Multiple sequence alignment - TraesCS5B01G349800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G349800 chr5B 100.000 4810 0 0 1 4810 530964974 530969783 0.000000e+00 8883.0
1 TraesCS5B01G349800 chr5B 85.298 1510 137 31 2182 3663 530626853 530625401 0.000000e+00 1480.0
2 TraesCS5B01G349800 chr5B 85.333 1275 111 25 2054 3313 530708812 530707599 0.000000e+00 1249.0
3 TraesCS5B01G349800 chr5B 79.648 511 42 17 4141 4600 530623483 530622984 1.300000e-80 311.0
4 TraesCS5B01G349800 chr5B 95.489 133 5 1 3297 3429 530705878 530705747 1.360000e-50 211.0
5 TraesCS5B01G349800 chr5B 94.805 77 4 0 3427 3503 530704027 530703951 2.350000e-23 121.0
6 TraesCS5B01G349800 chr5D 94.545 1925 85 6 2367 4282 436800592 436802505 0.000000e+00 2955.0
7 TraesCS5B01G349800 chr5D 86.328 1419 128 26 2054 3454 436591510 436590140 0.000000e+00 1485.0
8 TraesCS5B01G349800 chr5D 85.327 1070 78 47 720 1787 436798857 436799849 0.000000e+00 1033.0
9 TraesCS5B01G349800 chr5D 94.091 440 22 3 1942 2381 436800074 436800509 0.000000e+00 665.0
10 TraesCS5B01G349800 chr5D 74.582 1137 142 64 3602 4657 436588870 436587800 3.540000e-96 363.0
11 TraesCS5B01G349800 chr5D 77.389 429 67 18 3574 3987 436584024 436583611 1.350000e-55 228.0
12 TraesCS5B01G349800 chr5D 83.333 102 15 2 3982 4083 436583589 436583490 5.130000e-15 93.5
13 TraesCS5B01G349800 chr5D 100.000 31 0 0 4302 4332 436802510 436802540 1.870000e-04 58.4
14 TraesCS5B01G349800 chr5A 94.218 1937 91 10 2043 3965 552070859 552072788 0.000000e+00 2937.0
15 TraesCS5B01G349800 chr5A 85.391 1677 167 35 2015 3663 551054428 551052802 0.000000e+00 1668.0
16 TraesCS5B01G349800 chr5A 87.080 1130 77 33 713 1830 552069195 552070267 0.000000e+00 1214.0
17 TraesCS5B01G349800 chr5A 85.627 654 54 19 4014 4653 552072787 552073414 0.000000e+00 651.0
18 TraesCS5B01G349800 chr5A 93.631 157 9 1 4652 4808 552073562 552073717 2.890000e-57 233.0
19 TraesCS5B01G349800 chr5A 76.020 392 72 13 3592 3968 551046875 551046491 2.960000e-42 183.0
20 TraesCS5B01G349800 chr6D 94.366 710 39 1 1 710 308890244 308889536 0.000000e+00 1088.0
21 TraesCS5B01G349800 chr2B 92.686 711 49 3 1 710 406692001 406692709 0.000000e+00 1022.0
22 TraesCS5B01G349800 chr2B 76.259 417 82 14 1226 1634 47684169 47684576 6.310000e-49 206.0
23 TraesCS5B01G349800 chr2B 76.259 417 82 14 1226 1634 47709848 47710255 6.310000e-49 206.0
