Multiple sequence alignment - TraesCS5B01G354600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G354600 chr5B 100.000 2708 0 0 1 2708 533565741 533563034 0.000000e+00 5001.0
1 TraesCS5B01G354600 chr5B 87.485 1718 149 31 203 1888 533515388 533513705 0.000000e+00 1921.0
2 TraesCS5B01G354600 chr5B 88.936 1428 111 21 476 1876 533572836 533571429 0.000000e+00 1718.0
3 TraesCS5B01G354600 chr5B 82.863 1418 190 33 476 1869 533451149 533449761 0.000000e+00 1223.0
4 TraesCS5B01G354600 chr5B 77.344 1205 213 37 553 1710 532550299 532551490 0.000000e+00 658.0
5 TraesCS5B01G354600 chr5B 92.732 399 29 0 63 461 533573219 533572821 6.500000e-161 577.0
6 TraesCS5B01G354600 chr5B 83.042 401 65 2 61 461 533494386 533493989 7.130000e-96 361.0
7 TraesCS5B01G354600 chr5B 85.227 352 20 6 2294 2637 533571202 533570875 1.550000e-87 333.0
8 TraesCS5B01G354600 chr5B 95.139 144 5 1 1980 2121 533571368 533571225 2.710000e-55 226.0
9 TraesCS5B01G354600 chr5D 90.523 1414 105 13 476 1869 438722143 438720739 0.000000e+00 1842.0
10 TraesCS5B01G354600 chr5D 82.287 1434 179 52 476 1869 438569240 438567842 0.000000e+00 1171.0
11 TraesCS5B01G354600 chr5D 82.496 1194 177 18 543 1710 438544885 438543698 0.000000e+00 1018.0
12 TraesCS5B01G354600 chr5D 82.462 1186 174 20 543 1707 438454923 438453751 0.000000e+00 1007.0
13 TraesCS5B01G354600 chr5D 90.276 689 60 4 1182 1869 438624306 438623624 0.000000e+00 894.0
14 TraesCS5B01G354600 chr5D 86.759 725 56 18 476 1179 438658258 438657553 0.000000e+00 771.0
15 TraesCS5B01G354600 chr5D 91.729 399 33 0 63 461 438722526 438722128 3.050000e-154 555.0
16 TraesCS5B01G354600 chr5D 91.250 400 28 4 63 461 438658636 438658243 3.070000e-149 538.0
17 TraesCS5B01G354600 chr5D 82.836 402 65 3 61 461 438589796 438589398 9.220000e-95 357.0
18 TraesCS5B01G354600 chr5D 91.558 154 7 6 1860 2008 135659644 135659492 9.830000e-50 207.0
19 TraesCS5B01G354600 chr5D 81.116 233 41 3 208 439 438559078 438558848 1.660000e-42 183.0
20 TraesCS5B01G354600 chr5D 83.824 68 4 3 2383 2443 438578790 438578723 1.050000e-04 58.4
21 TraesCS5B01G354600 chr5A 89.014 1420 112 15 476 1869 554235941 554234540 0.000000e+00 1718.0
22 TraesCS5B01G354600 chr5A 89.662 977 73 13 476 1430 554218466 554217496 0.000000e+00 1219.0
23 TraesCS5B01G354600 chr5A 82.489 1422 190 42 476 1869 554182571 554181181 0.000000e+00 1192.0
24 TraesCS5B01G354600 chr5A 82.235 1351 191 33 476 1791 554201084 554199748 0.000000e+00 1120.0
25 TraesCS5B01G354600 chr5A 92.481 399 30 0 63 461 554236324 554235926 3.020000e-159 571.0
26 TraesCS5B01G354600 chr5A 91.479 399 32 2 63 461 554218847 554218451 5.100000e-152 547.0
27 TraesCS5B01G354600 chr5A 86.391 338 15 10 2292 2625 554234389 554234079 9.290000e-90 340.0
28 TraesCS5B01G354600 chr5A 88.136 59 2 3 2241 2295 554234416 554234359 6.260000e-07 65.8
29 TraesCS5B01G354600 chr2B 78.311 1291 220 41 483 1727 65047678 65048954 0.000000e+00 778.0
30 TraesCS5B01G354600 chr2B 89.375 160 11 6 1833 1989 620596834 620596678 2.130000e-46 196.0
31 TraesCS5B01G354600 chr2B 90.278 144 14 0 2103 2246 77137528 77137385 3.560000e-44 189.0
32 TraesCS5B01G354600 chr7A 95.489 133 4 2 1857 1989 504961193 504961063 7.600000e-51 211.0
33 TraesCS5B01G354600 chr7A 92.029 138 11 0 2118 2255 504961061 504961198 7.650000e-46 195.0
34 TraesCS5B01G354600 chr7A 95.238 42 1 1 2059 2099 501155494 501155535 6.260000e-07 65.8
35 TraesCS5B01G354600 chr1B 94.815 135 6 1 1862 1996 543038902 543038769 2.730000e-50 209.0
36 TraesCS5B01G354600 chr1B 92.086 139 10 1 2121 2259 332086457 332086320 7.650000e-46 195.0
37 TraesCS5B01G354600 chr1B 97.500 40 1 0 2058 2097 48599884 48599923 4.840000e-08 69.4
38 TraesCS5B01G354600 chr1B 97.500 40 1 0 2058 2097 48630920 48630959 4.840000e-08 69.4
39 TraesCS5B01G354600 chr4A 92.000 150 8 4 1859 2006 236198093 236198240 9.830000e-50 207.0
40 TraesCS5B01G354600 chr1A 94.776 134 6 1 1858 1991 481650971 481651103 9.830000e-50 207.0
41 TraesCS5B01G354600 chr1A 88.136 59 6 1 2063 2120 28710544 28710486 4.840000e-08 69.4
42 TraesCS5B01G354600 chr1A 97.436 39 1 0 2060 2098 494443776 494443738 1.740000e-07 67.6
43 TraesCS5B01G354600 chr7B 91.447 152 9 4 2096 2246 126893099 126893247 3.530000e-49 206.0
44 TraesCS5B01G354600 chr7B 93.333 135 8 1 2121 2254 661738924 661739058 5.910000e-47 198.0
45 TraesCS5B01G354600 chr7B 95.000 40 2 0 2059 2098 450642110 450642149 2.250000e-06 63.9
46 TraesCS5B01G354600 chr3D 92.958 142 7 3 1860 2000 48248393 48248254 1.270000e-48 204.0
47 TraesCS5B01G354600 chr3D 97.297 37 1 0 2063 2099 105437293 105437329 2.250000e-06 63.9
48 TraesCS5B01G354600 chr2D 92.958 142 7 3 1860 2000 318604296 318604157 1.270000e-48 204.0
49 TraesCS5B01G354600 chr2D 93.284 134 9 0 2121 2254 619720671 619720538 5.910000e-47 198.0
50 TraesCS5B01G354600 chr2D 90.132 152 11 4 2096 2246 452294072 452294220 7.650000e-46 195.0
51 TraesCS5B01G354600 chr3B 94.615 130 7 0 2121 2250 818752691 818752820 4.570000e-48 202.0
52 TraesCS5B01G354600 chr3B 90.196 153 11 4 1856 2008 568427067 568427215 2.130000e-46 196.0
53 TraesCS5B01G354600 chr3A 89.542 153 14 2 2121 2271 468726797 468726645 2.750000e-45 193.0
54 TraesCS5B01G354600 chr6B 97.872 47 1 0 2062 2108 29270043 29269997 6.210000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G354600 chr5B 533563034 533565741 2707 True 5001.0 5001 100.0000 1 2708 1 chr5B.!!$R4 2707
1 TraesCS5B01G354600 chr5B 533513705 533515388 1683 True 1921.0 1921 87.4850 203 1888 1 chr5B.!!$R3 1685
2 TraesCS5B01G354600 chr5B 533449761 533451149 1388 True 1223.0 1223 82.8630 476 1869 1 chr5B.!!$R1 1393
3 TraesCS5B01G354600 chr5B 533570875 533573219 2344 True 713.5 1718 90.5085 63 2637 4 chr5B.!!$R5 2574
4 TraesCS5B01G354600 chr5B 532550299 532551490 1191 False 658.0 658 77.3440 553 1710 1 chr5B.!!$F1 1157
5 TraesCS5B01G354600 chr5D 438720739 438722526 1787 True 1198.5 1842 91.1260 63 1869 2 chr5D.!!$R10 1806
6 TraesCS5B01G354600 chr5D 438567842 438569240 1398 True 1171.0 1171 82.2870 476 1869 1 chr5D.!!$R5 1393
