Multiple sequence alignment - TraesCS5B01G352600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G352600 chr5B 100.000 4670 0 0 1 4670 532258605 532253936 0.000000e+00 8624.0
1 TraesCS5B01G352600 chr5B 92.518 2673 150 23 918 3578 531856332 531853698 0.000000e+00 3783.0
2 TraesCS5B01G352600 chr5B 84.403 1776 226 30 1838 3585 532182964 532181212 0.000000e+00 1698.0
3 TraesCS5B01G352600 chr5B 84.327 587 76 8 994 1574 532183534 532182958 1.130000e-155 560.0
4 TraesCS5B01G352600 chr5B 91.005 378 29 2 216 589 531874763 531874387 5.390000e-139 505.0
5 TraesCS5B01G352600 chr5B 94.444 54 3 0 96 149 531875045 531874992 2.990000e-12 84.2
6 TraesCS5B01G352600 chr5B 82.500 80 10 4 474 550 559990154 559990232 3.020000e-07 67.6
7 TraesCS5B01G352600 chr5D 91.649 2766 162 33 920 3666 437876830 437874115 0.000000e+00 3764.0
8 TraesCS5B01G352600 chr5D 89.163 609 62 4 3712 4319 437874119 437873514 0.000000e+00 756.0
9 TraesCS5B01G352600 chr5D 96.620 355 12 0 4316 4670 437873486 437873132 1.450000e-164 590.0
10 TraesCS5B01G352600 chr5D 91.724 145 7 4 788 931 437876994 437876854 3.690000e-46 196.0
11 TraesCS5B01G352600 chr5D 90.476 63 6 0 609 671 337684622 337684684 2.990000e-12 84.2
12 TraesCS5B01G352600 chr5D 87.692 65 8 0 486 550 421990843 421990779 5.010000e-10 76.8
13 TraesCS5B01G352600 chr5D 86.275 51 5 1 4251 4299 409014425 409014375 2.000000e-03 54.7
14 TraesCS5B01G352600 chr6D 77.089 742 123 31 1056 1784 36563149 36563856 7.330000e-103 385.0
15 TraesCS5B01G352600 chr6D 76.026 780 149 28 2149 2906 36564209 36564972 2.050000e-98 370.0
16 TraesCS5B01G352600 chr6B 82.515 326 54 3 1060 1382 8109320 8109645 2.750000e-72 283.0
17 TraesCS5B01G352600 chr3D 87.500 152 19 0 1079 1230 614646087 614645936 4.800000e-40 176.0
18 TraesCS5B01G352600 chr3D 94.737 38 2 0 609 646 492229739 492229702 5.050000e-05 60.2
19 TraesCS5B01G352600 chr3A 81.006 179 23 9 1060 1230 750822263 750822438 1.050000e-26 132.0
20 TraesCS5B01G352600 chr3A 91.837 49 4 0 477 525 54359125 54359173 8.380000e-08 69.4
21 TraesCS5B01G352600 chr3A 84.507 71 5 5 4219 4286 9506324 9506257 1.080000e-06 65.8
22 TraesCS5B01G352600 chr7B 81.890 127 20 3 4152 4276 708532292 708532167 2.300000e-18 104.0
23 TraesCS5B01G352600 chr4D 90.909 66 5 1 609 673 483835805 483835740 2.310000e-13 87.9
24 TraesCS5B01G352600 chr2A 92.593 54 3 1 4617 4670 554517360 554517308 5.010000e-10 76.8
25 TraesCS5B01G352600 chr2A 95.556 45 2 0 609 653 39329242 39329286 6.480000e-09 73.1
26 TraesCS5B01G352600 chr1B 89.831 59 6 0 613 671 629499802 629499860 5.010000e-10 76.8
27 TraesCS5B01G352600 chr1B 90.741 54 4 1 467 520 664052217 664052269 2.330000e-08 71.3
28 TraesCS5B01G352600 chr7A 89.474 57 6 0 475 531 215184676 215184620 6.480000e-09 73.1
29 TraesCS5B01G352600 chr2D 83.562 73 12 0 478 550 35588313 35588385 8.380000e-08 69.4
30 TraesCS5B01G352600 chr2D 94.737 38 2 0 609 646 257173136 257173099 5.050000e-05 60.2
31 TraesCS5B01G352600 chr2B 89.091 55 6 0 477 531 585753401 585753455 8.380000e-08 69.4
32 TraesCS5B01G352600 chr2B 91.111 45 3 1 609 653 606865406 606865363 5.050000e-05 60.2
33 TraesCS5B01G352600 chr1D 86.154 65 6 3 477 539 445080553 445080490 3.020000e-07 67.6
34 TraesCS5B01G352600 chr6A 100.000 30 0 0 1043 1072 315601203 315601232 6.530000e-04 56.5
35 TraesCS5B01G352600 chr6A 100.000 28 0 0 4251 4278 322980784 322980757 8.000000e-03 52.8
36 TraesCS5B01G352600 chr1A 100.000 28 0 0 4251 4278 551871029 551871056 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G352600 chr5B 532253936 532258605 4669 True 8624.0 8624 100.0000 1 4670 1 chr5B.!!$R2 4669
1 TraesCS5B01G352600 chr5B 531853698 531856332 2634 True 3783.0 3783 92.5180 918 3578 1 chr5B.!!$R1 2660
2 TraesCS5B01G352600 chr5B 532181212 532183534 2322 True 1129.0 1698 84.3650 994 3585 2 chr5B.!!$R4 2591
3 TraesCS5B01G352600 chr5B 531874387 531875045 658 True 294.6 505 92.7245 96 589 2 chr5B.!!$R3 493
4 TraesCS5B01G352600 chr5D 437873132 437876994 3862 True 1326.5 3764 92.2890 788 4670 4 chr5D.!!$R3 3882
5 TraesCS5B01G352600 chr6D 36563149 36564972 1823 False 377.5 385 76.5575 1056 2906 2 chr6D.!!$F1 1850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 1142 0.035317 TGCCGACTCAGAGTTTGCAT 59.965 50.0 18.97 0.0 32.55 3.96 F
945 1148 0.167470 CTCAGAGTTTGCATGTGCGG 59.833 55.0 0.01 0.0 45.83 5.69 F
2115 2384 0.900421 TACTCTCTCGGTGACCTCGA 59.100 55.0 0.00 0.0 35.24 4.04 F
2924 3229 0.446222 CGGGTTAATCACGGTGCAAG 59.554 55.0 2.51 0.0 39.57 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2539 2820 0.178973 TGACCACCTCTTCGAGACCA 60.179 55.0 0.00 0.00 0.0 4.02 R
2566 2847 0.337082 TCGAGTCATACCCCTTCCCA 59.663 55.0 0.00 0.00 0.0 4.37 R
2962 3267 0.251341 CTTCCTCAACCCAACCCCAG 60.251 60.0 0.00 0.00 0.0 4.45 R
4251 4569 0.103937 CTTCAACAGGCGCCCAAAAA 59.896 50.0 26.15 10.73 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.437360 TTTGCCAGATATATATAATTGGAGCG 57.563 34.615 21.41 4.42 0.00 5.03
30 31 7.360113 TGCCAGATATATATAATTGGAGCGA 57.640 36.000 21.41 6.64 0.00 4.93
31 32 7.436933 TGCCAGATATATATAATTGGAGCGAG 58.563 38.462 21.41 3.68 0.00 5.03
32 33 7.287696 TGCCAGATATATATAATTGGAGCGAGA 59.712 37.037 21.41 3.81 0.00 4.04
33 34 8.144478 GCCAGATATATATAATTGGAGCGAGAA 58.856 37.037 21.41 0.00 0.00 2.87
49 50 9.391006 TGGAGCGAGAATAATAAATAAGTTTGT 57.609 29.630 0.00 0.00 0.00 2.83
50 51 9.651718 GGAGCGAGAATAATAAATAAGTTTGTG 57.348 33.333 0.00 0.00 0.00 3.33
51 52 9.159470 GAGCGAGAATAATAAATAAGTTTGTGC 57.841 33.333 0.00 0.00 0.00 4.57
52 53 8.673711 AGCGAGAATAATAAATAAGTTTGTGCA 58.326 29.630 0.00 0.00 0.00 4.57
53 54 9.450807 GCGAGAATAATAAATAAGTTTGTGCAT 57.549 29.630 0.00 0.00 0.00 3.96
62 63 9.882996 ATAAATAAGTTTGTGCATCATGTATCG 57.117 29.630 0.00 0.00 0.00 2.92
63 64 7.552458 AATAAGTTTGTGCATCATGTATCGA 57.448 32.000 0.00 0.00 0.00 3.59
64 65 5.878332 AAGTTTGTGCATCATGTATCGAA 57.122 34.783 0.00 0.00 0.00 3.71
65 66 5.221891 AGTTTGTGCATCATGTATCGAAC 57.778 39.130 0.00 0.00 0.00 3.95
66 67 4.937620 AGTTTGTGCATCATGTATCGAACT 59.062 37.500 0.00 0.00 0.00 3.01
67 68 5.063944 AGTTTGTGCATCATGTATCGAACTC 59.936 40.000 0.00 0.00 0.00 3.01
68 69 4.391405 TGTGCATCATGTATCGAACTCT 57.609 40.909 0.00 0.00 0.00 3.24
69 70 5.514274 TGTGCATCATGTATCGAACTCTA 57.486 39.130 0.00 0.00 0.00 2.43
70 71 5.523369 TGTGCATCATGTATCGAACTCTAG 58.477 41.667 0.00 0.00 0.00 2.43
71 72 5.299279 TGTGCATCATGTATCGAACTCTAGA 59.701 40.000 0.00 0.00 0.00 2.43
72 73 5.627367 GTGCATCATGTATCGAACTCTAGAC 59.373 44.000 0.00 0.00 0.00 2.59
73 74 5.532779 TGCATCATGTATCGAACTCTAGACT 59.467 40.000 0.00 0.00 0.00 3.24
74 75 6.039829 TGCATCATGTATCGAACTCTAGACTT 59.960 38.462 0.00 0.00 0.00 3.01
75 76 6.362016 GCATCATGTATCGAACTCTAGACTTG 59.638 42.308 0.00 0.00 0.00 3.16
76 77 7.643579 CATCATGTATCGAACTCTAGACTTGA 58.356 38.462 0.00 0.00 0.00 3.02
77 78 7.809546 TCATGTATCGAACTCTAGACTTGAT 57.190 36.000 0.00 0.00 0.00 2.57
78 79 7.866729 TCATGTATCGAACTCTAGACTTGATC 58.133 38.462 0.00 0.00 0.00 2.92
79 80 6.288426 TGTATCGAACTCTAGACTTGATCG 57.712 41.667 0.00 4.41 0.00 3.69
80 81 6.047231 TGTATCGAACTCTAGACTTGATCGA 58.953 40.000 12.89 12.89 41.36 3.59
81 82 6.537660 TGTATCGAACTCTAGACTTGATCGAA 59.462 38.462 14.02 4.83 40.62 3.71
82 83 5.874895 TCGAACTCTAGACTTGATCGAAA 57.125 39.130 9.44 0.00 35.22 3.46
83 84 5.870444 TCGAACTCTAGACTTGATCGAAAG 58.130 41.667 9.44 0.00 35.22 2.62
126 127 5.925969 CGCTACTGGAAACCATTTTGATTTT 59.074 36.000 0.00 0.00 30.82 1.82
129 130 9.435688 GCTACTGGAAACCATTTTGATTTTATT 57.564 29.630 0.00 0.00 30.82 1.40
183 184 9.672673 TTAAACCAACCAAATTTTTCTGAATGA 57.327 25.926 0.00 0.00 0.00 2.57
184 185 8.572855 AAACCAACCAAATTTTTCTGAATGAA 57.427 26.923 0.00 0.00 0.00 2.57
185 186 8.572855 AACCAACCAAATTTTTCTGAATGAAA 57.427 26.923 0.00 0.00 42.33 2.69
186 187 8.212317 ACCAACCAAATTTTTCTGAATGAAAG 57.788 30.769 0.00 0.00 44.40 2.62
187 188 7.282901 ACCAACCAAATTTTTCTGAATGAAAGG 59.717 33.333 0.00 0.00 44.40 3.11
188 189 6.866010 ACCAAATTTTTCTGAATGAAAGGC 57.134 33.333 0.00 0.00 44.40 4.35
189 190 6.355747 ACCAAATTTTTCTGAATGAAAGGCA 58.644 32.000 0.00 0.00 44.40 4.75
190 191 6.827762 ACCAAATTTTTCTGAATGAAAGGCAA 59.172 30.769 0.00 0.00 44.40 4.52