24 TraesCS5B01G349800 chr2B 76.259 417 82 14 1226 1634 47815530 47815937 6.310000e-49 206.0
25 TraesCS5B01G349800 chr2B 75.540 417 85 14 1226 1634 47743877 47744284 6.360000e-44 189.0
26 TraesCS5B01G349800 chr7A 91.713 712 56 3 1 710 163929650 163928940 0.000000e+00 985.0
27 TraesCS5B01G349800 chr7A 90.084 716 60 6 1 709 639653667 639654378 0.000000e+00 918.0
28 TraesCS5B01G349800 chr7A 93.478 92 6 0 1 92 639649021 639649112 2.330000e-28 137.0
29 TraesCS5B01G349800 chr1D 91.152 712 43 4 1 710 422689235 422688542 0.000000e+00 948.0
30 TraesCS5B01G349800 chr3A 90.682 719 56 6 1 711 27758961 27758246 0.000000e+00 946.0
31 TraesCS5B01G349800 chrUn 87.483 719 69 10 5 710 42175088 42174378 0.000000e+00 809.0
32 TraesCS5B01G349800 chrUn 84.221 526 72 7 190 710 232287107 232287626 7.190000e-138 501.0
33 TraesCS5B01G349800 chrUn 86.139 404 50 5 7 406 232286778 232287179 9.560000e-117 431.0
34 TraesCS5B01G349800 chrUn 76.259 417 82 14 1226 1634 406625125 406625532 6.310000e-49 206.0
35 TraesCS5B01G349800 chr4A 92.944 411 28 1 301 711 663146164 663145755 8.910000e-167 597.0
36 TraesCS5B01G349800 chr4A 94.314 299 17 0 1 299 663158392 663158094 4.390000e-125 459.0
37 TraesCS5B01G349800 chr6A 88.462 208 13 4 3297 3502 496391261 496391063 1.730000e-59 241.0
38 TraesCS5B01G349800 chr2D 75.418 419 82 18 1226 1634 29685089 29685496 2.960000e-42 183.0
39 TraesCS5B01G349800 chr2A 75.060 417 87 13 1226 1634 31896411 31896818 1.380000e-40 178.0
40 TraesCS5B01G349800 chr1B 77.586 116 25 1 2457 2572 150993716 150993602 8.640000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G349800 chr5B 530964974 530969783 4809 False 8883.000 8883 100.000000 1 4810 1 chr5B.!!$F1 4809
1 TraesCS5B01G349800 chr5B 530622984 530626853 3869 True 895.500 1480 82.473000 2182 4600 2 chr5B.!!$R1 2418
2 TraesCS5B01G349800 chr5B 530703951 530708812 4861 True 527.000 1249 91.875667 2054 3503 3 chr5B.!!$R2 1449
3 TraesCS5B01G349800 chr5D 436798857 436802540 3683 False 1177.850 2955 93.490750 720 4332 4 chr5D.!!$F1 3612
4 TraesCS5B01G349800 chr5D 436583490 436591510 8020 True 542.375 1485 80.408000 2054 4657 4 chr5D.!!$R1 2603
5 TraesCS5B01G349800 chr5A 551052802 551054428 1626 True 1668.000 1668 85.391000 2015 3663 1 chr5A.!!$R2 1648
6 TraesCS5B01G349800 chr5A 552069195 552073717 4522 False 1258.750 2937 90.139000 713 4808 4 chr5A.!!$F1 4095
