Multiple sequence alignment - TraesCS5B01G349900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G349900 chr5B 100.000 2673 0 0 1 2673 530975155 530972483 0.000000e+00 4937.0
1 TraesCS5B01G349900 chr5B 87.600 1758 135 38 669 2411 530609063 530610752 0.000000e+00 1962.0
2 TraesCS5B01G349900 chr5B 89.952 836 70 13 690 1516 530613201 530614031 0.000000e+00 1066.0
3 TraesCS5B01G349900 chr5B 87.668 819 72 19 577 1386 530334070 530334868 0.000000e+00 926.0
4 TraesCS5B01G349900 chr5B 96.267 375 13 1 2300 2673 530610753 530611127 4.890000e-172 614.0
5 TraesCS5B01G349900 chr5B 75.934 241 33 16 2165 2382 530614760 530614998 1.690000e-17 100.0
6 TraesCS5B01G349900 chr5B 90.741 54 3 2 59 111 462737743 462737795 1.330000e-08 71.3
7 TraesCS5B01G349900 chr5B 88.235 51 6 0 2327 2377 530972748 530972698 7.990000e-06 62.1
8 TraesCS5B01G349900 chr5B 88.235 51 6 0 2408 2458 530972829 530972779 7.990000e-06 62.1
9 TraesCS5B01G349900 chr5D 87.655 2098 190 45 340 2405 436824828 436822768 0.000000e+00 2375.0
10 TraesCS5B01G349900 chr5D 91.276 768 47 15 769 1527 436578190 436578946 0.000000e+00 1029.0
11 TraesCS5B01G349900 chr5D 87.846 831 73 15 558 1386 436349051 436349855 0.000000e+00 950.0
12 TraesCS5B01G349900 chr5D 86.187 695 69 20 705 1387 440375806 440375127 0.000000e+00 726.0
13 TraesCS5B01G349900 chr5D 75.697 251 34 17 2156 2382 436579644 436579891 1.690000e-17 100.0
14 TraesCS5B01G349900 chr5D 82.883 111 14 4 69 178 19742294 19742400 7.880000e-16 95.3
15 TraesCS5B01G349900 chr5A 88.360 1177 88 22 515 1667 552078993 552077842 0.000000e+00 1369.0
16 TraesCS5B01G349900 chr5A 88.744 844 62 19 690 1511 551041100 551041932 0.000000e+00 1002.0
17 TraesCS5B01G349900 chr5A 89.431 738 45 20 669 1386 550801665 550802389 0.000000e+00 900.0
18 TraesCS5B01G349900 chr5A 86.003 693 65 25 705 1387 556534669 556533999 0.000000e+00 713.0
19 TraesCS5B01G349900 chr5A 86.290 248 25 6 2399 2639 552077134 552076889 7.340000e-66 261.0
20 TraesCS5B01G349900 chr5A 75.540 278 36 18 2137 2382 551042469 551042746 1.010000e-19 108.0
21 TraesCS5B01G349900 chr2D 95.238 63 3 0 1 63 7076837 7076775 1.690000e-17 100.0
22 TraesCS5B01G349900 chr2B 93.939 66 2 2 3 66 675505701 675505766 6.090000e-17 99.0
23 TraesCS5B01G349900 chr4D 90.476 63 6 0 1 63 486556760 486556822 1.710000e-12 84.2
24 TraesCS5B01G349900 chr7B 90.741 54 3 2 59 111 38919208 38919260 1.330000e-08 71.3
25 TraesCS5B01G349900 chr4B 90.741 54 3 2 59 111 53758617 53758669 1.330000e-08 71.3
26 TraesCS5B01G349900 chr4B 90.566 53 5 0 59 111 545063365 545063417 1.330000e-08 71.3
27 TraesCS5B01G349900 chr3B 90.741 54 3 2 59 111 198027519 198027467 1.330000e-08 71.3
28 TraesCS5B01G349900 chr3B 90.741 54 3 2 59 111 656762460 656762408 1.330000e-08 71.3
29 TraesCS5B01G349900 chr1B 90.741 54 3 2 59 111 315688461 315688513 1.330000e-08 71.3
30 TraesCS5B01G349900 chr1B 90.741 54 3 2 59 111 315898998 315899050 1.330000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G349900 chr5B 530972483 530975155 2672 True 1687.066667 4937 92.156667 1 2673 3 chr5B.!!$R1 2672
1 TraesCS5B01G349900 chr5B 530609063 530614998 5935 False 935.500000 1962 87.438250 669 2673 4 chr5B.!!$F3 2004
2 TraesCS5B01G349900 chr5B 530334070 530334868 798 False 926.000000 926 87.668000 577 1386 1 chr5B.!!$F2 809
3 TraesCS5B01G349900 chr5D 436822768 436824828 2060 True 2375.000000 2375 87.655000 340 2405 1 chr5D.!!$R1 2065
4 TraesCS5B01G349900 chr5D 436349051 436349855 804 False 950.000000 950 87.846000 558 1386 1 chr5D.!!$F2 828
5 TraesCS5B01G349900 chr5D 440375127 440375806 679 True 726.000000 726 86.187000 705 1387 1 chr5D.!!$R2 682
6 TraesCS5B01G349900 chr5D 436578190 436579891 1701 False 564.500000 1029 83.486500 769 2382 2 chr5D.!!$F3 1613
7 TraesCS5B01G349900 chr5A 550801665 550802389 724 False 900.000000 900 89.431000 669 1386 1 chr5A.!!$F1 717
8 TraesCS5B01G349900 chr5A 552076889 552078993 2104 True 815.000000 1369 87.325000 515 2639 2 chr5A.!!$R2 2124
9 TraesCS5B01G349900 chr5A 556533999 556534669 670 True 713.000000 713 86.003000 705 1387 1 chr5A.!!$R1 682
10 TraesCS5B01G349900 chr5A 551041100 551042746 1646 False 555.000000 1002 82.142000 690 2382 2 chr5A.!!$F2 1692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.187851 TCCCTTTACCCCCGCAAAAA 59.812 50.0 0.0 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 6001 0.168128 GACGAAATTGCTGAACGGGG 59.832 55.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.834911 TGTGGCCTCTCGACTGTA 57.165 55.556 3.32 0.00 0.00 2.74
18 19 3.045518 TGTGGCCTCTCGACTGTAA 57.954 52.632 3.32 0.00 0.00 2.41
19 20 0.601558 TGTGGCCTCTCGACTGTAAC 59.398 55.000 3.32 0.00 0.00 2.50
20 21 0.889306 GTGGCCTCTCGACTGTAACT 59.111 55.000 3.32 0.00 0.00 2.24
21 22 1.135344 GTGGCCTCTCGACTGTAACTC 60.135 57.143 3.32 0.00 0.00 3.01
22 23 1.271982 TGGCCTCTCGACTGTAACTCT 60.272 52.381 3.32 0.00 0.00 3.24
23 24 2.026542 TGGCCTCTCGACTGTAACTCTA 60.027 50.000 3.32 0.00 0.00 2.43
24 25 3.215975 GGCCTCTCGACTGTAACTCTAT 58.784 50.000 0.00 0.00 0.00 1.98
25 26 3.003897 GGCCTCTCGACTGTAACTCTATG 59.996 52.174 0.00 0.00 0.00 2.23
26 27 3.628487 GCCTCTCGACTGTAACTCTATGT 59.372 47.826 0.00 0.00 0.00 2.29
27 28 4.260866 GCCTCTCGACTGTAACTCTATGTC 60.261 50.000 0.00 0.00 0.00 3.06
28 29 5.120399 CCTCTCGACTGTAACTCTATGTCT 58.880 45.833 0.00 0.00 0.00 3.41
29 30 6.282167 CCTCTCGACTGTAACTCTATGTCTA 58.718 44.000 0.00 0.00 0.00 2.59
30 31 6.932400 CCTCTCGACTGTAACTCTATGTCTAT 59.068 42.308 0.00 0.00 0.00 1.98
31 32 7.095397 CCTCTCGACTGTAACTCTATGTCTATG 60.095 44.444 0.00 0.00 0.00 2.23
32 33 6.203145 TCTCGACTGTAACTCTATGTCTATGC 59.797 42.308 0.00 0.00 0.00 3.14
33 34 5.820947 TCGACTGTAACTCTATGTCTATGCA 59.179 40.000 0.00 0.00 0.00 3.96
34 35 6.317893 TCGACTGTAACTCTATGTCTATGCAA 59.682 38.462 0.00 0.00 0.00 4.08
35 36 7.013369 TCGACTGTAACTCTATGTCTATGCAAT 59.987 37.037 0.00 0.00 0.00 3.56
36 37 8.290325 CGACTGTAACTCTATGTCTATGCAATA 58.710 37.037 0.00 0.00 0.00 1.90
37 38 9.967346 GACTGTAACTCTATGTCTATGCAATAA 57.033 33.333 0.00 0.00 0.00 1.40