7 TraesCS5B01G354600 chr5D 438543698 438544885 1187 True 1018.0 1018 82.4960 543 1710 1 chr5D.!!$R3 1167
8 TraesCS5B01G354600 chr5D 438453751 438454923 1172 True 1007.0 1007 82.4620 543 1707 1 chr5D.!!$R2 1164
9 TraesCS5B01G354600 chr5D 438623624 438624306 682 True 894.0 894 90.2760 1182 1869 1 chr5D.!!$R8 687
10 TraesCS5B01G354600 chr5D 438657553 438658636 1083 True 654.5 771 89.0045 63 1179 2 chr5D.!!$R9 1116
11 TraesCS5B01G354600 chr5A 554181181 554182571 1390 True 1192.0 1192 82.4890 476 1869 1 chr5A.!!$R1 1393
12 TraesCS5B01G354600 chr5A 554199748 554201084 1336 True 1120.0 1120 82.2350 476 1791 1 chr5A.!!$R2 1315
13 TraesCS5B01G354600 chr5A 554217496 554218847 1351 True 883.0 1219 90.5705 63 1430 2 chr5A.!!$R3 1367
14 TraesCS5B01G354600 chr5A 554234079 554236324 2245 True 673.7 1718 89.0055 63 2625 4 chr5A.!!$R4 2562
15 TraesCS5B01G354600 chr2B 65047678 65048954 1276 False 778.0 778 78.3110 483 1727 1 chr2B.!!$F1 1244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 1.583556 ATGGTGGTAGATGTGCCTCA 58.416 50.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2116 0.106167 TGACTACTCCCTCCATCCGG 60.106 60.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.582657 TTATATCTCAAGGGATAGCAGTACTC 57.417 38.462 0.00 0.00 32.59 2.59
49 50 4.528076 TCTCAAGGGATAGCAGTACTCT 57.472 45.455 0.00 0.00 0.00 3.24
50 51 4.465886 TCTCAAGGGATAGCAGTACTCTC 58.534 47.826 0.00 0.00 0.00 3.20
51 52 4.079730 TCTCAAGGGATAGCAGTACTCTCA 60.080 45.833 0.00 0.00 0.00 3.27
52 53 4.610333 TCAAGGGATAGCAGTACTCTCAA 58.390 43.478 0.00 0.00 0.00 3.02
53 54 4.646945 TCAAGGGATAGCAGTACTCTCAAG 59.353 45.833 0.00 0.00 0.00 3.02
54 55 4.258457 AGGGATAGCAGTACTCTCAAGT 57.742 45.455 0.00 0.00 39.66 3.16
55 56 4.211920 AGGGATAGCAGTACTCTCAAGTC 58.788 47.826 0.00 0.00 36.92 3.01
56 57 4.079443 AGGGATAGCAGTACTCTCAAGTCT 60.079 45.833 0.00 0.00 36.92 3.24
57 58 5.132985 AGGGATAGCAGTACTCTCAAGTCTA 59.867 44.000 0.00 0.00 36.92 2.59
58 59 5.239963 GGGATAGCAGTACTCTCAAGTCTAC 59.760 48.000 0.00 0.00 36.92 2.59
59 60 6.059484 GGATAGCAGTACTCTCAAGTCTACT 58.941 44.000 0.00 0.00 36.92 2.57
60 61 7.218614 GGATAGCAGTACTCTCAAGTCTACTA 58.781 42.308 0.00 0.00 36.92 1.82
61 62 7.881232 GGATAGCAGTACTCTCAAGTCTACTAT 59.119 40.741 0.00 0.00 36.92 2.12
79 80 1.583556 ATGGTGGTAGATGTGCCTCA 58.416 50.000 0.00 0.00 0.00 3.86
112 113 6.716934 TCCTCTAGTTCCATGAGTTCATAC 57.283 41.667 0.00 0.00 34.26 2.39
116 117 7.989741 CCTCTAGTTCCATGAGTTCATACATTT 59.010 37.037 0.00 0.00 34.26 2.32
200 202 8.604640 ATTATTGTGATGTGCTCATTAGAGAG 57.395 34.615 2.26 0.00 44.98 3.20
201 203 5.665916 TTGTGATGTGCTCATTAGAGAGA 57.334 39.130 2.26 0.00 44.98 3.10
269 271 7.362142 GGGACAAAGCGAAAGAAGATAAGATTT 60.362 37.037 0.00 0.00 0.00 2.17
314 316 7.135591 TGAATTTGAAAATGAAAACCCTCCT 57.864 32.000 0.00 0.00 0.00 3.69
335 337 7.255520 CCTCCTCATGATCAAGAATTTCCATTC 60.256 40.741 0.00 0.00 39.45 2.67
381 383 4.338118 TCACAACCCACAATTTCTCTGAAC 59.662 41.667 0.00 0.00 0.00 3.18
382 384 4.339247 CACAACCCACAATTTCTCTGAACT 59.661 41.667 0.00 0.00 0.00 3.01
398 400 2.613595 TGAACTATGCATGATTGGACGC 59.386 45.455 10.16 0.00 0.00 5.19
472 475 9.893305 CCTAGTATTAATTCTTTATTTTGCGGG 57.107 33.333 0.00 0.00 0.00 6.13
480 483 4.258543 TCTTTATTTTGCGGGTGTCCTAG 58.741 43.478 0.00 0.00 0.00 3.02
608 622 6.545666 TCAAGAGGCTAAGTAGAGATTCTCAG 59.454 42.308 15.83 5.20 32.06 3.35
618 632 3.936564 AGAGATTCTCAGCAAGGAACAC 58.063 45.455 15.83 0.00 32.06 3.32
619 633 2.670414 GAGATTCTCAGCAAGGAACACG 59.330 50.000 8.84 0.00 0.00 4.49
811 838 9.956720 ATGATTTCTAAGACAACTTGAACTTTG 57.043 29.630 0.00 3.07 37.53 2.77
815 842 9.620660 TTTCTAAGACAACTTGAACTTTGTTTC 57.379 29.630 0.00 0.00 36.06 2.78
843 883 9.683069 TTTTTAGATGAGTCAAGAAAATTGCTC 57.317 29.630 0.00 0.00 0.00 4.26
888 928 7.487822 TCATATAATCAAAGGGGTTGCAAAA 57.512 32.000 0.00 0.00 37.13 2.44
1011 1051 3.556213 CGGATTTTGGTATGGCGAGGATA 60.556 47.826 0.00 0.00 0.00 2.59
1030 1070 5.531287 AGGATATTTGGCGATAACTTGGAAC 59.469 40.000 0.00 0.00 0.00 3.62
1068 1108 5.827797 ACATGTTGTTGGAACATAGTGAGTT 59.172 36.000 0.00 0.00 38.69 3.01
1179 1242 2.357009 CTGAGTATGCAATGGAAGGTGC 59.643 50.000 0.00 0.00 41.29 5.01
1246 1313 9.401058 GTACTAGAGGTTGTAACTGGTATAAGA 57.599 37.037 0.00 0.00 32.27 2.10
1248 1315 8.747471 ACTAGAGGTTGTAACTGGTATAAGAAC 58.253 37.037 0.00 0.00 0.00 3.01
1628 1758 1.197036 GGCCTACTTTGCGAGACAAAC 59.803 52.381 0.00 0.00 43.35 2.93
1710 1840 4.339814 ACTGAGATAGAGGGACGATGAAAC 59.660 45.833 0.00 0.00 0.00 2.78
1805 1944 8.902540 TGTAAAATGTACTATGGCTCAATAGG 57.097 34.615 0.00 0.00 34.91 2.57
1814 1953 1.573436 GCTCAATAGGCAGCGATGC 59.427 57.895 19.23 19.23 0.00 3.91
1827 1967 3.264104 CAGCGATGCCATTTTCCAAAAT 58.736 40.909 0.00 0.00 39.07 1.82
1829 1969 5.051816 CAGCGATGCCATTTTCCAAAATAT 58.948 37.500 0.00 0.00 36.52 1.28
1873 2016 3.057033 TGTTGCTTAGTACTCCTTCCGTC 60.057 47.826 0.00 0.00 0.00 4.79
1875 2018 1.065251 GCTTAGTACTCCTTCCGTCCG 59.935 57.143 0.00 0.00 0.00 4.79
1876 2019 2.636830 CTTAGTACTCCTTCCGTCCGA 58.363 52.381 0.00 0.00 0.00 4.55
1877 2020 2.787473 TAGTACTCCTTCCGTCCGAA 57.213 50.000 0.00 0.00 0.00 4.30
1879 2022 2.242043 AGTACTCCTTCCGTCCGAAAA 58.758 47.619 0.00 0.00 0.00 2.29
1884 2027 3.260128 ACTCCTTCCGTCCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
1888 2031 3.663995 TCCGTCCGAAAATACTTGTCA 57.336 42.857 0.00 0.00 0.00 3.58
1889 2032 4.196626 TCCGTCCGAAAATACTTGTCAT 57.803 40.909 0.00 0.00 0.00 3.06
1890 2033 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1891 2034 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1893 2036 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1894 2037 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1896 2039 7.537306 CGTCCGAAAATACTTGTCATCAAAATT 59.463 33.333 0.00 0.00 32.87 1.82
1898 2041 8.572185 TCCGAAAATACTTGTCATCAAAATTGA 58.428 29.630 0.00 0.00 42.14 2.57
1943 2086 8.628280 AGAACTAAAATACGTCTAGATACACCC 58.372 37.037 0.00 0.00 0.00 4.61
1944 2087 7.282332 ACTAAAATACGTCTAGATACACCCC 57.718 40.000 0.00 0.00 0.00 4.95
1945 2088 5.541953 AAAATACGTCTAGATACACCCCC 57.458 43.478 0.00 0.00 0.00 5.40