7 TraesCS5B01G349800 chr6D 308889536 308890244 708 True 1088.000 1088 94.366000 1 710 1 chr6D.!!$R1 709
8 TraesCS5B01G349800 chr2B 406692001 406692709 708 False 1022.000 1022 92.686000 1 710 1 chr2B.!!$F5 709
9 TraesCS5B01G349800 chr7A 163928940 163929650 710 True 985.000 985 91.713000 1 710 1 chr7A.!!$R1 709
10 TraesCS5B01G349800 chr7A 639653667 639654378 711 False 918.000 918 90.084000 1 709 1 chr7A.!!$F2 708
11 TraesCS5B01G349800 chr1D 422688542 422689235 693 True 948.000 948 91.152000 1 710 1 chr1D.!!$R1 709
12 TraesCS5B01G349800 chr3A 27758246 27758961 715 True 946.000 946 90.682000 1 711 1 chr3A.!!$R1 710
13 TraesCS5B01G349800 chrUn 42174378 42175088 710 True 809.000 809 87.483000 5 710 1 chrUn.!!$R1 705
14 TraesCS5B01G349800 chrUn 232286778 232287626 848 False 466.000 501 85.180000 7 710 2 chrUn.!!$F2 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 273 0.309922 GAGACGCCCATCGACGATTA 59.690 55.0 7.83 0.0 41.67 1.75 F
1008 1188 0.301687 GATGCCGCGTGACACATAAG 59.698 55.0 4.92 0.0 0.00 1.73 F
2158 2876 0.107654 AAGGGCCGGAGAAATTCGAG 60.108 55.0 5.05 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1111 1306 0.108138 AGGTGATGTTAGAGCGTGGC 60.108 55.000 0.0 0.0 0.0 5.01 R
2624 3468 0.032952 TTGCGAGAGTGGTGTGGTAC 59.967 55.000 0.0 0.0 0.0 3.34 R
4006 10920 1.134220 TCTTTTGGACACCTCACGCTT 60.134 47.619 0.0 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 250 4.109675 CCCCGATTTGGCCTCCGT 62.110 66.667 3.32 0.00 35.87 4.69
256 270 1.989966 GAAGAGACGCCCATCGACGA 61.990 60.000 0.00 0.00 41.67 4.20
259 273 0.309922 GAGACGCCCATCGACGATTA 59.690 55.000 7.83 0.00 41.67 1.75
266 280 1.668919 CCCATCGACGATTACCGGATG 60.669 57.143 9.46 0.00 43.93 3.51
307 329 3.023116 CCCCCATTGGCCTCCAGA 61.023 66.667 3.32 0.00 33.81 3.86
310 332 2.679092 CCATTGGCCTCCAGAGCA 59.321 61.111 3.32 0.00 33.81 4.26
435 601 1.450312 CAACCTGTGGCGAGGATCC 60.450 63.158 2.48 2.48 36.51 3.36
447 613 2.603173 GCGAGGATCCGATTGCATTTTC 60.603 50.000 5.98 0.00 0.00 2.29
448 614 2.031682 CGAGGATCCGATTGCATTTTCC 60.032 50.000 5.98 0.00 0.00 3.13
468 635 3.502356 CCCTTTTTGCTTTAGGGGTGTA 58.498 45.455 0.00 0.00 44.11 2.90
477 644 5.005094 TGCTTTAGGGGTGTATGTGTAAAC 58.995 41.667 0.00 0.00 0.00 2.01
688 859 1.877443 GCAAACCTCGCCTTCAAAGTA 59.123 47.619 0.00 0.00 0.00 2.24