43 44 8.894768 ACTCTATGTCTATGCAATAAAACTCC 57.105 34.615 0.00 0.00 0.00 3.85
44 45 7.934120 ACTCTATGTCTATGCAATAAAACTCCC 59.066 37.037 0.00 0.00 0.00 4.30
45 46 8.034313 TCTATGTCTATGCAATAAAACTCCCT 57.966 34.615 0.00 0.00 0.00 4.20
46 47 8.494433 TCTATGTCTATGCAATAAAACTCCCTT 58.506 33.333 0.00 0.00 0.00 3.95
47 48 7.961326 ATGTCTATGCAATAAAACTCCCTTT 57.039 32.000 0.00 0.00 0.00 3.11
49 50 8.276252 TGTCTATGCAATAAAACTCCCTTTAC 57.724 34.615 0.00 0.00 0.00 2.01
50 51 7.338449 TGTCTATGCAATAAAACTCCCTTTACC 59.662 37.037 0.00 0.00 0.00 2.85
51 52 5.932619 ATGCAATAAAACTCCCTTTACCC 57.067 39.130 0.00 0.00 0.00 3.69
52 53 4.090819 TGCAATAAAACTCCCTTTACCCC 58.909 43.478 0.00 0.00 0.00 4.95
53 54 3.449737 GCAATAAAACTCCCTTTACCCCC 59.550 47.826 0.00 0.00 0.00 5.40
54 55 3.657398 ATAAAACTCCCTTTACCCCCG 57.343 47.619 0.00 0.00 0.00 5.73
55 56 0.251474 AAAACTCCCTTTACCCCCGC 60.251 55.000 0.00 0.00 0.00 6.13
56 57 1.428718 AAACTCCCTTTACCCCCGCA 61.429 55.000 0.00 0.00 0.00 5.69
57 58 1.428718 AACTCCCTTTACCCCCGCAA 61.429 55.000 0.00 0.00 0.00 4.85
58 59 1.381076 CTCCCTTTACCCCCGCAAA 59.619 57.895 0.00 0.00 0.00 3.68
59 60 0.251430 CTCCCTTTACCCCCGCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
60 61 0.187851 TCCCTTTACCCCCGCAAAAA 59.812 50.000 0.00 0.00 0.00 1.94
87 88 9.777575 AACGAAATTACGGTTTAAAAGATATGG 57.222 29.630 0.00 0.00 37.61 2.74
88 89 9.165035 ACGAAATTACGGTTTAAAAGATATGGA 57.835 29.630 0.00 0.00 37.61 3.41
124 125 9.874205 ACAATATTTATTTTTGGATGGACTGTG 57.126 29.630 0.00 0.00 0.00 3.66
125 126 9.316730 CAATATTTATTTTTGGATGGACTGTGG 57.683 33.333 0.00 0.00 0.00 4.17
126 127 8.837099 ATATTTATTTTTGGATGGACTGTGGA 57.163 30.769 0.00 0.00 0.00 4.02
127 128 7.738437 ATTTATTTTTGGATGGACTGTGGAT 57.262 32.000 0.00 0.00 0.00 3.41
128 129 7.552050 TTTATTTTTGGATGGACTGTGGATT 57.448 32.000 0.00 0.00 0.00 3.01
129 130 4.870123 TTTTTGGATGGACTGTGGATTG 57.130 40.909 0.00 0.00 0.00 2.67
130 131 3.805066 TTTGGATGGACTGTGGATTGA 57.195 42.857 0.00 0.00 0.00 2.57
131 132 4.320546 TTTGGATGGACTGTGGATTGAT 57.679 40.909 0.00 0.00 0.00 2.57
132 133 4.320546 TTGGATGGACTGTGGATTGATT 57.679 40.909 0.00 0.00 0.00 2.57
133 134 5.449297 TTGGATGGACTGTGGATTGATTA 57.551 39.130 0.00 0.00 0.00 1.75
134 135 5.449297 TGGATGGACTGTGGATTGATTAA 57.551 39.130 0.00 0.00 0.00 1.40
135 136 5.192927 TGGATGGACTGTGGATTGATTAAC 58.807 41.667 0.00 0.00 0.00 2.01
136 137 5.044919 TGGATGGACTGTGGATTGATTAACT 60.045 40.000 0.00 0.00 0.00 2.24
137 138 5.297776 GGATGGACTGTGGATTGATTAACTG 59.702 44.000 0.00 0.00 0.00 3.16
138 139 5.497464 TGGACTGTGGATTGATTAACTGA 57.503 39.130 0.00 0.00 0.00 3.41
139 140 5.245531 TGGACTGTGGATTGATTAACTGAC 58.754 41.667 0.00 0.00 0.00 3.51
140 141 5.221823 TGGACTGTGGATTGATTAACTGACA 60.222 40.000 0.00 0.00 0.00 3.58
141 142 5.705441 GGACTGTGGATTGATTAACTGACAA 59.295 40.000 0.00 0.00 0.00 3.18
142 143 6.206634 GGACTGTGGATTGATTAACTGACAAA 59.793 38.462 0.00 0.00 0.00 2.83
143 144 7.094205 GGACTGTGGATTGATTAACTGACAAAT 60.094 37.037 0.00 0.00 0.00 2.32
144 145 7.820648 ACTGTGGATTGATTAACTGACAAATC 58.179 34.615 0.00 0.00 33.57 2.17
145 146 7.667219 ACTGTGGATTGATTAACTGACAAATCT 59.333 33.333 0.00 0.00 34.00 2.40
146 147 7.819644 TGTGGATTGATTAACTGACAAATCTG 58.180 34.615 0.00 0.00 34.00 2.90
147 148 7.665145 TGTGGATTGATTAACTGACAAATCTGA 59.335 33.333 0.00 0.00 34.00 3.27
148 149 8.680903 GTGGATTGATTAACTGACAAATCTGAT 58.319 33.333 0.00 0.00 34.00 2.90
149 150 8.680001 TGGATTGATTAACTGACAAATCTGATG 58.320 33.333 0.00 0.00 34.00 3.07
150 151 8.133627 GGATTGATTAACTGACAAATCTGATGG 58.866 37.037 0.00 0.00 34.00 3.51
151 152 8.585471 ATTGATTAACTGACAAATCTGATGGT 57.415 30.769 0.00 0.00 34.00 3.55
152 153 8.408043 TTGATTAACTGACAAATCTGATGGTT 57.592 30.769 0.00 0.00 34.00 3.67
153 154 8.408043 TGATTAACTGACAAATCTGATGGTTT 57.592 30.769 0.00 0.00 34.00 3.27
154 155 8.859090 TGATTAACTGACAAATCTGATGGTTTT 58.141 29.630 0.00 0.00 34.00 2.43
155 156 9.346725 GATTAACTGACAAATCTGATGGTTTTC 57.653 33.333 0.00 0.00 0.00 2.29
156 157 6.966534 AACTGACAAATCTGATGGTTTTCT 57.033 33.333 0.00 0.00 0.00 2.52
157 158 6.323203 ACTGACAAATCTGATGGTTTTCTG 57.677 37.500 0.00 0.00 0.00 3.02
158 159 5.829924 ACTGACAAATCTGATGGTTTTCTGT 59.170 36.000 0.00 0.00 0.00 3.41
159 160 6.322201 ACTGACAAATCTGATGGTTTTCTGTT 59.678 34.615 0.00 0.00 0.00 3.16
160 161 7.502226 ACTGACAAATCTGATGGTTTTCTGTTA 59.498 33.333 0.00 0.00 0.00 2.41
161 162 8.231692 TGACAAATCTGATGGTTTTCTGTTAA 57.768 30.769 0.00 0.00 0.00 2.01
162 163 8.690884 TGACAAATCTGATGGTTTTCTGTTAAA 58.309 29.630 0.00 0.00 0.00 1.52
163 164 9.528018 GACAAATCTGATGGTTTTCTGTTAAAA 57.472 29.630 0.00 0.00 0.00 1.52
164 165 9.313118 ACAAATCTGATGGTTTTCTGTTAAAAC 57.687 29.630 5.07 5.07 38.90 2.43
165 166 9.533253 CAAATCTGATGGTTTTCTGTTAAAACT 57.467 29.630 11.78 0.00 39.41 2.66
196 197 9.815936 AAACAATTCGTAAATAAGAACGTTAGG 57.184 29.630 0.00 0.00 39.99 2.69
197 198 8.538409 ACAATTCGTAAATAAGAACGTTAGGT 57.462 30.769 0.00 0.00 39.99 3.08
198 199 8.992073 ACAATTCGTAAATAAGAACGTTAGGTT 58.008 29.630 0.00 0.00 42.96 3.50
212 213 8.490355 AGAACGTTAGGTTAATTACTTCAAACG 58.510 33.333 0.00 13.43 39.50 3.60
213 214 7.713764 ACGTTAGGTTAATTACTTCAAACGT 57.286 32.000 14.31 14.31 0.00 3.99
214 215 7.787084 ACGTTAGGTTAATTACTTCAAACGTC 58.213 34.615 14.31 0.00 0.00 4.34
215 216 7.437862 ACGTTAGGTTAATTACTTCAAACGTCA 59.562 33.333 14.31 0.00 0.00 4.35
216 217 8.274939 CGTTAGGTTAATTACTTCAAACGTCAA 58.725 33.333 0.00 0.00 0.00 3.18
217 218 9.590088 GTTAGGTTAATTACTTCAAACGTCAAG 57.410 33.333 0.00 0.00 0.00 3.02
218 219 7.797038 AGGTTAATTACTTCAAACGTCAAGT 57.203 32.000 11.10 11.10 36.75 3.16
219 220 8.217131 AGGTTAATTACTTCAAACGTCAAGTT 57.783 30.769 11.47 0.00 46.76 2.66
265 266 8.567285 AAAGGTTCATCTATGAGTTAAGTTGG 57.433 34.615 0.00 0.00 38.19 3.77
266 267 7.259088 AGGTTCATCTATGAGTTAAGTTGGT 57.741 36.000 0.00 0.00 38.19 3.67
267 268 7.331791 AGGTTCATCTATGAGTTAAGTTGGTC 58.668 38.462 0.00 0.00 38.19 4.02
268 269 7.181125 AGGTTCATCTATGAGTTAAGTTGGTCT 59.819 37.037 0.00 0.00 38.19 3.85
269 270 7.278868 GGTTCATCTATGAGTTAAGTTGGTCTG 59.721 40.741 0.00 0.00 38.19 3.51