1946 2089 4.466255 AATACGTCTAGATACACCCCCT 57.534 45.455 0.00 0.00 0.00 4.79
1947 2090 2.842645 ACGTCTAGATACACCCCCTT 57.157 50.000 0.00 0.00 0.00 3.95
1948 2091 3.111741 ACGTCTAGATACACCCCCTTT 57.888 47.619 0.00 0.00 0.00 3.11
1949 2092 3.447950 ACGTCTAGATACACCCCCTTTT 58.552 45.455 0.00 0.00 0.00 2.27
1950 2093 4.613437 ACGTCTAGATACACCCCCTTTTA 58.387 43.478 0.00 0.00 0.00 1.52
1951 2094 5.214293 ACGTCTAGATACACCCCCTTTTAT 58.786 41.667 0.00 0.00 0.00 1.40
1952 2095 5.303845 ACGTCTAGATACACCCCCTTTTATC 59.696 44.000 0.00 0.00 0.00 1.75
1953 2096 5.279356 CGTCTAGATACACCCCCTTTTATCC 60.279 48.000 0.00 0.00 0.00 2.59
1954 2097 5.605488 GTCTAGATACACCCCCTTTTATCCA 59.395 44.000 0.00 0.00 0.00 3.41
1955 2098 6.272558 GTCTAGATACACCCCCTTTTATCCAT 59.727 42.308 0.00 0.00 0.00 3.41
1956 2099 6.855061 TCTAGATACACCCCCTTTTATCCATT 59.145 38.462 0.00 0.00 0.00 3.16
1957 2100 6.355588 AGATACACCCCCTTTTATCCATTT 57.644 37.500 0.00 0.00 0.00 2.32
1958 2101 6.752091 AGATACACCCCCTTTTATCCATTTT 58.248 36.000 0.00 0.00 0.00 1.82
1959 2102 6.611236 AGATACACCCCCTTTTATCCATTTTG 59.389 38.462 0.00 0.00 0.00 2.44
1960 2103 4.757692 ACACCCCCTTTTATCCATTTTGA 58.242 39.130 0.00 0.00 0.00 2.69
1961 2104 5.349690 ACACCCCCTTTTATCCATTTTGAT 58.650 37.500 0.00 0.00 0.00 2.57
1962 2105 5.189539 ACACCCCCTTTTATCCATTTTGATG 59.810 40.000 0.00 0.00 0.00 3.07
1963 2106 5.424895 CACCCCCTTTTATCCATTTTGATGA 59.575 40.000 0.00 0.00 0.00 2.92
1964 2107 5.425217 ACCCCCTTTTATCCATTTTGATGAC 59.575 40.000 0.00 0.00 0.00 3.06
1965 2108 5.424895 CCCCCTTTTATCCATTTTGATGACA 59.575 40.000 0.00 0.00 0.00 3.58
1966 2109 6.070309 CCCCCTTTTATCCATTTTGATGACAA 60.070 38.462 0.00 0.00 0.00 3.18
1967 2110 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
1968 2111 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
1969 2112 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
1975 2118 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
1976 2119 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
1977 2120 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
1978 2121 7.416664 CCATTTTGATGACAAGTATTTCCGGAT 60.417 37.037 4.15 0.00 37.32 4.18
2119 2262 2.503895 ACTCCCTTTTGATGCAGAGG 57.496 50.000 0.00 0.00 0.00 3.69
2120 2263 1.988107 ACTCCCTTTTGATGCAGAGGA 59.012 47.619 0.00 0.00 0.00 3.71
2121 2264 2.290577 ACTCCCTTTTGATGCAGAGGAC 60.291 50.000 0.00 0.00 0.00 3.85
2122 2265 1.988107 TCCCTTTTGATGCAGAGGACT 59.012 47.619 0.00 0.00 0.00 3.85
2123 2266 2.026822 TCCCTTTTGATGCAGAGGACTC 60.027 50.000 0.00 0.00 0.00 3.36
2124 2267 2.363683 CCTTTTGATGCAGAGGACTCC 58.636 52.381 0.00 0.00 0.00 3.85
2125 2268 2.363683 CTTTTGATGCAGAGGACTCCC 58.636 52.381 0.00 0.00 0.00 4.30
2127 2270 1.661463 TTGATGCAGAGGACTCCCTT 58.339 50.000 0.00 0.00 44.53 3.95
2128 2271 1.198713 TGATGCAGAGGACTCCCTTC 58.801 55.000 0.00 0.00 44.53 3.46
2129 2272 0.103937 GATGCAGAGGACTCCCTTCG 59.896 60.000 0.00 0.00 44.53 3.79
2130 2273 0.616111 ATGCAGAGGACTCCCTTCGT 60.616 55.000 0.00 0.00 44.53 3.85
2131 2274 1.251527 TGCAGAGGACTCCCTTCGTC 61.252 60.000 0.00 0.00 44.53 4.20
2135 2278 2.362120 GGACTCCCTTCGTCCGGA 60.362 66.667 0.00 0.00 41.29 5.14
2136 2279 1.980772 GGACTCCCTTCGTCCGGAA 60.981 63.158 5.23 0.00 41.29 4.30
2137 2280 1.538687 GGACTCCCTTCGTCCGGAAA 61.539 60.000 5.23 0.00 41.29 3.13
2138 2281 0.535797 GACTCCCTTCGTCCGGAAAT 59.464 55.000 5.23 0.00 33.34 2.17
2139 2282 1.753073 GACTCCCTTCGTCCGGAAATA 59.247 52.381 5.23 0.00 33.34 1.40
2140 2283 2.364647 GACTCCCTTCGTCCGGAAATAT 59.635 50.000 5.23 0.00 33.34 1.28
2141 2284 2.770232 ACTCCCTTCGTCCGGAAATATT 59.230 45.455 5.23 0.00 33.34 1.28
2142 2285 3.199289 ACTCCCTTCGTCCGGAAATATTT 59.801 43.478 5.23 0.00 33.34 1.40
2143 2286 3.537580 TCCCTTCGTCCGGAAATATTTG 58.462 45.455 5.23 0.00 33.34 2.32
2144 2287 3.054948 TCCCTTCGTCCGGAAATATTTGT 60.055 43.478 5.23 0.00 33.34 2.83
2145 2288 3.311596 CCCTTCGTCCGGAAATATTTGTC 59.688 47.826 5.23 0.00 33.34 3.18
2146 2289 3.936453 CCTTCGTCCGGAAATATTTGTCA 59.064 43.478 5.23 0.00 33.34 3.58
2147 2290 4.574828 CCTTCGTCCGGAAATATTTGTCAT 59.425 41.667 5.23 0.00 33.34 3.06
2148 2291 5.277345 CCTTCGTCCGGAAATATTTGTCATC 60.277 44.000 5.23 0.00 33.34 2.92
2149 2292 4.760878 TCGTCCGGAAATATTTGTCATCA 58.239 39.130 5.23 0.00 0.00 3.07
2150 2293 5.179533 TCGTCCGGAAATATTTGTCATCAA 58.820 37.500 5.23 0.00 0.00 2.57
2151 2294 5.644206 TCGTCCGGAAATATTTGTCATCAAA 59.356 36.000 5.23 0.00 45.71 2.69
2152 2295 6.149640 TCGTCCGGAAATATTTGTCATCAAAA 59.850 34.615 5.23 0.00 44.97 2.44
2153 2296 6.972328 CGTCCGGAAATATTTGTCATCAAAAT 59.028 34.615 5.23 0.00 44.97 1.82
2154 2297 7.044117 CGTCCGGAAATATTTGTCATCAAAATG 60.044 37.037 5.23 0.00 44.97 2.32
2155 2298 7.222611 GTCCGGAAATATTTGTCATCAAAATGG 59.777 37.037 5.23 0.00 44.97 3.16
2156 2299 7.123397 TCCGGAAATATTTGTCATCAAAATGGA 59.877 33.333 0.00 0.00 44.97 3.41
2157 2300 7.927629 CCGGAAATATTTGTCATCAAAATGGAT 59.072 33.333 5.17 0.00 44.97 3.41
2158 2301 9.964303 CGGAAATATTTGTCATCAAAATGGATA 57.036 29.630 5.17 0.00 44.97 2.59
2165 2308 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
2166 2309 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
2167 2310 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
2168 2311 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
2169 2312 6.327104 TCATCAAAATGGATAAAAGGGGATGG 59.673 38.462 0.00 0.00 33.42 3.51
2170 2313 5.848004 TCAAAATGGATAAAAGGGGATGGA 58.152 37.500 0.00 0.00 0.00 3.41
2171 2314 5.660864 TCAAAATGGATAAAAGGGGATGGAC 59.339 40.000 0.00 0.00 0.00 4.02
2172 2315 3.903530 ATGGATAAAAGGGGATGGACC 57.096 47.619 0.00 0.00 38.08 4.46
2173 2316 2.871796 TGGATAAAAGGGGATGGACCT 58.128 47.619 0.00 0.00 40.96 3.85
2174 2317 4.029142 TGGATAAAAGGGGATGGACCTA 57.971 45.455 0.00 0.00 37.35 3.08
2175 2318 3.980698 TGGATAAAAGGGGATGGACCTAG 59.019 47.826 0.00 0.00 37.35 3.02
2176 2319 4.240323 GGATAAAAGGGGATGGACCTAGA 58.760 47.826 0.00 0.00 37.35 2.43
2177 2320 4.852697 GGATAAAAGGGGATGGACCTAGAT 59.147 45.833 0.00 0.00 37.35 1.98
2178 2321 5.280727 GGATAAAAGGGGATGGACCTAGATG 60.281 48.000 0.00 0.00 37.35 2.90
