.00 0.00 1.40
219 221 8.898792 GCAAGTAACGTTGAAAGTAAATTTAGG 58.101 33.333 11.99 0.00 0.00 2.69
239 241 9.715121 ATTTAGGTCGAATTCAAAGTAGTACAA 57.285 29.630 6.22 0.00 0.00 2.41
251 253 8.867112 TCAAAGTAGTACAAATATAGAAGCGG 57.133 34.615 2.52 0.00 0.00 5.52
254 256 6.746120 AGTAGTACAAATATAGAAGCGGGTG 58.254 40.000 2.52 0.00 0.00 4.61
269 271 1.338769 CGGGTGTTTGTAGGAGAAGGG 60.339 57.143 0.00 0.00 0.00 3.95
274 276 4.277672 GGTGTTTGTAGGAGAAGGGAAAAC 59.722 45.833 0.00 0.00 0.00 2.43
339 344 5.282510 TGTAAAATAACACGCCAAAACCAG 58.717 37.500 0.00 0.00 0.00 4.00
378 444 2.579207 TCCTTTTCCGCTATGAGTCG 57.421 50.000 0.00 0.00 0.00 4.18
384 450 0.454600 TCCGCTATGAGTCGGTGTTC 59.545 55.000 0.47 0.00 45.44 3.18
392 459 2.139917 TGAGTCGGTGTTCCATTTTCG 58.860 47.619 0.00 0.00 0.00 3.46
396 463 0.724453 CGGTGTTCCATTTTCGCACG 60.724 55.000 0.00 0.00 0.00 5.34
410 477 3.204597 TCGCACGAAAAGTTTGTGTTT 57.795 38.095 9.52 0.00 36.04 2.83
411 478 3.566523 TCGCACGAAAAGTTTGTGTTTT 58.433 36.364 9.52 0.00 36.04 2.43
418 485 5.755330 GAAAAGTTTGTGTTTTCGCTTCA 57.245 34.783 0.00 0.00 34.97 3.02
421 488 3.758300 AGTTTGTGTTTTCGCTTCAGTG 58.242 40.909 0.00 0.00 0.00 3.66
424 491 0.663153 GTGTTTTCGCTTCAGTGCCT 59.337 50.000 0.00 0.00 0.00 4.75
425 492 0.944386 TGTTTTCGCTTCAGTGCCTC 59.056 50.000 0.00 0.00 0.00 4.70
427 494 2.224185 TGTTTTCGCTTCAGTGCCTCTA 60.224 45.455 0.00 0.00 0.00 2.43
428 495 2.370281 TTTCGCTTCAGTGCCTCTAG 57.630 50.000 0.00 0.00 0.00 2.43
429 496 1.257743 TTCGCTTCAGTGCCTCTAGT 58.742 50.000 0.00 0.00 0.00 2.57
430 497 0.811915 TCGCTTCAGTGCCTCTAGTC 59.188 55.000 0.00 0.00 0.00 2.59
431 498 0.524392 CGCTTCAGTGCCTCTAGTCG 60.524 60.000 0.00 0.00 0.00 4.18
432 499 0.528470 GCTTCAGTGCCTCTAGTCGT 59.472 55.000 0.00 0.00 0.00 4.34
434 501 1.813178 CTTCAGTGCCTCTAGTCGTCA 59.187 52.381 0.00 0.00 0.00 4.35
435 502 1.166129 TCAGTGCCTCTAGTCGTCAC 58.834 55.000 0.00 0.00 0.00 3.67
436 503 1.169577 CAGTGCCTCTAGTCGTCACT 58.830 55.000 0.00 0.00 38.40 3.41
437 504 2.027469 TCAGTGCCTCTAGTCGTCACTA 60.027 50.000 8.51 0.00 36.37 2.74
445 512 2.988570 CTAGTCGTCACTAGGTGGTCT 58.011 52.381 3.86 0.00 46.09 3.85
447 514 3.430042 AGTCGTCACTAGGTGGTCTAA 57.570 47.619 0.00 0.00 33.87 2.10
450 517 3.755378 GTCGTCACTAGGTGGTCTAAGAA 59.245 47.826 0.00 0.00 33.87 2.52
453 520 4.641094 CGTCACTAGGTGGTCTAAGAATCT 59.359 45.833 0.00 0.00 33.87 2.40
455 522 6.017770 CGTCACTAGGTGGTCTAAGAATCTAG 60.018 46.154 0.00 0.00 33.87 2.43
457 524 7.722285 GTCACTAGGTGGTCTAAGAATCTAGAT 59.278 40.741 0.00 0.00 33.87 1.98
458 525 7.721842 TCACTAGGTGGTCTAAGAATCTAGATG 59.278 40.741 5.86 0.00 33.87 2.90
459 526 7.504238 CACTAGGTGGTCTAAGAATCTAGATGT 59.496 40.741 5.86 0.00 30.74 3.06
489 556 6.654793 TTTTATTTCTGGTGTTTGTTGTGC 57.345 33.333 0.00 0.00 0.00 4.57
491 558 3.667497 TTTCTGGTGTTTGTTGTGCAA 57.333 38.095 0.00 0.00 34.87 4.08
492 559 2.645730 TCTGGTGTTTGTTGTGCAAC 57.354 45.000 8.01 8.01 41.50 4.17
493 560 1.203523 TCTGGTGTTTGTTGTGCAACC 59.796 47.619 11.90 0.00 40.46 3.77
494 561 0.969149 TGGTGTTTGTTGTGCAACCA 59.031 45.000 11.90 0.00 40.46 3.67
495 562 1.552337 TGGTGTTTGTTGTGCAACCAT 59.448 42.857 11.90 0.00 40.46 3.55
496 563 1.932511 GGTGTTTGTTGTGCAACCATG 59.067 47.619 11.90 0.00 40.46 3.66
497 564 2.417924 GGTGTTTGTTGTGCAACCATGA 60.418 45.455 11.90 0.00 40.46 3.07
498 565 3.456280 GTGTTTGTTGTGCAACCATGAT 58.544 40.909 11.90 0.00 40.46 2.45
499 566 3.870419 GTGTTTGTTGTGCAACCATGATT 59.130 39.130 11.90 0.00 40.46 2.57
500 567 3.869832 TGTTTGTTGTGCAACCATGATTG 59.130 39.130 11.90 0.00 40.46 2.67
501 568 4.118410 GTTTGTTGTGCAACCATGATTGA 58.882 39.130 3.20 0.00 40.46 2.57
502 569 4.397481 TTGTTGTGCAACCATGATTGAA 57.603 36.364 3.20 0.00 40.46 2.69
503 570 3.979948 TGTTGTGCAACCATGATTGAAG 58.020 40.909 3.20 0.00 40.46 3.02
504 571 3.635836 TGTTGTGCAACCATGATTGAAGA 59.364 39.130 3.20 0.00 40.46 2.87
505 572 4.281435 TGTTGTGCAACCATGATTGAAGAT 59.719 37.500 3.20 0.00 40.46 2.40
506 573 4.443913 TGTGCAACCATGATTGAAGATG 57.556 40.909 3.20 0.00 34.36 2.90
509 576 5.186215 TGTGCAACCATGATTGAAGATGAAT 59.814 36.000 3.20 0.00 34.36 2.57
511 578 6.694411 GTGCAACCATGATTGAAGATGAATAC 59.306 38.462 3.20 0.00 0.00 1.89
513 580 7.068962 TGCAACCATGATTGAAGATGAATACAT 59.931 33.333 3.20 0.00 39.67 2.29
529 596 6.100004 TGAATACATCAGGAGTTTTCTCGTC 58.900 40.000 0.00 0.00 42.20 4.20
531 598 7.739757 TGAATACATCAGGAGTTTTCTCGTCAA 60.740 37.037 0.00 0.00 42.20 3.18
564 631 5.240623 AGTTGCGGTGTGAATCATTAAAGAA 59.759 36.000 0.00 0.00 0.00 2.52
694 766 6.925165 ACCTGTGAATTAGCAATCAAAACAAG 59.075 34.615 0.00 0.00 0.00 3.16
726 819 3.354948 TGCATGGGATATGTATGGAGC 57.645 47.619 0.00 0.00 0.00 4.70
799 903 4.025858 GAGGCAGGCAGCTGGTGA 62.026 66.667 17.12 0.00 44.79 4.02
800 904 3.336568 AGGCAGGCAGCTGGTGAT 61.337 61.111 17.12 0.00 44.79 3.06
801 905 2.827642 GGCAGGCAGCTGGTGATC 60.828 66.667 17.12 0.00 44.79 2.92
802 906 2.827642 GCAGGCAGCTGGTGATCC 60.828 66.667 17.12 7.58 41.15 3.36
803 907 2.513204 CAGGCAGCTGGTGATCCG 60.513 66.667 17.12 0.77 36.30 4.18
1247 1377 0.548510 CCTCCCCTCATCTTGGTTCC 59.451 60.000 0.00 0.00 0.00 3.62
1253 1383 2.290323 CCCTCATCTTGGTTCCGTCTTT 60.290 50.000 0.00 0.00 0.00 2.52
1341 1478 1.149174 CCCCATCAGCCGCTATTGT 59.851 57.895 0.00 0.00 0.00 2.71
1408 1545 1.080093 GCTTTGCCGCTTTTACCCC 60.080 57.895 0.00 0.00 0.00 4.95
1422 1559 2.507407 TACCCCTGTTCCATTGCTTC 57.493 50.000 0.00 0.00 0.00 3.86
1498 1636 5.880054 TTTCTTCCAAATTCGTGATCTCC 57.120 39.130 0.00 0.00 0.00 3.71
1553 1691 2.955660 TGCAAACTGGGACCAAAACTAG 59.044 45.455 0.00 0.00 0.00 2.57
1554 1692 2.956333 GCAAACTGGGACCAAAACTAGT 59.044 45.455 0.00 0.00 0.00 2.57
1555 1693 4.139038 GCAAACTGGGACCAAAACTAGTA 58.861 43.478 0.00 0.00 0.00 1.82
1556 1694 4.215613 GCAAACTGGGACCAAAACTAGTAG 59.784 45.833 0.00 0.00 0.00 2.57
1557 1695 5.374071 CAAACTGGGACCAAAACTAGTAGT 58.626 41.667 0.00 0.00 0.00 2.73
1558 1696 6.527423 CAAACTGGGACCAAAACTAGTAGTA 58.473 40.000 2.50 0.00 0.00 1.82
1590 1728 1.094785 CTCCGTCGGCAATGGAAAAT 58.905 50.000 6.34 0.00 42.69 1.82