270 271 6.341316 TCATCTATGAGTTAAGTTGGTCTGC 58.659 40.000 0.00 0.00 32.11 4.26
271 272 4.744570 TCTATGAGTTAAGTTGGTCTGCG 58.255 43.478 0.00 0.00 0.00 5.18
272 273 2.163818 TGAGTTAAGTTGGTCTGCGG 57.836 50.000 0.00 0.00 0.00 5.69
273 274 1.270625 TGAGTTAAGTTGGTCTGCGGG 60.271 52.381 0.00 0.00 0.00 6.13
274 275 0.763035 AGTTAAGTTGGTCTGCGGGT 59.237 50.000 0.00 0.00 0.00 5.28
275 276 1.142262 AGTTAAGTTGGTCTGCGGGTT 59.858 47.619 0.00 0.00 0.00 4.11
276 277 2.369532 AGTTAAGTTGGTCTGCGGGTTA 59.630 45.455 0.00 0.00 0.00 2.85
277 278 3.140623 GTTAAGTTGGTCTGCGGGTTAA 58.859 45.455 0.00 0.00 0.00 2.01
278 279 2.579410 AAGTTGGTCTGCGGGTTAAT 57.421 45.000 0.00 0.00 0.00 1.40
279 280 2.579410 AGTTGGTCTGCGGGTTAATT 57.421 45.000 0.00 0.00 0.00 1.40
280 281 2.433436 AGTTGGTCTGCGGGTTAATTC 58.567 47.619 0.00 0.00 0.00 2.17
281 282 2.156098 GTTGGTCTGCGGGTTAATTCA 58.844 47.619 0.00 0.00 0.00 2.57
282 283 1.816074 TGGTCTGCGGGTTAATTCAC 58.184 50.000 0.00 0.00 0.00 3.18
283 284 1.072489 TGGTCTGCGGGTTAATTCACA 59.928 47.619 0.00 0.00 0.00 3.58
284 285 2.290641 TGGTCTGCGGGTTAATTCACAT 60.291 45.455 0.00 0.00 0.00 3.21
285 286 3.055021 TGGTCTGCGGGTTAATTCACATA 60.055 43.478 0.00 0.00 0.00 2.29
286 287 3.942748 GGTCTGCGGGTTAATTCACATAA 59.057 43.478 0.00 0.00 0.00 1.90
287 288 4.396790 GGTCTGCGGGTTAATTCACATAAA 59.603 41.667 0.00 0.00 0.00 1.40
288 289 5.106078 GGTCTGCGGGTTAATTCACATAAAA 60.106 40.000 0.00 0.00 0.00 1.52
289 290 5.798434 GTCTGCGGGTTAATTCACATAAAAC 59.202 40.000 0.00 0.00 0.00 2.43
290 291 5.473846 TCTGCGGGTTAATTCACATAAAACA 59.526 36.000 0.00 0.00 0.00 2.83
291 292 5.704888 TGCGGGTTAATTCACATAAAACAG 58.295 37.500 0.00 0.00 0.00 3.16
292 293 5.473846 TGCGGGTTAATTCACATAAAACAGA 59.526 36.000 0.00 0.00 0.00 3.41
293 294 6.027749 GCGGGTTAATTCACATAAAACAGAG 58.972 40.000 0.00 0.00 0.00 3.35
294 295 6.349033 GCGGGTTAATTCACATAAAACAGAGT 60.349 38.462 0.00 0.00 0.00 3.24
295 296 7.148373 GCGGGTTAATTCACATAAAACAGAGTA 60.148 37.037 0.00 0.00 0.00 2.59
296 297 8.388103 CGGGTTAATTCACATAAAACAGAGTAG 58.612 37.037 0.00 0.00 0.00 2.57
297 298 9.227777 GGGTTAATTCACATAAAACAGAGTAGT 57.772 33.333 0.00 0.00 0.00 2.73
323 324 4.364415 TTTAAAAGGGCGACATACATGC 57.636 40.909 0.00 0.00 0.00 4.06
324 325 1.832883 AAAAGGGCGACATACATGCA 58.167 45.000 0.00 0.00 0.00 3.96
325 326 1.832883 AAAGGGCGACATACATGCAA 58.167 45.000 0.00 0.00 0.00 4.08
326 327 1.832883 AAGGGCGACATACATGCAAA 58.167 45.000 0.00 0.00 0.00 3.68
327 328 1.832883 AGGGCGACATACATGCAAAA 58.167 45.000 0.00 0.00 0.00 2.44
328 329 2.166829 AGGGCGACATACATGCAAAAA 58.833 42.857 0.00 0.00 0.00 1.94
329 330 2.094752 AGGGCGACATACATGCAAAAAC 60.095 45.455 0.00 0.00 0.00 2.43
330 331 2.352225 GGGCGACATACATGCAAAAACA 60.352 45.455 0.00 0.00 0.00 2.83
331 332 3.312828 GGCGACATACATGCAAAAACAA 58.687 40.909 0.00 0.00 0.00 2.83
332 333 3.925913 GGCGACATACATGCAAAAACAAT 59.074 39.130 0.00 0.00 0.00 2.71
333 334 5.098893 GGCGACATACATGCAAAAACAATA 58.901 37.500 0.00 0.00 0.00 1.90
334 335 5.574830 GGCGACATACATGCAAAAACAATAA 59.425 36.000 0.00 0.00 0.00 1.40
335 336 6.255453 GGCGACATACATGCAAAAACAATAAT 59.745 34.615 0.00 0.00 0.00 1.28
336 337 7.201513 GGCGACATACATGCAAAAACAATAATT 60.202 33.333 0.00 0.00 0.00 1.40
337 338 8.167985 GCGACATACATGCAAAAACAATAATTT 58.832 29.630 0.00 0.00 0.00 1.82
382 387 8.071122 TGTAAACAATAAAACTTTGCATCTGC 57.929 30.769 0.00 0.00 42.50 4.26
386 391 6.620678 ACAATAAAACTTTGCATCTGCGTAT 58.379 32.000 0.00 0.00 45.83 3.06
391 396 2.674852 ACTTTGCATCTGCGTATCACAG 59.325 45.455 0.00 0.00 45.83 3.66
392 397 2.385013 TTGCATCTGCGTATCACAGT 57.615 45.000 0.00 0.00 45.83 3.55
400 405 2.973224 CTGCGTATCACAGTTTTGCAAC 59.027 45.455 0.00 0.00 0.00 4.17
414 420 5.279256 AGTTTTGCAACCAAACACTAGTGTT 60.279 36.000 31.07 31.07 43.53 3.32
415 421 7.064029 AGTTTTGCAACCAAACACTAGTGTTC 61.064 38.462 34.98 23.48 42.15 3.18
416 422 9.345158 AGTTTTGCAACCAAACACTAGTGTTCA 62.345 37.037 34.98 25.42 42.15 3.18
425 439 4.506246 ACACTAGTGTTCAGCCAGGCTG 62.506 54.545 33.09 33.09 45.22 4.85
433 447 2.371864 AGCCAGGCTGGAGAGGAT 59.628 61.111 37.07 5.00 40.96 3.24
436 450 2.372890 CCAGGCTGGAGAGGATGCA 61.373 63.158 29.96 0.00 40.96 3.96
438 452 2.071262 AGGCTGGAGAGGATGCAGG 61.071 63.158 0.00 0.00 46.85 4.85
463 477 6.128227 GCAAATAAACCATGTGCAAATCATGT 60.128 34.615 13.06 0.00 45.90 3.21
464 478 7.573469 GCAAATAAACCATGTGCAAATCATGTT 60.573 33.333 13.06 6.13 45.90 2.71
465 479 7.982761 AATAAACCATGTGCAAATCATGTTT 57.017 28.000 13.06 12.19 40.43 2.83
506 520 1.335132 TTAGCCCGGCTTACTCAGGG 61.335 60.000 19.35 0.00 46.44 4.45
509 523 2.125106 CCGGCTTACTCAGGGCAC 60.125 66.667 0.00 0.00 0.00 5.01
580 594 4.698304 TGAAAGAAACACCCCGATATCAAC 59.302 41.667 3.12 0.00 0.00 3.18
585 599 3.475566 ACACCCCGATATCAACTGATG 57.524 47.619 3.12 0.00 36.05 3.07
596 610 6.038603 CGATATCAACTGATGGTGGAAAACAT 59.961 38.462 3.12 0.00 36.05 2.71
661 676 0.248134 CCTTCGAACTAGTCTCGCCG 60.248 60.000 17.28 12.14 36.25 6.46
665 680 4.493747 AACTAGTCTCGCCGCGGC 62.494 66.667 39.82 39.82 37.85 6.53
700 715 2.046285 CCACCGGCCAGAATTCCAC 61.046 63.158 0.00 0.00 0.00 4.02
701 716 1.002134 CACCGGCCAGAATTCCACT 60.002 57.895 0.00 0.00 0.00 4.00
1036 1090 1.000955 AGCTACCACAAAGACAGGTCG 59.999 52.381 0.00 0.00 36.87 4.79
1068 1127 2.494073 GGAGAAGAAAGGAGAAGCGAGA 59.506 50.000 0.00 0.00 0.00 4.04
1516 5708 7.811236 TCGAACTAGTTTATCGTTGAAATCTGT 59.189 33.333 10.02 0.00 37.79 3.41
1529 5757 4.237724 TGAAATCTGTTAGCGTCTGTCAG 58.762 43.478 0.00 0.00 0.00 3.51
1537 5765 1.070786 GCGTCTGTCAGTTCCCCAA 59.929 57.895 0.00 0.00 0.00 4.12
1544 5772 2.304180 CTGTCAGTTCCCCAATCTCTGT 59.696 50.000 0.00 0.00 0.00 3.41
1587 5816 1.142778 CGGTTGTTGGTTTTGGTGCG 61.143 55.000 0.00 0.00 0.00 5.34
1590 5819 0.459237 TTGTTGGTTTTGGTGCGCTG 60.459 50.000 9.73 0.00 0.00 5.18
1601 5830 0.598065 GGTGCGCTGAATTTGAACCT 59.402 50.000 9.73 0.00 0.00 3.50
1607 5836 3.343617 CGCTGAATTTGAACCTTCCCTA 58.656 45.455 0.00 0.00 0.00 3.53
1624 5853 5.223449 TCCCTACAATTTGTTCGTCTCTT 57.777 39.130 7.45 0.00 0.00 2.85