711 882 6.220726 AGTGGTTTTGTGCAATTTACTCTT 57.779 33.333 0.00 0.00 0.00 2.85
712 883 6.273071 AGTGGTTTTGTGCAATTTACTCTTC 58.727 36.000 0.00 0.00 0.00 2.87
713 884 6.096846 AGTGGTTTTGTGCAATTTACTCTTCT 59.903 34.615 0.00 0.00 0.00 2.85
714 885 6.417930 GTGGTTTTGTGCAATTTACTCTTCTC 59.582 38.462 0.00 0.00 0.00 2.87
715 886 6.321181 TGGTTTTGTGCAATTTACTCTTCTCT 59.679 34.615 0.00 0.00 0.00 3.10
716 887 6.638468 GGTTTTGTGCAATTTACTCTTCTCTG 59.362 38.462 0.00 0.00 0.00 3.35
717 888 5.947228 TTGTGCAATTTACTCTTCTCTGG 57.053 39.130 0.00 0.00 0.00 3.86
718 889 4.326826 TGTGCAATTTACTCTTCTCTGGG 58.673 43.478 0.00 0.00 0.00 4.45
810 981 6.943146 TGACGAAGAGATATGATAGGCTAAGT 59.057 38.462 0.00 0.00 0.00 2.24
824 995 5.000012 AGGCTAAGTGTAGATTTGACGAG 58.000 43.478 0.00 0.00 0.00 4.18
826 1001 3.552294 GCTAAGTGTAGATTTGACGAGCC 59.448 47.826 0.00 0.00 0.00 4.70
827 1002 2.674796 AGTGTAGATTTGACGAGCCC 57.325 50.000 0.00 0.00 0.00 5.19
829 1004 2.166664 AGTGTAGATTTGACGAGCCCTC 59.833 50.000 0.00 0.00 0.00 4.30
832 1007 1.859302 AGATTTGACGAGCCCTCTCT 58.141 50.000 0.00 0.00 37.19 3.10
840 1015 1.118838 CGAGCCCTCTCTGGAATCTT 58.881 55.000 0.00 0.00 37.19 2.40
845 1020 1.137872 CCCTCTCTGGAATCTTCACGG 59.862 57.143 0.00 0.00 38.35 4.94
849 1024 3.926616 TCTCTGGAATCTTCACGGAAAC 58.073 45.455 0.00 0.00 0.00 2.78
863 1043 3.124636 CACGGAAACTAGTAGCGCAAAAT 59.875 43.478 11.47 0.00 0.00 1.82
867 1047 5.615984 CGGAAACTAGTAGCGCAAAATGAAA 60.616 40.000 11.47 0.00 0.00 2.69
893 1073 2.429971 GCTGTAACCACTACTCCTACCC 59.570 54.545 0.00 0.00 0.00 3.69
906 1086 1.063867 TCCTACCCTAGCACTCTCCAC 60.064 57.143 0.00 0.00 0.00 4.02
907 1087 1.063567 CCTACCCTAGCACTCTCCACT 60.064 57.143 0.00 0.00 0.00 4.00
908 1088 2.175069 CCTACCCTAGCACTCTCCACTA 59.825 54.545 0.00 0.00 0.00 2.74
909 1089 2.146920 ACCCTAGCACTCTCCACTAC 57.853 55.000 0.00 0.00 0.00 2.73
935 1115 1.073964 CTTGCACATCTCACCACTCG 58.926 55.000 0.00 0.00 0.00 4.18
973 1153 7.010339 ACTGACAGTTCTAGAAAAGGCTAAT 57.990 36.000 6.78 0.00 0.00 1.73
1004 1184 3.041351 GTGATGCCGCGTGACACA 61.041 61.111 4.92 0.00 0.00 3.72
1007 1187 0.390472 TGATGCCGCGTGACACATAA 60.390 50.000 4.92 0.00 0.00 1.90
1008 1188 0.301687 GATGCCGCGTGACACATAAG 59.698 55.000 4.92 0.00 0.00 1.73
1009 1189 1.705337 ATGCCGCGTGACACATAAGC 61.705 55.000 4.92 3.37 0.00 3.09
1013 1193 1.999051 GCGTGACACATAAGCGAGG 59.001 57.895 6.37 0.00 0.00 4.63