2179 2322 2.897823 AAGGGGATGGACCTAGATGT 57.102 50.000 0.00 0.00 37.35 3.06
2180 2323 4.295905 AAAGGGGATGGACCTAGATGTA 57.704 45.455 0.00 0.00 37.35 2.29
2181 2324 4.510303 AAGGGGATGGACCTAGATGTAT 57.490 45.455 0.00 0.00 37.35 2.29
2182 2325 4.510303 AGGGGATGGACCTAGATGTATT 57.490 45.455 0.00 0.00 36.32 1.89
2183 2326 4.844348 AGGGGATGGACCTAGATGTATTT 58.156 43.478 0.00 0.00 36.32 1.40
2184 2327 5.235534 AGGGGATGGACCTAGATGTATTTT 58.764 41.667 0.00 0.00 36.32 1.82
2185 2328 6.399013 AGGGGATGGACCTAGATGTATTTTA 58.601 40.000 0.00 0.00 36.32 1.52
2186 2329 6.502158 AGGGGATGGACCTAGATGTATTTTAG 59.498 42.308 0.00 0.00 36.32 1.85
2187 2330 6.174049 GGGATGGACCTAGATGTATTTTAGC 58.826 44.000 0.00 0.00 38.98 3.09
2188 2331 6.013293 GGGATGGACCTAGATGTATTTTAGCT 60.013 42.308 0.00 0.00 38.98 3.32
2189 2332 7.100409 GGATGGACCTAGATGTATTTTAGCTC 58.900 42.308 0.00 0.00 35.41 4.09
2190 2333 7.038658 GGATGGACCTAGATGTATTTTAGCTCT 60.039 40.741 0.00 0.00 35.41 4.09
2191 2334 8.958060 ATGGACCTAGATGTATTTTAGCTCTA 57.042 34.615 0.00 0.00 0.00 2.43
2192 2335 8.410673 TGGACCTAGATGTATTTTAGCTCTAG 57.589 38.462 0.00 0.00 36.66 2.43
2193 2336 8.225416 TGGACCTAGATGTATTTTAGCTCTAGA 58.775 37.037 0.00 0.00 38.33 2.43
2194 2337 9.250246 GGACCTAGATGTATTTTAGCTCTAGAT 57.750 37.037 0.00 0.00 38.33 1.98
2234 2377 9.443323 TCTATTTTGATGACAAGTATTTTCGGA 57.557 29.630 0.00 0.00 37.32 4.55
2235 2378 9.490663 CTATTTTGATGACAAGTATTTTCGGAC 57.509 33.333 0.00 0.00 37.32 4.79
2236 2379 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2237 2380 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2238 2381 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2239 2382 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2293 2440 0.853530 AAAGGACAGCAACCCTCCTT 59.146 50.000 0.00 0.00 44.80 3.36
2294 2441 0.111253 AAGGACAGCAACCCTCCTTG 59.889 55.000 0.00 0.00 41.91 3.61
2295 2442 0.768221 AGGACAGCAACCCTCCTTGA 60.768 55.000 0.00 0.00 29.41 3.02
2297 2444 1.478654 GGACAGCAACCCTCCTTGAAA 60.479 52.381 0.00 0.00 0.00 2.69
2298 2445 2.306847 GACAGCAACCCTCCTTGAAAA 58.693 47.619 0.00 0.00 0.00 2.29
2299 2446 2.693074 GACAGCAACCCTCCTTGAAAAA 59.307 45.455 0.00 0.00 0.00 1.94
2316 2463 2.979814 AAAACAAAGGACAGCAACCC 57.020 45.000 0.00 0.00 0.00 4.11
2317 2464 2.159179 AAACAAAGGACAGCAACCCT 57.841 45.000 0.00 0.00 0.00 4.34
2337 2484 1.079503 GTTGTCGATTGGGTGAGCTC 58.920 55.000 6.82 6.82 0.00 4.09
2444 2597 8.860088 AGTTGGAAAAAGTTATATTTCTGCAGT 58.140 29.630 14.67 0.00 36.15 4.40
2471 2624 6.377327 TTTCAACTCTCCACAGAAATTCAC 57.623 37.500 0.00 0.00 0.00 3.18
2472 2625 4.058124 TCAACTCTCCACAGAAATTCACG 58.942 43.478 0.00 0.00 0.00 4.35
2494 2647 2.093447 AGTCACAGTTATGCTAGTGCCC 60.093 50.000 0.00 0.00 38.71 5.36
2497 2650 1.227263 AGTTATGCTAGTGCCCGCG 60.227 57.895 0.00 0.00 38.71 6.46
2498 2651 2.587753 TTATGCTAGTGCCCGCGC 60.588 61.111 0.00 0.00 38.71 6.86
2499 2652 4.602259 TATGCTAGTGCCCGCGCC 62.602 66.667 0.00 0.00 38.71 6.53
2510 2663 4.236416 CCGCGCCCGTTAAGCATG 62.236 66.667 0.00 0.00 0.00 4.06
2511 2664 4.886925 CGCGCCCGTTAAGCATGC 62.887 66.667 10.51 10.51 0.00 4.06
2512 2665 4.552745 GCGCCCGTTAAGCATGCC 62.553 66.667 15.66 0.00 0.00 4.40
2513 2666 3.887868 CGCCCGTTAAGCATGCCC 61.888 66.667 15.66 0.00 0.00 5.36
2514 2667 2.753849 GCCCGTTAAGCATGCCCA 60.754 61.111 15.66 0.00 0.00 5.36
2515 2668 2.127232 GCCCGTTAAGCATGCCCAT 61.127 57.895 15.66 3.55 0.00 4.00
2516 2669 1.735360 CCCGTTAAGCATGCCCATG 59.265 57.895 15.66 3.79 41.60 3.66
2556 2709 6.459161 CCGTGACTATAGTACTTGCACACATA 60.459 42.308 17.16 0.00 0.00 2.29
2631 2793 7.548780 AGAGTAAAAGCATCTCTGAATGAAGAC 59.451 37.037 0.00 0.00 37.20 3.01
2633 2795 3.557228 AGCATCTCTGAATGAAGACCC 57.443 47.619 0.00 0.00 0.00 4.46
2637 2799 4.624843 GCATCTCTGAATGAAGACCCTGAA 60.625 45.833 4.67 0.00 0.00 3.02
2638 2800 4.543590 TCTCTGAATGAAGACCCTGAAC 57.456 45.455 0.00 0.00 0.00 3.18
2639 2801 4.163427 TCTCTGAATGAAGACCCTGAACT 58.837 43.478 0.00 0.00 0.00 3.01
2640 2802 4.594920 TCTCTGAATGAAGACCCTGAACTT 59.405 41.667 0.00 0.00 0.00 2.66
2641 2803 4.899502 TCTGAATGAAGACCCTGAACTTC 58.100 43.478 0.00 0.00 41.67 3.01
2642 2804 4.594920 TCTGAATGAAGACCCTGAACTTCT 59.405 41.667 0.00 0.00 41.79 2.85
2643 2805 4.645535 TGAATGAAGACCCTGAACTTCTG 58.354 43.478 0.00 0.00 41.79 3.02
2644 2806 4.347876 TGAATGAAGACCCTGAACTTCTGA 59.652 41.667 0.00 0.00 41.79 3.27
2645 2807 4.550076 ATGAAGACCCTGAACTTCTGAG 57.450 45.455 0.00 0.00 41.79 3.35
2646 2808 3.576861 TGAAGACCCTGAACTTCTGAGA 58.423 45.455 0.00 0.00 41.79 3.27
2647 2809 4.163427 TGAAGACCCTGAACTTCTGAGAT 58.837 43.478 0.00 0.00 41.79 2.75
2648 2810 4.221703 TGAAGACCCTGAACTTCTGAGATC 59.778 45.833 0.00 0.00 41.79 2.75
2649 2811 3.784178 AGACCCTGAACTTCTGAGATCA 58.216 45.455 0.00 0.00 34.09 2.92
2650 2812 4.360889 AGACCCTGAACTTCTGAGATCAT 58.639 43.478 0.00 0.00 34.64 2.45
2651 2813 4.161942 AGACCCTGAACTTCTGAGATCATG 59.838 45.833 0.00 0.00 34.64 3.07
2652 2814 4.099633 ACCCTGAACTTCTGAGATCATGA 58.900 43.478 0.00 0.00 34.64 3.07
2653 2815 4.081198 ACCCTGAACTTCTGAGATCATGAC 60.081 45.833 0.00 0.00 34.64 3.06
2654 2816 4.440880 CCTGAACTTCTGAGATCATGACC 58.559 47.826 0.00 0.00 34.64 4.02
2655 2817 4.081254 CCTGAACTTCTGAGATCATGACCA 60.081 45.833 0.00 0.00 34.64 4.02
2656 2818 4.825422 TGAACTTCTGAGATCATGACCAC 58.175 43.478 0.00 0.00 30.67 4.16
2657 2819 3.516981 ACTTCTGAGATCATGACCACG 57.483 47.619 0.00 0.00 0.00 4.94
2658 2820 2.828520 ACTTCTGAGATCATGACCACGT 59.171 45.455 0.00 0.00 0.00 4.49
2659 2821 3.259374 ACTTCTGAGATCATGACCACGTT 59.741 43.478 0.00 0.00 0.00 3.99
2660 2822 3.236632 TCTGAGATCATGACCACGTTG 57.763 47.619 0.00 0.00 0.00 4.10
2661 2823 1.662629 CTGAGATCATGACCACGTTGC 59.337 52.381 0.00 0.00 0.00 4.17
2662 2824 1.276138 TGAGATCATGACCACGTTGCT 59.724 47.619 0.00 0.00 0.00 3.91
2663 2825 2.289631 TGAGATCATGACCACGTTGCTT 60.290 45.455 0.00 0.00 0.00 3.91
2664 2826 2.744202 GAGATCATGACCACGTTGCTTT 59.256 45.455 0.00 0.00 0.00 3.51
2665 2827 2.485426 AGATCATGACCACGTTGCTTTG 59.515 45.455 0.00 0.00 0.00 2.77