1625 5854 6.349243 TCCCTACAATTTGTTCGTCTCTTA 57.651 37.500 7.45 0.00 0.00 2.10
1628 5857 6.128363 CCCTACAATTTGTTCGTCTCTTAACC 60.128 42.308 7.45 0.00 0.00 2.85
1636 5865 4.682860 TGTTCGTCTCTTAACCGTGAAATC 59.317 41.667 0.00 0.00 0.00 2.17
1638 5867 3.256383 TCGTCTCTTAACCGTGAAATCCA 59.744 43.478 0.00 0.00 0.00 3.41
1644 5873 0.183971 AACCGTGAAATCCACACCCA 59.816 50.000 0.00 0.00 45.98 4.51
1650 5879 2.029918 GTGAAATCCACACCCAAAGCTC 60.030 50.000 0.00 0.00 45.03 4.09
1653 5882 3.737559 AATCCACACCCAAAGCTCATA 57.262 42.857 0.00 0.00 0.00 2.15
1654 5883 3.737559 ATCCACACCCAAAGCTCATAA 57.262 42.857 0.00 0.00 0.00 1.90
1655 5884 3.737559 TCCACACCCAAAGCTCATAAT 57.262 42.857 0.00 0.00 0.00 1.28
1670 5899 7.823745 AGCTCATAATAATTCCAAATCCGTT 57.176 32.000 0.00 0.00 0.00 4.44
1692 5922 1.146041 TAATAGCTGCAGGCACCGG 59.854 57.895 17.12 0.00 44.79 5.28
1755 5985 4.208686 GGCGGCAGAGGTACGAGG 62.209 72.222 3.07 0.00 0.00 4.63
1760 5990 2.363795 CAGAGGTACGAGGCCCCA 60.364 66.667 0.00 0.00 0.00 4.96
1767 5999 0.614812 GTACGAGGCCCCAAAACCTA 59.385 55.000 0.00 0.00 36.05 3.08
1769 6001 0.255033 ACGAGGCCCCAAAACCTATC 59.745 55.000 0.00 0.00 36.05 2.08
1817 6049 1.404035 GAGGTGCGTTGTGTTTTCCTT 59.596 47.619 0.00 0.00 0.00 3.36
1819 6051 0.920664 GTGCGTTGTGTTTTCCTTGC 59.079 50.000 0.00 0.00 0.00 4.01
1825 6057 1.040339 TGTGTTTTCCTTGCCGCCTT 61.040 50.000 0.00 0.00 0.00 4.35
1833 6065 0.318955 CCTTGCCGCCTTGTCTTTTG 60.319 55.000 0.00 0.00 0.00 2.44
1845 6077 2.331809 GTCTTTTGACGGCATGGTTC 57.668 50.000 0.00 0.00 39.89 3.62
1848 6080 0.958091 TTTTGACGGCATGGTTCTGG 59.042 50.000 0.00 0.00 0.00 3.86
1850 6082 0.321564 TTGACGGCATGGTTCTGGAG 60.322 55.000 0.00 0.00 0.00 3.86
1851 6083 2.045926 ACGGCATGGTTCTGGAGC 60.046 61.111 0.00 0.00 0.00 4.70
1852 6084 2.046023 CGGCATGGTTCTGGAGCA 60.046 61.111 0.00 0.00 40.58 4.26
1853 6085 2.110967 CGGCATGGTTCTGGAGCAG 61.111 63.158 0.00 0.00 39.48 4.24
1854 6086 1.751927 GGCATGGTTCTGGAGCAGG 60.752 63.158 0.00 0.00 39.48 4.85
1855 6087 1.001641 GCATGGTTCTGGAGCAGGT 60.002 57.895 1.50 0.00 39.57 4.00
1856 6088 0.610232 GCATGGTTCTGGAGCAGGTT 60.610 55.000 1.50 0.00 39.57 3.50
1857 6089 1.457346 CATGGTTCTGGAGCAGGTTC 58.543 55.000 0.00 0.00 39.48 3.62
1858 6090 1.067295 ATGGTTCTGGAGCAGGTTCA 58.933 50.000 0.00 0.00 39.48 3.18
1859 6091 1.067295 TGGTTCTGGAGCAGGTTCAT 58.933 50.000 0.00 0.00 31.51 2.57
1860 6092 1.425066 TGGTTCTGGAGCAGGTTCATT 59.575 47.619 0.00 0.00 31.51 2.57
1861 6093 2.642311 TGGTTCTGGAGCAGGTTCATTA 59.358 45.455 0.00 0.00 31.51 1.90
1936 6206 2.328099 CGTGCTGGAGCCTTGGAAC 61.328 63.158 0.00 0.00 41.18 3.62
1947 6242 0.040204 CCTTGGAACCTGCTGGGATT 59.960 55.000 14.82 0.00 38.76 3.01
1954 6249 3.057548 CTGCTGGGATTGCGTGCA 61.058 61.111 0.00 0.00 0.00 4.57
1955 6250 3.047718 CTGCTGGGATTGCGTGCAG 62.048 63.158 0.00 0.00 43.71 4.41
1956 6251 3.058160 GCTGGGATTGCGTGCAGT 61.058 61.111 0.00 0.00 0.00 4.40
1957 6252 2.872557 CTGGGATTGCGTGCAGTG 59.127 61.111 0.00 0.00 0.00 3.66
1960 6303 2.177531 GGATTGCGTGCAGTGCTG 59.822 61.111 17.60 10.07 0.00 4.41
1969 6312 2.894387 GCAGTGCTGGAGCGATCC 60.894 66.667 14.17 14.17 45.83 3.36
1972 6315 2.107953 GTGCTGGAGCGATCCCTC 59.892 66.667 18.75 9.33 45.83 4.30
1985 6328 0.753262 ATCCCTCGGTACACATCTGC 59.247 55.000 0.00 0.00 0.00 4.26
2013 6363 1.609072 GCCTCTGTTGTCTTCCCAAAC 59.391 52.381 0.00 0.00 0.00 2.93
2029 6379 7.452501 TCTTCCCAAACTTTCTCATGATCAATT 59.547 33.333 0.00 0.00 0.00 2.32
2044 6397 2.811410 TCAATTCTGCTTCCATGGCTT 58.189 42.857 6.96 0.00 0.00 4.35
2045 6398 3.966979 TCAATTCTGCTTCCATGGCTTA 58.033 40.909 6.96 0.00 0.00 3.09
2046 6399 4.343231 TCAATTCTGCTTCCATGGCTTAA 58.657 39.130 6.96 0.00 0.00 1.85
2047 6400 4.400251 TCAATTCTGCTTCCATGGCTTAAG 59.600 41.667 6.96 7.11 0.00 1.85
2207 6676 5.888161 GTGGATTTTGACTACCTGATCCAAT 59.112 40.000 4.59 0.00 43.16 3.16
2232 6701 4.638421 TCTTGAATTACAATAACCAGCGGG 59.362 41.667 0.00 0.00 37.88 6.13
2281 6763 6.719370 CAGATCAGATTAGTAGCTAGGGTTCT 59.281 42.308 0.00 0.00 0.00 3.01
2284 6766 6.432581 TCAGATTAGTAGCTAGGGTTCTTGA 58.567 40.000 0.00 0.00 0.00 3.02
2285 6767 6.895756 TCAGATTAGTAGCTAGGGTTCTTGAA 59.104 38.462 0.00 0.00 0.00 2.69
2287 6769 8.207545 CAGATTAGTAGCTAGGGTTCTTGAATT 58.792 37.037 0.00 0.00 0.00 2.17
2289 6771 4.518249 AGTAGCTAGGGTTCTTGAATTGC 58.482 43.478 0.00 0.00 0.00 3.56
2290 6772 3.439857 AGCTAGGGTTCTTGAATTGCA 57.560 42.857 0.00 0.00 0.00 4.08
2292 6774 4.347607 AGCTAGGGTTCTTGAATTGCAAT 58.652 39.130 5.99 5.99 35.59 3.56
2293 6775 5.509498 AGCTAGGGTTCTTGAATTGCAATA 58.491 37.500 13.39 0.00 35.59 1.90
2294 6776 5.951747 AGCTAGGGTTCTTGAATTGCAATAA 59.048 36.000 13.39 3.27 35.59 1.40
2295 6777 6.036470 GCTAGGGTTCTTGAATTGCAATAAC 58.964 40.000 13.39 12.44 40.73 1.89
2341 6832 5.050490 GTGCTTCATGTTAGGATGTACGAT 58.950 41.667 0.00 0.00 0.00 3.73
2363 6854 2.638480 ACTGGCTACTGCTTGTTTGA 57.362 45.000 0.00 0.00 39.59 2.69
2368 6859 2.162408 GGCTACTGCTTGTTTGATGGAC 59.838 50.000 0.00 0.00 39.59 4.02
2382 6876 1.490490 GATGGACTGGATTGGGTAGCA 59.510 52.381 0.00 0.00 0.00 3.49
2388 6882 3.958798 GACTGGATTGGGTAGCAGTAGTA 59.041 47.826 0.00 0.00 0.00 1.82
2390 6884 4.969359 ACTGGATTGGGTAGCAGTAGTAAT 59.031 41.667 0.00 0.00 0.00 1.89
2402 6896 8.228464 GGTAGCAGTAGTAATTTTCAGTTGTTC 58.772 37.037 0.00 0.00 0.00 3.18
2417 6985 5.036117 AGTTGTTCACTGTGTTAGGATGT 57.964 39.130 7.79 0.00 32.83 3.06
2435 7003 4.277672 GGATGTACGATGAACTGGCTACTA 59.722 45.833 0.00 0.00 0.00 1.82
2437 7005 4.011698 TGTACGATGAACTGGCTACTACA 58.988 43.478 0.00 0.00 0.00 2.74
2446 7014 2.233922 ACTGGCTACTACATGTTCGCTT 59.766 45.455 2.30 0.00 0.00 4.68
2449 7022 3.259064 GGCTACTACATGTTCGCTTGAA 58.741 45.455 2.30 0.00 0.00 2.69
2455 7028 4.943705 ACTACATGTTCGCTTGAATGGATT 59.056 37.500 2.30 0.00 33.37 3.01
2456 7029 4.100707 ACATGTTCGCTTGAATGGATTG 57.899 40.909 0.00 0.00 33.37 2.67
2458 7031 2.789213 TGTTCGCTTGAATGGATTGGA 58.211 42.857 0.00 0.00 33.37 3.53
2472 7045 7.396907 TGAATGGATTGGATTGTAGTGAATGTT 59.603 33.333 0.00 0.00 0.00 2.71
2480 7053 5.755861 GGATTGTAGTGAATGTTAGGCTCTC 59.244 44.000 0.00 0.00 0.00 3.20
