Multiple sequence alignment - TraesCS5B01G350900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G350900 chr5B 100.000 6496 0 0 1 6496 531536886 531543381 0.000000e+00 11996
1 TraesCS5B01G350900 chr5B 83.273 556 89 4 2925 3478 668521176 668520623 5.810000e-140 508
2 TraesCS5B01G350900 chr5B 82.809 413 71 0 1598 2010 668828288 668827876 2.860000e-98 370
3 TraesCS5B01G350900 chr5D 95.922 6548 172 32 1 6496 437340532 437347036 0.000000e+00 10525
4 TraesCS5B01G350900 chr5A 95.644 3765 121 14 2746 6496 552524178 552527913 0.000000e+00 6004
5 TraesCS5B01G350900 chr5A 89.002 2664 181 47 1 2581 552521542 552524176 0.000000e+00 3193
6 TraesCS5B01G350900 chr6D 80.000 305 24 15 6055 6351 63818833 63818558 2.390000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G350900 chr5B 531536886 531543381 6495 False 11996.0 11996 100.000 1 6496 1 chr5B.!!$F1 6495
1 TraesCS5B01G350900 chr5B 668520623 668521176 553 True 508.0 508 83.273 2925 3478 1 chr5B.!!$R1 553
2 TraesCS5B01G350900 chr5D 437340532 437347036 6504 False 10525.0 10525 95.922 1 6496 1 chr5D.!!$F1 6495
3 TraesCS5B01G350900 chr5A 552521542 552527913 6371 False 4598.5 6004 92.323 1 6496 2 chr5A.!!$F1 6495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 310 1.766496 ACCATATAACCCTCCGTGGTG 59.234 52.381 0.0 0.0 39.05 4.17 F
1145 1183 0.174617 GGTTTCGAGCAGGAGAGGAG 59.825 60.000 0.0 0.0 0.00 3.69 F
2582 2697 0.033405 AGATGGCTCATTGGCTTGCT 60.033 50.000 0.0 0.0 42.34 3.91 F
2616 2731 0.400213 AGCCAAGTCGGATGAACCAA 59.600 50.000 0.0 0.0 38.90 3.67 F
3968 4084 0.607489 AACCTCCACATGCAGCTCAC 60.607 55.000 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1583 0.036858 AGAGCTTGGTCGAGCCTTTC 60.037 55.000 12.85 4.91 43.74 2.62 R
2588 2703 0.108615 CCGACTTGGCTCGATTCACT 60.109 55.000 0.00 0.00 35.58 3.41 R
3420 3536 0.749091 TTCCAGCATTGCCTCATCCG 60.749 55.000 4.70 0.00 0.00 4.18 R
4468 4593 2.224281 TGTGATCACACCTTGGAGACAC 60.224 50.000 24.56 0.00 45.40 3.67 R
5503 5629 1.142465 CCACAAGCTGATGAGGCCTAT 59.858 52.381 4.42 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 165 2.365617 AGAAGAGAAAGACGGCTTGACA 59.634 45.455 3.03 0.00 33.79 3.58
184 186 6.485313 TGACACAATTAGTTCCGTGAGAAAAT 59.515 34.615 0.00 0.00 35.85 1.82
219 221 4.282703 AGTTTATCCTCGCCATATAACCGT 59.717 41.667 0.00 0.00 0.00 4.83
254 256 1.877443 ACGGCTTGACGCAATTAGTTT 59.123 42.857 0.00 0.00 41.67 2.66
303 305 2.605257 TCCTCACCATATAACCCTCCG 58.395 52.381 0.00 0.00 0.00 4.63
308 310 1.766496 ACCATATAACCCTCCGTGGTG 59.234 52.381 0.00 0.00 39.05 4.17