1014 1194 0.457853 GCGTGACACATAAGCGAGGA 60.458 55.000 6.37 0.00 0.00 3.71
1015 1195 1.550065 CGTGACACATAAGCGAGGAG 58.450 55.000 6.37 0.00 0.00 3.69
1027 1207 2.259266 GCGAGGAGCCTACTAGTAGT 57.741 55.000 24.84 8.14 40.81 2.73
1028 1208 3.399440 GCGAGGAGCCTACTAGTAGTA 57.601 52.381 24.84 9.66 40.81 1.82
1029 1209 3.066380 GCGAGGAGCCTACTAGTAGTAC 58.934 54.545 24.84 17.52 40.81 2.73
1030 1210 3.244181 GCGAGGAGCCTACTAGTAGTACT 60.244 52.174 24.84 21.23 40.81 2.73
1064 1259 0.805711 CGAGTGGCATGCATACACGA 60.806 55.000 27.23 2.04 39.95 4.35
1093 1288 1.748493 TGTGACCTGCAAAGTCCAAAC 59.252 47.619 12.65 6.39 33.09 2.93
1110 1305 4.722700 CCCAGCTGAACCCACCCG 62.723 72.222 17.39 0.00 0.00 5.28
1111 1306 4.722700 CCAGCTGAACCCACCCGG 62.723 72.222 17.39 0.00 37.81 5.73
1139 1334 2.316677 TCTAACATCACCTCCCCCACTA 59.683 50.000 0.00 0.00 0.00 2.74
1161 1359 1.165907 TCCTCACAAGCAAACGCCAG 61.166 55.000 0.00 0.00 0.00 4.85
1162 1360 1.370900 CTCACAAGCAAACGCCAGC 60.371 57.895 0.00 0.00 0.00 4.85
1165 1363 4.705519 CAAGCAAACGCCAGCCCG 62.706 66.667 0.00 0.00 0.00 6.13
1175 1373 3.434319 CCAGCCCGCATCACACAC 61.434 66.667 0.00 0.00 0.00 3.82
1190 1388 0.599991 CACACTCACACGCTAGCCAA 60.600 55.000 9.66 0.00 0.00 4.52
1194 1392 1.291877 CTCACACGCTAGCCAACCAC 61.292 60.000 9.66 0.00 0.00 4.16
1196 1394 1.301716 ACACGCTAGCCAACCACTG 60.302 57.895 9.66 0.00 0.00 3.66
1323 1521 2.401766 GGCCGGTCGTCTTCGAGTA 61.402 63.158 1.90 0.00 46.96 2.59
1676 1874 0.247735 CGACGTCGAGGTAAGAGCAG 60.248 60.000 33.35 0.00 43.02 4.24
1687 1885 2.031437 GGTAAGAGCAGGAGTACGTACG 59.969 54.545 19.49 15.01 0.00 3.67
1730 1928 1.001487 CAGCGAAATTTGTGTGGCTCA 60.001 47.619 0.00 0.00 0.00 4.26
1735 1933 4.549458 CGAAATTTGTGTGGCTCATCTTT 58.451 39.130 0.00 0.00 0.00 2.52
1799 1997 0.524414 CTGTCGTACGGTGTCATCCA 59.476 55.000 16.52 0.00 0.00 3.41
1817 2015 3.084039 TCCATGTTGCTCATTCTCAACC 58.916 45.455 0.00 0.00 41.21 3.77
1863 2139 5.489792 ACACTTGAACAGATCATACTGGT 57.510 39.130 0.00 0.00 40.78 4.00
1864 2140 6.605471 ACACTTGAACAGATCATACTGGTA 57.395 37.500 0.00 0.00 37.99 3.25
1865 2141 6.398918 ACACTTGAACAGATCATACTGGTAC 58.601 40.000 0.00 0.00 37.99 3.34
1866 2142 6.211584 ACACTTGAACAGATCATACTGGTACT 59.788 38.462 0.00 0.00 37.99 2.73
1867 2143 6.533012 CACTTGAACAGATCATACTGGTACTG 59.467 42.308 0.00 0.00 37.99 2.74