1594 1732 1.389784 CGTCGGCAATGGAAAATTTGC 59.610 47.619 0.00 0.00 45.82 3.68
1612 1750 0.522705 GCATTGTGCGATCTGTGCAG 60.523 55.000 0.00 0.00 44.21 4.41
1614 1752 1.651240 ATTGTGCGATCTGTGCAGGC 61.651 55.000 0.00 0.00 44.21 4.85
1877 2017 1.600107 GGCTCATCCGGTACAACCA 59.400 57.895 0.00 0.00 38.47 3.67
1995 2135 2.223112 CGATTTGAAGCCGGAGAATGTG 60.223 50.000 5.05 0.00 0.00 3.21
2196 2336 1.298859 GGTTCACGGCAGACATGGTC 61.299 60.000 0.00 0.00 0.00 4.02
2205 2345 1.406614 GCAGACATGGTCAAGGAGAGG 60.407 57.143 0.00 0.00 34.60 3.69
2247 2387 5.437289 TGAAGTGCAAGATTGTCGATTTT 57.563 34.783 0.00 0.00 0.00 1.82
2301 2441 2.105649 TGGTGTGATACAGACAAGGCAA 59.894 45.455 0.00 0.00 28.70 4.52
2337 2477 3.387050 AGGTTATCATCGGTTCTGGGTAC 59.613 47.826 0.00 0.00 0.00 3.34
2403 2543 3.127533 GCCACCGGTGACATGCTC 61.128 66.667 36.07 11.12 0.00 4.26
2523 2663 7.442656 GCTAGTAGCATTAGGAATGAAGGTTA 58.557 38.462 17.47 0.00 41.89 2.85
2562 2707 9.337396 TGAAATAACCTTGCTTACTGGTATATG 57.663 33.333 0.00 0.00 33.17 1.78
2565 2710 4.045022 ACCTTGCTTACTGGTATATGGGT 58.955 43.478 0.00 0.00 31.50 4.51
2572 2717 6.601613 TGCTTACTGGTATATGGGTTTTTCTG 59.398 38.462 0.00 0.00 0.00 3.02
2646 2801 5.343249 CCTATTTTTGTGTATTCCTGCTGC 58.657 41.667 0.00 0.00 0.00 5.25
2678 2833 3.876914 GGTCGATTGAGTCATGGCAATTA 59.123 43.478 0.00 0.00 35.05 1.40
2808 2963 6.822667 AATGAAATGTGAACTGATAGTGCA 57.177 33.333 0.00 0.00 29.33 4.57
2924 3085 2.231235 CCCATTGTACAAACTGAAGCCC 59.769 50.000 13.23 0.00 0.00 5.19
2933 3094 4.137543 ACAAACTGAAGCCCTAGAAACAG 58.862 43.478 0.00 0.00 0.00 3.16
2955 3116 4.274950 AGTTTGATGTTCAGTTACCAACCG 59.725 41.667 0.00 0.00 0.00 4.44
2965 3126 2.498885 AGTTACCAACCGTCATAGGACC 59.501 50.000 1.23 0.00 41.13 4.46
2973 3134 0.383231 CGTCATAGGACCGGTGTACC 59.617 60.000 14.63 7.42 41.13 3.34
3034 3196 1.210478 AGTGTGCTGTTCTGGTTGTCT 59.790 47.619 0.00 0.00 0.00 3.41
3039 3201 1.265365 GCTGTTCTGGTTGTCTGCTTC 59.735 52.381 0.00 0.00 0.00 3.86
3083 3245 2.008752 ACACTGGCACAAAACAAAGC 57.991 45.000 0.00 0.00 38.70 3.51
3087 3249 0.107945 TGGCACAAAACAAAGCACCC 60.108 50.000 0.00 0.00 31.92 4.61
3099 3261 0.250166 AAGCACCCAGTACCGACAAC 60.250 55.000 0.00 0.00 0.00 3.32
3135 3297 7.276658 TCCGTAGCCAGTGATTATTGAATAAA 58.723 34.615 1.27 0.00 0.00 1.40
3138 3300 8.017373 CGTAGCCAGTGATTATTGAATAAATGG 58.983 37.037 1.27 8.94 42.48 3.16
3154 3316 7.278424 TGAATAAATGGCAGCTAAAAGATTTGC 59.722 33.333 0.00 0.00 37.52 3.68
3158 3320 5.252969 TGGCAGCTAAAAGATTTGCTATG 57.747 39.130 0.00 0.00 44.14 2.23
3182 3344 1.204146 TACCTGCTGGATTGTCCTCC 58.796 55.000 17.64 0.00 37.46 4.30
3214 3387 8.657074 TTACCTATGTAAGATTGTCAAATCGG 57.343 34.615 0.00 0.00 45.84 4.18
3215 3388 5.527582 ACCTATGTAAGATTGTCAAATCGGC 59.472 40.000 0.00 0.00 45.84 5.54
3216 3389 5.527214 CCTATGTAAGATTGTCAAATCGGCA 59.473 40.000 0.00 0.00 45.84 5.69
3217 3390 4.944962 TGTAAGATTGTCAAATCGGCAG 57.055 40.909 0.00 0.00 45.84 4.85
3218 3391 4.574892 TGTAAGATTGTCAAATCGGCAGA 58.425 39.130 0.00 0.00 45.84 4.26
3219 3392 5.185454 TGTAAGATTGTCAAATCGGCAGAT 58.815 37.500 0.00 0.00 45.84 2.90
3220 3393 6.345298 TGTAAGATTGTCAAATCGGCAGATA 58.655 36.000 0.00 0.00 45.84 1.98
3221 3394 6.992123 TGTAAGATTGTCAAATCGGCAGATAT 59.008 34.615 0.00 0.00 45.84 1.63
3222 3395 8.147704 TGTAAGATTGTCAAATCGGCAGATATA 58.852 33.333 0.00 0.00 45.84 0.86
3223 3396 7.664082 AAGATTGTCAAATCGGCAGATATAG 57.336 36.000 0.00 0.00 45.84 1.31
3224 3397 6.763355 AGATTGTCAAATCGGCAGATATAGT 58.237 36.000 0.00 0.00 45.84 2.12
3225 3398 7.896811 AGATTGTCAAATCGGCAGATATAGTA 58.103 34.615 0.00 0.00 45.84 1.82
3226 3399 7.815068 AGATTGTCAAATCGGCAGATATAGTAC 59.185 37.037 0.00 0.00 45.84 2.73
3227 3400 6.650427 TGTCAAATCGGCAGATATAGTACT 57.350 37.500 0.00 0.00 35.74 2.73
3228 3401 7.050970 TGTCAAATCGGCAGATATAGTACTT 57.949 36.000 0.00 0.00 35.74 2.24
3229 3402 8.173542 TGTCAAATCGGCAGATATAGTACTTA 57.826 34.615 0.00 0.00 35.74 2.24
3230 3403 8.803235 TGTCAAATCGGCAGATATAGTACTTAT 58.197 33.333 0.00 0.00 35.74 1.73
3231 3404 9.640963 GTCAAATCGGCAGATATAGTACTTATT 57.359 33.333 0.00 0.00 35.74 1.40
3237 3410 9.293404 TCGGCAGATATAGTACTTATTAAGTGT 57.707 33.333 17.47 8.44 42.84 3.55
3238 3411 9.557338 CGGCAGATATAGTACTTATTAAGTGTC 57.443 37.037 17.47 10.97 42.84 3.67
3334 3507 2.549754 TGTTGACTCTTAGCTGCAAAGC 59.450 45.455 1.02 0.00 0.00 3.51
3353 3531 1.028330 CCTACAGTGGTGGCATGCAG 61.028 60.000 21.36 4.39 0.00 4.41
3389 3567 2.493278 CCAACCAACCATGAACTCATCC 59.507 50.000 0.00 0.00 33.61 3.51
3467 3645 1.067212 AGATGCCTAAGAAGGTACGCG 59.933 52.381 3.53 3.53 45.64 6.01
3478 3656 1.591863 GGTACGCGCAATCTCTCCC 60.592 63.158 5.73 0.00 0.00 4.30
3514 3692 3.961182 TGTCGACGTCTATTGCCTAATC 58.039 45.455 14.70 0.00 0.00 1.75
3516 3694 4.097437 TGTCGACGTCTATTGCCTAATCTT 59.903 41.667 14.70 0.00 0.00 2.40
3517 3695 5.297527 TGTCGACGTCTATTGCCTAATCTTA 59.702 40.000 14.70 0.00 0.00 2.10
3534 3712 7.929785 CCTAATCTTAATCTAAACCTGCCGTTA 59.070 37.037 0.00 0.00 33.05 3.18
3554 3732 2.099141 TCTTTCAGATTGCCACCTCG 57.901 50.000 0.00 0.00 0.00 4.63
3704 3882 2.417936 GACTTCCTCCGCCCGATC 59.582 66.667 0.00 0.00 0.00 3.69
3722 3900 2.596904 TCCTCGATTTTGATCCGGAC 57.403 50.000 6.12 0.90 0.00 4.79
3785 3963 5.004922 TCAACAACTGATTCAACCAAACC 57.995 39.130 0.00 0.00 0.00 3.27
3786 3964 4.464244 TCAACAACTGATTCAACCAAACCA 59.536 37.500 0.00 0.00 0.00 3.67
3787 3965 4.385358 ACAACTGATTCAACCAAACCAC 57.615 40.909 0.00 0.00 0.00 4.16
3831 4016 2.866762 CAGCCTAACCGACAATAGCTTC 59.133 50.000 0.00 0.00 0.00 3.86
3845 4030 2.046892 CTTCACACAGGAGGCCGG 60.047 66.667 0.00 0.00 0.00 6.13
3903 4088 0.904649 TGGCTCGATGAACCATCTGT 59.095 50.000 5.54 0.00 38.59 3.41
3920 4105 4.160736 TCTGTAGCGGTAATCGATGATG 57.839 45.455 0.00 0.00 42.43 3.07
3924 4109 0.944311 GCGGTAATCGATGATGCGGT 60.944 55.000 0.00 0.00 42.43 5.68
3927 4112 2.286833 CGGTAATCGATGATGCGGTTTT 59.713 45.455 0.00 0.00 42.43 2.43
3956 4143 1.620323 TCCTCATAGCATCATCACCGG 59.380 52.381 0.00 0.00 0.00 5.28
3983 4172 1.595976 CGTGTGTTTTTGGTGTAGCGG 60.596 52.381 0.00 0.00 0.00 5.52