312 314 4.322499 CCATATAACCCTCCGTGGTGTATC 60.322 50.000 0.00 0.00 39.05 2.24
511 514 2.420687 GGAGGAGCTGGTAATCCTTGTG 60.421 54.545 0.00 0.00 46.12 3.33
784 792 5.694995 AGTTTTCCTTTTCCATCTCACAGA 58.305 37.500 0.00 0.00 0.00 3.41
1145 1183 0.174617 GGTTTCGAGCAGGAGAGGAG 59.825 60.000 0.00 0.00 0.00 3.69
1247 1285 4.470462 GCTCTAAAACTGATGCAGTGTTG 58.530 43.478 12.10 4.22 44.62 3.33
1486 1527 1.228124 CCACAACCACCACCACGAT 60.228 57.895 0.00 0.00 0.00 3.73
1511 1552 0.665835 CAAGCACAAACAACGCCCTA 59.334 50.000 0.00 0.00 0.00 3.53
1542 1583 4.452733 GCTCTTCCACCGTCCGGG 62.453 72.222 10.91 0.00 43.62 5.73
1721 1762 1.068588 CAGTTCAGGGAAGTGTCGACA 59.931 52.381 15.76 15.76 37.96 4.35
1904 1945 4.299796 ATGGGGCTGCCGGTGTTT 62.300 61.111 13.40 0.00 0.00 2.83
2000 2041 3.379372 AGATCAACAACATATGCAGTGCC 59.621 43.478 13.72 0.00 0.00 5.01
2012 2053 0.837272 GCAGTGCCCTCCAGGTATTA 59.163 55.000 2.85 0.00 38.26 0.98
2061 2114 7.026631 TCAAACATTGGTCTGAAACAAGTAG 57.973 36.000 3.08 0.00 0.00 2.57
2140 2212 8.787852 AGTCATGTTCTTTTTCCTAGATTTGAC 58.212 33.333 0.00 0.00 31.83 3.18
2199 2271 4.336433 CCTGAGAAGCACAGAAGTTTCAAA 59.664 41.667 0.00 0.00 37.54 2.69
2323 2408 4.324254 CCAGTGAAAGCATTTACCCCTCTA 60.324 45.833 0.00 0.00 39.27 2.43
2582 2697 0.033405 AGATGGCTCATTGGCTTGCT 60.033 50.000 0.00 0.00 42.34 3.91
2585 2700 1.246056 TGGCTCATTGGCTTGCTGAC 61.246 55.000 0.00 0.00 42.34 3.51
2588 2703 1.817357 CTCATTGGCTTGCTGACTCA 58.183 50.000 0.00 0.00 0.00 3.41
2614 2729 1.084370 CGAGCCAAGTCGGATGAACC 61.084 60.000 0.00 0.00 36.26 3.62
2616 2731 0.400213 AGCCAAGTCGGATGAACCAA 59.600 50.000 0.00 0.00 38.90 3.67
2671 2786 5.190528 TCTGATCTTCAATGTTAAGGCCTCT 59.809 40.000 5.23 0.00 0.00 3.69
2690 2805 7.707880 GCCTCTAGGGGGTTAAATAACCGAC 62.708 52.000 11.65 10.46 44.97 4.79
2737 2852 3.881937 AATTTCATGAAAGCAGAGGGC 57.118 42.857 24.17 0.00 45.30 5.19
2743 2858 1.683943 TGAAAGCAGAGGGCATATGC 58.316 50.000 19.79 19.79 46.81 3.14
2995 3111 2.030540 CACATGTGCTCAACAAGGGAAG 60.031 50.000 13.94 0.00 43.61 3.46
3120 3236 1.053835 TCTGACCACCACCTTCTGCA 61.054 55.000 0.00 0.00 0.00 4.41
3135 3251 4.102113 GCATGAGCAAGGGGTTGT 57.898 55.556 0.00 0.00 41.58 3.32
3313 3429 2.368548 TGTGCTAGAGTTCTTTCTGCCA 59.631 45.455 0.00 0.00 0.00 4.92
3420 3536 2.027192 TGGTTACAGACAAGGAGATGGC 60.027 50.000 0.00 0.00 0.00 4.40
3491 3607 6.431234 TCAAGGGAAGAATAAAGTTGAAGAGC 59.569 38.462 0.00 0.00 0.00 4.09
3963 4079 1.901591 AAGTCAACCTCCACATGCAG 58.098 50.000 0.00 0.00 0.00 4.41