2666 2828 0.310543 TCATGACCACGTTGCTTTGC 59.689 50.000 0.00 0.00 0.00 3.68
2667 2829 0.311790 CATGACCACGTTGCTTTGCT 59.688 50.000 0.00 0.00 0.00 3.91
2668 2830 1.535028 CATGACCACGTTGCTTTGCTA 59.465 47.619 0.00 0.00 0.00 3.49
2669 2831 1.890876 TGACCACGTTGCTTTGCTAT 58.109 45.000 0.00 0.00 0.00 2.97
2670 2832 2.226330 TGACCACGTTGCTTTGCTATT 58.774 42.857 0.00 0.00 0.00 1.73
2671 2833 3.403968 TGACCACGTTGCTTTGCTATTA 58.596 40.909 0.00 0.00 0.00 0.98
2672 2834 3.815962 TGACCACGTTGCTTTGCTATTAA 59.184 39.130 0.00 0.00 0.00 1.40
2673 2835 4.155310 ACCACGTTGCTTTGCTATTAAC 57.845 40.909 0.00 0.00 0.00 2.01
2674 2836 3.057806 ACCACGTTGCTTTGCTATTAACC 60.058 43.478 0.00 0.00 0.00 2.85
2675 2837 3.190535 CCACGTTGCTTTGCTATTAACCT 59.809 43.478 0.00 0.00 0.00 3.50
2676 2838 4.320935 CCACGTTGCTTTGCTATTAACCTT 60.321 41.667 0.00 0.00 0.00 3.50
2677 2839 4.616802 CACGTTGCTTTGCTATTAACCTTG 59.383 41.667 0.00 0.00 0.00 3.61
2678 2840 4.277423 ACGTTGCTTTGCTATTAACCTTGT 59.723 37.500 0.00 0.00 0.00 3.16
2679 2841 5.470777 ACGTTGCTTTGCTATTAACCTTGTA 59.529 36.000 0.00 0.00 0.00 2.41
2680 2842 6.016943 ACGTTGCTTTGCTATTAACCTTGTAA 60.017 34.615 0.00 0.00 0.00 2.41
2681 2843 6.523201 CGTTGCTTTGCTATTAACCTTGTAAG 59.477 38.462 0.00 0.00 0.00 2.34
2697 2859 4.271696 TGTAAGGTGTGACAAGATGAGG 57.728 45.455 0.00 0.00 0.00 3.86
2698 2860 3.646162 TGTAAGGTGTGACAAGATGAGGT 59.354 43.478 0.00 0.00 0.00 3.85
2699 2861 3.409026 AAGGTGTGACAAGATGAGGTC 57.591 47.619 0.00 0.00 34.63 3.85
2700 2862 1.273606 AGGTGTGACAAGATGAGGTCG 59.726 52.381 0.00 0.00 36.83 4.79
2701 2863 1.000955 GGTGTGACAAGATGAGGTCGT 59.999 52.381 0.00 0.00 36.83 4.34
2702 2864 2.329379 GTGTGACAAGATGAGGTCGTC 58.671 52.381 0.00 0.00 36.83 4.20
2703 2865 1.960689 TGTGACAAGATGAGGTCGTCA 59.039 47.619 0.00 0.00 40.38 4.35
2704 2866 2.029918 TGTGACAAGATGAGGTCGTCAG 60.030 50.000 1.25 0.00 39.07 3.51
2705 2867 1.546029 TGACAAGATGAGGTCGTCAGG 59.454 52.381 1.25 0.00 39.07 3.86
2706 2868 1.546476 GACAAGATGAGGTCGTCAGGT 59.454 52.381 1.25 0.00 39.07 4.00
2707 2869 2.753452 GACAAGATGAGGTCGTCAGGTA 59.247 50.000 1.25 0.00 39.07 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.196139 GAGTACTGCTATCCCTTGAGATATAAT 57.804 37.037 0.00 0.00 0.00 1.28
23 24 8.394822 AGAGTACTGCTATCCCTTGAGATATAA 58.605 37.037 0.00 0.00 0.00 0.98
24 25 7.934313 AGAGTACTGCTATCCCTTGAGATATA 58.066 38.462 0.00 0.00 0.00 0.86
25 26 6.799827 AGAGTACTGCTATCCCTTGAGATAT 58.200 40.000 0.00 0.00 0.00 1.63
26 27 6.183361 TGAGAGTACTGCTATCCCTTGAGATA 60.183 42.308 0.00 0.00 34.69 1.98
27 28 5.073437 AGAGTACTGCTATCCCTTGAGAT 57.927 43.478 0.00 0.00 0.00 2.75
28 29 4.079730 TGAGAGTACTGCTATCCCTTGAGA 60.080 45.833 0.00 0.00 34.69 3.27
29 30 4.211125 TGAGAGTACTGCTATCCCTTGAG 58.789 47.826 0.00 0.00 34.69 3.02
30 31 4.251103 TGAGAGTACTGCTATCCCTTGA 57.749 45.455 0.00 0.00 34.69 3.02
31 32 4.404073 ACTTGAGAGTACTGCTATCCCTTG 59.596 45.833 0.00 0.00 34.69 3.61
32 33 4.615513 ACTTGAGAGTACTGCTATCCCTT 58.384 43.478 0.00 0.00 34.69 3.95
33 34 4.079443 AGACTTGAGAGTACTGCTATCCCT 60.079 45.833 0.00 0.00 35.88 4.20
34 35 4.211920 AGACTTGAGAGTACTGCTATCCC 58.788 47.826 0.00 0.00 35.88 3.85
35 36 6.059484 AGTAGACTTGAGAGTACTGCTATCC 58.941 44.000 0.00 0.00 35.88 2.59
36 37 8.717821 CATAGTAGACTTGAGAGTACTGCTATC 58.282 40.741 0.00 0.00 37.15 2.08
37 38 7.663905 CCATAGTAGACTTGAGAGTACTGCTAT 59.336 40.741 0.00 0.00 38.23 2.97
38 39 6.993308 CCATAGTAGACTTGAGAGTACTGCTA 59.007 42.308 0.00 0.00 35.88 3.49
39 40 5.825679 CCATAGTAGACTTGAGAGTACTGCT 59.174 44.000 0.00 0.00 35.88 4.24
40 41 5.591067 ACCATAGTAGACTTGAGAGTACTGC 59.409 44.000 0.00 0.00 35.88 4.40
41 42 6.038825 CCACCATAGTAGACTTGAGAGTACTG 59.961 46.154 0.00 0.00 35.88 2.74
42 43 6.123651 CCACCATAGTAGACTTGAGAGTACT 58.876 44.000 0.00 0.00 35.88 2.73
43 44 5.887035 ACCACCATAGTAGACTTGAGAGTAC 59.113 44.000 0.00 0.00 35.88 2.73
44 45 6.075949 ACCACCATAGTAGACTTGAGAGTA 57.924 41.667 0.00 0.00 35.88 2.59
45 46 4.936802 ACCACCATAGTAGACTTGAGAGT 58.063 43.478 0.00 0.00 39.32 3.24
46 47 6.358178 TCTACCACCATAGTAGACTTGAGAG 58.642 44.000 0.00 0.00 40.93 3.20
47 48 6.323210 TCTACCACCATAGTAGACTTGAGA 57.677 41.667 0.00 0.00 40.93 3.27
48 49 6.547880 ACATCTACCACCATAGTAGACTTGAG 59.452 42.308 2.92 0.00 46.65 3.02
49 50 6.321435 CACATCTACCACCATAGTAGACTTGA 59.679 42.308 2.92 0.00 46.65 3.02
50 51 6.507900 CACATCTACCACCATAGTAGACTTG 58.492 44.000 2.92 2.28 46.65 3.16
51 52 5.069251 GCACATCTACCACCATAGTAGACTT 59.931 44.000 2.92 0.00 46.65 3.01
52 53 4.585162 GCACATCTACCACCATAGTAGACT 59.415 45.833 2.92 0.00 46.65 3.24
53 54 4.262079 GGCACATCTACCACCATAGTAGAC 60.262 50.000 2.92 0.00 46.65 2.59
55 56 3.898123 AGGCACATCTACCACCATAGTAG 59.102 47.826 0.00 0.00 38.86 2.57
56 57 3.895656 GAGGCACATCTACCACCATAGTA 59.104 47.826 0.00 0.00 0.00 1.82
57 58 2.700897 GAGGCACATCTACCACCATAGT 59.299 50.000 0.00 0.00 0.00 2.12
58 59 2.700371 TGAGGCACATCTACCACCATAG 59.300 50.000 0.00 0.00 0.00 2.23
59 60 2.758130 TGAGGCACATCTACCACCATA 58.242 47.619 0.00 0.00 0.00 2.74
60 61 1.583556 TGAGGCACATCTACCACCAT 58.416 50.000 0.00 0.00 0.00 3.55
61 62 1.210234 CATGAGGCACATCTACCACCA 59.790 52.381 0.00 0.00 37.07 4.17
79 80 6.389869 TCATGGAACTAGAGGAAATAACCCAT 59.610 38.462 0.00 0.00 0.00 4.00
178 180 6.231258 TCTCTCTAATGAGCACATCACAAT 57.769 37.500 0.00 0.00 41.91 2.71
188 190 7.665561 AAAAGTGACTTTCTCTCTAATGAGC 57.334 36.000 11.44 0.00 35.12 4.26
200 202 7.755373 GCTCCCATAATGTTAAAAGTGACTTTC 59.245 37.037 11.44 0.00 31.99 2.62
201 203 7.232534 TGCTCCCATAATGTTAAAAGTGACTTT 59.767 33.333 4.45 4.45 34.94 2.66
269 271 9.552695 AATTCATCAGATATACTCATACCCTCA 57.447 33.333 0.00 0.00 0.00 3.86
284 286 9.223099 GGGTTTTCATTTTCAAATTCATCAGAT 57.777 29.630 0.00 0.00 0.00 2.90
302 304 4.289410 TCTTGATCATGAGGAGGGTTTTCA 59.711 41.667 7.19 0.00 0.00 2.69
314 316 8.504812 TTACGAATGGAAATTCTTGATCATGA 57.495 30.769 7.19 7.19 0.00 3.07
335 337 6.538742 TGAGGGCAATTTCTTCTAATCTTACG 59.461 38.462 0.00 0.00 0.00 3.18
381 383 0.514255 CCGCGTCCAATCATGCATAG 59.486 55.000 4.92 0.00 0.00 2.23
382 384 0.105778 TCCGCGTCCAATCATGCATA 59.894 50.000 4.92 0.00 0.00 3.14