4090 4280 4.023193 GGTGTAAGAAGATGTTTGGTGGTG 60.023 45.833 0.00 0.00 0.00 4.17
4121 4313 5.653769 TCTGGCTATCAGCTTTATTTTTGCT 59.346 36.000 0.00 0.00 41.99 3.91
4146 4338 2.069273 CGTTTGCTGGTTGAGTAGGAG 58.931 52.381 0.00 0.00 0.00 3.69
4149 4341 0.178903 TGCTGGTTGAGTAGGAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
4150 4342 0.984995 GCTGGTTGAGTAGGAGGGTT 59.015 55.000 0.00 0.00 0.00 4.11
4203 4396 2.224018 TGTGGTTCAATTCTTGCTTGCC 60.224 45.455 0.00 0.00 0.00 4.52
4222 4415 4.269523 TGCGCTGGAAAGCTGGGT 62.270 61.111 9.73 0.00 0.00 4.51
4223 4416 2.985847 GCGCTGGAAAGCTGGGTT 60.986 61.111 0.00 0.00 0.00 4.11
4224 4417 2.564721 GCGCTGGAAAGCTGGGTTT 61.565 57.895 0.00 0.00 0.00 3.27
4296 4489 1.023513 CCTGTGCCTCTTGTAGCAGC 61.024 60.000 0.00 0.00 40.28 5.25
4352 4545 2.303600 TGCGACCCCTACTGTTTACATT 59.696 45.455 0.00 0.00 0.00 2.71
4397 4595 5.530915 TGAGTTCCATACAAAAGTTCACCTG 59.469 40.000 0.00 0.00 0.00 4.00
4425 4626 2.004583 TTTAGCATCAACGAGTCCCG 57.995 50.000 0.00 0.00 45.44 5.14
4442 4643 3.020984 TCCCGTAAAAATGGAAGATGCC 58.979 45.455 0.00 0.00 0.00 4.40
4444 4645 3.181487 CCCGTAAAAATGGAAGATGCCAG 60.181 47.826 0.00 0.00 42.15 4.85
4488 4726 3.682696 AGCATGACAAATCTCTTCAGCA 58.317 40.909 0.00 0.00 0.00 4.41
4507 4745 1.027357 AAGCATGGCAAATCCTAGCG 58.973 50.000 0.00 0.00 39.31 4.26
4512 4750 3.699067 CATGGCAAATCCTAGCGAAAAG 58.301 45.455 0.00 0.00 35.26 2.27
4516 4754 4.082787 TGGCAAATCCTAGCGAAAAGAAAG 60.083 41.667 0.00 0.00 35.26 2.62
4517 4755 4.156008 GGCAAATCCTAGCGAAAAGAAAGA 59.844 41.667 0.00 0.00 0.00 2.52
4551 4789 5.505489 GGTTTTGCCATGTTTTAAAAGCTGG 60.505 40.000 18.29 18.29 37.47 4.85
4553 4791 1.726248 GCCATGTTTTAAAAGCTGGCG 59.274 47.619 26.05 8.68 37.10 5.69
4564 4802 2.472695 AAGCTGGCGTCAGATTTGTA 57.527 45.000 23.78 0.00 46.14 2.41
4565 4803 2.472695 AGCTGGCGTCAGATTTGTAA 57.527 45.000 23.78 0.00 43.49 2.41
4579 4817 5.650703 CAGATTTGTAACGGGGTCCTAAAAT 59.349 40.000 0.00 0.00 0.00 1.82
4580 4818 6.152154 CAGATTTGTAACGGGGTCCTAAAATT 59.848 38.462 0.00 0.00 0.00 1.82
4587 4825 3.014623 CGGGGTCCTAAAATTGTTCCTC 58.985 50.000 0.00 0.00 0.00 3.71
4588 4826 3.308188 CGGGGTCCTAAAATTGTTCCTCT 60.308 47.826 0.00 0.00 0.00 3.69
4589 4827 4.080751 CGGGGTCCTAAAATTGTTCCTCTA 60.081 45.833 0.00 0.00 0.00 2.43
4590 4828 5.572066 CGGGGTCCTAAAATTGTTCCTCTAA 60.572 44.000 0.00 0.00 0.00 2.10
4591 4829 5.886474 GGGGTCCTAAAATTGTTCCTCTAAG 59.114 44.000 0.00 0.00 0.00 2.18
4592 4830 5.886474 GGGTCCTAAAATTGTTCCTCTAAGG 59.114 44.000 0.00 0.00 36.46 2.69
4593 4831 5.886474 GGTCCTAAAATTGTTCCTCTAAGGG 59.114 44.000 0.00 0.00 35.59 3.95
4594 4832 5.357314 GTCCTAAAATTGTTCCTCTAAGGGC 59.643 44.000 0.00 0.00 35.59 5.19
4595 4833 5.253096 TCCTAAAATTGTTCCTCTAAGGGCT 59.747 40.000 0.00 0.00 35.59 5.19
4596 4834 5.590663 CCTAAAATTGTTCCTCTAAGGGCTC 59.409 44.000 0.00 0.00 35.59 4.70
4597 4835 4.657814 AAATTGTTCCTCTAAGGGCTCA 57.342 40.909 0.00 0.00 35.59 4.26
4598 4836 4.870021 AATTGTTCCTCTAAGGGCTCAT 57.130 40.909 0.00 0.00 35.59 2.90
4599 4837 4.870021 ATTGTTCCTCTAAGGGCTCATT 57.130 40.909 0.00 0.00 35.59 2.57
4600 4838 4.657814 TTGTTCCTCTAAGGGCTCATTT 57.342 40.909 0.00 0.00 35.59 2.32
4601 4839 3.955471 TGTTCCTCTAAGGGCTCATTTG 58.045 45.455 0.00 0.00 35.59 2.32
4602 4840 3.282885 GTTCCTCTAAGGGCTCATTTGG 58.717 50.000 0.00 0.00 35.59 3.28
4603 4841 2.562296 TCCTCTAAGGGCTCATTTGGT 58.438 47.619 0.00 0.00 35.59 3.67
4604 4842 2.919602 TCCTCTAAGGGCTCATTTGGTT 59.080 45.455 0.00 0.00 35.59 3.67
4605 4843 3.019564 CCTCTAAGGGCTCATTTGGTTG 58.980 50.000 0.00 0.00 0.00 3.77
4606 4844 2.424956 CTCTAAGGGCTCATTTGGTTGC 59.575 50.000 0.00 0.00 0.00 4.17
4607 4845 2.170166 CTAAGGGCTCATTTGGTTGCA 58.830 47.619 0.00 0.00 0.00 4.08
4608 4846 1.648116 AAGGGCTCATTTGGTTGCAT 58.352 45.000 0.00 0.00 0.00 3.96
4609 4847 0.899720 AGGGCTCATTTGGTTGCATG 59.100 50.000 0.00 0.00 0.00 4.06
4610 4848 0.108041 GGGCTCATTTGGTTGCATGG 60.108 55.000 0.00 0.00 0.00 3.66
4611 4849 0.609662 GGCTCATTTGGTTGCATGGT 59.390 50.000 0.00 0.00 0.00 3.55
4612 4850 1.824230 GGCTCATTTGGTTGCATGGTA 59.176 47.619 0.00 0.00 0.00 3.25
4613 4851 2.431782 GGCTCATTTGGTTGCATGGTAT 59.568 45.455 0.00 0.00 0.00 2.73
4614 4852 3.491447 GGCTCATTTGGTTGCATGGTATC 60.491 47.826 0.00 0.00 0.00 2.24
4615 4853 3.491447 GCTCATTTGGTTGCATGGTATCC 60.491 47.826 0.00 0.00 0.00 2.59
4616 4854 3.030291 TCATTTGGTTGCATGGTATCCC 58.970 45.455 0.00 0.00 0.00 3.85
4617 4855 2.917713 TTTGGTTGCATGGTATCCCT 57.082 45.000 0.00 0.00 0.00 4.20
4618 4856 2.435372 TTGGTTGCATGGTATCCCTC 57.565 50.000 0.00 0.00 0.00 4.30
4619 4857 0.550914 TGGTTGCATGGTATCCCTCC 59.449 55.000 0.00 0.00 0.00 4.30
4620 4858 0.535102 GGTTGCATGGTATCCCTCCG 60.535 60.000 0.00 0.00 0.00 4.63
4621 4859 0.535102 GTTGCATGGTATCCCTCCGG 60.535 60.000 0.00 0.00 0.00 5.14
4622 4860 1.705002 TTGCATGGTATCCCTCCGGG 61.705 60.000 0.00 0.00 46.11 5.73
4638 4876 1.379146 GGGATCCCCGCTTATTCCC 59.621 63.158 21.42 0.00 39.35 3.97
4639 4877 1.134438 GGGATCCCCGCTTATTCCCT 61.134 60.000 21.42 0.00 42.37 4.20
4640 4878 0.036875 GGATCCCCGCTTATTCCCTG 59.963 60.000 0.00 0.00 0.00 4.45
4641 4879 0.036875 GATCCCCGCTTATTCCCTGG 59.963 60.000 0.00 0.00 0.00 4.45
4642 4880 2.069165 ATCCCCGCTTATTCCCTGGC 62.069 60.000 0.00 0.00 0.00 4.85
4643 4881 2.203351 CCCGCTTATTCCCTGGCC 60.203 66.667 0.00 0.00 0.00 5.36
4644 4882 2.203351 CCGCTTATTCCCTGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
4645 4883 2.203351 CGCTTATTCCCTGGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
4646 4884 3.015383 GCTTATTCCCTGGCCCCA 58.985 61.111 0.00 0.00 0.00 4.96
4647 4885 1.152673 GCTTATTCCCTGGCCCCAG 60.153 63.158 7.36 7.36 43.26 4.45
4648 4886 1.645402 GCTTATTCCCTGGCCCCAGA 61.645 60.000 15.76 0.00 46.30 3.86
4649 4887 0.926293 CTTATTCCCTGGCCCCAGAA 59.074 55.000 15.76 0.00 46.30 3.02
4650 4888 1.287739 CTTATTCCCTGGCCCCAGAAA 59.712 52.381 15.76 9.67 46.30 2.52
4651 4889 0.629058 TATTCCCTGGCCCCAGAAAC 59.371 55.000 15.76 0.00 46.30 2.78
4652 4890 2.168272 ATTCCCTGGCCCCAGAAACC 62.168 60.000 15.76 0.00 46.30 3.27
4653 4891 3.589542 CCCTGGCCCCAGAAACCA 61.590 66.667 15.76 0.00 46.30 3.67