3968 4084 0.607489 AACCTCCACATGCAGCTCAC 60.607 55.000 0.00 0.00 0.00 3.51
4092 4209 9.578439 ACACGATAAGAACTAAAACAGGTATAC 57.422 33.333 0.00 0.00 0.00 1.47
4185 4302 8.318412 TCTACTAGATAGCCTAGAACTGATCAG 58.682 40.741 21.37 21.37 46.17 2.90
4192 4312 4.759693 AGCCTAGAACTGATCAGTATCTCG 59.240 45.833 28.10 23.17 41.58 4.04
4217 4337 3.367992 TTTGCATTCATCGTTTGCAGT 57.632 38.095 0.00 0.00 46.10 4.40
4306 4426 5.302357 TGTCGCACAGATAGAGCATATAG 57.698 43.478 0.00 0.00 32.95 1.31
4319 4439 9.402320 GATAGAGCATATAGAAGTCATACCAGA 57.598 37.037 0.00 0.00 0.00 3.86
4385 4509 5.066634 TGCTTTCTAGTAGTACAGCTAGCAG 59.933 44.000 18.83 12.15 35.80 4.24
4459 4584 9.842775 ATAGAAAGAAGACAGCATTTCATCATA 57.157 29.630 0.00 0.00 34.77 2.15
4468 4593 6.718388 ACAGCATTTCATCATATGTACGTTG 58.282 36.000 1.90 0.00 0.00 4.10
4535 4660 7.046292 TGTACTGTCATGTACACTTACTTGT 57.954 36.000 0.00 3.70 45.16 3.16
4536 4661 7.494211 TGTACTGTCATGTACACTTACTTGTT 58.506 34.615 0.00 0.00 45.16 2.83
4634 4760 2.224159 AGTGTGCCCTACCACCCTG 61.224 63.158 0.00 0.00 34.85 4.45
4900 5026 1.909302 ACACCACAGGCTAAGCAGTAT 59.091 47.619 0.00 0.00 0.00 2.12
5012 5138 2.108952 ACCTCAGGCTGGAGTTGATTTT 59.891 45.455 15.73 0.00 32.91 1.82
5630 5757 4.013267 AGCAAGTAACATCACTGCTTCT 57.987 40.909 0.00 0.00 32.56 2.85
5653 5780 3.944015 AGTTTTGCTGCTAGCTGGATTAG 59.056 43.478 21.46 8.29 42.97 1.73
5669 5796 7.344095 CTGGATTAGCCTTTGATTTGATTCT 57.656 36.000 0.00 0.00 37.63 2.40
5670 5797 7.338800 TGGATTAGCCTTTGATTTGATTCTC 57.661 36.000 0.00 0.00 37.63 2.87
5671 5798 6.891361 TGGATTAGCCTTTGATTTGATTCTCA 59.109 34.615 0.00 0.00 37.63 3.27
5696 5823 5.449725 GCCTTTGATTTGATTCTCAGGCTAC 60.450 44.000 0.00 0.00 37.98 3.58
5762 5889 3.441572 ACTGAAGTAAGCATGCATTGACC 59.558 43.478 21.98 5.34 0.00 4.02
5788 5915 8.306313 TGTAAATACTCTCACTGATGTACCAT 57.694 34.615 0.00 0.00 0.00 3.55
5829 5956 4.766891 CCAACTTGATTGTGTTGATAGGGT 59.233 41.667 7.33 0.00 44.29 4.34
5850 5977 6.271159 AGGGTTGGATATCTCTGAATAAGGTC 59.729 42.308 2.05 0.00 0.00 3.85
5945 6072 3.845781 ACTGAGGATATGACGCCATTT 57.154 42.857 0.00 0.00 34.31 2.32
6091 6218 7.800300 AGATATTGGAGGATAGGGTACTTTC 57.200 40.000 0.00 0.00 0.00 2.62
6214 6341 9.528018 TTTATTTAAGAAGCTTTCAGTTTGGTG 57.472 29.630 0.00 0.00 0.00 4.17
6215 6342 6.767524 TTTAAGAAGCTTTCAGTTTGGTGA 57.232 33.333 0.00 0.00 0.00 4.02
6216 6343 4.907879 AAGAAGCTTTCAGTTTGGTGAG 57.092 40.909 0.00 0.00 0.00 3.51
6217 6344 3.891049 AGAAGCTTTCAGTTTGGTGAGT 58.109 40.909 0.00 0.00 0.00 3.41
6218 6345 3.629398 AGAAGCTTTCAGTTTGGTGAGTG 59.371 43.478 0.00 0.00 0.00 3.51