191 192 7.338957 ACCAAATTTTTCTGAATGAAAGGCAAA 59.661 29.630 0.00 0.00 44.40 3.68
192 193 8.189460 CCAAATTTTTCTGAATGAAAGGCAAAA 58.811 29.630 0.00 0.00 44.40 2.44
193 194 9.570488 CAAATTTTTCTGAATGAAAGGCAAAAA 57.430 25.926 0.00 0.00 44.40 1.94
207 208 3.284336 AAAAATTCGCGCCCCTCC 58.716 55.556 0.00 0.00 0.00 4.30
208 209 2.348104 AAAAATTCGCGCCCCTCCC 61.348 57.895 0.00 0.00 0.00 4.30
209 210 4.815108 AAATTCGCGCCCCTCCCC 62.815 66.667 0.00 0.00 0.00 4.81
226 389 2.042433 TCCCCCTCGGAATTGTTGAAAT 59.958 45.455 0.00 0.00 37.88 2.17
230 393 4.220602 CCCCTCGGAATTGTTGAAATTTCT 59.779 41.667 18.64 0.00 0.00 2.52
231 394 5.417580 CCCCTCGGAATTGTTGAAATTTCTA 59.582 40.000 18.64 8.95 0.00 2.10
278 441 2.225091 TGATGACCCTTCCAAAGCATGT 60.225 45.455 0.00 0.00 0.00 3.21
285 448 3.305608 CCCTTCCAAAGCATGTTCTTCAC 60.306 47.826 0.00 0.00 0.00 3.18
335 498 2.292521 TGTAGCCAGAGGAAGGAGACAT 60.293 50.000 0.00 0.00 0.00 3.06
389 552 3.344137 AACTACATGCAGGGCCCGG 62.344 63.158 18.94 18.94 0.00 5.73
397 560 2.762459 CAGGGCCCGGCTACAGTA 60.762 66.667 18.44 0.00 0.00 2.74
402 565 1.818363 GCCCGGCTACAGTAAAGGC 60.818 63.158 0.71 0.00 36.24 4.35
403 566 1.153229 CCCGGCTACAGTAAAGGCC 60.153 63.158 0.00 0.00 41.02 5.19
420 583 3.532542 AGGCCGCAACTATCTAAGTTTC 58.467 45.455 0.00 0.00 46.61 2.78
429 592 9.907576 CGCAACTATCTAAGTTTCTTAATTCAG 57.092 33.333 0.00 0.00 46.61 3.02
452 615 6.510879 GTTCCACTTATTTTGGGACTAAGG 57.489 41.667 0.00 0.00 39.34 2.69
455 618 5.045140 TCCACTTATTTTGGGACTAAGGGAG 60.045 44.000 0.00 0.00 34.56 4.30
475 642 6.071391 AGGGAGCCATTGTAACATTTTAAGTG 60.071 38.462 0.00 0.00 0.00 3.16
581 748 6.005583 AGCGCTTCCATTATACAATTCATG 57.994 37.500 2.64 0.00 0.00 3.07
590 757 8.298854 TCCATTATACAATTCATGCTTATGTGC 58.701 33.333 0.00 0.00 0.00 4.57
591 758 7.543172 CCATTATACAATTCATGCTTATGTGCC 59.457 37.037 0.00 0.00 0.00 5.01
592 759 7.822161 TTATACAATTCATGCTTATGTGCCT 57.178 32.000 0.00 0.00 0.00 4.75
593 760 6.720112 ATACAATTCATGCTTATGTGCCTT 57.280 33.333 0.00 0.00 0.00 4.35
594 761 7.822161 ATACAATTCATGCTTATGTGCCTTA 57.178 32.000 0.00 0.00 0.00 2.69
595 762 6.720112 ACAATTCATGCTTATGTGCCTTAT 57.280 33.333 0.00 0.00 0.00 1.73
596 763 6.742109 ACAATTCATGCTTATGTGCCTTATC 58.258 36.000 0.00 0.00 0.00 1.75
597 764 6.548622 ACAATTCATGCTTATGTGCCTTATCT 59.451 34.615 0.00 0.00 0.00 1.98
598 765 7.720957 ACAATTCATGCTTATGTGCCTTATCTA 59.279 33.333 0.00 0.00 0.00 1.98
599 766 8.570488 CAATTCATGCTTATGTGCCTTATCTAA 58.430 33.333 0.00 0.00 0.00 2.10
600 767 7.496529 TTCATGCTTATGTGCCTTATCTAAC 57.503 36.000 0.00 0.00 0.00 2.34
601 768 6.830912 TCATGCTTATGTGCCTTATCTAACT 58.169 36.000 0.00 0.00 0.00 2.24
602 769 6.931281 TCATGCTTATGTGCCTTATCTAACTC 59.069 38.462 0.00 0.00 0.00 3.01
603 770 5.289595 TGCTTATGTGCCTTATCTAACTCG 58.710 41.667 0.00 0.00 0.00 4.18
604 771 4.686554 GCTTATGTGCCTTATCTAACTCGG 59.313 45.833 0.00 0.00 0.00 4.63
605 772 5.509163 GCTTATGTGCCTTATCTAACTCGGA 60.509 44.000 0.00 0.00 0.00 4.55
606 773 4.592485 ATGTGCCTTATCTAACTCGGAG 57.408 45.455 2.83 2.83 0.00 4.63
607 774 2.100916 TGTGCCTTATCTAACTCGGAGC 59.899 50.000 4.58 0.00 0.00 4.70
608 775 2.362717 GTGCCTTATCTAACTCGGAGCT 59.637 50.000 4.58 0.00 0.00 4.09
609 776 3.031736 TGCCTTATCTAACTCGGAGCTT 58.968 45.455 4.58 1.81 0.00 3.74
610 777 3.451178 TGCCTTATCTAACTCGGAGCTTT 59.549 43.478 4.58 0.00 0.00 3.51
611 778 3.804873 GCCTTATCTAACTCGGAGCTTTG 59.195 47.826 4.58 0.93 0.00 2.77
612 779 4.441634 GCCTTATCTAACTCGGAGCTTTGA 60.442 45.833 4.58 6.03 0.00 2.69
613 780 5.740513 GCCTTATCTAACTCGGAGCTTTGAT 60.741 44.000 4.58 11.96 0.00 2.57
614 781 5.923684 CCTTATCTAACTCGGAGCTTTGATC 59.076 44.000 4.58 0.00 0.00 2.92
615 782 6.461648 CCTTATCTAACTCGGAGCTTTGATCA 60.462 42.308 4.58 0.00 0.00 2.92
616 783 4.801330 TCTAACTCGGAGCTTTGATCAA 57.199 40.909 3.38 3.38 0.00 2.57
617 784 5.147330 TCTAACTCGGAGCTTTGATCAAA 57.853 39.130 19.45 19.45 0.00 2.69
640 807 3.186345 GGTTTCCCCCTCCGATTTC 57.814 57.895 0.00 0.00 0.00 2.17
641 808 0.395311 GGTTTCCCCCTCCGATTTCC 60.395 60.000 0.00 0.00 0.00 3.13
642 809 0.330267 GTTTCCCCCTCCGATTTCCA 59.670 55.000 0.00 0.00 0.00 3.53
643 810 1.063942 GTTTCCCCCTCCGATTTCCAT 60.064 52.381 0.00 0.00 0.00 3.41
644 811 1.304891 TTCCCCCTCCGATTTCCATT 58.695 50.000 0.00 0.00 0.00 3.16
645 812 2.199927 TCCCCCTCCGATTTCCATTA 57.800 50.000 0.00 0.00 0.00 1.90
646 813 2.494158 TCCCCCTCCGATTTCCATTAA 58.506 47.619 0.00 0.00 0.00 1.40
647 814 2.441750 TCCCCCTCCGATTTCCATTAAG 59.558 50.000 0.00 0.00 0.00 1.85
648 815 2.489073 CCCCCTCCGATTTCCATTAAGG 60.489 54.545 0.00 0.00 39.47 2.69
649 816 2.489073 CCCCTCCGATTTCCATTAAGGG 60.489 54.545 0.00 0.00 41.41 3.95
650 817 2.441750 CCCTCCGATTTCCATTAAGGGA 59.558 50.000 4.35 4.35 43.93 4.20
651 818 3.117663 CCCTCCGATTTCCATTAAGGGAA 60.118 47.826 17.37 17.37 43.93 3.97
660 827 5.659440 TTCCATTAAGGGAAATGAACAGC 57.341 39.130 18.86 0.00 43.77 4.40
661 828 3.694072 TCCATTAAGGGAAATGAACAGCG 59.306 43.478 6.34 0.00 38.84 5.18
662 829 3.694072 CCATTAAGGGAAATGAACAGCGA 59.306 43.478 0.00 0.00 38.84 4.93
663 830 4.157656 CCATTAAGGGAAATGAACAGCGAA 59.842 41.667 0.00 0.00 38.84 4.70
664 831 4.759516 TTAAGGGAAATGAACAGCGAAC 57.240 40.909 0.00 0.00 0.00 3.95
665 832 2.568623 AGGGAAATGAACAGCGAACT 57.431 45.000 0.00 0.00 0.00 3.01
666 833 3.695830 AGGGAAATGAACAGCGAACTA 57.304 42.857 0.00 0.00 0.00 2.24
667 834 3.335579 AGGGAAATGAACAGCGAACTAC 58.664 45.455 0.00 0.00 0.00 2.73
668 835 3.071479 GGGAAATGAACAGCGAACTACA 58.929 45.455 0.00 0.00 0.00 2.74
669 836 3.500680 GGGAAATGAACAGCGAACTACAA 59.499 43.478 0.00 0.00 0.00 2.41
670 837 4.378459 GGGAAATGAACAGCGAACTACAAG 60.378 45.833 0.00 0.00 0.00 3.16
671 838 3.813529 AATGAACAGCGAACTACAAGC 57.186 42.857 0.00 0.00 0.00 4.01
672 839 2.232756 TGAACAGCGAACTACAAGCA 57.767 45.000 0.00 0.00 0.00 3.91
673 840 2.766313 TGAACAGCGAACTACAAGCAT 58.234 42.857 0.00 0.00 0.00 3.79
674 841 2.480037 TGAACAGCGAACTACAAGCATG 59.520 45.455 0.00 0.00 0.00 4.06
675 842 1.442769 ACAGCGAACTACAAGCATGG 58.557 50.000 0.00 0.00 0.00 3.66
676 843 0.729116 CAGCGAACTACAAGCATGGG 59.271 55.000 0.00 0.00 0.00 4.00
677 844 0.324943 AGCGAACTACAAGCATGGGT 59.675 50.000 0.00 0.00 0.00 4.51
678 845 1.553248 AGCGAACTACAAGCATGGGTA 59.447 47.619 0.00 0.00 0.00 3.69
679 846 2.170607 AGCGAACTACAAGCATGGGTAT 59.829 45.455 0.00 0.00 0.00 2.73
680 847 2.943033 GCGAACTACAAGCATGGGTATT 59.057 45.455 0.00 0.00 0.00 1.89
681 848 3.377172 GCGAACTACAAGCATGGGTATTT 59.623 43.478 0.00 0.00 0.00 1.40
682 849 4.142469 GCGAACTACAAGCATGGGTATTTT 60.142 41.667 0.00 0.00 0.00 1.82
683 850 5.621329 GCGAACTACAAGCATGGGTATTTTT 60.621 40.000 0.00 0.00 0.00 1.94
684 851 6.403855 GCGAACTACAAGCATGGGTATTTTTA 60.404 38.462 0.00 0.00 0.00 1.52
685 852 7.531716 CGAACTACAAGCATGGGTATTTTTAA 58.468 34.615 0.00 0.00 0.00 1.52
686 853 7.696453 CGAACTACAAGCATGGGTATTTTTAAG 59.304 37.037 0.00 0.00 0.00 1.85
687 854 8.644374 AACTACAAGCATGGGTATTTTTAAGA 57.356 30.769 0.00 0.00 0.00 2.10
688 855 8.051901 ACTACAAGCATGGGTATTTTTAAGAC 57.948 34.615 0.00 0.00 0.00 3.01
689 856 6.909550 ACAAGCATGGGTATTTTTAAGACA 57.090 33.333 0.00 0.00 0.00 3.41
690 857 6.924111 ACAAGCATGGGTATTTTTAAGACAG 58.076 36.000 0.00 0.00 0.00 3.51
691 858 6.719370 ACAAGCATGGGTATTTTTAAGACAGA 59.281 34.615 0.00 0.00 0.00 3.41
692 859 6.759497 AGCATGGGTATTTTTAAGACAGAC 57.241 37.500 0.00 0.00 0.00 3.51
693 860 5.652452 AGCATGGGTATTTTTAAGACAGACC 59.348 40.000 0.00 0.00 0.00 3.85
694 861 5.417580 GCATGGGTATTTTTAAGACAGACCA 59.582 40.000 0.00 0.00 0.00 4.02
695 862 6.096846 GCATGGGTATTTTTAAGACAGACCAT 59.903 38.462 0.00 0.00 35.52 3.55
696 863 7.682021 GCATGGGTATTTTTAAGACAGACCATC 60.682 40.741 0.00 0.00 33.06 3.51
697 864 6.785076 TGGGTATTTTTAAGACAGACCATCA 58.215 36.000 0.00 0.00 0.00 3.07
698 865 6.884295 TGGGTATTTTTAAGACAGACCATCAG 59.116 38.462 0.00 0.00 0.00 2.90
699 866 6.183360 GGGTATTTTTAAGACAGACCATCAGC 60.183 42.308 0.00 0.00 0.00 4.26
700 867 6.599638 GGTATTTTTAAGACAGACCATCAGCT 59.400 38.462 0.00 0.00 0.00 4.24
701 868 7.121315 GGTATTTTTAAGACAGACCATCAGCTT 59.879 37.037 0.00 0.00 0.00 3.74
702 869 6.959639 TTTTTAAGACAGACCATCAGCTTT 57.040 33.333 0.00 0.00 0.00 3.51
703 870 6.959639 TTTTAAGACAGACCATCAGCTTTT 57.040 33.333 0.00 0.00 0.00 2.27