1868 2144 5.598416 TGAACAGATCATACTGGTACTGG 57.402 43.478 0.00 0.00 37.99 4.00
1869 2145 4.141937 TGAACAGATCATACTGGTACTGGC 60.142 45.833 0.00 0.00 37.99 4.85
1870 2146 3.647636 ACAGATCATACTGGTACTGGCT 58.352 45.455 0.00 0.00 41.59 4.75
1884 2160 7.071950 ACTGGTACTGGCTTATGTATATCCAAA 59.928 37.037 0.00 0.00 0.00 3.28
1931 2243 6.262496 GCAACCAGCATCATCAGCATATATAT 59.738 38.462 0.00 0.00 44.79 0.86
2006 2689 5.424121 ACACTTCAGTTCATGCTAAACAC 57.576 39.130 0.00 0.00 0.00 3.32
2012 2695 3.004629 CAGTTCATGCTAAACACTGGCAA 59.995 43.478 0.00 0.00 39.46 4.52
2013 2696 3.004734 AGTTCATGCTAAACACTGGCAAC 59.995 43.478 0.00 0.00 39.46 4.17
2026 2709 1.250328 TGGCAACAGCTGATTCTTGG 58.750 50.000 23.35 0.00 46.17 3.61
2030 2713 2.434428 CAACAGCTGATTCTTGGCTCT 58.566 47.619 23.35 0.00 33.74 4.09
2034 2717 2.614520 CAGCTGATTCTTGGCTCTGATG 59.385 50.000 8.42 0.00 33.74 3.07
2036 2719 2.613133 GCTGATTCTTGGCTCTGATGTC 59.387 50.000 0.00 0.00 0.00 3.06
2037 2720 3.870274 CTGATTCTTGGCTCTGATGTCA 58.130 45.455 0.00 0.00 0.00 3.58
2038 2721 4.259356 CTGATTCTTGGCTCTGATGTCAA 58.741 43.478 0.00 0.00 0.00 3.18
2039 2722 4.005650 TGATTCTTGGCTCTGATGTCAAC 58.994 43.478 0.00 0.00 0.00 3.18
2040 2723 3.777106 TTCTTGGCTCTGATGTCAACT 57.223 42.857 0.00 0.00 0.00 3.16
2041 2724 3.325293 TCTTGGCTCTGATGTCAACTC 57.675 47.619 0.00 0.00 0.00 3.01
2111 2826 1.146930 GGGAGATTCAGCGGCATCA 59.853 57.895 1.45 0.00 0.00 3.07
2152 2868 1.302192 CGACAAAGGGCCGGAGAAA 60.302 57.895 5.05 0.00 0.00 2.52
2158 2876 0.107654 AAGGGCCGGAGAAATTCGAG 60.108 55.000 5.05 0.00 0.00 4.04
2337 3084 0.516439 GCAACTCTTCACTGCAGAGC 59.484 55.000 23.35 5.98 41.49 4.09
2355 3102 3.008485 AGAGCGATCAAAAGGAAGAAGGT 59.992 43.478 2.38 0.00 0.00 3.50
2362 3109 6.017109 CGATCAAAAGGAAGAAGGTTTCAGAA 60.017 38.462 0.00 0.00 0.00 3.02
2624 3468 2.622436 GCCACTAGCAGTTCCTACTTG 58.378 52.381 0.00 0.00 42.97 3.16
2640 3484 1.340248 ACTTGTACCACACCACTCTCG 59.660 52.381 0.00 0.00 0.00 4.04
2688 3532 4.276642 TGCTCATGCATGTATTTAACCCA 58.723 39.130 25.43 8.27 45.31 4.51
2693 3537 7.382218 GCTCATGCATGTATTTAACCCAAATAC 59.618 37.037 25.43 11.25 45.85 1.89
2754 3598 3.009143 TCGAGAGCTACTATAGATGGGCA 59.991 47.826 6.78 0.00 0.00 5.36
2757 3601 5.502079 GAGAGCTACTATAGATGGGCAGTA 58.498 45.833 6.78 0.00 0.00 2.74
2937 3783 0.034198 TTGTCGAAGGTGATTCCGCA 59.966 50.000 0.00 0.00 41.99 5.69