6219 6346 2.301346 AGCTTTCAGTTTGGTGAGTGG 58.699 47.619 0.00 0.00 0.00 4.00
6220 6347 2.024414 GCTTTCAGTTTGGTGAGTGGT 58.976 47.619 0.00 0.00 0.00 4.16
6265 6392 9.223099 CAGTATGCAGATTGAATTATATCACCA 57.777 33.333 0.00 0.63 0.00 4.17
6267 6394 6.544038 TGCAGATTGAATTATATCACCACG 57.456 37.500 0.00 0.00 0.00 4.94
6448 6576 0.961019 TTTGCCCTTGCTGATGACAC 59.039 50.000 0.00 0.00 38.71 3.67
6455 6583 3.519579 CCTTGCTGATGACACAGACTAG 58.480 50.000 8.62 0.00 39.94 2.57
6477 6612 4.024048 AGACAACAACCAGCAAACTATTCG 60.024 41.667 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 151 4.134563 ACTAATTGTGTCAAGCCGTCTTT 58.865 39.130 0.00 0.00 0.00 2.52
163 165 6.348540 GCTCATTTTCTCACGGAACTAATTGT 60.349 38.462 0.00 0.00 33.13 2.71
184 186 4.099573 CGAGGATAAACTAAGGAAGGCTCA 59.900 45.833 0.00 0.00 0.00 4.26
219 221 2.334977 AGCCGTCCAATATACCATGGA 58.665 47.619 21.47 2.01 43.32 3.41
254 256 2.368875 AGGAAGGCTTCTTTTCTCACGA 59.631 45.455 25.25 0.00 0.00 4.35
303 305 4.393680 TCTTTTGCAATACCGATACACCAC 59.606 41.667 0.00 0.00 0.00 4.16
308 310 5.357257 TCCTCTCTTTTGCAATACCGATAC 58.643 41.667 0.00 0.00 0.00 2.24
312 314 5.154222 GTTTTCCTCTCTTTTGCAATACCG 58.846 41.667 0.00 0.00 0.00 4.02
470 472 3.055021 TCCAATCACCCGTATAAGTTGCA 60.055 43.478 0.00 0.00 0.00 4.08
479 482 0.325296 AGCTCCTCCAATCACCCGTA 60.325 55.000 0.00 0.00 0.00 4.02
511 514 0.663153 GTCATTATGTGGCCGGCTTC 59.337 55.000 28.56 19.51 0.00 3.86
593 601 4.741239 TCCCTCTCACTGGGGGCC 62.741 72.222 0.00 0.00 44.67 5.80
594 602 2.203549 CTTTCCCTCTCACTGGGGGC 62.204 65.000 0.00 0.00 44.67 5.80
595 603 0.547712 TCTTTCCCTCTCACTGGGGG 60.548 60.000 0.00 0.00 44.67 5.40
796 807 2.493973 CTGTCTGCTCTCCGCTCC 59.506 66.667 0.00 0.00 40.11 4.70
1145 1183 5.575957 CATGGATGCAAGTCACAATACTTC 58.424 41.667 0.00 0.00 37.61 3.01
1169 1207 3.947868 TGGAATTGAAAGCAGGAGAGAG 58.052 45.455 0.00 0.00 0.00 3.20
1170 1208 4.330250 CTTGGAATTGAAAGCAGGAGAGA 58.670 43.478 0.00 0.00 0.00 3.10
1171 1209 3.442977 CCTTGGAATTGAAAGCAGGAGAG 59.557 47.826 0.00 0.00 0.00 3.20
1172 1210 3.424703 CCTTGGAATTGAAAGCAGGAGA 58.575 45.455 0.00 0.00 0.00 3.71
1247 1285 4.539870 CTGATCACACAATTTGACACCAC 58.460 43.478 2.79 0.00 0.00 4.16
1486 1527 2.714991 TTGTTTGTGCTTGCCGGCA 61.715 52.632 29.03 29.03 40.15 5.69
1511 1552 2.172293 GGAAGAGCCTGACTGAATCCAT 59.828 50.000 0.00 0.00 0.00 3.41
1542 1583 0.036858 AGAGCTTGGTCGAGCCTTTC 60.037 55.000 12.85 4.91 43.74 2.62
1721 1762 2.598565 TCTGCAGAGAACTGGTACTGT 58.401 47.619 13.74 0.00 43.62 3.55