2485 7058 5.690464 AGTGAATGTTAGGCTCTCTTGAT 57.310 39.130 0.00 0.00 0.00 2.57
2492 7065 6.798427 TGTTAGGCTCTCTTGATCTACATT 57.202 37.500 0.00 0.00 0.00 2.71
2509 7082 9.606631 GATCTACATTTGTGTATTCTTCCTTCT 57.393 33.333 0.00 0.00 0.00 2.85
2511 7084 6.259550 ACATTTGTGTATTCTTCCTTCTGC 57.740 37.500 0.00 0.00 0.00 4.26
2512 7085 5.183904 ACATTTGTGTATTCTTCCTTCTGCC 59.816 40.000 0.00 0.00 0.00 4.85
2514 7087 2.026262 TGTGTATTCTTCCTTCTGCCCC 60.026 50.000 0.00 0.00 0.00 5.80
2531 7105 1.418334 CCCCAAACCAACCATGTTCA 58.582 50.000 0.00 0.00 0.00 3.18
2542 7116 3.247006 ACCATGTTCACGTCAGGATAC 57.753 47.619 0.00 0.00 0.00 2.24
2548 7122 2.750301 TCACGTCAGGATACGATTCG 57.250 50.000 4.14 4.14 45.68 3.34
2586 7160 7.681939 TTTTGGTATCTTAGCAGTCGAATTT 57.318 32.000 0.00 0.00 37.49 1.82
2588 7162 8.780846 TTTGGTATCTTAGCAGTCGAATTTTA 57.219 30.769 0.00 0.00 37.49 1.52
2590 7164 8.193250 TGGTATCTTAGCAGTCGAATTTTAAC 57.807 34.615 0.00 0.00 0.00 2.01
2623 7197 3.625938 GCAGAAGCAAAGTTCAGTTCAG 58.374 45.455 0.00 0.00 41.58 3.02
2629 7203 3.005155 AGCAAAGTTCAGTTCAGAATGCC 59.995 43.478 0.00 0.00 33.63 4.40
2631 7205 4.500375 GCAAAGTTCAGTTCAGAATGCCTT 60.500 41.667 0.00 0.00 34.76 4.35
2632 7206 4.843220 AAGTTCAGTTCAGAATGCCTTG 57.157 40.909 0.00 0.00 34.76 3.61
2639 7213 3.068590 AGTTCAGAATGCCTTGTGGTTTG 59.931 43.478 0.00 0.00 34.76 2.93
2640 7214 1.340889 TCAGAATGCCTTGTGGTTTGC 59.659 47.619 0.00 0.00 34.76 3.68
2641 7215 1.068895 CAGAATGCCTTGTGGTTTGCA 59.931 47.619 0.00 0.00 38.23 4.08
2642 7216 1.069049 AGAATGCCTTGTGGTTTGCAC 59.931 47.619 0.00 0.00 36.41 4.57
2643 7217 0.106521 AATGCCTTGTGGTTTGCACC 59.893 50.000 0.00 0.00 44.56 5.01
2644 7218 0.760189 ATGCCTTGTGGTTTGCACCT 60.760 50.000 0.00 0.00 44.61 4.00
2645 7219 1.363807 GCCTTGTGGTTTGCACCTC 59.636 57.895 0.00 0.00 44.61 3.85
2646 7220 1.109323 GCCTTGTGGTTTGCACCTCT 61.109 55.000 0.00 0.00 44.61 3.69
2647 7221 0.670162 CCTTGTGGTTTGCACCTCTG 59.330 55.000 0.00 0.00 44.61 3.35
2648 7222 0.031178 CTTGTGGTTTGCACCTCTGC 59.969 55.000 0.00 0.00 44.61 4.26
2649 7223 0.395586 TTGTGGTTTGCACCTCTGCT 60.396 50.000 0.00 0.00 44.61 4.24
2650 7224 1.102809 TGTGGTTTGCACCTCTGCTG 61.103 55.000 0.00 0.00 44.61 4.41
2651 7225 2.195567 TGGTTTGCACCTCTGCTGC 61.196 57.895 0.00 0.00 44.61 5.25
2652 7226 1.900498 GGTTTGCACCTCTGCTGCT 60.900 57.895 0.00 0.00 44.57 4.24
2653 7227 1.458639 GGTTTGCACCTCTGCTGCTT 61.459 55.000 0.00 0.00 44.57 3.91
2654 7228 1.238439 GTTTGCACCTCTGCTGCTTA 58.762 50.000 0.00 0.00 44.57 3.09
2655 7229 1.068954 GTTTGCACCTCTGCTGCTTAC 60.069 52.381 0.00 0.00 44.57 2.34
2656 7230 0.397941 TTGCACCTCTGCTGCTTACT 59.602 50.000 0.00 0.00 44.57 2.24
2657 7231 0.321034 TGCACCTCTGCTGCTTACTG 60.321 55.000 0.00 0.00 44.57 2.74
2658 7232 1.642952 GCACCTCTGCTGCTTACTGC 61.643 60.000 0.00 0.00 40.63 4.40
2659 7233 1.023513 CACCTCTGCTGCTTACTGCC 61.024 60.000 0.00 0.00 42.00 4.85
2660 7234 1.197430 ACCTCTGCTGCTTACTGCCT 61.197 55.000 0.00 0.00 42.00 4.75
2661 7235 0.035630 CCTCTGCTGCTTACTGCCTT 60.036 55.000 0.00 0.00 42.00 4.35
2662 7236 1.367659 CTCTGCTGCTTACTGCCTTC 58.632 55.000 0.00 0.00 42.00 3.46
2663 7237 0.979665 TCTGCTGCTTACTGCCTTCT 59.020 50.000 0.00 0.00 42.00 2.85
2664 7238 1.066573 TCTGCTGCTTACTGCCTTCTC 60.067 52.381 0.00 0.00 42.00 2.87
2665 7239 0.686789 TGCTGCTTACTGCCTTCTCA 59.313 50.000 0.00 0.00 42.00 3.27
2666 7240 1.072173 TGCTGCTTACTGCCTTCTCAA 59.928 47.619 0.00 0.00 42.00 3.02
2667 7241 2.154462 GCTGCTTACTGCCTTCTCAAA 58.846 47.619 0.00 0.00 42.00 2.69
2668 7242 2.554032 GCTGCTTACTGCCTTCTCAAAA 59.446 45.455 0.00 0.00 42.00 2.44
2669 7243 3.365767 GCTGCTTACTGCCTTCTCAAAAG 60.366 47.826 0.00 0.00 42.00 2.27
2670 7244 3.817647 CTGCTTACTGCCTTCTCAAAAGT 59.182 43.478 0.00 0.00 42.00 2.66
2671 7245 4.207165 TGCTTACTGCCTTCTCAAAAGTT 58.793 39.130 0.00 0.00 42.00 2.66
2672 7246 4.036734 TGCTTACTGCCTTCTCAAAAGTTG 59.963 41.667 0.00 0.00 42.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.601558 GTTACAGTCGAGAGGCCACA 59.398 55.000 5.01 0.00 35.23 4.17
1 2 0.889306 AGTTACAGTCGAGAGGCCAC 59.111 55.000 5.01 0.00 35.23 5.01
2 3 1.174783 GAGTTACAGTCGAGAGGCCA 58.825 55.000 5.01 0.00 35.23 5.36
3 4 1.465794 AGAGTTACAGTCGAGAGGCC 58.534 55.000 0.00 0.00 35.23 5.19
4 5 3.628487 ACATAGAGTTACAGTCGAGAGGC 59.372 47.826 0.00 0.00 0.00 4.70
5 6 5.120399 AGACATAGAGTTACAGTCGAGAGG 58.880 45.833 0.00 0.00 34.56 3.69
6 7 7.570507 GCATAGACATAGAGTTACAGTCGAGAG 60.571 44.444 0.00 0.00 34.56 3.20
7 8 6.203145 GCATAGACATAGAGTTACAGTCGAGA 59.797 42.308 0.00 0.00 34.56 4.04
8 9 6.017852 TGCATAGACATAGAGTTACAGTCGAG 60.018 42.308 0.00 0.00 34.56 4.04
9 10 5.820947 TGCATAGACATAGAGTTACAGTCGA 59.179 40.000 0.00 0.00 34.56 4.20
10 11 6.061231 TGCATAGACATAGAGTTACAGTCG 57.939 41.667 0.00 0.00 34.56 4.18
11 12 9.967346 TTATTGCATAGACATAGAGTTACAGTC 57.033 33.333 0.00 0.00 0.00 3.51
17 18 9.331282 GGAGTTTTATTGCATAGACATAGAGTT 57.669 33.333 0.00 0.00 0.00 3.01
18 19 7.934120 GGGAGTTTTATTGCATAGACATAGAGT 59.066 37.037 0.00 0.00 0.00 3.24
19 20 8.153550 AGGGAGTTTTATTGCATAGACATAGAG 58.846 37.037 0.00 0.00 0.00 2.43
20 21 8.034313 AGGGAGTTTTATTGCATAGACATAGA 57.966 34.615 0.00 0.00 0.00 1.98
21 22 8.682936 AAGGGAGTTTTATTGCATAGACATAG 57.317 34.615 0.00 0.00 0.00 2.23
23 24 7.961326 AAAGGGAGTTTTATTGCATAGACAT 57.039 32.000 0.00 0.00 0.00 3.06
24 25 7.338449 GGTAAAGGGAGTTTTATTGCATAGACA 59.662 37.037 0.00 0.00 0.00 3.41
25 26 7.201794 GGGTAAAGGGAGTTTTATTGCATAGAC 60.202 40.741 0.00 0.00 0.00 2.59
26 27 6.831868 GGGTAAAGGGAGTTTTATTGCATAGA 59.168 38.462 0.00 0.00 0.00 1.98
27 28 6.040504 GGGGTAAAGGGAGTTTTATTGCATAG 59.959 42.308 0.00 0.00 0.00 2.23
28 29 5.894964 GGGGTAAAGGGAGTTTTATTGCATA 59.105 40.000 0.00 0.00 0.00 3.14
29 30 4.714802 GGGGTAAAGGGAGTTTTATTGCAT 59.285 41.667 0.00 0.00 0.00 3.96
30 31 4.090819 GGGGTAAAGGGAGTTTTATTGCA 58.909 43.478 0.00 0.00 0.00 4.08
31 32 3.449737 GGGGGTAAAGGGAGTTTTATTGC 59.550 47.826 0.00 0.00 0.00 3.56
32 33 3.697542 CGGGGGTAAAGGGAGTTTTATTG 59.302 47.826 0.00 0.00 0.00 1.90
33 34 3.878924 GCGGGGGTAAAGGGAGTTTTATT 60.879 47.826 0.00 0.00 0.00 1.40