4654 4892 2.772924 CCTGGCCCCAGAAACCAT 59.227 61.111 15.76 0.00 46.30 3.55
4655 4893 1.683365 CCTGGCCCCAGAAACCATG 60.683 63.158 15.76 0.00 46.30 3.66
4656 4894 1.683365 CTGGCCCCAGAAACCATGG 60.683 63.158 11.19 11.19 46.30 3.66
4661 4899 4.023137 CCAGAAACCATGGGCCAG 57.977 61.111 18.09 0.82 33.94 4.85
4662 4900 1.383799 CCAGAAACCATGGGCCAGA 59.616 57.895 18.09 0.00 33.94 3.86
4663 4901 0.032813 CCAGAAACCATGGGCCAGAT 60.033 55.000 18.09 0.00 33.94 2.90
4664 4902 1.396653 CAGAAACCATGGGCCAGATC 58.603 55.000 18.09 5.56 0.00 2.75
4665 4903 1.002069 AGAAACCATGGGCCAGATCA 58.998 50.000 18.09 0.00 0.00 2.92
4666 4904 1.064166 AGAAACCATGGGCCAGATCAG 60.064 52.381 18.09 0.61 0.00 2.90
4667 4905 0.685458 AAACCATGGGCCAGATCAGC 60.685 55.000 18.09 0.00 0.00 4.26
4675 4913 3.089874 CCAGATCAGCCCCGGGAA 61.090 66.667 26.32 4.40 0.00 3.97
4676 4914 2.507944 CAGATCAGCCCCGGGAAG 59.492 66.667 26.32 11.63 0.00 3.46
4677 4915 2.041265 AGATCAGCCCCGGGAAGT 59.959 61.111 26.32 1.83 0.00 3.01
4678 4916 2.066999 AGATCAGCCCCGGGAAGTC 61.067 63.158 26.32 12.47 0.00 3.01
4679 4917 2.285368 ATCAGCCCCGGGAAGTCA 60.285 61.111 26.32 1.00 0.00 3.41
4680 4918 1.910580 GATCAGCCCCGGGAAGTCAA 61.911 60.000 26.32 1.83 0.00 3.18
4681 4919 2.198304 ATCAGCCCCGGGAAGTCAAC 62.198 60.000 26.32 1.55 0.00 3.18
4682 4920 3.647771 AGCCCCGGGAAGTCAACC 61.648 66.667 26.32 0.00 0.00 3.77
4683 4921 3.961414 GCCCCGGGAAGTCAACCA 61.961 66.667 26.32 0.00 0.00 3.67
4684 4922 3.087065 CCCCGGGAAGTCAACCAT 58.913 61.111 26.32 0.00 0.00 3.55
4685 4923 1.378514 CCCCGGGAAGTCAACCATG 60.379 63.158 26.32 0.00 0.00 3.66
4686 4924 1.378514 CCCGGGAAGTCAACCATGG 60.379 63.158 18.48 11.19 0.00 3.66
4687 4925 2.046285 CCGGGAAGTCAACCATGGC 61.046 63.158 13.04 0.00 0.00 4.40
4688 4926 1.303236 CGGGAAGTCAACCATGGCA 60.303 57.895 13.04 0.00 31.99 4.92
4689 4927 0.680921 CGGGAAGTCAACCATGGCAT 60.681 55.000 13.04 0.00 31.99 4.40
4690 4928 1.560505 GGGAAGTCAACCATGGCATT 58.439 50.000 13.04 0.00 31.99 3.56
4691 4929 1.901833 GGGAAGTCAACCATGGCATTT 59.098 47.619 13.04 0.00 31.99 2.32
4692 4930 2.354003 GGGAAGTCAACCATGGCATTTG 60.354 50.000 13.04 9.53 31.99 2.32
4693 4931 2.354003 GGAAGTCAACCATGGCATTTGG 60.354 50.000 13.04 8.59 40.26 3.28
4694 4932 1.269012 AGTCAACCATGGCATTTGGG 58.731 50.000 13.04 6.44 38.64 4.12
4695 4933 0.391528 GTCAACCATGGCATTTGGGC 60.392 55.000 13.04 2.89 38.64 5.36
4714 4952 2.590092 CCCATCCTGTCGGGGAAC 59.410 66.667 0.00 0.00 45.08 3.62
4727 4965 3.725032 GGAACCCCGACCCTTCCC 61.725 72.222 0.00 0.00 0.00 3.97
4728 4966 3.725032 GAACCCCGACCCTTCCCC 61.725 72.222 0.00 0.00 0.00 4.81
4737 4975 4.442454 CCCTTCCCCCGGCCTTTC 62.442 72.222 0.00 0.00 0.00 2.62
4738 4976 4.442454 CCTTCCCCCGGCCTTTCC 62.442 72.222 0.00 0.00 0.00 3.13
4739 4977 4.442454 CTTCCCCCGGCCTTTCCC 62.442 72.222 0.00 0.00 0.00 3.97
4745 4983 3.420482 CCGGCCTTTCCCTGGGAT 61.420 66.667 17.93 0.00 0.00 3.85
4746 4984 2.076184 CCGGCCTTTCCCTGGGATA 61.076 63.158 17.93 11.29 0.00 2.59
4747 4985 1.148498 CGGCCTTTCCCTGGGATAC 59.852 63.158 17.93 6.27 0.00 2.24
4748 4986 1.632018 CGGCCTTTCCCTGGGATACA 61.632 60.000 17.93 0.00 39.74 2.29
4750 4988 0.919710 GCCTTTCCCTGGGATACAGT 59.080 55.000 17.93 0.00 46.06 3.55
4751 4989 1.285078 GCCTTTCCCTGGGATACAGTT 59.715 52.381 17.93 0.00 46.06 3.16
4752 4990 2.684038 GCCTTTCCCTGGGATACAGTTC 60.684 54.545 17.93 4.02 46.06 3.01
4753 4991 2.092375 CCTTTCCCTGGGATACAGTTCC 60.092 54.545 17.93 0.00 46.06 3.62
4754 4992 2.352561 TTCCCTGGGATACAGTTCCA 57.647 50.000 17.93 0.00 46.06 3.53
4755 4993 1.580059 TCCCTGGGATACAGTTCCAC 58.420 55.000 12.53 0.00 46.06 4.02
4756 4994 0.178068 CCCTGGGATACAGTTCCACG 59.822 60.000 7.01 0.00 46.06 4.94
4757 4995 1.191535 CCTGGGATACAGTTCCACGA 58.808 55.000 0.00 0.00 46.06 4.35
4758 4996 1.134788 CCTGGGATACAGTTCCACGAC 60.135 57.143 0.00 0.00 46.06 4.34
4759 4997 1.825474 CTGGGATACAGTTCCACGACT 59.175 52.381 0.00 0.00 42.42 4.18
4760 4998 1.822990 TGGGATACAGTTCCACGACTC 59.177 52.381 0.00 0.00 37.53 3.36
4761 4999 1.202268 GGGATACAGTTCCACGACTCG 60.202 57.143 0.00 0.00 37.53 4.18
4762 5000 1.202268 GGATACAGTTCCACGACTCGG 60.202 57.143 2.98 0.00 35.72 4.63
4763 5001 1.471684 GATACAGTTCCACGACTCGGT 59.528 52.381 2.98 0.00 0.00 4.69
4764 5002 2.183478 TACAGTTCCACGACTCGGTA 57.817 50.000 2.98 0.00 0.00 4.02
4765 5003 0.879765 ACAGTTCCACGACTCGGTAG 59.120 55.000 2.98 0.00 0.00 3.18
4766 5004 1.162698 CAGTTCCACGACTCGGTAGA 58.837 55.000 2.98 0.00 0.00 2.59
4767 5005 1.743958 CAGTTCCACGACTCGGTAGAT 59.256 52.381 2.98 0.00 0.00 1.98
4768 5006 2.015587 AGTTCCACGACTCGGTAGATC 58.984 52.381 2.98 0.00 0.00 2.75
4769 5007 1.012086 TTCCACGACTCGGTAGATCG 58.988 55.000 2.98 0.00 41.60 3.69
4770 5008 0.812811 TCCACGACTCGGTAGATCGG 60.813 60.000 2.98 0.00 40.16 4.18
4771 5009 1.647629 CACGACTCGGTAGATCGGG 59.352 63.158 2.98 0.00 40.16 5.14
4772 5010 0.812811 CACGACTCGGTAGATCGGGA 60.813 60.000 2.98 0.00 41.86 5.14
4773 5011 0.107508 ACGACTCGGTAGATCGGGAA 60.108 55.000 2.98 0.00 40.16 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.386848 CGTACTCATTTAAGTCCCTCTGAAAAA 59.613 37.037 0.00 0.00 31.05 1.94
19 20 5.578005 TCGTACTCATTTAAGTCCCTCTG 57.422 43.478 0.00 0.00 0.00 3.35
39 40 7.428472 GGTTTCCGCTTTCTTTCTAATATTTCG 59.572 37.037 0.00 0.00 0.00 3.46
45 46 4.680171 CGGTTTCCGCTTTCTTTCTAAT 57.320 40.909 0.00 0.00 41.17 1.73
64 66 8.509690 TCCTCTAGTAATATTTGACGTTATCGG 58.490 37.037 0.00 0.00 41.85 4.18
80 82 9.144298 CCCTACTCATTTATGTTCCTCTAGTAA 57.856 37.037 0.00 0.00 0.00 2.24
82 84 6.555360 CCCCTACTCATTTATGTTCCTCTAGT 59.445 42.308 0.00 0.00 0.00 2.57
83 85 6.782988 TCCCCTACTCATTTATGTTCCTCTAG 59.217 42.308 0.00 0.00 0.00 2.43
87 89 8.525729 AATATCCCCTACTCATTTATGTTCCT 57.474 34.615 0.00 0.00 0.00 3.36
136 138 4.612264 TGTTTCCCCTAATAGTATCCGC 57.388 45.455 0.00 0.00 0.00 5.54
137 139 9.734984 AATTTATGTTTCCCCTAATAGTATCCG 57.265 33.333 0.00 0.00 0.00 4.18
168 170 7.299586 CGTCCGTTTTGGTTTCTAATATTTCA 58.700 34.615 0.00 0.00 39.52 2.69
176 178 1.950828 TGCGTCCGTTTTGGTTTCTA 58.049 45.000 0.00 0.00 39.52 2.10