704 871 6.959639 TTTAAGACAGACCATCAGCTTTTT 57.040 33.333 0.00 0.00 0.00 1.94
705 872 8.458573 TTTTAAGACAGACCATCAGCTTTTTA 57.541 30.769 0.00 0.00 0.00 1.52
706 873 8.635765 TTTAAGACAGACCATCAGCTTTTTAT 57.364 30.769 0.00 0.00 0.00 1.40
707 874 9.733556 TTTAAGACAGACCATCAGCTTTTTATA 57.266 29.630 0.00 0.00 0.00 0.98
708 875 9.905713 TTAAGACAGACCATCAGCTTTTTATAT 57.094 29.630 0.00 0.00 0.00 0.86
709 876 8.814038 AAGACAGACCATCAGCTTTTTATATT 57.186 30.769 0.00 0.00 0.00 1.28
710 877 8.814038 AGACAGACCATCAGCTTTTTATATTT 57.186 30.769 0.00 0.00 0.00 1.40
711 878 9.247861 AGACAGACCATCAGCTTTTTATATTTT 57.752 29.630 0.00 0.00 0.00 1.82
733 900 8.792830 TTTTATCTAGTCCATTCTGGTTTCAG 57.207 34.615 0.00 0.00 39.03 3.02
734 901 7.496346 TTATCTAGTCCATTCTGGTTTCAGT 57.504 36.000 0.00 0.00 41.59 3.41
735 902 5.825593 TCTAGTCCATTCTGGTTTCAGTT 57.174 39.130 0.00 0.00 41.59 3.16
736 903 6.928348 TCTAGTCCATTCTGGTTTCAGTTA 57.072 37.500 0.00 0.00 41.59 2.24
737 904 6.698380 TCTAGTCCATTCTGGTTTCAGTTAC 58.302 40.000 0.00 0.00 41.59 2.50
738 905 5.304686 AGTCCATTCTGGTTTCAGTTACA 57.695 39.130 0.00 0.00 41.59 2.41
739 906 5.690865 AGTCCATTCTGGTTTCAGTTACAA 58.309 37.500 0.00 0.00 41.59 2.41
740 907 5.531287 AGTCCATTCTGGTTTCAGTTACAAC 59.469 40.000 0.00 0.00 41.59 3.32
741 908 5.531287 GTCCATTCTGGTTTCAGTTACAACT 59.469 40.000 0.00 0.00 41.59 3.16
742 909 6.039382 GTCCATTCTGGTTTCAGTTACAACTT 59.961 38.462 0.00 0.00 41.59 2.66
743 910 7.227910 GTCCATTCTGGTTTCAGTTACAACTTA 59.772 37.037 0.00 0.00 41.59 2.24
744 911 7.227910 TCCATTCTGGTTTCAGTTACAACTTAC 59.772 37.037 0.00 0.00 41.59 2.34
745 912 7.012894 CCATTCTGGTTTCAGTTACAACTTACA 59.987 37.037 0.00 0.00 41.59 2.41
746 913 7.925043 TTCTGGTTTCAGTTACAACTTACAA 57.075 32.000 0.00 0.00 41.59 2.41
747 914 7.311364 TCTGGTTTCAGTTACAACTTACAAC 57.689 36.000 0.00 0.00 41.59 3.32
748 915 6.316890 TCTGGTTTCAGTTACAACTTACAACC 59.683 38.462 14.54 14.54 41.59 3.77
749 916 6.181908 TGGTTTCAGTTACAACTTACAACCT 58.818 36.000 18.70 0.00 38.92 3.50
750 917 6.316890 TGGTTTCAGTTACAACTTACAACCTC 59.683 38.462 18.70 4.34 38.92 3.85
751 918 6.316890 GGTTTCAGTTACAACTTACAACCTCA 59.683 38.462 14.31 0.00 37.10 3.86
752 919 7.148205 GGTTTCAGTTACAACTTACAACCTCAA 60.148 37.037 14.31 0.00 37.10 3.02
753 920 6.913873 TCAGTTACAACTTACAACCTCAAC 57.086 37.500 0.00 0.00 37.08 3.18
754 921 6.408035 TCAGTTACAACTTACAACCTCAACA 58.592 36.000 0.00 0.00 37.08 3.33
755 922 7.051623 TCAGTTACAACTTACAACCTCAACAT 58.948 34.615 0.00 0.00 37.08 2.71
756 923 7.225931 TCAGTTACAACTTACAACCTCAACATC 59.774 37.037 0.00 0.00 37.08 3.06
757 924 7.226720 CAGTTACAACTTACAACCTCAACATCT 59.773 37.037 0.00 0.00 37.08 2.90
758 925 7.441458 AGTTACAACTTACAACCTCAACATCTC 59.559 37.037 0.00 0.00 35.21 2.75
759 926 5.680619 ACAACTTACAACCTCAACATCTCA 58.319 37.500 0.00 0.00 0.00 3.27
760 927 5.527582 ACAACTTACAACCTCAACATCTCAC 59.472 40.000 0.00 0.00 0.00 3.51
761 928 5.290493 ACTTACAACCTCAACATCTCACA 57.710 39.130 0.00 0.00 0.00 3.58
762 929 5.680619 ACTTACAACCTCAACATCTCACAA 58.319 37.500 0.00 0.00 0.00 3.33
763 930 5.760253 ACTTACAACCTCAACATCTCACAAG 59.240 40.000 0.00 0.00 0.00 3.16
764 931 3.480470 ACAACCTCAACATCTCACAAGG 58.520 45.455 0.00 0.00 0.00 3.61
765 932 2.816087 CAACCTCAACATCTCACAAGGG 59.184 50.000 0.00 0.00 0.00 3.95
766 933 2.057922 ACCTCAACATCTCACAAGGGT 58.942 47.619 0.00 0.00 0.00 4.34
767 934 3.248024 ACCTCAACATCTCACAAGGGTA 58.752 45.455 0.00 0.00 0.00 3.69
768 935 3.261897 ACCTCAACATCTCACAAGGGTAG 59.738 47.826 0.00 0.00 0.00 3.18
769 936 3.369892 CCTCAACATCTCACAAGGGTAGG 60.370 52.174 0.00 0.00 0.00 3.18
770 937 2.571653 TCAACATCTCACAAGGGTAGGG 59.428 50.000 0.00 0.00 0.00 3.53
771 938 2.571653 CAACATCTCACAAGGGTAGGGA 59.428 50.000 0.00 0.00 0.00 4.20
772 939 2.188817 ACATCTCACAAGGGTAGGGAC 58.811 52.381 0.00 0.00 0.00 4.46
773 940 1.486726 CATCTCACAAGGGTAGGGACC 59.513 57.143 0.00 0.00 46.13 4.46
812 979 3.096852 GGGTAGGGCATGCTTAGTTTTT 58.903 45.455 18.92 0.00 0.00 1.94
843 1010 3.641906 TGAATCTAGTAGGGCAGGCTTAC 59.358 47.826 8.12 8.12 0.00 2.34
868 1036 4.759516 TTTTTCTTACCATTGCCGAGAC 57.240 40.909 0.00 0.00 0.00 3.36
900 1068 4.290622 CCAGCCCAACTGCCCAGT 62.291 66.667 0.00 0.00 45.78 4.00
936 1139 1.871080 AGTTGCCGACTCAGAGTTTG 58.129 50.000 4.05 0.56 31.20 2.93
937 1140 0.235926 GTTGCCGACTCAGAGTTTGC 59.764 55.000 15.14 15.14 0.00 3.68
938 1141 0.179059 TTGCCGACTCAGAGTTTGCA 60.179 50.000 18.97 18.97 34.62 4.08
939 1142 0.035317 TGCCGACTCAGAGTTTGCAT 59.965 50.000 18.97 0.00 32.55 3.96
941 1144 1.800805 CCGACTCAGAGTTTGCATGT 58.199 50.000 4.05 0.00 0.00 3.21
942 1145 1.462283 CCGACTCAGAGTTTGCATGTG 59.538 52.381 4.05 0.00 0.00 3.21
943 1146 1.136141 CGACTCAGAGTTTGCATGTGC 60.136 52.381 4.05 0.00 42.50 4.57
944 1147 0.870393 ACTCAGAGTTTGCATGTGCG 59.130 50.000 0.00 0.00 45.83 5.34
945 1148 0.167470 CTCAGAGTTTGCATGTGCGG 59.833 55.000 0.01 0.00 45.83 5.69
946 1149 1.443194 CAGAGTTTGCATGTGCGGC 60.443 57.895 0.01 0.00 45.83 6.53
978 1181 1.899142 TGCGCCTGTATATATCCAGCA 59.101 47.619 4.18 0.00 0.00 4.41
1679 1909 1.537889 TTCCCTTTCCTGGAGGCGA 60.538 57.895 0.00 0.00 32.37 5.54
1853 2097 1.227793 TGCCACATGTTGAGCACGA 60.228 52.632 10.18 0.00 0.00 4.35
2115 2384 0.900421 TACTCTCTCGGTGACCTCGA 59.100 55.000 0.00 0.00 35.24 4.04
2144 2413 2.106074 TATGGCTTGCCGCAGTTCG 61.106 57.895 7.18 0.00 41.67 3.95
2152 2421 2.954753 GCCGCAGTTCGACAACCTG 61.955 63.158 0.00 0.00 41.67 4.00
2167 2436 2.739996 CCTGGAGCGGCTGGAGATT 61.740 63.158 7.50 0.00 0.00 2.40
2290 2559 1.756950 CTGGCGGGAGTACCTAGCA 60.757 63.158 0.00 0.00 39.83 3.49
2337 2606 3.330192 TGCCATGGCGGACCTTAT 58.670 55.556 30.87 0.00 45.51 1.73
2395 2670 1.188219 AGGAAGAGGAGTGCTGCGAA 61.188 55.000 0.00 0.00 0.00 4.70
2566 2847 0.898789 AAGAGGTGGTCATCGACGGT 60.899 55.000 0.00 0.00 32.65 4.83
2586 2867 1.273381 TGGGAAGGGGTATGACTCGAA 60.273 52.381 0.00 0.00 0.00 3.71
2695 2976 3.136123 CGGTCCGAGTTCCCGCTA 61.136 66.667 4.91 0.00 34.62 4.26
2750 3034 2.263077 CACCATGCTCTGACGTAGAAC 58.737 52.381 0.00 0.00 34.32 3.01
2773 3060 6.532826 ACTTGACAATGGGTTGCAATTTTAT 58.467 32.000 0.59 0.00 38.96 1.40
2774 3061 6.427547 ACTTGACAATGGGTTGCAATTTTATG 59.572 34.615 0.59 2.68 38.96 1.90
2775 3062 6.106648 TGACAATGGGTTGCAATTTTATGA 57.893 33.333 0.59 0.00 38.96 2.15
2776 3063 5.931146 TGACAATGGGTTGCAATTTTATGAC 59.069 36.000 0.59 1.58 38.96 3.06
2777 3064 4.928615 ACAATGGGTTGCAATTTTATGACG 59.071 37.500 0.59 0.00 38.96 4.35
2778 3065 3.584406 TGGGTTGCAATTTTATGACGG 57.416 42.857 0.59 0.00 0.00 4.79
2779 3066 2.267426 GGGTTGCAATTTTATGACGGC 58.733 47.619 0.59 0.00 0.00 5.68
2780 3067 1.917303 GGTTGCAATTTTATGACGGCG 59.083 47.619 4.80 4.80 0.00 6.46
2781 3068 2.414824 GGTTGCAATTTTATGACGGCGA 60.415 45.455 16.62 0.00 0.00 5.54
2782 3069 2.823196 TGCAATTTTATGACGGCGAG 57.177 45.000 16.62 0.00 0.00 5.03
2803 3108 3.839490 AGGATGATGAGGATGAGGATGAC 59.161 47.826 0.00 0.00 0.00 3.06
2824 3129 2.623889 CGACGAGGATGATATATCCCCC 59.376 54.545 10.25 10.58 38.98 5.40
2826 3131 4.030913 GACGAGGATGATATATCCCCCAA 58.969 47.826 17.62 0.00 38.98 4.12
2890 3195 3.929610 GGCTAGAGTGCTTTAGTGTGAAG 59.070 47.826 0.00 0.00 0.00 3.02
2908 3213 3.064324 CTGAAGGCAAAGGGCGGG 61.064 66.667 0.00 0.00 46.16 6.13
2911 3216 1.303806 GAAGGCAAAGGGCGGGTTA 60.304 57.895 0.00 0.00 46.16 2.85
2922 3227 2.036006 GCGGGTTAATCACGGTGCA 61.036 57.895 2.51 0.00 43.98 4.57
2923 3228 1.579084 GCGGGTTAATCACGGTGCAA 61.579 55.000 2.51 0.00 43.98 4.08
2924 3229 0.446222 CGGGTTAATCACGGTGCAAG 59.554 55.000 2.51 0.00 39.57 4.01
2972 3277 1.378514 CGGAATGACTGGGGTTGGG 60.379 63.158 0.00 0.00 0.00 4.12
2976 3281 0.856982 AATGACTGGGGTTGGGTTGA 59.143 50.000 0.00 0.00 0.00 3.18
3024 3329 3.063084 GTCGGCGTCTCCACCTCT 61.063 66.667 6.85 0.00 34.01 3.69
3041 3346 2.435938 TGGTGCCGCCGATTTCTC 60.436 61.111 0.00 0.00 41.21 2.87
3149 3455 4.400251 CCCCTCCCCTCGACCAGT 62.400 72.222 0.00 0.00 0.00 4.00
3159 3465 0.905337 CTCGACCAGTCCCCTCCTTT 60.905 60.000 0.00 0.00 0.00 3.11
3172 3478 1.463214 TCCTTTGGCTCCTCCACCA 60.463 57.895 0.00 0.00 46.55 4.17
3186 3492 0.914644 CCACCATGTCCCAGTCAGAT 59.085 55.000 0.00 0.00 0.00 2.90
3222 3528 0.968901 TGTCCCGCCGACAGTATCTT 60.969 55.000 0.00 0.00 46.80 2.40