34 35 2.357465 GCGGGGGTAAAGGGAGTTTTAT 60.357 50.000 0.00 0.00 0.00 1.40
35 36 1.004628 GCGGGGGTAAAGGGAGTTTTA 59.995 52.381 0.00 0.00 0.00 1.52
36 37 0.251474 GCGGGGGTAAAGGGAGTTTT 60.251 55.000 0.00 0.00 0.00 2.43
37 38 1.381463 GCGGGGGTAAAGGGAGTTT 59.619 57.895 0.00 0.00 0.00 2.66
38 39 1.428718 TTGCGGGGGTAAAGGGAGTT 61.429 55.000 0.00 0.00 0.00 3.01
39 40 1.428718 TTTGCGGGGGTAAAGGGAGT 61.429 55.000 0.00 0.00 0.00 3.85
40 41 0.251430 TTTTGCGGGGGTAAAGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
41 42 0.187851 TTTTTGCGGGGGTAAAGGGA 59.812 50.000 0.00 0.00 0.00 4.20
42 43 2.748018 TTTTTGCGGGGGTAAAGGG 58.252 52.632 0.00 0.00 0.00 3.95
61 62 9.777575 CCATATCTTTTAAACCGTAATTTCGTT 57.222 29.630 3.73 0.00 0.00 3.85
62 63 9.165035 TCCATATCTTTTAAACCGTAATTTCGT 57.835 29.630 3.73 0.00 0.00 3.85
98 99 9.874205 CACAGTCCATCCAAAAATAAATATTGT 57.126 29.630 0.00 0.00 0.00 2.71
99 100 9.316730 CCACAGTCCATCCAAAAATAAATATTG 57.683 33.333 0.00 0.00 0.00 1.90
100 101 9.265862 TCCACAGTCCATCCAAAAATAAATATT 57.734 29.630 0.00 0.00 0.00 1.28
101 102 8.837099 TCCACAGTCCATCCAAAAATAAATAT 57.163 30.769 0.00 0.00 0.00 1.28
102 103 8.837099 ATCCACAGTCCATCCAAAAATAAATA 57.163 30.769 0.00 0.00 0.00 1.40
103 104 7.738437 ATCCACAGTCCATCCAAAAATAAAT 57.262 32.000 0.00 0.00 0.00 1.40
104 105 7.234371 TCAATCCACAGTCCATCCAAAAATAAA 59.766 33.333 0.00 0.00 0.00 1.40
105 106 6.723515 TCAATCCACAGTCCATCCAAAAATAA 59.276 34.615 0.00 0.00 0.00 1.40
106 107 6.252233 TCAATCCACAGTCCATCCAAAAATA 58.748 36.000 0.00 0.00 0.00 1.40
107 108 5.085920 TCAATCCACAGTCCATCCAAAAAT 58.914 37.500 0.00 0.00 0.00 1.82
108 109 4.478203 TCAATCCACAGTCCATCCAAAAA 58.522 39.130 0.00 0.00 0.00 1.94
109 110 4.111255 TCAATCCACAGTCCATCCAAAA 57.889 40.909 0.00 0.00 0.00 2.44
110 111 3.805066 TCAATCCACAGTCCATCCAAA 57.195 42.857 0.00 0.00 0.00 3.28
111 112 4.320546 AATCAATCCACAGTCCATCCAA 57.679 40.909 0.00 0.00 0.00 3.53
112 113 5.044919 AGTTAATCAATCCACAGTCCATCCA 60.045 40.000 0.00 0.00 0.00 3.41
113 114 5.297776 CAGTTAATCAATCCACAGTCCATCC 59.702 44.000 0.00 0.00 0.00 3.51
114 115 6.037610 GTCAGTTAATCAATCCACAGTCCATC 59.962 42.308 0.00 0.00 0.00 3.51
115 116 5.882557 GTCAGTTAATCAATCCACAGTCCAT 59.117 40.000 0.00 0.00 0.00 3.41
116 117 5.221823 TGTCAGTTAATCAATCCACAGTCCA 60.222 40.000 0.00 0.00 0.00 4.02
117 118 5.245531 TGTCAGTTAATCAATCCACAGTCC 58.754 41.667 0.00 0.00 0.00 3.85
118 119 6.801539 TTGTCAGTTAATCAATCCACAGTC 57.198 37.500 0.00 0.00 0.00 3.51
119 120 7.667219 AGATTTGTCAGTTAATCAATCCACAGT 59.333 33.333 0.00 0.00 34.06 3.55
120 121 7.966753 CAGATTTGTCAGTTAATCAATCCACAG 59.033 37.037 0.00 0.00 34.06 3.66
121 122 7.665145 TCAGATTTGTCAGTTAATCAATCCACA 59.335 33.333 0.00 0.00 34.06 4.17
122 123 8.044060 TCAGATTTGTCAGTTAATCAATCCAC 57.956 34.615 0.00 0.00 34.06 4.02
123 124 8.680001 CATCAGATTTGTCAGTTAATCAATCCA 58.320 33.333 0.00 0.00 34.06 3.41
124 125 8.133627 CCATCAGATTTGTCAGTTAATCAATCC 58.866 37.037 0.00 0.00 34.06 3.01
125 126 8.680903 ACCATCAGATTTGTCAGTTAATCAATC 58.319 33.333 0.00 0.00 34.06 2.67
126 127 8.585471 ACCATCAGATTTGTCAGTTAATCAAT 57.415 30.769 0.00 0.00 34.06 2.57
127 128 8.408043 AACCATCAGATTTGTCAGTTAATCAA 57.592 30.769 0.00 0.00 34.06 2.57
128 129 8.408043 AAACCATCAGATTTGTCAGTTAATCA 57.592 30.769 0.00 0.00 34.06 2.57
129 130 9.346725 GAAAACCATCAGATTTGTCAGTTAATC 57.653 33.333 0.00 0.00 0.00 1.75
130 131 9.082313 AGAAAACCATCAGATTTGTCAGTTAAT 57.918 29.630 0.00 0.00 0.00 1.40
131 132 8.352201 CAGAAAACCATCAGATTTGTCAGTTAA 58.648 33.333 0.00 0.00 0.00 2.01
132 133 7.502226 ACAGAAAACCATCAGATTTGTCAGTTA 59.498 33.333 0.00 0.00 0.00 2.24
133 134 6.322201 ACAGAAAACCATCAGATTTGTCAGTT 59.678 34.615 0.00 0.00 0.00 3.16
134 135 5.829924 ACAGAAAACCATCAGATTTGTCAGT 59.170 36.000 0.00 0.00 0.00 3.41
135 136 6.323203 ACAGAAAACCATCAGATTTGTCAG 57.677 37.500 0.00 0.00 0.00 3.51
136 137 6.713762 AACAGAAAACCATCAGATTTGTCA 57.286 33.333 0.00 0.00 0.00 3.58
137 138 9.528018 TTTTAACAGAAAACCATCAGATTTGTC 57.472 29.630 0.00 0.00 0.00 3.18
138 139 9.313118 GTTTTAACAGAAAACCATCAGATTTGT 57.687 29.630 2.20 0.00 34.88 2.83
139 140 9.533253 AGTTTTAACAGAAAACCATCAGATTTG 57.467 29.630 8.82 0.00 40.10 2.32
170 171 9.815936 CCTAACGTTCTTATTTACGAATTGTTT 57.184 29.630 2.82 0.00 40.03 2.83
171 172 8.992073 ACCTAACGTTCTTATTTACGAATTGTT 58.008 29.630 2.82 0.00 40.03 2.83
172 173 8.538409 ACCTAACGTTCTTATTTACGAATTGT 57.462 30.769 2.82 0.00 40.03 2.71
186 187 8.490355 CGTTTGAAGTAATTAACCTAACGTTCT 58.510 33.333 2.82 0.00 35.79 3.01
187 188 8.275632 ACGTTTGAAGTAATTAACCTAACGTTC 58.724 33.333 19.09 0.00 35.79 3.95
188 189 8.141835 ACGTTTGAAGTAATTAACCTAACGTT 57.858 30.769 19.09 5.88 38.57 3.99
189 190 7.437862 TGACGTTTGAAGTAATTAACCTAACGT 59.562 33.333 21.98 21.98 0.00 3.99
190 191 7.786114 TGACGTTTGAAGTAATTAACCTAACG 58.214 34.615 18.29 18.29 0.00 3.18
191 192 9.590088 CTTGACGTTTGAAGTAATTAACCTAAC 57.410 33.333 0.00 0.00 0.00 2.34
192 193 9.328845 ACTTGACGTTTGAAGTAATTAACCTAA 57.671 29.630 6.74 0.00 30.47 2.69
193 194 8.891671 ACTTGACGTTTGAAGTAATTAACCTA 57.108 30.769 6.74 0.00 30.47 3.08
194 195 7.797038 ACTTGACGTTTGAAGTAATTAACCT 57.203 32.000 6.74 0.00 30.47 3.50
195 196 8.845942 AAACTTGACGTTTGAAGTAATTAACC 57.154 30.769 8.46 0.00 43.90 2.85
239 240 9.014297 CCAACTTAACTCATAGATGAACCTTTT 57.986 33.333 0.00 0.00 36.18 2.27
240 241 8.164070 ACCAACTTAACTCATAGATGAACCTTT 58.836 33.333 0.00 0.00 36.18 3.11
241 242 7.690256 ACCAACTTAACTCATAGATGAACCTT 58.310 34.615 0.00 0.00 36.18 3.50
242 243 7.181125 AGACCAACTTAACTCATAGATGAACCT 59.819 37.037 0.00 0.00 36.18 3.50
243 244 7.278868 CAGACCAACTTAACTCATAGATGAACC 59.721 40.741 0.00 0.00 36.18 3.62
244 245 7.201565 GCAGACCAACTTAACTCATAGATGAAC 60.202 40.741 0.00 0.00 36.18 3.18
245 246 6.818644 GCAGACCAACTTAACTCATAGATGAA 59.181 38.462 0.00 0.00 36.18 2.57
246 247 6.341316 GCAGACCAACTTAACTCATAGATGA 58.659 40.000 0.00 0.00 35.16 2.92
247 248 5.233050 CGCAGACCAACTTAACTCATAGATG 59.767 44.000 0.00 0.00 0.00 2.90
248 249 5.352284 CGCAGACCAACTTAACTCATAGAT 58.648 41.667 0.00 0.00 0.00 1.98