177 179 1.064952 CTTGCGTCCGTTTTGGTTTCT 59.935 47.619 0.00 0.00 39.52 2.52
183 185 1.004715 ACGTTACTTGCGTCCGTTTTG 60.005 47.619 0.00 0.00 38.23 2.44
193 195 8.898792 CCTAAATTTACTTTCAACGTTACTTGC 58.101 33.333 0.00 0.00 0.00 4.01
217 219 9.886132 ATATTTGTACTACTTTGAATTCGACCT 57.114 29.630 0.04 0.00 0.00 3.85
239 241 5.129815 TCCTACAAACACCCGCTTCTATATT 59.870 40.000 0.00 0.00 0.00 1.28
250 252 1.982958 TCCCTTCTCCTACAAACACCC 59.017 52.381 0.00 0.00 0.00 4.61
251 253 3.782656 TTCCCTTCTCCTACAAACACC 57.217 47.619 0.00 0.00 0.00 4.16
254 256 4.726583 AGGTTTTCCCTTCTCCTACAAAC 58.273 43.478 0.00 0.00 42.73 2.93
312 315 6.588373 GGTTTTGGCGTGTTATTTTACATCAT 59.412 34.615 0.00 0.00 0.00 2.45
318 321 4.202121 TGCTGGTTTTGGCGTGTTATTTTA 60.202 37.500 0.00 0.00 0.00 1.52
322 325 1.323412 TGCTGGTTTTGGCGTGTTAT 58.677 45.000 0.00 0.00 0.00 1.89
323 326 1.103803 TTGCTGGTTTTGGCGTGTTA 58.896 45.000 0.00 0.00 0.00 2.41
356 422 4.617959 CGACTCATAGCGGAAAAGGATTA 58.382 43.478 0.00 0.00 0.00 1.75
378 444 2.541999 TTTCGTGCGAAAATGGAACACC 60.542 45.455 16.03 0.00 39.33 4.16
396 463 5.344933 ACTGAAGCGAAAACACAAACTTTTC 59.655 36.000 0.00 0.00 35.24 2.29
400 467 3.758300 CACTGAAGCGAAAACACAAACT 58.242 40.909 0.00 0.00 0.00 2.66
401 468 2.278875 GCACTGAAGCGAAAACACAAAC 59.721 45.455 0.00 0.00 0.00 2.93
410 477 1.202582 GACTAGAGGCACTGAAGCGAA 59.797 52.381 0.00 0.00 41.55 4.70
411 478 0.811915 GACTAGAGGCACTGAAGCGA 59.188 55.000 0.00 0.00 41.55 4.93
415 482 1.540267 GTGACGACTAGAGGCACTGAA 59.460 52.381 17.51 0.00 41.55 3.02
418 485 2.783609 TAGTGACGACTAGAGGCACT 57.216 50.000 26.00 26.00 42.04 4.40
427 494 3.008813 TCTTAGACCACCTAGTGACGACT 59.991 47.826 0.00 0.00 35.23 4.18
428 495 3.341823 TCTTAGACCACCTAGTGACGAC 58.658 50.000 0.00 0.00 35.23 4.34
429 496 3.708403 TCTTAGACCACCTAGTGACGA 57.292 47.619 0.00 0.00 35.23 4.20
430 497 4.641094 AGATTCTTAGACCACCTAGTGACG 59.359 45.833 0.00 0.00 35.23 4.35
431 498 7.055378 TCTAGATTCTTAGACCACCTAGTGAC 58.945 42.308 0.00 0.00 35.23 3.67
432 499 7.209340 TCTAGATTCTTAGACCACCTAGTGA 57.791 40.000 0.00 0.00 35.23 3.41
434 501 7.588169 ACATCTAGATTCTTAGACCACCTAGT 58.412 38.462 1.33 0.00 32.78 2.57
435 502 9.575868 TTACATCTAGATTCTTAGACCACCTAG 57.424 37.037 1.33 0.00 32.78 3.02
437 504 9.440761 AATTACATCTAGATTCTTAGACCACCT 57.559 33.333 1.33 0.00 32.78 4.00
465 532 6.650807 TGCACAACAAACACCAGAAATAAAAA 59.349 30.769 0.00 0.00 0.00 1.94
466 533 6.166279 TGCACAACAAACACCAGAAATAAAA 58.834 32.000 0.00 0.00 0.00 1.52
469 536 4.991153 TGCACAACAAACACCAGAAATA 57.009 36.364 0.00 0.00 0.00 1.40
470 537 3.883830 TGCACAACAAACACCAGAAAT 57.116 38.095 0.00 0.00 0.00 2.17
471 538 3.321497 GTTGCACAACAAACACCAGAAA 58.679 40.909 8.61 0.00 40.82 2.52
472 539 2.353208 GGTTGCACAACAAACACCAGAA 60.353 45.455 14.94 0.00 45.90 3.02
473 540 1.203523 GGTTGCACAACAAACACCAGA 59.796 47.619 14.94 0.00 45.90 3.86
474 541 1.639280 GGTTGCACAACAAACACCAG 58.361 50.000 14.94 0.00 45.90 4.00
475 542 3.822607 GGTTGCACAACAAACACCA 57.177 47.368 14.94 0.00 45.90 4.17
479 546 4.118410 TCAATCATGGTTGCACAACAAAC 58.882 39.130 14.14 0.00 46.87 2.93
480 547 4.397481 TCAATCATGGTTGCACAACAAA 57.603 36.364 14.14 3.56 42.85 2.83
481 548 4.099113 TCTTCAATCATGGTTGCACAACAA 59.901 37.500 14.14 4.40 42.85 2.83
482 549 3.635836 TCTTCAATCATGGTTGCACAACA 59.364 39.130 14.14 0.00 42.85 3.33
483 550 4.241590 TCTTCAATCATGGTTGCACAAC 57.758 40.909 14.14 4.92 40.45 3.32
484 551 4.523558 TCATCTTCAATCATGGTTGCACAA 59.476 37.500 14.14 2.64 0.00 3.33
486 553 4.707030 TCATCTTCAATCATGGTTGCAC 57.293 40.909 14.14 0.00 0.00 4.57
487 554 5.925506 ATTCATCTTCAATCATGGTTGCA 57.074 34.783 14.14 1.90 0.00 4.08
488 555 6.798482 TGTATTCATCTTCAATCATGGTTGC 58.202 36.000 14.14 0.00 0.00 4.17
504 571 6.644347 ACGAGAAAACTCCTGATGTATTCAT 58.356 36.000 0.00 0.00 36.95 2.57
505 572 6.037786 ACGAGAAAACTCCTGATGTATTCA 57.962 37.500 0.00 0.00 0.00 2.57
506 573 6.100004 TGACGAGAAAACTCCTGATGTATTC 58.900 40.000 0.00 0.00 0.00 1.75
509 576 5.462530 TTGACGAGAAAACTCCTGATGTA 57.537 39.130 0.00 0.00 0.00 2.29
511 578 5.673337 TTTTGACGAGAAAACTCCTGATG 57.327 39.130 0.00 0.00 0.00 3.07
539 606 5.240623 TCTTTAATGATTCACACCGCAACTT 59.759 36.000 0.00 0.00 0.00 2.66
540 607 4.759693 TCTTTAATGATTCACACCGCAACT 59.240 37.500 0.00 0.00 0.00 3.16
543 610 5.335583 CCTTTCTTTAATGATTCACACCGCA 60.336 40.000 0.00 0.00 0.00 5.69
544 611 5.095490 CCTTTCTTTAATGATTCACACCGC 58.905 41.667 0.00 0.00 0.00 5.68
545 612 5.414454 TCCCTTTCTTTAATGATTCACACCG 59.586 40.000 0.00 0.00 0.00 4.94
546 613 6.834168 TCCCTTTCTTTAATGATTCACACC 57.166 37.500 0.00 0.00 0.00 4.16
547 614 9.143631 CAATTCCCTTTCTTTAATGATTCACAC 57.856 33.333 0.00 0.00 0.00 3.82
548 615 8.313292 CCAATTCCCTTTCTTTAATGATTCACA 58.687 33.333 0.00 0.00 0.00 3.58
549 616 7.765819 CCCAATTCCCTTTCTTTAATGATTCAC 59.234 37.037 0.00 0.00 0.00 3.18
551 618 6.763135 GCCCAATTCCCTTTCTTTAATGATTC 59.237 38.462 0.00 0.00 0.00 2.52
553 620 5.966319 AGCCCAATTCCCTTTCTTTAATGAT 59.034 36.000 0.00 0.00 0.00 2.45
554 621 5.341169 AGCCCAATTCCCTTTCTTTAATGA 58.659 37.500 0.00 0.00 0.00 2.57
555 622 5.395657 GGAGCCCAATTCCCTTTCTTTAATG 60.396 44.000 0.00 0.00 0.00 1.90
564 631 2.414250 TTTTGGAGCCCAATTCCCTT 57.586 45.000 7.39 0.00 43.55 3.95
725 818 2.291741 GGCACTGCTTTATACTCCATGC 59.708 50.000 0.00 0.00 0.00 4.06
726 819 3.313526 GTGGCACTGCTTTATACTCCATG 59.686 47.826 11.13 0.00 0.00 3.66
799 903 2.429930 CACCACACCACACCGGAT 59.570 61.111 9.46 0.00 38.63 4.18
800 904 3.867783 CCACCACACCACACCGGA 61.868 66.667 9.46 0.00 38.63 5.14
801 905 4.183858 ACCACCACACCACACCGG 62.184 66.667 0.00 0.00 42.50 5.28
802 906 2.899838 CACCACCACACCACACCG 60.900 66.667 0.00 0.00 0.00 4.94
803 907 2.518349 CCACCACCACACCACACC 60.518 66.667 0.00 0.00 0.00 4.16
954 1063 1.154814 GCTCCTCCGGATTCGAAAGC 61.155 60.000 3.57 4.36 39.00 3.51
1247 1377 3.134458 ACAGAGCAGGAAGAAAAAGACG 58.866 45.455 0.00 0.00 0.00 4.18
1253 1383 4.273480 CGAAGAAAACAGAGCAGGAAGAAA 59.727 41.667 0.00 0.00 0.00 2.52
1320 1450 2.056906 AATAGCGGCTGATGGGGGAC 62.057 60.000 13.86 0.00 0.00 4.46