1772 1813 3.282374 AATGAACACCCTCCCCGGC 62.282 63.158 0.00 0.00 0.00 6.13
1904 1945 2.029290 GCACGAGTAACTTCCCTTCTCA 60.029 50.000 0.00 0.00 0.00 3.27
2000 2041 3.392616 AGTGAGGCATTAATACCTGGAGG 59.607 47.826 12.20 0.00 36.05 4.30
2012 2053 4.729868 AGTTTCAGGTTAAGTGAGGCATT 58.270 39.130 0.00 0.00 0.00 3.56
2061 2114 1.728971 CAGATGACACCAAACGCTCTC 59.271 52.381 0.00 0.00 0.00 3.20
2115 2187 8.567948 TGTCAAATCTAGGAAAAAGAACATGAC 58.432 33.333 0.00 0.00 36.02 3.06
2140 2212 6.539324 CAAAGTGCATTGCCATTAAGAAATG 58.461 36.000 6.12 0.00 41.90 2.32
2199 2271 1.577328 CTTTGTGGCGCGAGGAATGT 61.577 55.000 12.10 0.00 0.00 2.71
2249 2321 5.006844 TCAGTTCTAACGAAATCAAAACGCA 59.993 36.000 0.00 0.00 0.00 5.24
2250 2322 5.437263 TCAGTTCTAACGAAATCAAAACGC 58.563 37.500 0.00 0.00 0.00 4.84
2397 2508 2.550606 GCAGACAACATGGTAAAACCGA 59.449 45.455 0.00 0.00 42.58 4.69
2460 2575 2.856864 TCTATACTCTCTGGTGGGTCCA 59.143 50.000 0.00 0.00 45.01 4.02
2476 2591 9.548631 TTTTTCTTCCTCTCTTTCTCCTCTATA 57.451 33.333 0.00 0.00 0.00 1.31
2582 2697 1.256812 TGGCTCGATTCACTGAGTCA 58.743 50.000 2.79 0.00 44.03 3.41
2585 2700 2.266554 GACTTGGCTCGATTCACTGAG 58.733 52.381 0.00 0.00 35.30 3.35
2588 2703 0.108615 CCGACTTGGCTCGATTCACT 60.109 55.000 0.00 0.00 35.58 3.41
2614 2729 4.080582 TCCAAGATGGTGGTACTGGTATTG 60.081 45.833 0.00 0.00 39.03 1.90
2616 2731 3.711704 CTCCAAGATGGTGGTACTGGTAT 59.288 47.826 0.00 0.00 39.03 2.73
2716 2831 4.343231 TGCCCTCTGCTTTCATGAAATTA 58.657 39.130 20.76 11.83 42.00 1.40
2743 2858 7.665974 AGACCCTAGGTAGACAAATTCTTTTTG 59.334 37.037 8.29 0.00 35.25 2.44
2744 2859 7.756614 AGACCCTAGGTAGACAAATTCTTTTT 58.243 34.615 8.29 0.00 35.25 1.94
2820 2936 7.894708 AGTCATGAGAAGATATCAGTACCATG 58.105 38.462 5.32 10.98 0.00 3.66
3120 3236 0.625849 CCCTACAACCCCTTGCTCAT 59.374 55.000 0.00 0.00 0.00 2.90
3135 3251 1.440618 TGTGGTGAAGGCTTTCCCTA 58.559 50.000 16.08 0.00 45.62 3.53
3280 3396 3.574396 ACTCTAGCACAAAGTCTGCTGTA 59.426 43.478 3.15 0.00 44.85 2.74
3286 3402 5.988561 CAGAAAGAACTCTAGCACAAAGTCT 59.011 40.000 0.00 0.00 0.00 3.24
3313 3429 1.371558 GAGGGCTTCACAGTCGGTT 59.628 57.895 0.00 0.00 0.00 4.44
3420 3536 0.749091 TTCCAGCATTGCCTCATCCG 60.749 55.000 4.70 0.00 0.00 4.18
4102 4219 6.071560 TGTTATGGTAGTTCTTGACAGTCGAT 60.072 38.462 0.00 0.00 0.00 3.59
4119 4236 8.625786 AAGGTCGTAAATTTACTTGTTATGGT 57.374 30.769 22.57 0.91 0.00 3.55
4169 4286 4.759693 CGAGATACTGATCAGTTCTAGGCT 59.240 45.833 32.14 19.03 42.54 4.58
4185 4302 7.345192 ACGATGAATGCAAATTTACGAGATAC 58.655 34.615 0.00 0.00 0.00 2.24