249 250 4.381612 CCGCAGACCAACTTAACTCATAGA 60.382 45.833 0.00 0.00 0.00 1.98
250 251 3.865745 CCGCAGACCAACTTAACTCATAG 59.134 47.826 0.00 0.00 0.00 2.23
251 252 3.369052 CCCGCAGACCAACTTAACTCATA 60.369 47.826 0.00 0.00 0.00 2.15
252 253 2.615493 CCCGCAGACCAACTTAACTCAT 60.615 50.000 0.00 0.00 0.00 2.90
253 254 1.270625 CCCGCAGACCAACTTAACTCA 60.271 52.381 0.00 0.00 0.00 3.41
254 255 1.270678 ACCCGCAGACCAACTTAACTC 60.271 52.381 0.00 0.00 0.00 3.01
255 256 0.763035 ACCCGCAGACCAACTTAACT 59.237 50.000 0.00 0.00 0.00 2.24
256 257 1.601166 AACCCGCAGACCAACTTAAC 58.399 50.000 0.00 0.00 0.00 2.01
257 258 3.488778 TTAACCCGCAGACCAACTTAA 57.511 42.857 0.00 0.00 0.00 1.85
258 259 3.706600 ATTAACCCGCAGACCAACTTA 57.293 42.857 0.00 0.00 0.00 2.24
259 260 2.579410 ATTAACCCGCAGACCAACTT 57.421 45.000 0.00 0.00 0.00 2.66
260 261 2.224670 TGAATTAACCCGCAGACCAACT 60.225 45.455 0.00 0.00 0.00 3.16
261 262 2.095415 GTGAATTAACCCGCAGACCAAC 60.095 50.000 0.00 0.00 0.00 3.77
262 263 2.156098 GTGAATTAACCCGCAGACCAA 58.844 47.619 0.00 0.00 0.00 3.67
263 264 1.072489 TGTGAATTAACCCGCAGACCA 59.928 47.619 0.00 0.00 0.00 4.02
264 265 1.816074 TGTGAATTAACCCGCAGACC 58.184 50.000 0.00 0.00 0.00 3.85
265 266 5.554822 TTTATGTGAATTAACCCGCAGAC 57.445 39.130 0.00 0.00 0.00 3.51
266 267 5.473846 TGTTTTATGTGAATTAACCCGCAGA 59.526 36.000 0.00 0.00 0.00 4.26
267 268 5.704888 TGTTTTATGTGAATTAACCCGCAG 58.295 37.500 0.00 0.00 0.00 5.18
268 269 5.473846 TCTGTTTTATGTGAATTAACCCGCA 59.526 36.000 0.00 0.00 0.00 5.69
269 270 5.945155 TCTGTTTTATGTGAATTAACCCGC 58.055 37.500 0.00 0.00 0.00 6.13
270 271 7.141100 ACTCTGTTTTATGTGAATTAACCCG 57.859 36.000 0.00 0.00 0.00 5.28
271 272 9.227777 ACTACTCTGTTTTATGTGAATTAACCC 57.772 33.333 0.00 0.00 0.00 4.11
300 301 5.164954 GCATGTATGTCGCCCTTTTAAAAA 58.835 37.500 1.66 0.00 0.00 1.94
301 302 4.218635 TGCATGTATGTCGCCCTTTTAAAA 59.781 37.500 0.00 0.00 0.00 1.52
302 303 3.759086 TGCATGTATGTCGCCCTTTTAAA 59.241 39.130 0.00 0.00 0.00 1.52
303 304 3.348119 TGCATGTATGTCGCCCTTTTAA 58.652 40.909 0.00 0.00 0.00 1.52
304 305 2.992593 TGCATGTATGTCGCCCTTTTA 58.007 42.857 0.00 0.00 0.00 1.52
305 306 1.832883 TGCATGTATGTCGCCCTTTT 58.167 45.000 0.00 0.00 0.00 2.27
306 307 1.832883 TTGCATGTATGTCGCCCTTT 58.167 45.000 0.00 0.00 0.00 3.11
307 308 1.832883 TTTGCATGTATGTCGCCCTT 58.167 45.000 0.00 0.00 0.00 3.95
308 309 1.832883 TTTTGCATGTATGTCGCCCT 58.167 45.000 0.00 0.00 0.00 5.19
309 310 2.258755 GTTTTTGCATGTATGTCGCCC 58.741 47.619 0.00 0.00 0.00 6.13
310 311 2.940147 TGTTTTTGCATGTATGTCGCC 58.060 42.857 0.00 0.00 0.00 5.54
311 312 6.624710 TTATTGTTTTTGCATGTATGTCGC 57.375 33.333 0.00 0.00 0.00 5.19
361 362 5.288804 ACGCAGATGCAAAGTTTTATTGTT 58.711 33.333 5.55 0.00 42.21 2.83
366 371 5.180304 TGTGATACGCAGATGCAAAGTTTTA 59.820 36.000 5.55 0.00 42.21 1.52
369 374 3.073678 TGTGATACGCAGATGCAAAGTT 58.926 40.909 5.55 0.00 42.21 2.66
382 387 3.617540 TGGTTGCAAAACTGTGATACG 57.382 42.857 0.00 0.00 32.01 3.06
386 391 3.006323 AGTGTTTGGTTGCAAAACTGTGA 59.994 39.130 0.00 0.00 38.17 3.58
391 396 4.490743 ACACTAGTGTTTGGTTGCAAAAC 58.509 39.130 22.95 2.76 41.83 2.43
392 397 4.792521 ACACTAGTGTTTGGTTGCAAAA 57.207 36.364 22.95 0.00 41.83 2.44
416 422 2.071262 CATCCTCTCCAGCCTGGCT 61.071 63.158 17.22 17.22 40.77 4.75
417 423 2.509916 CATCCTCTCCAGCCTGGC 59.490 66.667 11.65 11.65 37.47 4.85
418 424 2.326773 CTGCATCCTCTCCAGCCTGG 62.327 65.000 3.69 3.69 39.43 4.45
419 425 1.146485 CTGCATCCTCTCCAGCCTG 59.854 63.158 0.00 0.00 0.00 4.85
420 426 2.071262 CCTGCATCCTCTCCAGCCT 61.071 63.158 0.00 0.00 0.00 4.58
421 427 2.509916 CCTGCATCCTCTCCAGCC 59.490 66.667 0.00 0.00 0.00 4.85
422 428 2.203181 GCCTGCATCCTCTCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
425 439 2.645838 TATTTGCCTGCATCCTCTCC 57.354 50.000 0.00 0.00 0.00 3.71
433 447 2.612471 GCACATGGTTTATTTGCCTGCA 60.612 45.455 0.00 0.00 36.66 4.41
436 450 4.348863 TTTGCACATGGTTTATTTGCCT 57.651 36.364 0.00 0.00 40.87 4.75
438 452 5.859521 TGATTTGCACATGGTTTATTTGC 57.140 34.783 0.00 0.00 41.71 3.68
470 484 5.749109 CGGGCTAAGTGAATACAAGTAGAAG 59.251 44.000 0.00 0.00 0.00 2.85
486 500 0.105039 CCTGAGTAAGCCGGGCTAAG 59.895 60.000 24.16 14.14 38.25 2.18
506 520 5.342259 GGATTTTGAACACTTTGTATCGTGC 59.658 40.000 0.00 0.00 34.58 5.34
509 523 6.033831 GCATGGATTTTGAACACTTTGTATCG 59.966 38.462 0.00 0.00 0.00 2.92
580 594 4.870123 TTTCCATGTTTTCCACCATCAG 57.130 40.909 0.00 0.00 0.00 2.90
585 599 3.192633 AGCGTATTTCCATGTTTTCCACC 59.807 43.478 0.00 0.00 0.00 4.61
617 631 1.002134 CTCGGGTTGTTGCCAGGAT 60.002 57.895 0.00 0.00 0.00 3.24
632 646 1.694639 AGTTCGAAGGCGTAAACTCG 58.305 50.000 0.00 0.00 31.41 4.18
743 763 1.303091 CGGACGGGTTTTGGATGGAC 61.303 60.000 0.00 0.00 0.00 4.02
827 857 4.200092 GGAGGTGTGTTTCTTTTCTGAGT 58.800 43.478 0.00 0.00 0.00 3.41
886 918 1.663074 GAGATCGATGGCACGGAGC 60.663 63.158 0.54 3.62 44.65 4.70
1391 5569 1.476891 GACACTCTAATCTGGCGGTGA 59.523 52.381 0.00 0.00 0.00 4.02
1516 5708 0.606604 GGGGAACTGACAGACGCTAA 59.393 55.000 10.08 0.00 0.00 3.09
1529 5757 2.834549 TGAGAGACAGAGATTGGGGAAC 59.165 50.000 0.00 0.00 0.00 3.62
1537 5765 7.678837 AGACAGAAAATTTGAGAGACAGAGAT 58.321 34.615 0.00 0.00 0.00 2.75
1544 5772 7.095060 CCGATTTGAGACAGAAAATTTGAGAGA 60.095 37.037 0.00 0.00 0.00 3.10
1587 5816 4.079253 TGTAGGGAAGGTTCAAATTCAGC 58.921 43.478 0.00 0.00 0.00 4.26
1590 5819 7.441836 ACAAATTGTAGGGAAGGTTCAAATTC 58.558 34.615 0.00 0.00 0.00 2.17
1601 5830 5.223449 AGAGACGAACAAATTGTAGGGAA 57.777 39.130 0.00 0.00 0.00 3.97
1607 5836 4.812626 ACGGTTAAGAGACGAACAAATTGT 59.187 37.500 0.00 0.00 0.00 2.71
1636 5865 6.461509 GGAATTATTATGAGCTTTGGGTGTGG 60.462 42.308 0.00 0.00 0.00 4.17
1638 5867 6.194235 TGGAATTATTATGAGCTTTGGGTGT 58.806 36.000 0.00 0.00 0.00 4.16
1644 5873 8.237811 ACGGATTTGGAATTATTATGAGCTTT 57.762 30.769 0.00 0.00 0.00 3.51
1654 5883 8.784043 GCTATTACTCAACGGATTTGGAATTAT 58.216 33.333 0.00 0.00 35.69 1.28
1655 5884 7.990886 AGCTATTACTCAACGGATTTGGAATTA 59.009 33.333 0.00 0.00 35.69 1.40
1670 5899 1.134401 GGTGCCTGCAGCTATTACTCA 60.134 52.381 8.66 0.00 44.23 3.41