398 400 4.761975 TGTATACTTTACCAAAGCCTCCG 58.238 43.478 4.17 0.00 42.27 4.63
461 464 3.706600 ACTAGGACACCCGCAAAATAA 57.293 42.857 0.00 0.00 37.58 1.40
462 465 5.362105 AATACTAGGACACCCGCAAAATA 57.638 39.130 0.00 0.00 37.58 1.40
463 466 3.926058 ATACTAGGACACCCGCAAAAT 57.074 42.857 0.00 0.00 37.58 1.82
464 467 3.706600 AATACTAGGACACCCGCAAAA 57.293 42.857 0.00 0.00 37.58 2.44
465 468 3.770933 ACTAATACTAGGACACCCGCAAA 59.229 43.478 0.00 0.00 37.58 3.68
466 469 3.368248 ACTAATACTAGGACACCCGCAA 58.632 45.455 0.00 0.00 37.58 4.85
467 470 3.022557 ACTAATACTAGGACACCCGCA 57.977 47.619 0.00 0.00 37.58 5.69
468 471 3.635836 AGAACTAATACTAGGACACCCGC 59.364 47.826 0.00 0.00 37.58 6.13
469 472 6.949352 TTAGAACTAATACTAGGACACCCG 57.051 41.667 0.00 0.00 37.58 5.28
608 622 4.000988 TCCTAAATTCTCGTGTTCCTTGC 58.999 43.478 0.00 0.00 0.00 4.01
618 632 8.430801 AGAATCACTTCATTCCTAAATTCTCG 57.569 34.615 0.00 0.00 33.79 4.04
733 748 7.142995 AGGGTAGCATCTAAGCTCTTATTTT 57.857 36.000 0.00 0.00 45.26 1.82
843 883 2.398554 CCGTGTCGCCCAATCCAAG 61.399 63.158 0.00 0.00 0.00 3.61
888 928 6.968263 TCTTCATGAAGATATCGAAGTCCT 57.032 37.500 30.05 0.00 42.06 3.85
1011 1051 4.677779 GCATGTTCCAAGTTATCGCCAAAT 60.678 41.667 0.00 0.00 0.00 2.32
1030 1070 3.119531 ACAACATGTTGGGTATTCGCATG 60.120 43.478 35.20 12.72 44.45 4.06
1179 1242 2.820787 ACGTCAGACTTGGTAGAGAAGG 59.179 50.000 0.00 0.00 0.00 3.46
1216 1279 9.759473 ATACCAGTTACAACCTCTAGTACTAAA 57.241 33.333 3.76 0.00 0.00 1.85
1220 1283 9.401058 TCTTATACCAGTTACAACCTCTAGTAC 57.599 37.037 0.00 0.00 0.00 2.73
1246 1313 6.239289 CCATGGTTTGACTAATGGAGTTTGTT 60.239 38.462 2.57 0.00 41.84 2.83
1248 1315 5.336690 CCCATGGTTTGACTAATGGAGTTTG 60.337 44.000 11.73 0.00 41.84 2.93
1628 1758 4.993905 TCTGATTTGATTCATTGCAGCAG 58.006 39.130 0.00 0.00 0.00 4.24
1738 1875 7.890127 TCAAATGTATTGTTTCCTTCCAGAGAT 59.110 33.333 0.00 0.00 0.00 2.75
1739 1876 7.230747 TCAAATGTATTGTTTCCTTCCAGAGA 58.769 34.615 0.00 0.00 0.00 3.10
1744 1881 9.657419 AATTCATCAAATGTATTGTTTCCTTCC 57.343 29.630 0.00 0.00 30.49 3.46
1791 1929 1.001293 TCGCTGCCTATTGAGCCATAG 59.999 52.381 0.00 0.00 30.98 2.23
1792 1930 1.047801 TCGCTGCCTATTGAGCCATA 58.952 50.000 0.00 0.00 30.98 2.74
1793 1931 0.399454 ATCGCTGCCTATTGAGCCAT 59.601 50.000 0.00 0.00 30.98 4.40
1805 1944 4.477065 ATTTTGGAAAATGGCATCGCTGC 61.477 43.478 1.78 1.78 37.96 5.25
1806 1945 2.367030 TTTGGAAAATGGCATCGCTG 57.633 45.000 0.00 0.00 0.00 5.18
1827 1967 8.668653 ACACATGATACATCCCTATTTTCCATA 58.331 33.333 0.00 0.00 0.00 2.74
1829 1969 6.910191 ACACATGATACATCCCTATTTTCCA 58.090 36.000 0.00 0.00 0.00 3.53
1873 2016 8.741101 TCAATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1919 2062 7.201947 GGGGGTGTATCTAGACGTATTTTAGTT 60.202 40.741 0.00 0.00 0.00 2.24
1920 2063 6.266330 GGGGGTGTATCTAGACGTATTTTAGT 59.734 42.308 0.00 0.00 0.00 2.24
1921 2064 6.492772 AGGGGGTGTATCTAGACGTATTTTAG 59.507 42.308 0.00 0.00 0.00 1.85
1922 2065 6.376248 AGGGGGTGTATCTAGACGTATTTTA 58.624 40.000 0.00 0.00 0.00 1.52
1923 2066 5.214293 AGGGGGTGTATCTAGACGTATTTT 58.786 41.667 0.00 0.00 0.00 1.82
1925 2068 4.466255 AGGGGGTGTATCTAGACGTATT 57.534 45.455 0.00 0.00 0.00 1.89
1926 2069 4.466255 AAGGGGGTGTATCTAGACGTAT 57.534 45.455 0.00 0.00 0.00 3.06
1927 2070 3.959495 AAGGGGGTGTATCTAGACGTA 57.041 47.619 0.00 0.00 0.00 3.57
1929 2072 5.279356 GGATAAAAGGGGGTGTATCTAGACG 60.279 48.000 0.00 0.00 0.00 4.18
1930 2073 5.605488 TGGATAAAAGGGGGTGTATCTAGAC 59.395 44.000 0.00 0.00 0.00 2.59
1932 2075 6.704056 ATGGATAAAAGGGGGTGTATCTAG 57.296 41.667 0.00 0.00 0.00 2.43
1933 2076 7.474474 AAATGGATAAAAGGGGGTGTATCTA 57.526 36.000 0.00 0.00 0.00 1.98
1935 2078 6.609616 TCAAAATGGATAAAAGGGGGTGTATC 59.390 38.462 0.00 0.00 0.00 2.24
1936 2079 6.507568 TCAAAATGGATAAAAGGGGGTGTAT 58.492 36.000 0.00 0.00 0.00 2.29
1937 2080 5.905088 TCAAAATGGATAAAAGGGGGTGTA 58.095 37.500 0.00 0.00 0.00 2.90
1938 2081 4.757692 TCAAAATGGATAAAAGGGGGTGT 58.242 39.130 0.00 0.00 0.00 4.16
1939 2082 5.424895 TCATCAAAATGGATAAAAGGGGGTG 59.575 40.000 0.00 0.00 33.42 4.61
1940 2083 5.425217 GTCATCAAAATGGATAAAAGGGGGT 59.575 40.000 0.00 0.00 33.42 4.95
1941 2084 5.424895 TGTCATCAAAATGGATAAAAGGGGG 59.575 40.000 0.00 0.00 33.42 5.40
1942 2085 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
1943 2086 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
1949 2092 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
1950 2093 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
1951 2094 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
1952 2095 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
1953 2096 6.851609 TCCGGAAATACTTGTCATCAAAATG 58.148 36.000 0.00 0.00 32.87 2.32
1954 2097 7.416664 CCATCCGGAAATACTTGTCATCAAAAT 60.417 37.037 9.01 0.00 32.87 1.82
1955 2098 6.127758 CCATCCGGAAATACTTGTCATCAAAA 60.128 38.462 9.01 0.00 32.87 2.44
1956 2099 5.356751 CCATCCGGAAATACTTGTCATCAAA 59.643 40.000 9.01 0.00 32.87 2.69
1957 2100 4.881273 CCATCCGGAAATACTTGTCATCAA 59.119 41.667 9.01 0.00 0.00 2.57
1958 2101 4.163268 TCCATCCGGAAATACTTGTCATCA 59.837 41.667 9.01 0.00 38.83 3.07
1959 2102 4.703897 TCCATCCGGAAATACTTGTCATC 58.296 43.478 9.01 0.00 38.83 2.92
1960 2103 4.444876 CCTCCATCCGGAAATACTTGTCAT 60.445 45.833 9.01 0.00 42.21 3.06
1961 2104 3.118408 CCTCCATCCGGAAATACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
1962 2105 3.467803 CCTCCATCCGGAAATACTTGTC 58.532 50.000 9.01 0.00 42.21 3.18
1963 2106 2.172717 CCCTCCATCCGGAAATACTTGT 59.827 50.000 9.01 0.00 42.21 3.16
1964 2107 2.438021 TCCCTCCATCCGGAAATACTTG 59.562 50.000 9.01 0.00 42.21 3.16
1965 2108 2.706190 CTCCCTCCATCCGGAAATACTT 59.294 50.000 9.01 0.00 42.21 2.24
1966 2109 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
1967 2110 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
1968 2111 2.489528 ACTCCCTCCATCCGGAAATA 57.510 50.000 9.01 0.00 42.21 1.40
1969 2112 2.330216 CTACTCCCTCCATCCGGAAAT 58.670 52.381 9.01 0.00 42.21 2.17
1970 2113 1.007963 ACTACTCCCTCCATCCGGAAA 59.992 52.381 9.01 0.00 42.21 3.13