3227 3533 2.073816 CCGCCGACAGTATCTTTGTTT 58.926 47.619 0.00 0.00 0.00 2.83
3242 3548 0.249699 TGTTTGTCGTCAGTGGCGAT 60.250 50.000 24.32 0.00 40.59 4.58
3282 3588 4.794439 TGTCGCCGCGGACATGAG 62.794 66.667 33.48 12.00 41.76 2.90
3335 3641 4.415150 CGCTGGCTCCCACCATGT 62.415 66.667 0.00 0.00 39.54 3.21
3395 3701 1.008449 AGCCCCTCTAGCTAAGACCAA 59.992 52.381 0.00 0.00 39.29 3.67
3536 3849 2.412429 TGAATTTTTGCATGCACGCATC 59.588 40.909 22.58 15.25 42.62 3.91
3551 3868 4.731961 GCACGCATCTGATTTGTTGAATAG 59.268 41.667 0.00 0.00 0.00 1.73
3590 3907 7.999878 GCGCATGTATAATTTGTTGAATCATTG 59.000 33.333 0.30 0.00 0.00 2.82
3591 3908 7.999878 CGCATGTATAATTTGTTGAATCATTGC 59.000 33.333 0.00 0.00 0.00 3.56
3592 3909 9.037737 GCATGTATAATTTGTTGAATCATTGCT 57.962 29.630 0.00 0.00 0.00 3.91
3598 3915 5.886715 TTTGTTGAATCATTGCTTGAACG 57.113 34.783 0.00 0.00 38.03 3.95
3599 3916 4.566545 TGTTGAATCATTGCTTGAACGT 57.433 36.364 0.00 0.00 38.03 3.99
3605 3922 2.013400 TCATTGCTTGAACGTGTGTGT 58.987 42.857 0.00 0.00 0.00 3.72
3623 3940 5.927030 GTGTGTCACACCATGTAACTATTG 58.073 41.667 23.17 0.00 43.05 1.90
3627 3944 7.075741 GTGTCACACCATGTAACTATTGTTTC 58.924 38.462 0.00 0.00 37.59 2.78
3632 3949 8.230486 CACACCATGTAACTATTGTTTCTTCTC 58.770 37.037 0.00 0.00 37.59 2.87
3635 3952 8.598041 ACCATGTAACTATTGTTTCTTCTCTCT 58.402 33.333 0.00 0.00 37.59 3.10
3647 3964 7.911651 TGTTTCTTCTCTCTGGTCTGAATAAT 58.088 34.615 0.00 0.00 0.00 1.28
3648 3965 8.378565 TGTTTCTTCTCTCTGGTCTGAATAATT 58.621 33.333 0.00 0.00 0.00 1.40
3673 3990 8.618702 TGAATAAATTTTGCCATGATTGTGTT 57.381 26.923 0.00 0.00 0.00 3.32
3674 3991 9.064706 TGAATAAATTTTGCCATGATTGTGTTT 57.935 25.926 0.00 0.00 0.00 2.83
3675 3992 9.896263 GAATAAATTTTGCCATGATTGTGTTTT 57.104 25.926 0.00 0.00 0.00 2.43
3676 3993 9.680315 AATAAATTTTGCCATGATTGTGTTTTG 57.320 25.926 0.00 0.00 0.00 2.44
3677 3994 6.939132 AATTTTGCCATGATTGTGTTTTGA 57.061 29.167 0.00 0.00 0.00 2.69
3678 3995 5.987777 TTTTGCCATGATTGTGTTTTGAG 57.012 34.783 0.00 0.00 0.00 3.02
3679 3996 4.669206 TTGCCATGATTGTGTTTTGAGT 57.331 36.364 0.00 0.00 0.00 3.41
3680 3997 5.781210 TTGCCATGATTGTGTTTTGAGTA 57.219 34.783 0.00 0.00 0.00 2.59
3681 3998 5.119931 TGCCATGATTGTGTTTTGAGTAC 57.880 39.130 0.00 0.00 0.00 2.73
3682 3999 4.582240 TGCCATGATTGTGTTTTGAGTACA 59.418 37.500 0.00 0.00 0.00 2.90
3683 4000 5.243507 TGCCATGATTGTGTTTTGAGTACAT 59.756 36.000 0.00 0.00 0.00 2.29
3684 4001 5.801947 GCCATGATTGTGTTTTGAGTACATC 59.198 40.000 0.00 0.00 0.00 3.06
3685 4002 6.023435 CCATGATTGTGTTTTGAGTACATCG 58.977 40.000 0.00 0.00 0.00 3.84
3686 4003 6.128309 CCATGATTGTGTTTTGAGTACATCGA 60.128 38.462 0.00 0.00 0.00 3.59
3687 4004 7.414429 CCATGATTGTGTTTTGAGTACATCGAT 60.414 37.037 0.00 0.00 0.00 3.59
3688 4005 7.060600 TGATTGTGTTTTGAGTACATCGATC 57.939 36.000 0.00 0.00 0.00 3.69
3689 4006 6.648725 TGATTGTGTTTTGAGTACATCGATCA 59.351 34.615 0.00 0.00 31.97 2.92
3690 4007 7.334171 TGATTGTGTTTTGAGTACATCGATCAT 59.666 33.333 0.00 0.00 30.86 2.45
3691 4008 6.647212 TGTGTTTTGAGTACATCGATCATC 57.353 37.500 0.00 0.00 0.00 2.92
3692 4009 6.162777 TGTGTTTTGAGTACATCGATCATCA 58.837 36.000 0.00 0.00 0.00 3.07
3693 4010 6.648725 TGTGTTTTGAGTACATCGATCATCAA 59.351 34.615 0.00 1.03 0.00 2.57
3694 4011 6.955963 GTGTTTTGAGTACATCGATCATCAAC 59.044 38.462 0.00 0.00 0.00 3.18
3695 4012 6.873605 TGTTTTGAGTACATCGATCATCAACT 59.126 34.615 0.00 0.00 0.00 3.16
3696 4013 7.387673 TGTTTTGAGTACATCGATCATCAACTT 59.612 33.333 0.00 0.00 0.00 2.66
3697 4014 6.892310 TTGAGTACATCGATCATCAACTTG 57.108 37.500 0.00 0.00 0.00 3.16
3698 4015 5.965922 TGAGTACATCGATCATCAACTTGT 58.034 37.500 0.00 0.00 0.00 3.16
3699 4016 5.807011 TGAGTACATCGATCATCAACTTGTG 59.193 40.000 0.00 0.00 0.00 3.33
3700 4017 5.965922 AGTACATCGATCATCAACTTGTGA 58.034 37.500 0.00 0.00 41.67 3.58
3701 4018 6.038985 AGTACATCGATCATCAACTTGTGAG 58.961 40.000 0.00 0.00 40.43 3.51
3702 4019 4.825422 ACATCGATCATCAACTTGTGAGT 58.175 39.130 0.00 0.00 40.43 3.41
3703 4020 4.628766 ACATCGATCATCAACTTGTGAGTG 59.371 41.667 0.00 0.00 40.43 3.51
3704 4021 4.519540 TCGATCATCAACTTGTGAGTGA 57.480 40.909 0.00 0.00 40.43 3.41
3705 4022 4.881920 TCGATCATCAACTTGTGAGTGAA 58.118 39.130 0.00 0.00 40.43 3.18
3706 4023 4.925646 TCGATCATCAACTTGTGAGTGAAG 59.074 41.667 0.00 0.00 40.43 3.02
3707 4024 4.435253 CGATCATCAACTTGTGAGTGAAGC 60.435 45.833 0.00 0.00 40.43 3.86
3708 4025 3.807553 TCATCAACTTGTGAGTGAAGCA 58.192 40.909 0.00 0.00 40.43 3.91
3709 4026 3.561310 TCATCAACTTGTGAGTGAAGCAC 59.439 43.478 0.00 0.00 40.43 4.40
3710 4027 2.984562 TCAACTTGTGAGTGAAGCACA 58.015 42.857 0.00 0.00 43.89 4.57
3711 4028 2.677836 TCAACTTGTGAGTGAAGCACAC 59.322 45.455 0.00 6.03 45.10 3.82
3735 4052 2.250188 GCATGTATCGGTTTGTTGTGC 58.750 47.619 0.00 0.00 0.00 4.57
3738 4055 4.545610 CATGTATCGGTTTGTTGTGCTTT 58.454 39.130 0.00 0.00 0.00 3.51
3747 4064 4.143137 GGTTTGTTGTGCTTTTGTTGAGTG 60.143 41.667 0.00 0.00 0.00 3.51
3758 4075 5.174398 GCTTTTGTTGAGTGTGATTGATGTG 59.826 40.000 0.00 0.00 0.00 3.21
3769 4086 2.363680 TGATTGATGTGTGCCGGTTTTT 59.636 40.909 1.90 0.00 0.00 1.94
3810 4127 4.996122 TGCAATTAACTGGGCAAATCTTTG 59.004 37.500 0.00 0.00 41.03 2.77
3814 4131 5.705609 TTAACTGGGCAAATCTTTGTCTC 57.294 39.130 7.16 0.00 42.20 3.36
3823 4140 6.976925 GGGCAAATCTTTGTCTCAATCAATAG 59.023 38.462 7.16 0.00 42.20 1.73
3836 4153 9.070149 GTCTCAATCAATAGAACAAAGCAAATC 57.930 33.333 0.00 0.00 0.00 2.17
3838 4155 8.975410 TCAATCAATAGAACAAAGCAAATCTG 57.025 30.769 0.00 0.00 0.00 2.90
3846 4163 2.287788 ACAAAGCAAATCTGTTGCCTCG 60.288 45.455 7.41 0.00 45.98 4.63
3870 4187 8.356657 TCGGTTTCAAAATAAGAACATGTGATT 58.643 29.630 0.00 0.00 0.00 2.57
3871 4188 8.427012 CGGTTTCAAAATAAGAACATGTGATTG 58.573 33.333 0.00 0.00 0.00 2.67
3878 4195 9.778993 AAAATAAGAACATGTGATTGATCGAAG 57.221 29.630 0.00 0.00 0.00 3.79
3880 4197 8.722480 ATAAGAACATGTGATTGATCGAAGAA 57.278 30.769 0.00 0.00 43.58 2.52
3885 4202 5.583854 ACATGTGATTGATCGAAGAAGGAAG 59.416 40.000 0.00 0.00 43.58 3.46
3886 4203 3.935203 TGTGATTGATCGAAGAAGGAAGC 59.065 43.478 0.00 0.00 43.58 3.86
3899 4216 2.376808 AGGAAGCTCATCACTTGTCG 57.623 50.000 0.00 0.00 0.00 4.35
3964 4281 2.100991 GCATCTCCAAAAGGCGCG 59.899 61.111 0.00 0.00 0.00 6.86
3969 4286 3.651480 CTCCAAAAGGCGCGCTTCG 62.651 63.158 32.29 15.28 42.12 3.79
3970 4287 4.025401 CCAAAAGGCGCGCTTCGT 62.025 61.111 32.29 12.63 41.07 3.85
3983 4300 1.298190 CTTCGTCTAGGCGCGGTAC 60.298 63.158 12.97 0.00 0.00 3.34
3998 4316 3.124636 CGCGGTACAATTCTTTTACAGCT 59.875 43.478 0.00 0.00 35.53 4.24
3999 4317 4.648970 GCGGTACAATTCTTTTACAGCTC 58.351 43.478 0.00 0.00 35.03 4.09
4015 4333 9.528018 TTTTACAGCTCCAAAATAGTCTTTTTG 57.472 29.630 10.70 10.70 43.19 2.44
4016 4334 6.715347 ACAGCTCCAAAATAGTCTTTTTGT 57.285 33.333 14.03 0.00 42.41 2.83
4041 4359 3.694566 GCGGGAGTGATGAATAGGTTTTT 59.305 43.478 0.00 0.00 0.00 1.94
4044 4362 5.065218 CGGGAGTGATGAATAGGTTTTTCAG 59.935 44.000 0.00 0.00 36.60 3.02
4058 4376 6.114767 AGGTTTTTCAGATGCACAAAAACAT 58.885 32.000 24.61 19.86 45.58 2.71
4070 4388 3.059166 ACAAAAACATGGCGCTCAATTC 58.941 40.909 7.64 0.00 0.00 2.17
4073 4391 0.960364 AACATGGCGCTCAATTCGGT 60.960 50.000 7.64 0.00 0.00 4.69
4079 4397 2.361104 GCTCAATTCGGTGGCCCA 60.361 61.111 0.00 0.00 0.00 5.36
4082 4400 0.609131 CTCAATTCGGTGGCCCAACT 60.609 55.000 0.00 0.00 0.00 3.16
4129 4447 1.072852 GCCCAAATTTGCAGCCCAA 59.927 52.632 12.92 0.00 0.00 4.12
4132 4450 1.515081 CCAAATTTGCAGCCCAACAG 58.485 50.000 12.92 0.00 31.97 3.16
4135 4453 2.115734 AATTTGCAGCCCAACAGCCC 62.116 55.000 0.00 0.00 31.97 5.19
4136 4454 4.536526 TTGCAGCCCAACAGCCCA 62.537 61.111 0.00 0.00 0.00 5.36
4231 4549 4.720649 TTTCAACACCCAAAAACGATGA 57.279 36.364 0.00 0.00 0.00 2.92
4251 4569 5.565592 TGATTTTTAGCGCATGAGACATT 57.434 34.783 11.47 0.00 0.00 2.71
4268 4586 3.941081 TTTTTGGGCGCCTGTTGA 58.059 50.000 28.56 7.36 0.00 3.18
4278 4596 0.725686 CGCCTGTTGAAGATGCTCTG 59.274 55.000 0.00 0.00 0.00 3.35
4298 4616 2.028839 TGAGCGAACCGAAACCTGATAA 60.029 45.455 0.00 0.00 0.00 1.75
4300 4618 2.740447 AGCGAACCGAAACCTGATAAAC 59.260 45.455 0.00 0.00 0.00 2.01
4308 4626 0.988832 AACCTGATAAACAGCGGGGA 59.011 50.000 0.00 0.00 44.52 4.81
4309 4627 0.541863 ACCTGATAAACAGCGGGGAG 59.458 55.000 0.00 0.00 44.52 4.30