4192 4312 6.150738 TGCAAACGATGAATGCAAATTTAC 57.849 33.333 0.00 0.00 46.23 2.01
4217 4337 7.615582 TTGTTTTGTCATGTAAATTTGCCAA 57.384 28.000 0.00 0.00 0.00 4.52
4298 4418 6.004574 TCGTCTGGTATGACTTCTATATGCT 58.995 40.000 0.00 0.00 35.00 3.79
4305 4425 6.380274 TCCTATTTTCGTCTGGTATGACTTCT 59.620 38.462 0.00 0.00 35.00 2.85
4306 4426 6.476053 GTCCTATTTTCGTCTGGTATGACTTC 59.524 42.308 0.00 0.00 35.00 3.01
4319 4439 9.838339 ATGATGAATTTAGAGTCCTATTTTCGT 57.162 29.630 0.00 0.00 0.00 3.85
4356 4477 4.742659 GCTGTACTACTAGAAAGCAGCATC 59.257 45.833 18.39 0.00 44.81 3.91
4385 4509 5.163814 GCTATGTTTGACTCATGGACTTCAC 60.164 44.000 0.00 0.00 0.00 3.18
4459 4584 2.367567 ACCTTGGAGACACAACGTACAT 59.632 45.455 0.00 0.00 42.67 2.29
4468 4593 2.224281 TGTGATCACACCTTGGAGACAC 60.224 50.000 24.56 0.00 45.40 3.67
5225 5351 4.398319 TCAATCTGAACCTGACCTTTTCC 58.602 43.478 0.00 0.00 0.00 3.13
5503 5629 1.142465 CCACAAGCTGATGAGGCCTAT 59.858 52.381 4.42 0.00 0.00 2.57
5572 5699 2.662866 CAATCATGGATTCTGGGCTGT 58.337 47.619 0.00 0.00 28.87 4.40
5630 5757 3.634397 ATCCAGCTAGCAGCAAAACTA 57.366 42.857 18.83 0.00 45.56 2.24
5663 5790 7.148120 GAGAATCAAATCAAAGGCTGAGAATCA 60.148 37.037 0.00 0.00 37.86 2.57
5664 5791 7.098074 AGAATCAAATCAAAGGCTGAGAATC 57.902 36.000 0.00 0.00 37.52 2.52
5665 5792 6.662234 TGAGAATCAAATCAAAGGCTGAGAAT 59.338 34.615 0.00 0.00 45.97 2.40
5666 5793 6.005823 TGAGAATCAAATCAAAGGCTGAGAA 58.994 36.000 0.00 0.00 45.97 2.87
5667 5794 5.563592 TGAGAATCAAATCAAAGGCTGAGA 58.436 37.500 0.00 0.00 45.97 3.27
5668 5795 5.892160 TGAGAATCAAATCAAAGGCTGAG 57.108 39.130 0.00 0.00 45.97 3.35
5696 5823 2.284263 TTAGTGTCATCAGCAGCTCG 57.716 50.000 0.00 0.00 0.00 5.03
5762 5889 7.772166 TGGTACATCAGTGAGAGTATTTACAG 58.228 38.462 10.38 0.00 0.00 2.74
5788 5915 6.174720 AGTTGGACTGTCATTCAGAGTTTA 57.825 37.500 10.38 0.00 46.27 2.01
5829 5956 6.556495 AGCAGACCTTATTCAGAGATATCCAA 59.444 38.462 0.00 0.00 0.00 3.53
5850 5977 8.133627 CCAAGAACCAAAATATATCTTGAGCAG 58.866 37.037 13.71 0.00 46.16 4.24
6054 6181 9.621239 ATCCTCCAATATCTAGAACTAATCCAA 57.379 33.333 0.00 0.00 0.00 3.53
6140 6267 3.541996 TGCAAAGAGACAGTTCTGTGA 57.458 42.857 10.29 0.00 34.88 3.58
6265 6392 4.103365 TCATGTTCAAAGTTGTTTGCGT 57.897 36.364 0.00 0.00 42.55 5.24
6267 6394 7.115378 CCTTATCTCATGTTCAAAGTTGTTTGC 59.885 37.037 0.00 0.00 42.55 3.68
6448 6576 3.111853 TGCTGGTTGTTGTCTAGTCTG 57.888 47.619 0.00 0.00 0.00 3.51
6455 6583 4.219033 CGAATAGTTTGCTGGTTGTTGTC 58.781 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.