1971 2114 0.635009 ACTACTCCCTCCATCCGGAA 59.365 55.000 9.01 0.00 42.21 4.30
1972 2115 0.185416 GACTACTCCCTCCATCCGGA 59.815 60.000 6.61 6.61 39.79 5.14
1973 2116 0.106167 TGACTACTCCCTCCATCCGG 60.106 60.000 0.00 0.00 0.00 5.14
1974 2117 2.002505 ATGACTACTCCCTCCATCCG 57.997 55.000 0.00 0.00 0.00 4.18
1975 2118 4.484912 AGTAATGACTACTCCCTCCATCC 58.515 47.826 0.00 0.00 35.90 3.51
1976 2119 7.179269 AGATAGTAATGACTACTCCCTCCATC 58.821 42.308 0.00 0.00 41.01 3.51
1977 2120 7.109901 AGATAGTAATGACTACTCCCTCCAT 57.890 40.000 0.00 0.00 41.01 3.41
1978 2121 6.532119 AGATAGTAATGACTACTCCCTCCA 57.468 41.667 0.00 0.00 41.01 3.86
2028 2171 7.603180 ACTGAGACTATATGTCCTGCAAATA 57.397 36.000 0.00 0.00 46.46 1.40
2113 2256 1.513622 GACGAAGGGAGTCCTCTGC 59.486 63.158 9.58 2.34 44.07 4.26
2119 2262 0.535797 ATTTCCGGACGAAGGGAGTC 59.464 55.000 1.83 0.00 37.86 3.36
2120 2263 1.856629 TATTTCCGGACGAAGGGAGT 58.143 50.000 1.83 0.00 33.01 3.85
2121 2264 3.470645 AATATTTCCGGACGAAGGGAG 57.529 47.619 1.83 0.00 33.01 4.30
2122 2265 3.054948 ACAAATATTTCCGGACGAAGGGA 60.055 43.478 1.83 0.00 0.00 4.20
2123 2266 3.275999 ACAAATATTTCCGGACGAAGGG 58.724 45.455 1.83 0.00 0.00 3.95
2124 2267 3.936453 TGACAAATATTTCCGGACGAAGG 59.064 43.478 1.83 0.00 0.00 3.46
2125 2268 5.293324 TGATGACAAATATTTCCGGACGAAG 59.707 40.000 1.83 0.00 0.00 3.79
2126 2269 5.179533 TGATGACAAATATTTCCGGACGAA 58.820 37.500 1.83 0.00 0.00 3.85
2127 2270 4.760878 TGATGACAAATATTTCCGGACGA 58.239 39.130 1.83 0.00 0.00 4.20
2128 2271 5.478233 TTGATGACAAATATTTCCGGACG 57.522 39.130 1.83 0.00 32.73 4.79
2129 2272 7.222611 CCATTTTGATGACAAATATTTCCGGAC 59.777 37.037 1.83 0.00 43.99 4.79
2130 2273 7.123397 TCCATTTTGATGACAAATATTTCCGGA 59.877 33.333 0.00 0.00 43.99 5.14
2131 2274 7.264221 TCCATTTTGATGACAAATATTTCCGG 58.736 34.615 0.00 0.00 43.99 5.14
2132 2275 8.876275 ATCCATTTTGATGACAAATATTTCCG 57.124 30.769 0.00 0.00 43.99 4.30
2139 2282 8.048514 CCCCTTTTATCCATTTTGATGACAAAT 58.951 33.333 0.00 0.00 43.99 2.32
2140 2283 7.236432 TCCCCTTTTATCCATTTTGATGACAAA 59.764 33.333 0.00 0.00 43.10 2.83
2141 2284 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
2142 2285 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
2143 2286 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
2144 2287 6.327104 CCATCCCCTTTTATCCATTTTGATGA 59.673 38.462 0.00 0.00 0.00 2.92
2145 2288 6.327104 TCCATCCCCTTTTATCCATTTTGATG 59.673 38.462 0.00 0.00 0.00 3.07
2146 2289 6.327365 GTCCATCCCCTTTTATCCATTTTGAT 59.673 38.462 0.00 0.00 0.00 2.57
2147 2290 5.660864 GTCCATCCCCTTTTATCCATTTTGA 59.339 40.000 0.00 0.00 0.00 2.69
2148 2291 5.163311 GGTCCATCCCCTTTTATCCATTTTG 60.163 44.000 0.00 0.00 0.00 2.44
2149 2292 4.968719 GGTCCATCCCCTTTTATCCATTTT 59.031 41.667 0.00 0.00 0.00 1.82
2150 2293 4.235164 AGGTCCATCCCCTTTTATCCATTT 59.765 41.667 0.00 0.00 36.75 2.32
2151 2294 3.799578 AGGTCCATCCCCTTTTATCCATT 59.200 43.478 0.00 0.00 36.75 3.16
2152 2295 3.417010 AGGTCCATCCCCTTTTATCCAT 58.583 45.455 0.00 0.00 36.75 3.41
2153 2296 2.871796 AGGTCCATCCCCTTTTATCCA 58.128 47.619 0.00 0.00 36.75 3.41
2154 2297 4.240323 TCTAGGTCCATCCCCTTTTATCC 58.760 47.826 0.00 0.00 36.75 2.59
2155 2298 5.310857 ACATCTAGGTCCATCCCCTTTTATC 59.689 44.000 0.00 0.00 36.75 1.75
2156 2299 5.235534 ACATCTAGGTCCATCCCCTTTTAT 58.764 41.667 0.00 0.00 36.75 1.40
2157 2300 4.641868 ACATCTAGGTCCATCCCCTTTTA 58.358 43.478 0.00 0.00 36.75 1.52
2158 2301 3.474920 ACATCTAGGTCCATCCCCTTTT 58.525 45.455 0.00 0.00 36.75 2.27
2159 2302 3.151542 ACATCTAGGTCCATCCCCTTT 57.848 47.619 0.00 0.00 36.75 3.11
2160 2303 2.897823 ACATCTAGGTCCATCCCCTT 57.102 50.000 0.00 0.00 36.75 3.95
2161 2304 4.510303 AATACATCTAGGTCCATCCCCT 57.490 45.455 0.00 0.00 36.75 4.79
2162 2305 5.584551 AAAATACATCTAGGTCCATCCCC 57.415 43.478 0.00 0.00 36.75 4.81
2163 2306 6.013293 AGCTAAAATACATCTAGGTCCATCCC 60.013 42.308 0.00 0.00 36.75 3.85
2164 2307 7.010339 AGCTAAAATACATCTAGGTCCATCC 57.990 40.000 0.00 0.00 0.00 3.51
2165 2308 7.902087 AGAGCTAAAATACATCTAGGTCCATC 58.098 38.462 0.00 0.00 39.77 3.51
2166 2309 7.863901 AGAGCTAAAATACATCTAGGTCCAT 57.136 36.000 0.00 0.00 39.77 3.41
2167 2310 8.225416 TCTAGAGCTAAAATACATCTAGGTCCA 58.775 37.037 7.48 0.00 39.77 4.02
2168 2311 8.638629 TCTAGAGCTAAAATACATCTAGGTCC 57.361 38.462 7.48 0.00 39.77 4.46
2208 2351 9.443323 TCCGAAAATACTTGTCATCAAAATAGA 57.557 29.630 0.00 0.00 32.87 1.98
2209 2352 9.490663 GTCCGAAAATACTTGTCATCAAAATAG 57.509 33.333 0.00 0.00 32.87 1.73
2210 2353 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
2211 2354 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2212 2355 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2213 2356 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2214 2357 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2215 2358 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2216 2359 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2217 2360 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2218 2361 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2219 2362 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2220 2363 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2221 2364 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2222 2365 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2223 2366 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2224 2367 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2225 2368 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2226 2369 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2227 2370 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2228 2371 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
2229 2372 2.158564 ACATATACTCCCTCCGTCCGAA 60.159 50.000 0.00 0.00 0.00 4.30
2230 2373 1.422781 ACATATACTCCCTCCGTCCGA 59.577 52.381 0.00 0.00 0.00 4.55
2231 2374 1.906990 ACATATACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
2232 2375 5.075493 TCTTAACATATACTCCCTCCGTCC 58.925 45.833 0.00 0.00 0.00 4.79
2233 2376 6.837471 ATCTTAACATATACTCCCTCCGTC 57.163 41.667 0.00 0.00 0.00 4.79