4310 4628 0.179045 CCTGATAAACAGCGGGGAGG 60.179 60.000 0.00 0.00 44.52 4.30
4311 4629 0.830648 CTGATAAACAGCGGGGAGGA 59.169 55.000 0.00 0.00 39.86 3.71
4312 4630 0.539986 TGATAAACAGCGGGGAGGAC 59.460 55.000 0.00 0.00 0.00 3.85
4313 4631 0.179054 GATAAACAGCGGGGAGGACC 60.179 60.000 0.00 0.00 39.11 4.46
4314 4632 0.912487 ATAAACAGCGGGGAGGACCA 60.912 55.000 0.00 0.00 42.91 4.02
4408 4755 1.998315 CTGTTCCACTCTCATCAAGCG 59.002 52.381 0.00 0.00 0.00 4.68
4428 4775 2.045926 ATGGCAGGTGAACCGCTC 60.046 61.111 13.39 6.90 42.08 5.03
4453 4800 3.055819 GGCAACAGAGTGGTATTCTCTCA 60.056 47.826 0.00 0.00 39.84 3.27
4480 4827 4.617253 TTGAGTTTGCTTGCCTACTAGA 57.383 40.909 0.00 0.00 0.00 2.43
4484 4831 5.221641 TGAGTTTGCTTGCCTACTAGAGAAA 60.222 40.000 0.00 0.00 0.00 2.52
4514 4861 1.859302 TGCCTTGGAGGTGTGTTTTT 58.141 45.000 0.00 0.00 37.80 1.94
4529 4876 0.465460 TTTTTGCACTCCGGCTCAGT 60.465 50.000 0.00 0.00 34.04 3.41
4532 4879 1.468506 TTGCACTCCGGCTCAGTGTA 61.469 55.000 19.63 14.31 42.89 2.90
4608 4955 6.585695 TCTCCTCACGTTAAAACTCTGTAT 57.414 37.500 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.892723 CGCTCCAATTATATATATCTGGCAAAA 58.107 33.333 12.71 0.00 0.00 2.44
4 5 8.264347 TCGCTCCAATTATATATATCTGGCAAA 58.736 33.333 12.71 0.00 0.00 3.68
5 6 7.791029 TCGCTCCAATTATATATATCTGGCAA 58.209 34.615 12.71 0.00 0.00 4.52
6 7 7.287696 TCTCGCTCCAATTATATATATCTGGCA 59.712 37.037 12.71 0.00 0.00 4.92
7 8 7.661968 TCTCGCTCCAATTATATATATCTGGC 58.338 38.462 12.71 5.09 0.00 4.85
23 24 9.391006 ACAAACTTATTTATTATTCTCGCTCCA 57.609 29.630 0.00 0.00 0.00 3.86
24 25 9.651718 CACAAACTTATTTATTATTCTCGCTCC 57.348 33.333 0.00 0.00 0.00 4.70
25 26 9.159470 GCACAAACTTATTTATTATTCTCGCTC 57.841 33.333 0.00 0.00 0.00 5.03
26 27 8.673711 TGCACAAACTTATTTATTATTCTCGCT 58.326 29.630 0.00 0.00 0.00 4.93
27 28 8.835467 TGCACAAACTTATTTATTATTCTCGC 57.165 30.769 0.00 0.00 0.00 5.03
36 37 9.882996 CGATACATGATGCACAAACTTATTTAT 57.117 29.630 0.00 0.00 0.00 1.40
37 38 9.103861 TCGATACATGATGCACAAACTTATTTA 57.896 29.630 0.00 0.00 0.00 1.40
38 39 7.984391 TCGATACATGATGCACAAACTTATTT 58.016 30.769 0.00 0.00 0.00 1.40
39 40 7.552458 TCGATACATGATGCACAAACTTATT 57.448 32.000 0.00 0.00 0.00 1.40
40 41 7.280876 AGTTCGATACATGATGCACAAACTTAT 59.719 33.333 0.00 0.00 0.00 1.73
41 42 6.593770 AGTTCGATACATGATGCACAAACTTA 59.406 34.615 0.00 0.00 0.00 2.24
42 43 5.412594 AGTTCGATACATGATGCACAAACTT 59.587 36.000 0.00 0.00 0.00 2.66
43 44 4.937620 AGTTCGATACATGATGCACAAACT 59.062 37.500 0.00 0.00 0.00 2.66
44 45 5.063944 AGAGTTCGATACATGATGCACAAAC 59.936 40.000 0.00 0.00 0.00 2.93
45 46 5.178061 AGAGTTCGATACATGATGCACAAA 58.822 37.500 0.00 0.00 0.00 2.83
46 47 4.758688 AGAGTTCGATACATGATGCACAA 58.241 39.130 0.00 0.00 0.00 3.33
47 48 4.391405 AGAGTTCGATACATGATGCACA 57.609 40.909 0.00 0.00 0.00 4.57
48 49 5.627367 GTCTAGAGTTCGATACATGATGCAC 59.373 44.000 0.00 0.00 0.00 4.57
49 50 5.532779 AGTCTAGAGTTCGATACATGATGCA 59.467 40.000 0.00 0.00 0.00 3.96
50 51 6.007936 AGTCTAGAGTTCGATACATGATGC 57.992 41.667 0.00 0.00 0.00 3.91
51 52 7.643579 TCAAGTCTAGAGTTCGATACATGATG 58.356 38.462 9.98 0.00 0.00 3.07
52 53 7.809546 TCAAGTCTAGAGTTCGATACATGAT 57.190 36.000 9.98 0.00 0.00 2.45
53 54 7.307455 CGATCAAGTCTAGAGTTCGATACATGA 60.307 40.741 9.98 3.57 0.00 3.07
54 55 6.794636 CGATCAAGTCTAGAGTTCGATACATG 59.205 42.308 9.98 0.00 0.00 3.21
55 56 6.706716 TCGATCAAGTCTAGAGTTCGATACAT 59.293 38.462 15.58 2.61 0.00 2.29
56 57 6.047231 TCGATCAAGTCTAGAGTTCGATACA 58.953 40.000 15.58 8.05 0.00 2.29
57 58 6.528014 TCGATCAAGTCTAGAGTTCGATAC 57.472 41.667 15.58 11.73 0.00 2.24
58 59 7.494952 TCTTTCGATCAAGTCTAGAGTTCGATA 59.505 37.037 18.73 14.52 0.00 2.92
59 60 6.316640 TCTTTCGATCAAGTCTAGAGTTCGAT 59.683 38.462 18.73 18.22 0.00 3.59
60 61 5.642491 TCTTTCGATCAAGTCTAGAGTTCGA 59.358 40.000 15.58 15.58 0.00 3.71
61 62 5.870444 TCTTTCGATCAAGTCTAGAGTTCG 58.130 41.667 9.98 11.21 0.00 3.95
62 63 8.429299 GTTTTCTTTCGATCAAGTCTAGAGTTC 58.571 37.037 9.98 0.00 0.00 3.01
63 64 8.145122 AGTTTTCTTTCGATCAAGTCTAGAGTT 58.855 33.333 7.02 7.02 0.00 3.01
64 65 7.662897 AGTTTTCTTTCGATCAAGTCTAGAGT 58.337 34.615 0.00 0.00 0.00 3.24
65 66 9.796120 ATAGTTTTCTTTCGATCAAGTCTAGAG 57.204 33.333 0.00 0.00 0.00 2.43
66 67 9.790389 GATAGTTTTCTTTCGATCAAGTCTAGA 57.210 33.333 0.00 0.00 0.00 2.43
67 68 9.026074 GGATAGTTTTCTTTCGATCAAGTCTAG 57.974 37.037 0.00 0.00 0.00 2.43
68 69 8.750298 AGGATAGTTTTCTTTCGATCAAGTCTA 58.250 33.333 0.00 0.00 0.00 2.59
69 70 7.616313 AGGATAGTTTTCTTTCGATCAAGTCT 58.384 34.615 0.00 0.00 0.00 3.24
70 71 7.835634 AGGATAGTTTTCTTTCGATCAAGTC 57.164 36.000 0.00 0.00 0.00 3.01
71 72 7.764901 GGTAGGATAGTTTTCTTTCGATCAAGT 59.235 37.037 0.00 0.00 0.00 3.16
72 73 7.764443 TGGTAGGATAGTTTTCTTTCGATCAAG 59.236 37.037 0.00 0.00 0.00 3.02
73 74 7.548075 GTGGTAGGATAGTTTTCTTTCGATCAA 59.452 37.037 0.00 0.00 0.00 2.57
74 75 7.039882 GTGGTAGGATAGTTTTCTTTCGATCA 58.960 38.462 0.00 0.00 0.00 2.92
75 76 7.222999 CAGTGGTAGGATAGTTTTCTTTCGATC 59.777 40.741 0.00 0.00 0.00 3.69
76 77 7.042335 CAGTGGTAGGATAGTTTTCTTTCGAT 58.958 38.462 0.00 0.00 0.00 3.59
77 78 6.395629 CAGTGGTAGGATAGTTTTCTTTCGA 58.604 40.000 0.00 0.00 0.00 3.71
78 79 5.063564 GCAGTGGTAGGATAGTTTTCTTTCG 59.936 44.000 0.00 0.00 0.00 3.46
79 80 5.063564 CGCAGTGGTAGGATAGTTTTCTTTC 59.936 44.000 0.00 0.00 0.00 2.62
80 81 4.935808 CGCAGTGGTAGGATAGTTTTCTTT 59.064 41.667 0.00 0.00 0.00 2.52
81 82 4.504858 CGCAGTGGTAGGATAGTTTTCTT 58.495 43.478 0.00 0.00 0.00 2.52
82 83 3.679083 GCGCAGTGGTAGGATAGTTTTCT 60.679 47.826 0.30 0.00 0.00 2.52
83 84 2.608090 GCGCAGTGGTAGGATAGTTTTC 59.392 50.000 0.30 0.00 0.00 2.29
84 85 2.236395 AGCGCAGTGGTAGGATAGTTTT 59.764 45.455 11.47 0.00 0.00 2.43
85 86 1.831736 AGCGCAGTGGTAGGATAGTTT 59.168 47.619 11.47 0.00 0.00 2.66
86 87 1.486211 AGCGCAGTGGTAGGATAGTT 58.514 50.000 11.47 0.00 0.00 2.24
87 88 1.955080 GTAGCGCAGTGGTAGGATAGT 59.045 52.381 11.47 0.00 0.00 2.12
88 89 2.030717 CAGTAGCGCAGTGGTAGGATAG 60.031 54.545 11.47 0.00 0.00 2.08
89 90 1.954382 CAGTAGCGCAGTGGTAGGATA 59.046 52.381 11.47 0.00 0.00 2.59
90 91 0.747255 CAGTAGCGCAGTGGTAGGAT 59.253 55.000 11.47 0.00 0.00 3.24
91 92 1.320344 CCAGTAGCGCAGTGGTAGGA 61.320 60.000 19.53 0.00 42.18 2.94
92 93 1.141881 CCAGTAGCGCAGTGGTAGG 59.858 63.158 19.53 5.87 42.18 3.18
93 94 0.530744 TTCCAGTAGCGCAGTGGTAG 59.469 55.000 23.94 7.79 46.58 3.18
94 95 0.970640 TTTCCAGTAGCGCAGTGGTA 59.029 50.000 23.94 16.57 46.58 3.25
157 158 9.672673 TCATTCAGAAAAATTTGGTTGGTTTAA 57.327 25.926 0.00 0.00 0.00 1.52
158 159 9.672673 TTCATTCAGAAAAATTTGGTTGGTTTA 57.327 25.926 0.00 0.00 32.05 2.01
159 160 8.572855 TTCATTCAGAAAAATTTGGTTGGTTT 57.427 26.923 0.00 0.00 32.05 3.27
160 161 8.572855 TTTCATTCAGAAAAATTTGGTTGGTT 57.427 26.923 0.00 0.00 43.00 3.67
161 162 7.282901 CCTTTCATTCAGAAAAATTTGGTTGGT 59.717 33.333 0.00 0.00 45.11 3.67
162 163 7.641760 CCTTTCATTCAGAAAAATTTGGTTGG 58.358 34.615 0.00 0.00 45.11 3.77
163 164 7.134163 GCCTTTCATTCAGAAAAATTTGGTTG 58.866 34.615 0.00 0.00 45.11 3.77
164 165 6.827762 TGCCTTTCATTCAGAAAAATTTGGTT 59.172 30.769 0.00 0.00 45.11 3.67
165 166 6.355747 TGCCTTTCATTCAGAAAAATTTGGT 58.644 32.000 0.00 0.00 45.11 3.67
166 167 6.864360 TGCCTTTCATTCAGAAAAATTTGG 57.136 33.333 0.00 0.00 45.11 3.28
167 168 9.570488 TTTTTGCCTTTCATTCAGAAAAATTTG 57.430 25.926 0.00 0.00 45.11 2.32
190 191 2.348104 GGGAGGGGCGCGAATTTTT 61.348 57.895 12.10 0.00 0.00 1.94
191 192 2.754254 GGGAGGGGCGCGAATTTT 60.754 61.111 12.10 0.00 0.00 1.82
192 193 4.815108 GGGGAGGGGCGCGAATTT 62.815 66.667 12.10 0.00 0.00 1.82
205 206 1.068948 TTCAACAATTCCGAGGGGGA 58.931 50.000 0.00 0.00 45.40 4.81
206 207 1.917872 TTTCAACAATTCCGAGGGGG 58.082 50.000 0.00 0.00 37.02 5.40
207 208 4.220602 AGAAATTTCAACAATTCCGAGGGG 59.779 41.667 19.99 0.00 0.00 4.79
208 209 5.391312 AGAAATTTCAACAATTCCGAGGG 57.609 39.130 19.99 0.00 0.00 4.30
209 210 7.377766 TCTAGAAATTTCAACAATTCCGAGG 57.622 36.000 19.99 0.00 0.00 4.63
210 211 9.846248 ATTTCTAGAAATTTCAACAATTCCGAG 57.154 29.630 22.43 0.00 37.74 4.63
239 402 9.450807 GGGTCATCATAGTTTAAAATTTCATCG 57.549 33.333 0.00 0.00 0.00 3.84
244 407 9.320295 TGGAAGGGTCATCATAGTTTAAAATTT 57.680 29.630 0.00 0.00 0.00 1.82
278 441 3.492656 CCTCTTCGAAGGTGTGTGAAGAA 60.493 47.826 24.37 0.10 44.32 2.52