1321 1451 1.770110 AATAGCGGCTGATGGGGGA 60.770 57.895 13.86 0.00 0.00 4.81
1322 1452 1.601759 CAATAGCGGCTGATGGGGG 60.602 63.158 13.86 0.00 0.00 5.40
1323 1453 0.396435 TACAATAGCGGCTGATGGGG 59.604 55.000 13.86 0.00 0.00 4.96
1330 1466 0.602905 GGCGGAATACAATAGCGGCT 60.603 55.000 7.98 7.98 0.00 5.52
1341 1478 2.188469 GCCGGAGTTGGCGGAATA 59.812 61.111 5.05 0.00 46.75 1.75
1386 1523 3.602924 TAAAAGCGGCAAAGCGCGG 62.603 57.895 8.83 0.00 43.84 6.46
1387 1524 2.127042 TAAAAGCGGCAAAGCGCG 60.127 55.556 0.00 0.00 43.84 6.86
1422 1559 1.401018 GGCCGAATTTGAACAGAACCG 60.401 52.381 0.00 0.00 0.00 4.44
1520 1658 1.401552 CAGTTTGCACATATCACGGGG 59.598 52.381 0.00 0.00 0.00 5.73
1553 1691 6.292596 CGACGGAGGACAGTAAATACTACTAC 60.293 46.154 0.00 0.00 34.13 2.73
1554 1692 5.755375 CGACGGAGGACAGTAAATACTACTA 59.245 44.000 0.00 0.00 34.13 1.82
1555 1693 4.574013 CGACGGAGGACAGTAAATACTACT 59.426 45.833 0.00 0.00 34.13 2.57
1556 1694 4.260948 CCGACGGAGGACAGTAAATACTAC 60.261 50.000 8.64 0.00 34.13 2.73
1557 1695 3.879295 CCGACGGAGGACAGTAAATACTA 59.121 47.826 8.64 0.00 34.13 1.82
1558 1696 2.686915 CCGACGGAGGACAGTAAATACT 59.313 50.000 8.64 0.00 36.90 2.12
1590 1728 1.666599 GCACAGATCGCACAATGCAAA 60.667 47.619 0.00 0.00 45.36 3.68
1594 1732 0.098200 CCTGCACAGATCGCACAATG 59.902 55.000 0.00 0.00 35.08 2.82
1612 1750 1.767759 ATCCAGTTAGCAACATGGCC 58.232 50.000 0.00 0.00 32.90 5.36
1614 1752 3.313526 GCTGTATCCAGTTAGCAACATGG 59.686 47.826 0.00 0.00 41.02 3.66
1755 1895 1.086634 GGATGACGCACTTGGAGCTC 61.087 60.000 4.71 4.71 0.00 4.09
1757 1897 1.364626 CTGGATGACGCACTTGGAGC 61.365 60.000 0.00 0.00 0.00 4.70
1758 1898 1.364626 GCTGGATGACGCACTTGGAG 61.365 60.000 0.00 0.00 0.00 3.86
1866 2006 1.519408 CCTTGTTCTGGTTGTACCGG 58.481 55.000 0.00 0.00 46.14 5.28
1877 2017 2.044946 GCCCGATGCCCTTGTTCT 60.045 61.111 0.00 0.00 0.00 3.01
1995 2135 4.261530 GGGTTTATCGTAGACACTAGGAGC 60.262 50.000 0.00 0.00 42.51 4.70
2007 2147 2.166254 GTCCTTGGACGGGTTTATCGTA 59.834 50.000 3.87 0.00 41.22 3.43
2047 2187 1.524849 GCCTCTTGAGAATCGGGGC 60.525 63.158 0.00 0.00 38.61 5.80
2094 2234 3.001127 GCATCTTCTCGCTGAAACTGATC 59.999 47.826 0.00 0.00 33.79 2.92
2175 2315 2.047274 ATGTCTGCCGTGAACCCG 60.047 61.111 0.00 0.00 0.00 5.28
2196 2336 0.469070 CATCCAGGCTCCTCTCCTTG 59.531 60.000 0.00 0.00 0.00 3.61
2301 2441 2.708037 TAACCTCGGGTGCCCTATAT 57.292 50.000 5.64 0.00 35.34 0.86
2337 2477 4.887748 ACCACATATCGGCAGAATAAGAG 58.112 43.478 0.00 0.00 0.00 2.85
2379 2519 4.680237 TCACCGGTGGCAAGCTCG 62.680 66.667 33.40 5.52 0.00 5.03
2403 2543 0.032540 GGCAAGTGTTGGGAGCAAAG 59.967 55.000 0.00 0.00 0.00 2.77
2457 2597 8.068977 GCTGAAAATGAAACACAATGCAAATTA 58.931 29.630 0.00 0.00 0.00 1.40
2458 2598 6.913673 GCTGAAAATGAAACACAATGCAAATT 59.086 30.769 0.00 0.00 0.00 1.82
2459 2599 6.038382 TGCTGAAAATGAAACACAATGCAAAT 59.962 30.769 0.00 0.00 0.00 2.32
2462 2602 4.270566 GTGCTGAAAATGAAACACAATGCA 59.729 37.500 0.00 0.00 0.00 3.96
2464 2604 6.592798 AAGTGCTGAAAATGAAACACAATG 57.407 33.333 0.00 0.00 0.00 2.82
2465 2605 7.614124 AAAAGTGCTGAAAATGAAACACAAT 57.386 28.000 0.00 0.00 0.00 2.71
2498 2638 5.859495 ACCTTCATTCCTAATGCTACTAGC 58.141 41.667 0.61 0.61 42.82 3.42
2537 2677 8.784043 CCATATACCAGTAAGCAAGGTTATTTC 58.216 37.037 0.00 0.00 36.87 2.17
2538 2678 7.724061 CCCATATACCAGTAAGCAAGGTTATTT 59.276 37.037 0.00 0.00 36.87 1.40
2539 2679 7.147195 ACCCATATACCAGTAAGCAAGGTTATT 60.147 37.037 0.00 0.00 36.87 1.40
2540 2680 6.331837 ACCCATATACCAGTAAGCAAGGTTAT 59.668 38.462 0.00 0.00 36.87 1.89
2541 2681 5.668535 ACCCATATACCAGTAAGCAAGGTTA 59.331 40.000 0.00 0.00 36.87 2.85
2542 2682 4.477213 ACCCATATACCAGTAAGCAAGGTT 59.523 41.667 0.00 0.00 36.87 3.50
2543 2683 4.045022 ACCCATATACCAGTAAGCAAGGT 58.955 43.478 0.00 0.00 39.41 3.50
2544 2684 4.706842 ACCCATATACCAGTAAGCAAGG 57.293 45.455 0.00 0.00 0.00 3.61
2545 2685 7.339466 AGAAAAACCCATATACCAGTAAGCAAG 59.661 37.037 0.00 0.00 0.00 4.01
2546 2686 7.122055 CAGAAAAACCCATATACCAGTAAGCAA 59.878 37.037 0.00 0.00 0.00 3.91
2555 2700 8.747538 ACTAATGTCAGAAAAACCCATATACC 57.252 34.615 0.00 0.00 0.00 2.73
2572 2717 8.451748 GGAAAATGGAGTAGTTTGACTAATGTC 58.548 37.037 0.00 0.00 43.20 3.06
2588 2742 2.880890 CCTCGGCATAAGGAAAATGGAG 59.119 50.000 0.00 0.00 35.83 3.86
2646 2801 4.929211 TGACTCAATCGACCAACATAACAG 59.071 41.667 0.00 0.00 0.00 3.16
2808 2963 4.351054 CCTGGGAACGCAGCCCTT 62.351 66.667 12.34 0.00 46.19 3.95
2828 2983 3.231965 CAGAAAAGTGCTCAAATCGCAG 58.768 45.455 0.00 0.00 38.19 5.18
2877 3038 4.265893 TGCTTCGCAGGGTCATAATAAAA 58.734 39.130 0.00 0.00 33.32 1.52
2894 3055 4.278419 AGTTTGTACAATGGGAGTTGCTTC 59.722 41.667 9.56 0.00 32.32 3.86
2902 3063 3.153919 GGCTTCAGTTTGTACAATGGGA 58.846 45.455 9.56 4.43 0.00 4.37
2924 3085 8.283291 GGTAACTGAACATCAAACTGTTTCTAG 58.717 37.037 2.13 0.00 39.40 2.43
2933 3094 4.035909 ACGGTTGGTAACTGAACATCAAAC 59.964 41.667 7.47 0.00 40.26 2.93
2955 3116 1.477553 TGGTACACCGGTCCTATGAC 58.522 55.000 2.59 0.00 40.98 3.06
2965 3126 4.680708 AAGATGCACTTCTATGGTACACCG 60.681 45.833 0.00 0.00 35.65 4.94
2973 3134 6.932356 ACCACATTAAGATGCACTTCTATG 57.068 37.500 5.04 11.21 39.72 2.23
3034 3196 4.005650 CTGGCAAGAATAACAGAGAAGCA 58.994 43.478 0.00 0.00 32.86 3.91
3039 3201 7.798596 ATTACATCTGGCAAGAATAACAGAG 57.201 36.000 0.00 0.00 42.55 3.35
3083 3245 0.245539 ATCGTTGTCGGTACTGGGTG 59.754 55.000 0.85 0.00 37.69 4.61
3087 3249 4.669318 ACAATCTATCGTTGTCGGTACTG 58.331 43.478 0.00 0.00 34.93 2.74
3099 3261 3.243434 ACTGGCTACGGAACAATCTATCG 60.243 47.826 0.00 0.00 0.00 2.92
3135 3297 5.738208 GCATAGCAAATCTTTTAGCTGCCAT 60.738 40.000 0.00 0.00 37.94 4.40
3138 3300 4.929781 AGCATAGCAAATCTTTTAGCTGC 58.070 39.130 0.00 0.00 37.94 5.25
3154 3316 4.063689 CAATCCAGCAGGTAAGAGCATAG 58.936 47.826 0.00 0.00 35.89 2.23
3158 3320 2.284190 GACAATCCAGCAGGTAAGAGC 58.716 52.381 0.00 0.00 35.89 4.09
3284 3457 6.893958 AGTTGATTGCTTAATGAGAGTACG 57.106 37.500 0.00 0.00 0.00 3.67
3288 3461 7.606858 TCTGAAGTTGATTGCTTAATGAGAG 57.393 36.000 0.00 0.00 0.00 3.20