1692 5922 3.599285 TTCCGCGATGGTGGTGGAC 62.599 63.158 8.23 0.00 43.36 4.02
1755 5985 1.455032 CGGGGATAGGTTTTGGGGC 60.455 63.158 0.00 0.00 0.00 5.80
1760 5990 1.353022 TGCTGAACGGGGATAGGTTTT 59.647 47.619 0.00 0.00 0.00 2.43
1767 5999 1.094785 CGAAATTGCTGAACGGGGAT 58.905 50.000 0.00 0.00 0.00 3.85
1769 6001 0.168128 GACGAAATTGCTGAACGGGG 59.832 55.000 0.00 0.00 0.00 5.73
1817 6049 1.781025 CGTCAAAAGACAAGGCGGCA 61.781 55.000 13.08 0.00 0.00 5.69
1819 6051 1.574428 CCGTCAAAAGACAAGGCGG 59.426 57.895 0.00 0.00 0.00 6.13
1825 6057 1.606668 GAACCATGCCGTCAAAAGACA 59.393 47.619 0.00 0.00 0.00 3.41
1833 6065 2.109126 GCTCCAGAACCATGCCGTC 61.109 63.158 0.00 0.00 0.00 4.79
1835 6067 2.046023 TGCTCCAGAACCATGCCG 60.046 61.111 0.00 0.00 0.00 5.69
1841 6073 2.206576 AATGAACCTGCTCCAGAACC 57.793 50.000 0.00 0.00 32.44 3.62
1842 6074 3.935828 GAGTAATGAACCTGCTCCAGAAC 59.064 47.826 0.00 0.00 32.44 3.01
1843 6075 3.840666 AGAGTAATGAACCTGCTCCAGAA 59.159 43.478 0.00 0.00 32.44 3.02
1845 6077 3.529533 CAGAGTAATGAACCTGCTCCAG 58.470 50.000 0.00 0.00 0.00 3.86
1850 6082 3.373439 CAGAAGCAGAGTAATGAACCTGC 59.627 47.826 0.00 0.00 45.37 4.85
1851 6083 3.937706 CCAGAAGCAGAGTAATGAACCTG 59.062 47.826 0.00 0.00 32.55 4.00
1852 6084 3.840666 TCCAGAAGCAGAGTAATGAACCT 59.159 43.478 0.00 0.00 0.00 3.50
1853 6085 4.187694 CTCCAGAAGCAGAGTAATGAACC 58.812 47.826 0.00 0.00 0.00 3.62
1893 6133 1.670087 CCTGCCTCGTACTCTGTTGTG 60.670 57.143 0.00 0.00 0.00 3.33
1936 6206 3.818787 GCACGCAATCCCAGCAGG 61.819 66.667 0.00 0.00 0.00 4.85
1954 6249 2.364842 AGGGATCGCTCCAGCACT 60.365 61.111 6.44 0.00 44.08 4.40
1955 6250 2.107953 GAGGGATCGCTCCAGCAC 59.892 66.667 25.34 3.53 44.08 4.40
1956 6251 3.531207 CGAGGGATCGCTCCAGCA 61.531 66.667 28.33 0.00 44.08 4.41
1957 6252 4.292178 CCGAGGGATCGCTCCAGC 62.292 72.222 28.33 9.68 44.08 4.85
1960 6303 1.826921 TGTACCGAGGGATCGCTCC 60.827 63.158 28.33 17.36 41.26 4.70
1969 6312 0.537188 AAGGCAGATGTGTACCGAGG 59.463 55.000 0.00 0.00 0.00 4.63
1972 6315 1.137086 AGCTAAGGCAGATGTGTACCG 59.863 52.381 0.00 0.00 41.70 4.02
1985 6328 1.277557 AGACAACAGAGGCAGCTAAGG 59.722 52.381 0.00 0.00 0.00 2.69
2013 6363 6.095021 TGGAAGCAGAATTGATCATGAGAAAG 59.905 38.462 0.09 0.00 0.00 2.62
2029 6379 4.261801 GTTACTTAAGCCATGGAAGCAGA 58.738 43.478 18.40 0.00 0.00 4.26
2044 6397 7.942341 AGGAACAGATTTTCATGTGGTTACTTA 59.058 33.333 0.00 0.00 0.00 2.24
2045 6398 6.777580 AGGAACAGATTTTCATGTGGTTACTT 59.222 34.615 0.00 0.00 0.00 2.24
2046 6399 6.306987 AGGAACAGATTTTCATGTGGTTACT 58.693 36.000 0.00 0.00 0.00 2.24
2047 6400 6.431234 AGAGGAACAGATTTTCATGTGGTTAC 59.569 38.462 0.00 0.00 0.00 2.50
2100 6455 7.328493 CGTGTCTCATGACTCATAACTTGTAAA 59.672 37.037 0.00 0.00 43.29 2.01
2104 6459 5.402398 TCGTGTCTCATGACTCATAACTTG 58.598 41.667 0.00 0.00 43.29 3.16
2207 6676 6.349777 CCCGCTGGTTATTGTAATTCAAGAAA 60.350 38.462 0.00 0.00 38.66 2.52
2237 6706 1.000396 GAGCTGGGGCATGGACTTT 60.000 57.895 0.00 0.00 41.70 2.66
2240 6709 3.711059 CTGGAGCTGGGGCATGGAC 62.711 68.421 0.00 0.00 41.70 4.02
2281 6763 3.258872 AGCAGCTGGTTATTGCAATTCAA 59.741 39.130 18.75 3.65 40.22 2.69
2284 6766 2.564062 ACAGCAGCTGGTTATTGCAATT 59.436 40.909 26.38 1.81 40.22 2.32
2285 6767 2.173519 ACAGCAGCTGGTTATTGCAAT 58.826 42.857 26.38 17.56 40.22 3.56
2287 6769 1.619654 AACAGCAGCTGGTTATTGCA 58.380 45.000 26.38 0.00 40.22 4.08
2289 6771 2.331194 GCAAACAGCAGCTGGTTATTG 58.669 47.619 25.50 25.30 39.61 1.90
2290 6772 2.730550 GCAAACAGCAGCTGGTTATT 57.269 45.000 25.50 11.02 39.61 1.40
2341 6832 2.618241 CAAACAAGCAGTAGCCAGTTCA 59.382 45.455 0.00 0.00 43.56 3.18
2363 6854 1.492176 CTGCTACCCAATCCAGTCCAT 59.508 52.381 0.00 0.00 0.00 3.41
2368 6859 5.552870 ATTACTACTGCTACCCAATCCAG 57.447 43.478 0.00 0.00 0.00 3.86
2402 6896 4.993905 TCATCGTACATCCTAACACAGTG 58.006 43.478 0.00 0.00 0.00 3.66
2417 6985 4.643334 ACATGTAGTAGCCAGTTCATCGTA 59.357 41.667 0.00 0.00 0.00 3.43
2435 7003 3.119388 CCAATCCATTCAAGCGAACATGT 60.119 43.478 0.00 0.00 32.81 3.21
2437 7005 3.355378 TCCAATCCATTCAAGCGAACAT 58.645 40.909 0.00 0.00 32.81 2.71
2446 7014 6.891361 ACATTCACTACAATCCAATCCATTCA 59.109 34.615 0.00 0.00 0.00 2.57
2449 7022 7.503566 CCTAACATTCACTACAATCCAATCCAT 59.496 37.037 0.00 0.00 0.00 3.41
2455 7028 5.189736 AGAGCCTAACATTCACTACAATCCA 59.810 40.000 0.00 0.00 0.00 3.41
2456 7029 5.675538 AGAGCCTAACATTCACTACAATCC 58.324 41.667 0.00 0.00 0.00 3.01
2458 7031 6.552445 AGAGAGCCTAACATTCACTACAAT 57.448 37.500 0.00 0.00 0.00 2.71
2472 7045 6.155221 ACACAAATGTAGATCAAGAGAGCCTA 59.845 38.462 0.00 0.00 37.26 3.93
2480 7053 9.388506 AGGAAGAATACACAAATGTAGATCAAG 57.611 33.333 0.00 0.00 44.51 3.02
2485 7058 7.334421 GCAGAAGGAAGAATACACAAATGTAGA 59.666 37.037 0.00 0.00 44.51 2.59
2492 7065 3.561313 GGGGCAGAAGGAAGAATACACAA 60.561 47.826 0.00 0.00 0.00 3.33
2509 7082 1.840650 CATGGTTGGTTTGGGGGCA 60.841 57.895 0.00 0.00 0.00 5.36
2511 7084 0.684535 GAACATGGTTGGTTTGGGGG 59.315 55.000 0.00 0.00 0.00 5.40
2512 7085 1.069978 GTGAACATGGTTGGTTTGGGG 59.930 52.381 0.00 0.00 0.00 4.96
2514 7087 1.407258 ACGTGAACATGGTTGGTTTGG 59.593 47.619 0.00 0.00 0.00 3.28
2531 7105 2.681848 AGTTCGAATCGTATCCTGACGT 59.318 45.455 0.00 0.00 43.39 4.34
2542 7116 3.729526 ATGCAAAGACAGTTCGAATCG 57.270 42.857 0.00 0.00 0.00 3.34
2548 7122 6.681777 AGATACCAAAATGCAAAGACAGTTC 58.318 36.000 0.00 0.00 0.00 3.01
2586 7160 1.270274 TCTGCAACTAGTCGCCGTTAA 59.730 47.619 2.74 0.00 0.00 2.01
2588 7162 0.032952 TTCTGCAACTAGTCGCCGTT 59.967 50.000 2.74 0.00 0.00 4.44
2590 7164 1.687494 GCTTCTGCAACTAGTCGCCG 61.687 60.000 2.74 0.00 39.41 6.46
2617 7191 2.664402 ACCACAAGGCATTCTGAACT 57.336 45.000 0.00 0.00 39.06 3.01
2619 7193 2.224018 GCAAACCACAAGGCATTCTGAA 60.224 45.455 0.00 0.00 39.06 3.02
2621 7195 1.068895 TGCAAACCACAAGGCATTCTG 59.931 47.619 0.00 0.00 39.06 3.02
2623 7197 1.501169 GTGCAAACCACAAGGCATTC 58.499 50.000 0.00 0.00 44.06 2.67
2640 7214 2.464682 GCAGTAAGCAGCAGAGGTG 58.535 57.895 0.00 0.00 44.79 4.00
2650 7224 4.540824 CAACTTTTGAGAAGGCAGTAAGC 58.459 43.478 0.00 0.00 44.65 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.