285 448 0.671781 CAGCCCTCTTCGAAGGTGTG 60.672 60.000 24.37 11.92 34.34 3.82
301 464 1.811679 GCTACAAGCCCTCGTCAGC 60.812 63.158 0.00 0.00 34.48 4.26
335 498 2.224523 ACGGATGAAGCAAGGACTTTGA 60.225 45.455 0.74 0.00 39.21 2.69
382 545 1.153229 CTTTACTGTAGCCGGGCCC 60.153 63.158 17.02 13.57 0.00 5.80
389 552 0.446616 GTTGCGGCCTTTACTGTAGC 59.553 55.000 0.00 0.00 0.00 3.58
393 556 2.906354 AGATAGTTGCGGCCTTTACTG 58.094 47.619 0.00 0.00 0.00 2.74
397 560 3.629142 ACTTAGATAGTTGCGGCCTTT 57.371 42.857 0.00 0.00 31.29 3.11
402 565 8.879759 TGAATTAAGAAACTTAGATAGTTGCGG 58.120 33.333 0.00 0.00 46.34 5.69
403 566 9.907576 CTGAATTAAGAAACTTAGATAGTTGCG 57.092 33.333 0.00 0.00 46.34 4.85
429 592 5.417894 CCCTTAGTCCCAAAATAAGTGGAAC 59.582 44.000 0.00 0.00 38.54 3.62
434 597 4.325109 GGCTCCCTTAGTCCCAAAATAAGT 60.325 45.833 0.00 0.00 0.00 2.24
448 611 7.672239 ACTTAAAATGTTACAATGGCTCCCTTA 59.328 33.333 0.00 0.00 0.00 2.69
449 612 6.496911 ACTTAAAATGTTACAATGGCTCCCTT 59.503 34.615 0.00 0.00 0.00 3.95
452 615 6.687604 ACACTTAAAATGTTACAATGGCTCC 58.312 36.000 0.00 0.00 0.00 4.70
481 648 7.001099 AGACACTTATTTTAGGACGGAGAAA 57.999 36.000 0.00 0.00 0.00 2.52
487 654 7.653767 AAGTTGAGACACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
543 710 1.095807 GCGCTACAATGGTTCCCTCC 61.096 60.000 0.00 0.00 0.00 4.30
557 724 6.348458 GCATGAATTGTATAATGGAAGCGCTA 60.348 38.462 12.05 0.00 0.00 4.26
559 726 4.618489 GCATGAATTGTATAATGGAAGCGC 59.382 41.667 0.00 0.00 0.00 5.92
561 728 9.350357 CATAAGCATGAATTGTATAATGGAAGC 57.650 33.333 0.00 0.00 33.67 3.86
581 748 4.686554 CCGAGTTAGATAAGGCACATAAGC 59.313 45.833 0.00 0.00 0.00 3.09
589 756 3.737032 AAGCTCCGAGTTAGATAAGGC 57.263 47.619 0.00 0.00 0.00 4.35
590 757 5.263968 TCAAAGCTCCGAGTTAGATAAGG 57.736 43.478 0.00 0.00 0.00 2.69
591 758 6.507900 TGATCAAAGCTCCGAGTTAGATAAG 58.492 40.000 0.00 0.00 0.00 1.73
592 759 6.465439 TGATCAAAGCTCCGAGTTAGATAA 57.535 37.500 0.00 0.00 0.00 1.75
593 760 6.465439 TTGATCAAAGCTCCGAGTTAGATA 57.535 37.500 5.45 0.00 0.00 1.98
594 761 5.344743 TTGATCAAAGCTCCGAGTTAGAT 57.655 39.130 5.45 0.00 0.00 1.98
595 762 4.801330 TTGATCAAAGCTCCGAGTTAGA 57.199 40.909 5.45 0.00 0.00 2.10
596 763 5.171476 TCTTTGATCAAAGCTCCGAGTTAG 58.829 41.667 33.93 14.32 45.48 2.34
597 764 5.147330 TCTTTGATCAAAGCTCCGAGTTA 57.853 39.130 33.93 16.88 45.48 2.24
598 765 4.008074 TCTTTGATCAAAGCTCCGAGTT 57.992 40.909 33.93 0.00 45.48 3.01
599 766 3.685139 TCTTTGATCAAAGCTCCGAGT 57.315 42.857 33.93 0.00 45.48 4.18
600 767 3.373439 CCTTCTTTGATCAAAGCTCCGAG 59.627 47.826 33.93 24.77 45.48 4.63
601 768 3.338249 CCTTCTTTGATCAAAGCTCCGA 58.662 45.455 33.93 19.52 45.48 4.55
602 769 2.421424 CCCTTCTTTGATCAAAGCTCCG 59.579 50.000 33.93 22.57 45.48 4.63
603 770 3.425659 ACCCTTCTTTGATCAAAGCTCC 58.574 45.455 33.93 0.00 45.48 4.70
604 771 5.459536 AAACCCTTCTTTGATCAAAGCTC 57.540 39.130 33.93 0.00 45.48 4.09
605 772 4.281941 GGAAACCCTTCTTTGATCAAAGCT 59.718 41.667 33.93 16.65 45.48 3.74
606 773 4.560128 GGAAACCCTTCTTTGATCAAAGC 58.440 43.478 33.93 20.91 45.48 3.51
623 790 0.330267 TGGAAATCGGAGGGGGAAAC 59.670 55.000 0.00 0.00 0.00 2.78
624 791 1.304891 ATGGAAATCGGAGGGGGAAA 58.695 50.000 0.00 0.00 0.00 3.13
625 792 1.304891 AATGGAAATCGGAGGGGGAA 58.695 50.000 0.00 0.00 0.00 3.97
626 793 2.199927 TAATGGAAATCGGAGGGGGA 57.800 50.000 0.00 0.00 0.00 4.81
627 794 2.489073 CCTTAATGGAAATCGGAGGGGG 60.489 54.545 0.00 0.00 38.35 5.40
628 795 2.489073 CCCTTAATGGAAATCGGAGGGG 60.489 54.545 0.00 0.00 38.92 4.79
629 796 2.441750 TCCCTTAATGGAAATCGGAGGG 59.558 50.000 0.00 0.00 42.96 4.30
630 797 3.857157 TCCCTTAATGGAAATCGGAGG 57.143 47.619 0.00 0.00 38.35 4.30
638 805 4.157656 CGCTGTTCATTTCCCTTAATGGAA 59.842 41.667 8.03 8.03 42.62 3.53
639 806 3.694072 CGCTGTTCATTTCCCTTAATGGA 59.306 43.478 0.00 0.00 36.41 3.41
640 807 3.694072 TCGCTGTTCATTTCCCTTAATGG 59.306 43.478 0.00 0.00 36.41 3.16
641 808 4.963276 TCGCTGTTCATTTCCCTTAATG 57.037 40.909 0.00 0.00 36.95 1.90
642 809 5.010282 AGTTCGCTGTTCATTTCCCTTAAT 58.990 37.500 0.00 0.00 0.00 1.40
643 810 4.394729 AGTTCGCTGTTCATTTCCCTTAA 58.605 39.130 0.00 0.00 0.00 1.85
644 811 4.015872 AGTTCGCTGTTCATTTCCCTTA 57.984 40.909 0.00 0.00 0.00 2.69
645 812 2.863809 AGTTCGCTGTTCATTTCCCTT 58.136 42.857 0.00 0.00 0.00 3.95
646 813 2.568623 AGTTCGCTGTTCATTTCCCT 57.431 45.000 0.00 0.00 0.00 4.20
647 814 3.071479 TGTAGTTCGCTGTTCATTTCCC 58.929 45.455 0.00 0.00 0.00 3.97
648 815 4.712763 CTTGTAGTTCGCTGTTCATTTCC 58.287 43.478 0.00 0.00 0.00 3.13
649 816 4.151798 GCTTGTAGTTCGCTGTTCATTTC 58.848 43.478 0.00 0.00 0.00 2.17
650 817 3.563808 TGCTTGTAGTTCGCTGTTCATTT 59.436 39.130 0.00 0.00 0.00 2.32
651 818 3.138304 TGCTTGTAGTTCGCTGTTCATT 58.862 40.909 0.00 0.00 0.00 2.57
652 819 2.766313 TGCTTGTAGTTCGCTGTTCAT 58.234 42.857 0.00 0.00 0.00 2.57
653 820 2.232756 TGCTTGTAGTTCGCTGTTCA 57.767 45.000 0.00 0.00 0.00 3.18
654 821 2.159653 CCATGCTTGTAGTTCGCTGTTC 60.160 50.000 0.00 0.00 0.00 3.18
655 822 1.806542 CCATGCTTGTAGTTCGCTGTT 59.193 47.619 0.00 0.00 0.00 3.16
656 823 1.442769 CCATGCTTGTAGTTCGCTGT 58.557 50.000 0.00 0.00 0.00 4.40
657 824 0.729116 CCCATGCTTGTAGTTCGCTG 59.271 55.000 0.00 0.00 0.00 5.18
658 825 0.324943 ACCCATGCTTGTAGTTCGCT 59.675 50.000 0.00 0.00 0.00 4.93
659 826 2.018542 TACCCATGCTTGTAGTTCGC 57.981 50.000 0.00 0.00 0.00 4.70
660 827 5.560966 AAAATACCCATGCTTGTAGTTCG 57.439 39.130 0.00 0.00 0.00 3.95
661 828 8.736244 TCTTAAAAATACCCATGCTTGTAGTTC 58.264 33.333 0.00 0.00 0.00 3.01
662 829 8.520351 GTCTTAAAAATACCCATGCTTGTAGTT 58.480 33.333 0.00 0.00 0.00 2.24
663 830 7.668052 TGTCTTAAAAATACCCATGCTTGTAGT 59.332 33.333 0.00 0.00 0.00 2.73
664 831 8.050778 TGTCTTAAAAATACCCATGCTTGTAG 57.949 34.615 0.00 0.00 0.00 2.74
665 832 7.885922 TCTGTCTTAAAAATACCCATGCTTGTA 59.114 33.333 0.00 0.00 0.00 2.41
666 833 6.719370 TCTGTCTTAAAAATACCCATGCTTGT 59.281 34.615 0.00 0.00 0.00 3.16
667 834 7.029563 GTCTGTCTTAAAAATACCCATGCTTG 58.970 38.462 0.00 0.00 0.00 4.01
668 835 6.152831 GGTCTGTCTTAAAAATACCCATGCTT 59.847 38.462 0.00 0.00 0.00 3.91
669 836 5.652452 GGTCTGTCTTAAAAATACCCATGCT 59.348 40.000 0.00 0.00 0.00 3.79
670 837 5.417580 TGGTCTGTCTTAAAAATACCCATGC 59.582 40.000 0.00 0.00 0.00 4.06
671 838 7.339212 TGATGGTCTGTCTTAAAAATACCCATG 59.661 37.037 0.00 0.00 0.00 3.66
672 839 7.410174 TGATGGTCTGTCTTAAAAATACCCAT 58.590 34.615 0.00 0.00 0.00 4.00
673 840 6.785076 TGATGGTCTGTCTTAAAAATACCCA 58.215 36.000 0.00 0.00 0.00 4.51
674 841 6.183360 GCTGATGGTCTGTCTTAAAAATACCC 60.183 42.308 0.00 0.00 0.00 3.69
675 842 6.599638 AGCTGATGGTCTGTCTTAAAAATACC 59.400 38.462 0.00 0.00 0.00 2.73
676 843 7.617041 AGCTGATGGTCTGTCTTAAAAATAC 57.383 36.000 0.00 0.00 0.00 1.89
677 844 8.635765 AAAGCTGATGGTCTGTCTTAAAAATA 57.364 30.769 0.00 0.00 0.00 1.40
678 845 7.530426 AAAGCTGATGGTCTGTCTTAAAAAT 57.470 32.000 0.00 0.00 0.00 1.82
679 846 6.959639 AAAGCTGATGGTCTGTCTTAAAAA 57.040 33.333 0.00 0.00 0.00 1.94
680 847 6.959639 AAAAGCTGATGGTCTGTCTTAAAA 57.040 33.333 0.00 0.00 0.00 1.52
681 848 6.959639 AAAAAGCTGATGGTCTGTCTTAAA 57.040 33.333 0.00 0.00 0.00 1.52
682 849 9.905713 ATATAAAAAGCTGATGGTCTGTCTTAA 57.094 29.630 0.00 0.00 0.00 1.85
683 850 9.905713 AATATAAAAAGCTGATGGTCTGTCTTA 57.094 29.630 0.00 0.00 0.00 2.10
684 851 8.814038 AATATAAAAAGCTGATGGTCTGTCTT 57.186 30.769 0.00 0.00 0.00 3.01
685 852 8.814038 AAATATAAAAAGCTGATGGTCTGTCT 57.186 30.769 0.00 0.00 0.00 3.41
720 887 7.925993 TGTAAGTTGTAACTGAAACCAGAATG 58.074 34.615 0.00 0.00 39.66 2.67
721 888 8.403236 GTTGTAAGTTGTAACTGAAACCAGAAT 58.597 33.333 0.00 0.00 39.66 2.40
722 889 7.148205 GGTTGTAAGTTGTAACTGAAACCAGAA 60.148 37.037 20.39 3.79 41.46 3.02
723 890 6.316890 GGTTGTAAGTTGTAACTGAAACCAGA 59.683 38.462 20.39 2.80 41.46 3.86
724 891 6.317893 AGGTTGTAAGTTGTAACTGAAACCAG 59.682 38.462 23.80 0.00 42.77 4.00
725 892 6.181908 AGGTTGTAAGTTGTAACTGAAACCA 58.818 36.000 23.80 7.87 42.77 3.67
726 893 6.316890 TGAGGTTGTAAGTTGTAACTGAAACC 59.683 38.462 18.98 18.98 41.78 3.27
727 894 7.311364 TGAGGTTGTAAGTTGTAACTGAAAC 57.689 36.000 0.00 4.08 39.66 2.78
728 895 7.390996 TGTTGAGGTTGTAAGTTGTAACTGAAA 59.609 33.333 0.00 0.00 39.66 2.69
729 896 6.879993 TGTTGAGGTTGTAAGTTGTAACTGAA 59.120 34.615 0.00 0.00 39.66 3.02