3289 3462 7.609146 ACATCTGAAGTTGATTGCTTAATGAGA 59.391 33.333 0.00 0.00 0.00 3.27
3334 3507 1.002257 TGCATGCCACCACTGTAGG 60.002 57.895 16.68 0.00 0.00 3.18
3389 3567 2.095364 GCAAAGAGTCATGCAACAGAGG 60.095 50.000 14.09 0.00 42.12 3.69
3467 3645 1.078848 AGCGTGTGGGAGAGATTGC 60.079 57.895 0.00 0.00 0.00 3.56
3478 3656 0.436150 CGACATGACAAGAGCGTGTG 59.564 55.000 0.00 0.00 35.75 3.82
3514 3692 7.787725 AAGATAACGGCAGGTTTAGATTAAG 57.212 36.000 0.00 0.00 40.09 1.85
3516 3694 7.332557 TGAAAGATAACGGCAGGTTTAGATTA 58.667 34.615 0.00 0.00 40.09 1.75
3517 3695 6.177610 TGAAAGATAACGGCAGGTTTAGATT 58.822 36.000 0.00 0.00 40.09 2.40
3563 3741 3.270877 CCGGTTGAAGTAATCCTTGGAG 58.729 50.000 0.00 0.00 32.03 3.86
3681 3859 4.430765 GCGGAGGAAGTCGGCGAA 62.431 66.667 12.92 0.00 41.20 4.70
3704 3882 2.309528 TGTCCGGATCAAAATCGAGG 57.690 50.000 7.81 0.00 33.88 4.63
3785 3963 6.348540 GCTTCTGAAGTTATTACTTGGTGGTG 60.349 42.308 17.97 0.00 44.51 4.17
3786 3964 5.705905 GCTTCTGAAGTTATTACTTGGTGGT 59.294 40.000 17.97 0.00 44.51 4.16
3787 3965 5.705441 TGCTTCTGAAGTTATTACTTGGTGG 59.295 40.000 17.97 0.00 44.51 4.61
3831 4016 4.704833 CACCCGGCCTCCTGTGTG 62.705 72.222 0.00 0.00 0.00 3.82
3845 4030 1.471676 CCGGAGCTGATGTCTAACACC 60.472 57.143 0.00 0.00 0.00 4.16
3903 4088 1.402325 CCGCATCATCGATTACCGCTA 60.402 52.381 0.00 0.00 38.37 4.26
3934 4119 3.307269 CCGGTGATGATGCTATGAGGATT 60.307 47.826 0.00 0.00 0.00 3.01
3938 4125 1.270465 TGCCGGTGATGATGCTATGAG 60.270 52.381 1.90 0.00 0.00 2.90
3952 4139 0.605319 AAACACACGATCATGCCGGT 60.605 50.000 1.90 4.66 0.00 5.28
3956 4143 2.725723 CACCAAAAACACACGATCATGC 59.274 45.455 0.00 0.00 0.00 4.06
3983 4172 2.064242 AACACACCCACTAGCCCACC 62.064 60.000 0.00 0.00 0.00 4.61
4090 4280 1.415659 AGCTGATAGCCAGATCACACC 59.584 52.381 0.00 0.00 45.78 4.16
4121 4313 2.096248 ACTCAACCAGCAAACGGAAAA 58.904 42.857 0.00 0.00 0.00 2.29
4224 4417 4.646945 TCTGAACCCAGCAACATGTAAAAA 59.353 37.500 0.00 0.00 40.20 1.94
4352 4545 9.702253 AACTCATTGGAGATTCTCTAACTACTA 57.298 33.333 13.90 0.00 44.26 1.82
4373 4571 5.530915 CAGGTGAACTTTTGTATGGAACTCA 59.469 40.000 0.00 0.00 0.00 3.41
4378 4576 6.039270 CACTTTCAGGTGAACTTTTGTATGGA 59.961 38.462 0.00 0.00 39.34 3.41
4384 4582 4.718940 ACCACTTTCAGGTGAACTTTTG 57.281 40.909 0.00 0.00 38.13 2.44
4397 4595 5.103290 TCGTTGATGCTAAAACCACTTTC 57.897 39.130 0.00 0.00 0.00 2.62
4425 4626 3.119495 ACGCTGGCATCTTCCATTTTTAC 60.119 43.478 0.00 0.00 35.22 2.01
4432 4633 1.269448 GAAAAACGCTGGCATCTTCCA 59.731 47.619 0.00 0.00 34.42 3.53
4437 4638 1.632422 CCATGAAAAACGCTGGCATC 58.368 50.000 0.00 0.00 0.00 3.91
4442 4643 3.801293 CAATTTGCCATGAAAAACGCTG 58.199 40.909 0.00 0.00 0.00 5.18
4444 4645 2.573282 GCAATTTGCCATGAAAAACGC 58.427 42.857 10.34 0.00 37.42 4.84
4473 4711 3.192844 CCATGCTTGCTGAAGAGATTTGT 59.807 43.478 0.00 0.00 0.00 2.83
4477 4715 1.340697 TGCCATGCTTGCTGAAGAGAT 60.341 47.619 0.00 0.00 0.00 2.75
4485 4723 2.029623 CTAGGATTTGCCATGCTTGCT 58.970 47.619 0.00 0.00 40.02 3.91
4488 4726 1.027357 CGCTAGGATTTGCCATGCTT 58.973 50.000 0.00 0.00 40.02 3.91
4527 4765 5.505489 CCAGCTTTTAAAACATGGCAAAACC 60.505 40.000 11.76 0.00 39.84 3.27
4529 4767 5.747951 CCAGCTTTTAAAACATGGCAAAA 57.252 34.783 11.76 0.00 0.00 2.44
4535 4773 3.637432 TGACGCCAGCTTTTAAAACATG 58.363 40.909 0.00 0.00 0.00 3.21
4537 4775 2.946329 TCTGACGCCAGCTTTTAAAACA 59.054 40.909 0.00 0.00 40.20 2.83
4542 4780 3.146066 ACAAATCTGACGCCAGCTTTTA 58.854 40.909 0.00 0.00 36.82 1.52
4547 4785 1.201921 CGTTACAAATCTGACGCCAGC 60.202 52.381 0.00 0.00 40.20 4.85
4551 4789 0.725117 CCCCGTTACAAATCTGACGC 59.275 55.000 0.00 0.00 34.41 5.19
4553 4791 2.027469 AGGACCCCGTTACAAATCTGAC 60.027 50.000 0.00 0.00 0.00 3.51
4564 4802 3.159472 GGAACAATTTTAGGACCCCGTT 58.841 45.455 0.00 0.00 0.00 4.44
4565 4803 2.377531 AGGAACAATTTTAGGACCCCGT 59.622 45.455 0.00 0.00 0.00 5.28
4579 4817 4.335416 CAAATGAGCCCTTAGAGGAACAA 58.665 43.478 0.00 0.00 37.67 2.83
4580 4818 3.308402 CCAAATGAGCCCTTAGAGGAACA 60.308 47.826 0.00 0.00 37.67 3.18
4587 4825 2.170166 TGCAACCAAATGAGCCCTTAG 58.830 47.619 0.00 0.00 0.00 2.18
4588 4826 2.300956 TGCAACCAAATGAGCCCTTA 57.699 45.000 0.00 0.00 0.00 2.69
4589 4827 1.276989 CATGCAACCAAATGAGCCCTT 59.723 47.619 0.00 0.00 0.00 3.95
4590 4828 0.899720 CATGCAACCAAATGAGCCCT 59.100 50.000 0.00 0.00 0.00 5.19
4591 4829 0.108041 CCATGCAACCAAATGAGCCC 60.108 55.000 0.00 0.00 0.00 5.19
4592 4830 0.609662 ACCATGCAACCAAATGAGCC 59.390 50.000 0.00 0.00 0.00 4.70
4593 4831 3.491447 GGATACCATGCAACCAAATGAGC 60.491 47.826 0.00 0.00 0.00 4.26
4594 4832 4.311816 GGATACCATGCAACCAAATGAG 57.688 45.455 0.00 0.00 0.00 2.90
4620 4858 1.379146 GGGAATAAGCGGGGATCCC 59.621 63.158 23.95 23.95 42.74 3.85
4621 4859 0.036875 CAGGGAATAAGCGGGGATCC 59.963 60.000 1.92 1.92 0.00 3.36
4622 4860 0.036875 CCAGGGAATAAGCGGGGATC 59.963 60.000 0.00 0.00 0.00 3.36
4623 4861 2.069165 GCCAGGGAATAAGCGGGGAT 62.069 60.000 0.00 0.00 0.00 3.85
4624 4862 2.752807 GCCAGGGAATAAGCGGGGA 61.753 63.158 0.00 0.00 0.00 4.81
4625 4863 2.203351 GCCAGGGAATAAGCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
4626 4864 2.203351 GGCCAGGGAATAAGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
4627 4865 2.203351 GGGCCAGGGAATAAGCGG 60.203 66.667 4.39 0.00 0.00 5.52
4628 4866 2.203351 GGGGCCAGGGAATAAGCG 60.203 66.667 4.39 0.00 0.00 4.68
4629 4867 1.152673 CTGGGGCCAGGGAATAAGC 60.153 63.158 4.39 0.00 40.17 3.09
4630 4868 0.926293 TTCTGGGGCCAGGGAATAAG 59.074 55.000 4.39 0.00 43.75 1.73
4631 4869 1.006639 GTTTCTGGGGCCAGGGAATAA 59.993 52.381 4.39 0.00 43.75 1.40
4632 4870 0.629058 GTTTCTGGGGCCAGGGAATA 59.371 55.000 4.39 0.00 43.75 1.75
4633 4871 1.388133 GTTTCTGGGGCCAGGGAAT 59.612 57.895 4.39 0.00 43.75 3.01
4634 4872 2.851045 GTTTCTGGGGCCAGGGAA 59.149 61.111 4.39 3.25 43.75 3.97
4635 4873 3.264845 GGTTTCTGGGGCCAGGGA 61.265 66.667 4.39 0.00 43.75 4.20
4636 4874 2.934838 ATGGTTTCTGGGGCCAGGG 61.935 63.158 4.39 0.00 43.75 4.45
4637 4875 1.683365 CATGGTTTCTGGGGCCAGG 60.683 63.158 4.39 0.00 43.75 4.45
4638 4876 1.683365 CCATGGTTTCTGGGGCCAG 60.683 63.158 4.39 0.63 44.86 4.85