2234 2377 9.406113 GTATATCTTAACATATACTCCCTCCGT 57.594 37.037 11.56 0.00 38.45 4.69
2235 2378 9.629878 AGTATATCTTAACATATACTCCCTCCG 57.370 37.037 14.35 0.00 44.26 4.63
2297 2444 2.168313 CAGGGTTGCTGTCCTTTGTTTT 59.832 45.455 0.00 0.00 0.00 2.43
2298 2445 1.756538 CAGGGTTGCTGTCCTTTGTTT 59.243 47.619 0.00 0.00 0.00 2.83
2299 2446 1.341976 ACAGGGTTGCTGTCCTTTGTT 60.342 47.619 0.00 0.00 0.00 2.83
2300 2447 0.258774 ACAGGGTTGCTGTCCTTTGT 59.741 50.000 0.00 0.00 0.00 2.83
2301 2448 1.067516 CAACAGGGTTGCTGTCCTTTG 59.932 52.381 0.00 0.00 33.41 2.77
2302 2449 1.341976 ACAACAGGGTTGCTGTCCTTT 60.342 47.619 8.89 0.00 27.55 3.11
2303 2450 0.258774 ACAACAGGGTTGCTGTCCTT 59.741 50.000 8.89 0.00 27.55 3.36
2304 2451 0.179018 GACAACAGGGTTGCTGTCCT 60.179 55.000 8.89 0.00 42.09 3.85
2305 2452 1.507141 CGACAACAGGGTTGCTGTCC 61.507 60.000 8.89 0.00 44.00 4.02
2306 2453 0.531974 TCGACAACAGGGTTGCTGTC 60.532 55.000 8.89 2.19 43.64 3.51
2307 2454 0.108585 ATCGACAACAGGGTTGCTGT 59.891 50.000 8.89 0.00 36.37 4.40
2308 2455 1.069022 CAATCGACAACAGGGTTGCTG 60.069 52.381 8.89 2.53 0.00 4.41
2309 2456 1.238439 CAATCGACAACAGGGTTGCT 58.762 50.000 8.89 0.00 0.00 3.91
2310 2457 0.240945 CCAATCGACAACAGGGTTGC 59.759 55.000 8.89 2.10 0.00 4.17
2311 2458 0.881118 CCCAATCGACAACAGGGTTG 59.119 55.000 7.51 7.51 34.75 3.77
2312 2459 3.339547 CCCAATCGACAACAGGGTT 57.660 52.632 0.00 0.00 34.75 4.11
2314 2461 0.036164 TCACCCAATCGACAACAGGG 59.964 55.000 7.65 7.65 45.20 4.45
2315 2462 1.442769 CTCACCCAATCGACAACAGG 58.557 55.000 0.00 0.00 0.00 4.00
2316 2463 0.798776 GCTCACCCAATCGACAACAG 59.201 55.000 0.00 0.00 0.00 3.16
2317 2464 0.396435 AGCTCACCCAATCGACAACA 59.604 50.000 0.00 0.00 0.00 3.33
2318 2465 1.079503 GAGCTCACCCAATCGACAAC 58.920 55.000 9.40 0.00 0.00 3.32
2319 2466 0.976641 AGAGCTCACCCAATCGACAA 59.023 50.000 17.77 0.00 0.00 3.18
2320 2467 0.532573 GAGAGCTCACCCAATCGACA 59.467 55.000 17.77 0.00 0.00 4.35
2321 2468 0.820871 AGAGAGCTCACCCAATCGAC 59.179 55.000 17.77 0.00 0.00 4.20
2322 2469 1.107114 GAGAGAGCTCACCCAATCGA 58.893 55.000 17.77 0.00 40.96 3.59
2323 2470 0.103937 GGAGAGAGCTCACCCAATCG 59.896 60.000 17.77 0.00 43.14 3.34
2324 2471 1.138661 CAGGAGAGAGCTCACCCAATC 59.861 57.143 17.77 3.16 43.14 2.67
2337 2484 2.941720 GGCAGAAATGTTAGCAGGAGAG 59.058 50.000 0.00 0.00 0.00 3.20
2379 2528 8.850452 CAAAAGTAGATGAAAAATTAAGACGGC 58.150 33.333 0.00 0.00 0.00 5.68
2380 2529 8.850452 GCAAAAGTAGATGAAAAATTAAGACGG 58.150 33.333 0.00 0.00 0.00 4.79
2381 2530 9.612620 AGCAAAAGTAGATGAAAAATTAAGACG 57.387 29.630 0.00 0.00 0.00 4.18
2444 2597 7.339212 TGAATTTCTGTGGAGAGTTGAAAAAGA 59.661 33.333 0.00 0.00 31.71 2.52
2471 2624 2.854777 GCACTAGCATAACTGTGACTCG 59.145 50.000 0.00 0.00 41.58 4.18
2472 2625 3.190874 GGCACTAGCATAACTGTGACTC 58.809 50.000 0.00 0.00 44.61 3.36
2494 2647 4.886925 GCATGCTTAACGGGCGCG 62.887 66.667 22.69 22.69 0.00 6.86
2497 2650 2.127232 ATGGGCATGCTTAACGGGC 61.127 57.895 18.92 0.00 0.00 6.13
2498 2651 1.735360 CATGGGCATGCTTAACGGG 59.265 57.895 18.92 0.00 31.39 5.28
2499 2652 1.735360 CCATGGGCATGCTTAACGG 59.265 57.895 18.92 8.39 37.49 4.44
2631 2793 4.440880 GTCATGATCTCAGAAGTTCAGGG 58.559 47.826 5.50 0.00 35.30 4.45
2633 2795 4.869297 GTGGTCATGATCTCAGAAGTTCAG 59.131 45.833 7.64 0.00 35.30 3.02
2637 2799 2.828520 ACGTGGTCATGATCTCAGAAGT 59.171 45.455 7.64 0.00 0.00 3.01
2638 2800 3.516981 ACGTGGTCATGATCTCAGAAG 57.483 47.619 7.64 0.00 0.00 2.85
2639 2801 3.588955 CAACGTGGTCATGATCTCAGAA 58.411 45.455 7.64 0.00 0.00 3.02
2640 2802 2.675032 GCAACGTGGTCATGATCTCAGA 60.675 50.000 7.64 0.00 0.00 3.27
2641 2803 1.662629 GCAACGTGGTCATGATCTCAG 59.337 52.381 7.64 3.32 0.00 3.35
2642 2804 1.276138 AGCAACGTGGTCATGATCTCA 59.724 47.619 7.64 0.00 0.00 3.27
2643 2805 2.015736 AGCAACGTGGTCATGATCTC 57.984 50.000 7.64 2.43 0.00 2.75
2644 2806 2.479566 AAGCAACGTGGTCATGATCT 57.520 45.000 7.64 0.00 0.00 2.75
2645 2807 2.855180 CAAAGCAACGTGGTCATGATC 58.145 47.619 0.00 0.00 0.00 2.92
2646 2808 1.068333 GCAAAGCAACGTGGTCATGAT 60.068 47.619 0.00 0.00 0.00 2.45
2647 2809 0.310543 GCAAAGCAACGTGGTCATGA 59.689 50.000 0.00 0.00 0.00 3.07
2648 2810 0.311790 AGCAAAGCAACGTGGTCATG 59.688 50.000 0.00 0.00 0.00 3.07
2649 2811 1.890876 TAGCAAAGCAACGTGGTCAT 58.109 45.000 0.00 0.00 0.00 3.06
2650 2812 1.890876 ATAGCAAAGCAACGTGGTCA 58.109 45.000 0.00 0.00 0.00 4.02
2651 2813 2.989422 AATAGCAAAGCAACGTGGTC 57.011 45.000 0.00 0.00 0.00 4.02
2652 2814 3.057806 GGTTAATAGCAAAGCAACGTGGT 60.058 43.478 0.00 0.00 0.00 4.16
2653 2815 3.190535 AGGTTAATAGCAAAGCAACGTGG 59.809 43.478 0.00 0.00 0.00 4.94
2654 2816 4.419522 AGGTTAATAGCAAAGCAACGTG 57.580 40.909 0.00 0.00 0.00 4.49
2655 2817 4.277423 ACAAGGTTAATAGCAAAGCAACGT 59.723 37.500 0.00 0.00 0.00 3.99
2656 2818 4.794169 ACAAGGTTAATAGCAAAGCAACG 58.206 39.130 0.00 0.00 0.00 4.10
2657 2819 6.806739 CCTTACAAGGTTAATAGCAAAGCAAC 59.193 38.462 0.00 0.00 41.41 4.17
2658 2820 6.919721 CCTTACAAGGTTAATAGCAAAGCAA 58.080 36.000 0.00 0.00 41.41 3.91
2659 2821 6.509418 CCTTACAAGGTTAATAGCAAAGCA 57.491 37.500 0.00 0.00 41.41 3.91
2675 2837 4.102524 ACCTCATCTTGTCACACCTTACAA 59.897 41.667 0.00 0.00 34.57 2.41
2676 2838 3.646162 ACCTCATCTTGTCACACCTTACA 59.354 43.478 0.00 0.00 0.00 2.41
2677 2839 4.246458 GACCTCATCTTGTCACACCTTAC 58.754 47.826 0.00 0.00 0.00 2.34
2678 2840 3.056821 CGACCTCATCTTGTCACACCTTA 60.057 47.826 0.00 0.00 0.00 2.69
2679 2841 2.289072 CGACCTCATCTTGTCACACCTT 60.289 50.000 0.00 0.00 0.00 3.50
2680 2842 1.273606 CGACCTCATCTTGTCACACCT 59.726 52.381 0.00 0.00 0.00 4.00
2681 2843 1.000955 ACGACCTCATCTTGTCACACC 59.999 52.381 0.00 0.00 0.00 4.16
2682 2844 2.288213 TGACGACCTCATCTTGTCACAC 60.288 50.000 0.00 0.00 34.85 3.82
2683 2845 1.960689 TGACGACCTCATCTTGTCACA 59.039 47.619 0.00 0.00 34.85 3.58
2684 2846 2.600731 CTGACGACCTCATCTTGTCAC 58.399 52.381 0.00 0.00 35.82 3.67
2685 2847 1.546029 CCTGACGACCTCATCTTGTCA 59.454 52.381 0.00 0.00 37.89 3.58
2686 2848 1.546476 ACCTGACGACCTCATCTTGTC 59.454 52.381 0.00 0.00 0.00 3.18
2687 2849 1.633774 ACCTGACGACCTCATCTTGT 58.366 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.