730 897 6.408035 TGTTGAGGTTGTAAGTTGTAACTGA 58.592 36.000 0.00 0.00 39.66 3.41
731 898 6.671614 TGTTGAGGTTGTAAGTTGTAACTG 57.328 37.500 0.00 0.00 39.66 3.16
732 899 7.280356 AGATGTTGAGGTTGTAAGTTGTAACT 58.720 34.615 0.00 0.00 42.04 2.24
733 900 7.225931 TGAGATGTTGAGGTTGTAAGTTGTAAC 59.774 37.037 0.00 0.00 0.00 2.50
734 901 7.225931 GTGAGATGTTGAGGTTGTAAGTTGTAA 59.774 37.037 0.00 0.00 0.00 2.41
735 902 6.704493 GTGAGATGTTGAGGTTGTAAGTTGTA 59.296 38.462 0.00 0.00 0.00 2.41
736 903 5.527582 GTGAGATGTTGAGGTTGTAAGTTGT 59.472 40.000 0.00 0.00 0.00 3.32
737 904 5.527214 TGTGAGATGTTGAGGTTGTAAGTTG 59.473 40.000 0.00 0.00 0.00 3.16
738 905 5.680619 TGTGAGATGTTGAGGTTGTAAGTT 58.319 37.500 0.00 0.00 0.00 2.66
739 906 5.290493 TGTGAGATGTTGAGGTTGTAAGT 57.710 39.130 0.00 0.00 0.00 2.24
740 907 5.180117 CCTTGTGAGATGTTGAGGTTGTAAG 59.820 44.000 0.00 0.00 0.00 2.34
741 908 5.063204 CCTTGTGAGATGTTGAGGTTGTAA 58.937 41.667 0.00 0.00 0.00 2.41
742 909 4.504864 CCCTTGTGAGATGTTGAGGTTGTA 60.505 45.833 0.00 0.00 0.00 2.41
743 910 3.480470 CCTTGTGAGATGTTGAGGTTGT 58.520 45.455 0.00 0.00 0.00 3.32
744 911 2.816087 CCCTTGTGAGATGTTGAGGTTG 59.184 50.000 0.00 0.00 0.00 3.77
745 912 2.443255 ACCCTTGTGAGATGTTGAGGTT 59.557 45.455 0.00 0.00 0.00 3.50
746 913 2.057922 ACCCTTGTGAGATGTTGAGGT 58.942 47.619 0.00 0.00 0.00 3.85
747 914 2.867109 ACCCTTGTGAGATGTTGAGG 57.133 50.000 0.00 0.00 0.00 3.86
748 915 3.369892 CCCTACCCTTGTGAGATGTTGAG 60.370 52.174 0.00 0.00 0.00 3.02
749 916 2.571653 CCCTACCCTTGTGAGATGTTGA 59.428 50.000 0.00 0.00 0.00 3.18
750 917 2.571653 TCCCTACCCTTGTGAGATGTTG 59.428 50.000 0.00 0.00 0.00 3.33
751 918 2.572104 GTCCCTACCCTTGTGAGATGTT 59.428 50.000 0.00 0.00 0.00 2.71
752 919 2.188817 GTCCCTACCCTTGTGAGATGT 58.811 52.381 0.00 0.00 0.00 3.06
753 920 1.486726 GGTCCCTACCCTTGTGAGATG 59.513 57.143 0.00 0.00 40.21 2.90
754 921 1.880941 GGTCCCTACCCTTGTGAGAT 58.119 55.000 0.00 0.00 40.21 2.75
755 922 3.393854 GGTCCCTACCCTTGTGAGA 57.606 57.895 0.00 0.00 40.21 3.27
783 950 1.623311 GCATGCCCTACCCTTGTTTTT 59.377 47.619 6.36 0.00 0.00 1.94
784 951 1.203174 AGCATGCCCTACCCTTGTTTT 60.203 47.619 15.66 0.00 0.00 2.43
785 952 0.409484 AGCATGCCCTACCCTTGTTT 59.591 50.000 15.66 0.00 0.00 2.83
786 953 0.409484 AAGCATGCCCTACCCTTGTT 59.591 50.000 15.66 0.00 0.00 2.83
791 958 2.437085 AAACTAAGCATGCCCTACCC 57.563 50.000 15.66 0.00 0.00 3.69
812 979 7.176690 CCTGCCCTACTAGATTCAAAAAGAAAA 59.823 37.037 0.00 0.00 40.22 2.29
813 980 6.659242 CCTGCCCTACTAGATTCAAAAAGAAA 59.341 38.462 0.00 0.00 40.22 2.52
814 981 6.180472 CCTGCCCTACTAGATTCAAAAAGAA 58.820 40.000 0.00 0.00 41.28 2.52
815 982 5.745227 CCTGCCCTACTAGATTCAAAAAGA 58.255 41.667 0.00 0.00 0.00 2.52
816 983 4.336713 GCCTGCCCTACTAGATTCAAAAAG 59.663 45.833 0.00 0.00 0.00 2.27
822 989 3.898741 AGTAAGCCTGCCCTACTAGATTC 59.101 47.826 0.00 0.00 0.00 2.52
867 1035 2.024414 GCTGGCCCAATTTATTCTCGT 58.976 47.619 0.00 0.00 0.00 4.18
868 1036 1.338020 GGCTGGCCCAATTTATTCTCG 59.662 52.381 0.00 0.00 0.00 4.04
931 1134 4.041917 CGGCCGCACATGCAAACT 62.042 61.111 14.67 0.00 42.21 2.66
960 1163 3.445450 AGTCTGCTGGATATATACAGGCG 59.555 47.826 23.69 12.98 39.21 5.52
963 1166 6.542005 AGATCGAGTCTGCTGGATATATACAG 59.458 42.308 19.27 19.27 39.72 2.74
965 1168 6.292649 CGAGATCGAGTCTGCTGGATATATAC 60.293 46.154 0.00 0.00 39.72 1.47
966 1169 5.755861 CGAGATCGAGTCTGCTGGATATATA 59.244 44.000 0.00 0.00 39.72 0.86
1304 1522 3.535962 GCCGAGGGAGCTCTGGAG 61.536 72.222 14.64 3.37 0.00 3.86
1853 2097 3.305094 CACGTGTAGAAGTTGACGTTGTT 59.695 43.478 7.58 0.00 42.10 2.83
1990 2247 4.648007 AGGTGAACCTGCTCCAGA 57.352 55.556 0.00 0.00 46.55 3.86
2115 2384 1.615424 AAGCCATACCCGGTCCTGT 60.615 57.895 0.00 0.00 0.00 4.00
2144 2413 2.743928 CAGCCGCTCCAGGTTGTC 60.744 66.667 0.00 0.00 37.66 3.18
2152 2421 0.813210 CTTCAATCTCCAGCCGCTCC 60.813 60.000 0.00 0.00 0.00 4.70
2167 2436 2.659016 CACCCGCAGAGCTCTTCA 59.341 61.111 15.27 0.00 0.00 3.02
2249 2518 0.904865 AACCTGAGATGGAGGTCGCA 60.905 55.000 0.00 0.00 43.42 5.10
2337 2606 1.026182 GTTGATGGATCTGCACGGCA 61.026 55.000 0.00 0.00 36.92 5.69
2539 2820 0.178973 TGACCACCTCTTCGAGACCA 60.179 55.000 0.00 0.00 0.00 4.02
2566 2847 0.337082 TCGAGTCATACCCCTTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
2586 2867 4.096003 CCTTCCGGTCCATGCGGT 62.096 66.667 0.00 0.00 0.00 5.68
2750 3034 6.649973 TCATAAAATTGCAACCCATTGTCAAG 59.350 34.615 0.00 0.00 38.17 3.02
2773 3060 1.735973 CTCATCATCCTCGCCGTCA 59.264 57.895 0.00 0.00 0.00 4.35
2774 3061 1.006805 CCTCATCATCCTCGCCGTC 60.007 63.158 0.00 0.00 0.00 4.79
2775 3062 0.829602 ATCCTCATCATCCTCGCCGT 60.830 55.000 0.00 0.00 0.00 5.68
2776 3063 0.389556 CATCCTCATCATCCTCGCCG 60.390 60.000 0.00 0.00 0.00 6.46
2777 3064 0.972134 TCATCCTCATCATCCTCGCC 59.028 55.000 0.00 0.00 0.00 5.54
2778 3065 1.067000 CCTCATCCTCATCATCCTCGC 60.067 57.143 0.00 0.00 0.00 5.03
2779 3066 2.523245 TCCTCATCCTCATCATCCTCG 58.477 52.381 0.00 0.00 0.00 4.63
2780 3067 4.081531 GTCATCCTCATCCTCATCATCCTC 60.082 50.000 0.00 0.00 0.00 3.71
2781 3068 3.839490 GTCATCCTCATCCTCATCATCCT 59.161 47.826 0.00 0.00 0.00 3.24
2782 3069 3.368220 CGTCATCCTCATCCTCATCATCC 60.368 52.174 0.00 0.00 0.00 3.51
2803 3108 2.623889 GGGGGATATATCATCCTCGTCG 59.376 54.545 14.60 0.00 39.60 5.12
2890 3195 3.752339 CCGCCCTTTGCCTTCAGC 61.752 66.667 0.00 0.00 44.14 4.26
2908 3213 2.584791 CTTGCTTGCACCGTGATTAAC 58.415 47.619 1.65 0.00 0.00 2.01
2911 3216 0.537143 TCCTTGCTTGCACCGTGATT 60.537 50.000 1.65 0.00 0.00 2.57
2922 3227 1.271127 GGCTCCTCCTCTCCTTGCTT 61.271 60.000 0.00 0.00 0.00 3.91
2923 3228 1.688884 GGCTCCTCCTCTCCTTGCT 60.689 63.158 0.00 0.00 0.00 3.91
2924 3229 1.557269 TTGGCTCCTCCTCTCCTTGC 61.557 60.000 0.00 0.00 35.26 4.01
2961 3266 0.996762 TTCCTCAACCCAACCCCAGT 60.997 55.000 0.00 0.00 0.00 4.00
2962 3267 0.251341 CTTCCTCAACCCAACCCCAG 60.251 60.000 0.00 0.00 0.00 4.45
2972 3277 3.835395 TCTCCTCCTTCTTCTTCCTCAAC 59.165 47.826 0.00 0.00 0.00 3.18
2976 3281 3.551635 TGTCTCCTCCTTCTTCTTCCT 57.448 47.619 0.00 0.00 0.00 3.36
3024 3329 2.435938 GAGAAATCGGCGGCACCA 60.436 61.111 10.53 0.00 39.03 4.17
3032 3337 1.009829 CTTTGCGGAGGAGAAATCGG 58.990 55.000 0.00 0.00 0.00 4.18
3149 3455 1.616628 GAGGAGCCAAAGGAGGGGA 60.617 63.158 0.00 0.00 0.00 4.81
3159 3465 2.300967 GGACATGGTGGAGGAGCCA 61.301 63.158 0.00 0.00 46.96 4.75
3172 3478 0.749649 GAGCGATCTGACTGGGACAT 59.250 55.000 0.00 0.00 38.20 3.06
3186 3492 1.371183 CACAACCCAAGAGGAGCGA 59.629 57.895 0.00 0.00 39.89 4.93
3216 3522 4.610680 GCCACTGACGACAAACAAAGATAC 60.611 45.833 0.00 0.00 0.00 2.24
3219 3525 1.668751 GCCACTGACGACAAACAAAGA 59.331 47.619 0.00 0.00 0.00 2.52
3222 3528 0.460459 TCGCCACTGACGACAAACAA 60.460 50.000 0.00 0.00 33.96 2.83
3227 3533 1.212751 CAGATCGCCACTGACGACA 59.787 57.895 0.00 0.00 43.23 4.35
3233 3539 3.857854 GCGCACAGATCGCCACTG 61.858 66.667 0.30 0.00 46.18 3.66
3242 3548 2.666190 GTCAGCAAGGCGCACAGA 60.666 61.111 10.83 0.00 46.13 3.41
3283 3589 4.194720 AAGTAGCGGCGCCTCGAG 62.195 66.667 30.40 10.13 0.00 4.04
3357 3663 1.450531 CTGATGGATGCGAAAGGCCC 61.451 60.000 0.00 0.00 42.61 5.80
3413 3725 2.798499 GCGACCGGGAATCATATATCCG 60.798 54.545 6.32 3.41 40.32 4.18
3536 3849 4.858692 CCAAACCGCTATTCAACAAATCAG 59.141 41.667 0.00 0.00 0.00 2.90
3590 3907 3.509266 GTGACACACACGTTCAAGC 57.491 52.632 0.00 0.00 39.78 4.01
3599 3916 8.332401 AACAATAGTTACATGGTGTGACACACA 61.332 37.037 33.47 22.17 42.70 3.72
3605 3922 7.936847 AGAAGAAACAATAGTTACATGGTGTGA 59.063 33.333 0.00 0.00 36.84 3.58
3623 3940 8.663911 CAATTATTCAGACCAGAGAGAAGAAAC 58.336 37.037 0.00 0.00 0.00 2.78
3627 3944 8.961294 ATTCAATTATTCAGACCAGAGAGAAG 57.039 34.615 0.00 0.00 0.00 2.85
3647 3964 8.618702 ACACAATCATGGCAAAATTTATTCAA 57.381 26.923 0.00 0.00 0.00 2.69
3648 3965 8.618702 AACACAATCATGGCAAAATTTATTCA 57.381 26.923 0.00 0.00 0.00 2.57
3658 3975 4.669206 ACTCAAAACACAATCATGGCAA 57.331 36.364 0.00 0.00 0.00 4.52
3666 3983 7.334171 TGATGATCGATGTACTCAAAACACAAT 59.666 33.333 0.54 0.00 0.00 2.71
3667 3984 6.648725 TGATGATCGATGTACTCAAAACACAA 59.351 34.615 0.54 0.00 0.00 3.33
3671 3988 7.295952 AGTTGATGATCGATGTACTCAAAAC 57.704 36.000 0.54 4.89 0.00 2.43