4639 4877 2.444696 CCATGGTTTCTGGGGCCA 59.555 61.111 4.39 0.00 36.64 5.36
4644 4882 0.032813 ATCTGGCCCATGGTTTCTGG 60.033 55.000 11.73 0.00 0.00 3.86
4645 4883 1.341285 TGATCTGGCCCATGGTTTCTG 60.341 52.381 11.73 4.11 0.00 3.02
4646 4884 1.002069 TGATCTGGCCCATGGTTTCT 58.998 50.000 11.73 0.00 0.00 2.52
4647 4885 1.396653 CTGATCTGGCCCATGGTTTC 58.603 55.000 11.73 0.00 0.00 2.78
4648 4886 0.685458 GCTGATCTGGCCCATGGTTT 60.685 55.000 11.73 0.00 0.00 3.27
4649 4887 1.076485 GCTGATCTGGCCCATGGTT 60.076 57.895 11.73 0.00 0.00 3.67
4650 4888 2.599597 GCTGATCTGGCCCATGGT 59.400 61.111 11.73 0.00 0.00 3.55
4651 4889 2.203451 GGCTGATCTGGCCCATGG 60.203 66.667 14.35 4.14 43.49 3.66
4658 4896 3.089874 TTCCCGGGGCTGATCTGG 61.090 66.667 23.50 0.00 0.00 3.86
4659 4897 2.317149 GACTTCCCGGGGCTGATCTG 62.317 65.000 23.50 4.62 0.00 2.90
4660 4898 2.041265 ACTTCCCGGGGCTGATCT 59.959 61.111 23.50 0.00 0.00 2.75
4661 4899 1.910580 TTGACTTCCCGGGGCTGATC 61.911 60.000 23.50 12.13 0.00 2.92
4662 4900 1.923395 TTGACTTCCCGGGGCTGAT 60.923 57.895 23.50 1.35 0.00 2.90
4663 4901 2.528127 TTGACTTCCCGGGGCTGA 60.528 61.111 23.50 0.00 0.00 4.26
4664 4902 2.359975 GTTGACTTCCCGGGGCTG 60.360 66.667 23.50 13.63 0.00 4.85
4665 4903 3.647771 GGTTGACTTCCCGGGGCT 61.648 66.667 23.50 2.24 0.00 5.19
4666 4904 3.282374 ATGGTTGACTTCCCGGGGC 62.282 63.158 23.50 8.68 0.00 5.80
4667 4905 1.378514 CATGGTTGACTTCCCGGGG 60.379 63.158 23.50 6.77 0.00 5.73
4668 4906 1.378514 CCATGGTTGACTTCCCGGG 60.379 63.158 16.85 16.85 0.00 5.73
4669 4907 2.046285 GCCATGGTTGACTTCCCGG 61.046 63.158 14.67 0.00 0.00 5.73
4670 4908 0.680921 ATGCCATGGTTGACTTCCCG 60.681 55.000 14.67 0.00 0.00 5.14
4671 4909 1.560505 AATGCCATGGTTGACTTCCC 58.439 50.000 14.67 0.00 0.00 3.97
4672 4910 2.354003 CCAAATGCCATGGTTGACTTCC 60.354 50.000 14.67 0.00 33.08 3.46
4673 4911 2.354003 CCCAAATGCCATGGTTGACTTC 60.354 50.000 14.67 0.00 36.14 3.01
4674 4912 1.624813 CCCAAATGCCATGGTTGACTT 59.375 47.619 14.67 0.00 36.14 3.01
4675 4913 1.269012 CCCAAATGCCATGGTTGACT 58.731 50.000 14.67 0.00 36.14 3.41
4676 4914 0.391528 GCCCAAATGCCATGGTTGAC 60.392 55.000 14.67 2.62 36.14 3.18
4677 4915 0.835115 TGCCCAAATGCCATGGTTGA 60.835 50.000 14.67 0.00 36.14 3.18
4678 4916 0.674269 GTGCCCAAATGCCATGGTTG 60.674 55.000 14.67 10.04 36.14 3.77
4679 4917 1.678724 GTGCCCAAATGCCATGGTT 59.321 52.632 14.67 0.00 36.14 3.67
4680 4918 2.292559 GGTGCCCAAATGCCATGGT 61.293 57.895 14.67 0.00 36.14 3.55
4681 4919 2.585698 GGTGCCCAAATGCCATGG 59.414 61.111 7.63 7.63 37.71 3.66
4682 4920 2.291801 TGGGTGCCCAAATGCCATG 61.292 57.895 7.63 0.00 44.12 3.66
4683 4921 2.122280 TGGGTGCCCAAATGCCAT 59.878 55.556 7.63 0.00 44.12 4.40
4692 4930 4.489771 CCGACAGGATGGGTGCCC 62.490 72.222 0.00 0.00 43.62 5.36
4693 4931 4.489771 CCCGACAGGATGGGTGCC 62.490 72.222 0.00 0.00 43.62 5.01
4694 4932 4.489771 CCCCGACAGGATGGGTGC 62.490 72.222 0.00 0.00 44.44 5.01
4695 4933 2.297895 TTCCCCGACAGGATGGGTG 61.298 63.158 0.00 0.00 44.44 4.61
4696 4934 2.124085 TTCCCCGACAGGATGGGT 59.876 61.111 0.00 0.00 44.44 4.51
4697 4935 2.590092 GTTCCCCGACAGGATGGG 59.410 66.667 0.00 0.00 43.62 4.00
4698 4936 2.590092 GGTTCCCCGACAGGATGG 59.410 66.667 0.00 0.00 43.62 3.51
4699 4937 2.590092 GGGTTCCCCGACAGGATG 59.410 66.667 0.00 0.00 41.02 3.51
4700 4938 2.691252 GGGGTTCCCCGACAGGAT 60.691 66.667 11.50 0.00 46.66 3.24
4708 4946 3.725032 GAAGGGTCGGGGTTCCCC 61.725 72.222 16.52 16.52 44.40 4.81
4709 4947 3.725032 GGAAGGGTCGGGGTTCCC 61.725 72.222 0.00 0.00 43.71 3.97
4710 4948 3.725032 GGGAAGGGTCGGGGTTCC 61.725 72.222 0.00 0.00 39.31 3.62
4711 4949 3.725032 GGGGAAGGGTCGGGGTTC 61.725 72.222 0.00 0.00 0.00 3.62
4720 4958 4.442454 GAAAGGCCGGGGGAAGGG 62.442 72.222 2.18 0.00 0.00 3.95
4721 4959 4.442454 GGAAAGGCCGGGGGAAGG 62.442 72.222 2.18 0.00 0.00 3.46
4722 4960 4.442454 GGGAAAGGCCGGGGGAAG 62.442 72.222 2.18 0.00 37.63 3.46
4728 4966 2.076184 TATCCCAGGGAAAGGCCGG 61.076 63.158 13.94 0.00 34.34 6.13
4729 4967 1.148498 GTATCCCAGGGAAAGGCCG 59.852 63.158 13.94 0.00 34.34 6.13
4730 4968 0.183731 CTGTATCCCAGGGAAAGGCC 59.816 60.000 13.94 0.00 37.54 5.19
4731 4969 0.919710 ACTGTATCCCAGGGAAAGGC 59.080 55.000 13.94 3.63 46.06 4.35
4732 4970 2.092375 GGAACTGTATCCCAGGGAAAGG 60.092 54.545 13.94 5.94 46.06 3.11
4733 4971 2.576191 TGGAACTGTATCCCAGGGAAAG 59.424 50.000 13.94 13.16 46.06 2.62
4734 4972 2.307686 GTGGAACTGTATCCCAGGGAAA 59.692 50.000 13.94 0.00 46.06 3.13
4735 4973 1.913419 GTGGAACTGTATCCCAGGGAA 59.087 52.381 13.94 0.00 46.06 3.97
4736 4974 1.580059 GTGGAACTGTATCCCAGGGA 58.420 55.000 11.90 11.90 46.06 4.20
4737 4975 0.178068 CGTGGAACTGTATCCCAGGG 59.822 60.000 0.00 0.00 46.06 4.45
4738 4976 1.134788 GTCGTGGAACTGTATCCCAGG 60.135 57.143 9.00 9.00 46.06 4.45
4740 4978 1.822990 GAGTCGTGGAACTGTATCCCA 59.177 52.381 6.57 0.00 38.82 4.37
4741 4979 1.202268 CGAGTCGTGGAACTGTATCCC 60.202 57.143 3.82 0.00 38.82 3.85
4742 4980 1.202268 CCGAGTCGTGGAACTGTATCC 60.202 57.143 12.31 3.11 40.10 2.59
4743 4981 1.471684 ACCGAGTCGTGGAACTGTATC 59.528 52.381 12.31 0.00 31.75 2.24
4744 4982 1.542492 ACCGAGTCGTGGAACTGTAT 58.458 50.000 12.31 0.00 31.75 2.29
4745 4983 2.079158 CTACCGAGTCGTGGAACTGTA 58.921 52.381 12.31 3.78 31.75 2.74
4746 4984 0.879765 CTACCGAGTCGTGGAACTGT 59.120 55.000 12.31 2.71 31.75 3.55
4747 4985 1.162698 TCTACCGAGTCGTGGAACTG 58.837 55.000 12.31 0.00 31.75 3.16
4748 4986 2.015587 GATCTACCGAGTCGTGGAACT 58.984 52.381 12.31 0.00 31.75 3.01
4749 4987 1.267932 CGATCTACCGAGTCGTGGAAC 60.268 57.143 12.31 5.44 0.00 3.62
4750 4988 1.012086 CGATCTACCGAGTCGTGGAA 58.988 55.000 12.31 0.00 0.00 3.53
4751 4989 0.812811 CCGATCTACCGAGTCGTGGA 60.813 60.000 12.31 7.62 33.77 4.02
4752 4990 1.647629 CCGATCTACCGAGTCGTGG 59.352 63.158 12.31 0.00 33.77 4.94
4753 4991 0.812811 TCCCGATCTACCGAGTCGTG 60.813 60.000 12.31 5.64 33.77 4.35
4754 4992 0.107508 TTCCCGATCTACCGAGTCGT 60.108 55.000 12.31 2.35 33.77 4.34
4755 4993 2.699073 TTCCCGATCTACCGAGTCG 58.301 57.895 5.29 5.29 35.29 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.