3673 3990 6.873605 ACAAGTTGATGATCGATGTACTCAAA 59.126 34.615 10.54 0.00 0.00 2.69
3674 3991 6.311200 CACAAGTTGATGATCGATGTACTCAA 59.689 38.462 10.54 3.64 0.00 3.02
3675 3992 5.807011 CACAAGTTGATGATCGATGTACTCA 59.193 40.000 10.54 0.00 0.00 3.41
3676 3993 6.036470 TCACAAGTTGATGATCGATGTACTC 58.964 40.000 10.54 0.00 0.00 2.59
3677 3994 5.965922 TCACAAGTTGATGATCGATGTACT 58.034 37.500 10.54 0.00 0.00 2.73
3678 3995 5.807520 ACTCACAAGTTGATGATCGATGTAC 59.192 40.000 10.54 0.00 32.17 2.90
3679 3996 5.807011 CACTCACAAGTTGATGATCGATGTA 59.193 40.000 10.54 0.00 31.71 2.29
3680 3997 4.628766 CACTCACAAGTTGATGATCGATGT 59.371 41.667 10.54 0.00 31.71 3.06
3681 3998 4.866486 TCACTCACAAGTTGATGATCGATG 59.134 41.667 10.54 6.41 31.71 3.84
3682 3999 5.077134 TCACTCACAAGTTGATGATCGAT 57.923 39.130 10.54 0.00 31.71 3.59
3683 4000 4.519540 TCACTCACAAGTTGATGATCGA 57.480 40.909 10.54 6.41 31.71 3.59
3684 4001 4.435253 GCTTCACTCACAAGTTGATGATCG 60.435 45.833 10.54 4.42 31.71 3.69
3685 4002 4.453478 TGCTTCACTCACAAGTTGATGATC 59.547 41.667 10.54 4.20 31.71 2.92
3686 4003 4.214971 GTGCTTCACTCACAAGTTGATGAT 59.785 41.667 10.54 0.00 31.71 2.45
3687 4004 3.561310 GTGCTTCACTCACAAGTTGATGA 59.439 43.478 10.54 8.68 31.71 2.92
3688 4005 3.313249 TGTGCTTCACTCACAAGTTGATG 59.687 43.478 10.54 4.57 41.01 3.07
3689 4006 3.313526 GTGTGCTTCACTCACAAGTTGAT 59.686 43.478 10.54 0.00 44.86 2.57
3690 4007 2.677836 GTGTGCTTCACTCACAAGTTGA 59.322 45.455 10.54 0.00 44.86 3.18
3691 4008 2.223340 GGTGTGCTTCACTCACAAGTTG 60.223 50.000 0.00 0.00 44.86 3.16
3692 4009 2.017049 GGTGTGCTTCACTCACAAGTT 58.983 47.619 11.12 0.00 44.86 2.66
3693 4010 1.065491 TGGTGTGCTTCACTCACAAGT 60.065 47.619 11.12 0.00 44.86 3.16
3694 4011 1.667236 TGGTGTGCTTCACTCACAAG 58.333 50.000 11.12 0.00 44.86 3.16
3695 4012 1.948834 CATGGTGTGCTTCACTCACAA 59.051 47.619 11.12 0.00 44.86 3.33
3696 4013 1.596603 CATGGTGTGCTTCACTCACA 58.403 50.000 11.12 0.00 45.50 3.58
3707 4024 1.667236 ACCGATACATGCATGGTGTG 58.333 50.000 29.41 16.18 0.00 3.82
3708 4025 2.418368 AACCGATACATGCATGGTGT 57.582 45.000 29.41 13.94 32.14 4.16
3709 4026 2.423185 ACAAACCGATACATGCATGGTG 59.577 45.455 29.41 15.52 32.14 4.17
3710 4027 2.722094 ACAAACCGATACATGCATGGT 58.278 42.857 29.41 18.02 33.45 3.55
3711 4028 3.119531 ACAACAAACCGATACATGCATGG 60.120 43.478 29.41 14.59 0.00 3.66
3712 4029 3.853103 CACAACAAACCGATACATGCATG 59.147 43.478 25.09 25.09 0.00 4.06
3713 4030 3.673052 GCACAACAAACCGATACATGCAT 60.673 43.478 0.00 0.00 0.00 3.96
3714 4031 2.351253 GCACAACAAACCGATACATGCA 60.351 45.455 0.00 0.00 0.00 3.96
3715 4032 2.095263 AGCACAACAAACCGATACATGC 60.095 45.455 0.00 0.00 0.00 4.06
3716 4033 3.829886 AGCACAACAAACCGATACATG 57.170 42.857 0.00 0.00 0.00 3.21
3717 4034 4.846779 AAAGCACAACAAACCGATACAT 57.153 36.364 0.00 0.00 0.00 2.29
3718 4035 4.142359 ACAAAAGCACAACAAACCGATACA 60.142 37.500 0.00 0.00 0.00 2.29
3719 4036 4.356289 ACAAAAGCACAACAAACCGATAC 58.644 39.130 0.00 0.00 0.00 2.24
3720 4037 4.640789 ACAAAAGCACAACAAACCGATA 57.359 36.364 0.00 0.00 0.00 2.92
3721 4038 3.518634 ACAAAAGCACAACAAACCGAT 57.481 38.095 0.00 0.00 0.00 4.18
3722 4039 2.989840 CAACAAAAGCACAACAAACCGA 59.010 40.909 0.00 0.00 0.00 4.69
3723 4040 2.989840 TCAACAAAAGCACAACAAACCG 59.010 40.909 0.00 0.00 0.00 4.44
3724 4041 3.993736 ACTCAACAAAAGCACAACAAACC 59.006 39.130 0.00 0.00 0.00 3.27
3725 4042 4.447389 ACACTCAACAAAAGCACAACAAAC 59.553 37.500 0.00 0.00 0.00 2.93
3735 4052 6.197655 CACACATCAATCACACTCAACAAAAG 59.802 38.462 0.00 0.00 0.00 2.27
3738 4055 4.497842 GCACACATCAATCACACTCAACAA 60.498 41.667 0.00 0.00 0.00 2.83
3747 4064 0.881118 AACCGGCACACATCAATCAC 59.119 50.000 0.00 0.00 0.00 3.06
3769 4086 1.901948 AGGACACCGAGCGAGTGAA 60.902 57.895 15.02 0.00 38.63 3.18
3770 4087 2.282251 AGGACACCGAGCGAGTGA 60.282 61.111 15.02 0.00 38.63 3.41
3810 4127 8.976986 ATTTGCTTTGTTCTATTGATTGAGAC 57.023 30.769 0.00 0.00 0.00 3.36
3814 4131 8.752766 ACAGATTTGCTTTGTTCTATTGATTG 57.247 30.769 0.00 0.00 0.00 2.67
3823 4140 3.721035 AGGCAACAGATTTGCTTTGTTC 58.279 40.909 8.76 0.00 44.36 3.18
3836 4153 2.861462 TTTTGAAACCGAGGCAACAG 57.139 45.000 0.00 0.00 41.41 3.16
3838 4155 5.116069 TCTTATTTTGAAACCGAGGCAAC 57.884 39.130 0.00 0.00 0.00 4.17
3846 4163 9.474920 TCAATCACATGTTCTTATTTTGAAACC 57.525 29.630 0.00 0.00 0.00 3.27
3870 4187 3.448660 TGATGAGCTTCCTTCTTCGATCA 59.551 43.478 0.00 0.00 0.00 2.92
3871 4188 3.801594 GTGATGAGCTTCCTTCTTCGATC 59.198 47.826 0.00 0.00 0.00 3.69
3878 4195 2.670414 CGACAAGTGATGAGCTTCCTTC 59.330 50.000 0.00 0.00 0.00 3.46
3880 4197 1.066573 CCGACAAGTGATGAGCTTCCT 60.067 52.381 0.00 0.00 0.00 3.36
3885 4202 1.512926 ACAACCGACAAGTGATGAGC 58.487 50.000 0.00 0.00 0.00 4.26
3886 4203 2.480419 GGAACAACCGACAAGTGATGAG 59.520 50.000 0.00 0.00 0.00 2.90
3928 4245 2.813754 TGCTCTTATGTGGTTGCACTTC 59.186 45.455 0.00 0.00 0.00 3.01
3931 4248 3.012518 AGATGCTCTTATGTGGTTGCAC 58.987 45.455 0.00 0.00 33.16 4.57
3957 4274 2.202623 CTAGACGAAGCGCGCCTT 60.203 61.111 30.33 21.10 46.04 4.35
3964 4281 3.117175 TACCGCGCCTAGACGAAGC 62.117 63.158 1.37 0.00 34.06 3.86
3969 4286 1.202382 AGAATTGTACCGCGCCTAGAC 60.202 52.381 0.00 0.00 0.00 2.59
3970 4287 1.108776 AGAATTGTACCGCGCCTAGA 58.891 50.000 0.00 0.00 0.00 2.43
3973 4290 1.530323 AAAAGAATTGTACCGCGCCT 58.470 45.000 0.00 0.00 0.00 5.52
3979 4296 6.569179 TTGGAGCTGTAAAAGAATTGTACC 57.431 37.500 0.00 0.00 0.00 3.34
3983 4300 9.346725 GACTATTTTGGAGCTGTAAAAGAATTG 57.653 33.333 0.00 0.00 0.00 2.32
4015 4333 2.205074 CTATTCATCACTCCCGCACAC 58.795 52.381 0.00 0.00 0.00 3.82
4016 4334 1.138859 CCTATTCATCACTCCCGCACA 59.861 52.381 0.00 0.00 0.00 4.57
4041 4359 2.607526 CGCCATGTTTTTGTGCATCTGA 60.608 45.455 0.00 0.00 0.00 3.27
4044 4362 0.439600 GCGCCATGTTTTTGTGCATC 59.560 50.000 0.00 0.00 0.00 3.91
4058 4376 2.745884 CCACCGAATTGAGCGCCA 60.746 61.111 2.29 0.00 0.00 5.69
4070 4388 3.673484 CTGCAAGTTGGGCCACCG 61.673 66.667 5.23 0.00 40.75 4.94
4073 4391 2.913578 CTGCTGCAAGTTGGGCCA 60.914 61.111 0.00 0.00 35.30 5.36
4111 4429 1.072852 TTGGGCTGCAAATTTGGGC 59.927 52.632 19.47 14.86 0.00 5.36
4113 4431 1.515081 CTGTTGGGCTGCAAATTTGG 58.485 50.000 19.47 5.27 0.00 3.28
4129 4447 2.598394 GGTGTGCATGTGGGCTGT 60.598 61.111 0.00 0.00 34.04 4.40
4169 4487 4.389077 AGCAGACGTTGTAAAATAGAGCAC 59.611 41.667 0.00 0.00 0.00 4.40
4170 4488 4.388773 CAGCAGACGTTGTAAAATAGAGCA 59.611 41.667 0.00 0.00 0.00 4.26
4171 4489 4.201724 CCAGCAGACGTTGTAAAATAGAGC 60.202 45.833 0.00 0.00 0.00 4.09
4210 4528 4.720649 TCATCGTTTTTGGGTGTTGAAA 57.279 36.364 0.00 0.00 0.00 2.69
4219 4537 4.384247 TGCGCTAAAAATCATCGTTTTTGG 59.616 37.500 9.73 5.92 40.43 3.28
4251 4569 0.103937 CTTCAACAGGCGCCCAAAAA 59.896 50.000 26.15 10.73 0.00 1.94
4278 4596 2.288961 TATCAGGTTTCGGTTCGCTC 57.711 50.000 0.00 0.00 0.00 5.03
4298 4616 0.912487 TATTGGTCCTCCCCGCTGTT 60.912 55.000 0.00 0.00 0.00 3.16
4300 4618 0.250467 CATATTGGTCCTCCCCGCTG 60.250 60.000 0.00 0.00 0.00 5.18
4308 4626 5.453339 CCACTACGTTCATCATATTGGTCCT 60.453 44.000 0.00 0.00 0.00 3.85
4309 4627 4.750098 CCACTACGTTCATCATATTGGTCC 59.250 45.833 0.00 0.00 0.00 4.46
4310 4628 4.211374 GCCACTACGTTCATCATATTGGTC 59.789 45.833 0.00 0.00 0.00 4.02
4311 4629 4.127171 GCCACTACGTTCATCATATTGGT 58.873 43.478 0.00 0.00 0.00 3.67
4312 4630 4.126437 TGCCACTACGTTCATCATATTGG 58.874 43.478 0.00 0.00 0.00 3.16
4313 4631 5.733226 TTGCCACTACGTTCATCATATTG 57.267 39.130 0.00 0.00 0.00 1.90
4314 4632 5.239306 CCATTGCCACTACGTTCATCATATT 59.761 40.000 0.00 0.00 0.00 1.28
4408 4755 2.690778 GCGGTTCACCTGCCATGTC 61.691 63.158 0.00 0.00 32.21 3.06
4428 4775 1.732259 GAATACCACTCTGTTGCCACG 59.268 52.381 0.00 0.00 0.00 4.94
4438 4785 4.657436 AACGGATGAGAGAATACCACTC 57.343 45.455 0.00 0.00 34.95 3.51
4453 4800 1.000274 GGCAAGCAAACTCAAACGGAT 60.000 47.619 0.00 0.00 0.00 4.18
4480 4827 0.250901 AGGCAACCGAGCATGTTTCT 60.251 50.000 0.00 0.00 35.83 2.52
4484 4831 1.973281 CCAAGGCAACCGAGCATGT 60.973 57.895 0.00 0.00 35.83 3.21
4514 4861 1.468506 TTACACTGAGCCGGAGTGCA 61.469 55.000 18.93 6.19 44.01 4.57
4529 4876 5.127194 ACGCCTGATGTTATCTTCTCTTACA 59.873 40.000 0.00 0.00 0.00 2.41
4532 4879 4.744795 ACGCCTGATGTTATCTTCTCTT 57.255 40.909 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.