3557 10218 6.790285 AAATCAAACAGAAACATTGCCATC 57.210 33.333 0.00 0.00 0.00 3.51
3568 10229 0.825010 ATTGCCATCCCAGCGATTCC 60.825 55.000 0.00 0.00 29.71 3.01
3588 10249 4.827692 TCCGTGCTGACTATTGTACAAAT 58.172 39.130 13.23 0.97 0.00 2.32
3630 10291 2.961526 TCGGTTGAACCTAGATCTGC 57.038 50.000 13.18 0.00 35.66 4.26
3648 10309 3.118261 TCTGCTGCCCTGTTCCTAAATAG 60.118 47.826 0.00 0.00 0.00 1.73
3663 10326 4.514441 CCTAAATAGATGCAGCAAGTCAGG 59.486 45.833 4.07 0.83 0.00 3.86
3682 10345 7.328737 AGTCAGGTGTTAAATCATACAGTACC 58.671 38.462 0.00 0.00 0.00 3.34
3773 10439 7.558161 TGATATGCTTCATGTAAACTTCCTG 57.442 36.000 0.00 0.00 0.00 3.86
3774 10440 6.543465 TGATATGCTTCATGTAAACTTCCTGG 59.457 38.462 0.00 0.00 0.00 4.45
3787 10453 2.002586 CTTCCTGGTGAACTATGTGCG 58.997 52.381 0.00 0.00 0.00 5.34
3796 10462 2.009774 GAACTATGTGCGCATCAACCT 58.990 47.619 17.64 1.64 36.58 3.50
3839 10513 3.812053 ACTGAGCAGACTTGTCAATTGAC 59.188 43.478 28.10 28.10 44.97 3.18
3887 10801 3.818210 CCTAAAAACAAAAATGGTGCCCC 59.182 43.478 0.00 0.00 0.00 5.80
3917 10831 3.506844 CCCGGATCTTTAGCTACTCTACC 59.493 52.174 0.73 0.00 0.00 3.18
3929 10843 6.557291 AGCTACTCTACCGTGACATATAAC 57.443 41.667 0.00 0.00 0.00 1.89
4041 10955 6.017109 TGTCCAAAAGACTGCTCTGAAAATAC 60.017 38.462 0.00 0.00 46.46 1.89
4215 11159 2.038033 TGGCTGTAACCTGTAAGTGACC 59.962 50.000 0.00 0.00 0.00 4.02
4295 11239 3.278367 CTCAAAGTGCAACATGAGGTG 57.722 47.619 13.40 0.00 44.40 4.00
4298 11242 2.884012 CAAAGTGCAACATGAGGTGGTA 59.116 45.455 0.00 0.00 41.43 3.25
4300 11244 2.715046 AGTGCAACATGAGGTGGTATG 58.285 47.619 0.00 0.00 41.43 2.39
4383 11331 3.952323 AGGCATCTTCAAACTCATCCATG 59.048 43.478 0.00 0.00 0.00 3.66
4415 11378 0.946221 CCAGTGTGTCGCTGAAGACC 60.946 60.000 11.19 0.00 43.78 3.85
4416 11379 0.946221 CAGTGTGTCGCTGAAGACCC 60.946 60.000 4.56 0.00 43.78 4.46
4417 11380 1.069090 GTGTGTCGCTGAAGACCCA 59.931 57.895 2.18 0.00 40.26 4.51
4418 11381 0.531974 GTGTGTCGCTGAAGACCCAA 60.532 55.000 2.18 0.00 40.26 4.12
4419 11382 0.179234 TGTGTCGCTGAAGACCCAAA 59.821 50.000 2.18 0.00 40.26 3.28
4420 11383 1.305201 GTGTCGCTGAAGACCCAAAA 58.695 50.000 2.18 0.00 40.26 2.44
4461 11424 7.433680 ACAGAAAATAAAACAAGACATGGGAC 58.566 34.615 0.00 0.00 0.00 4.46
4464 11427 5.722021 AATAAAACAAGACATGGGACCAC 57.278 39.130 0.00 0.00 0.00 4.16
4527 11506 0.392998 GTTCGGTGTCATCCAGCCAT 60.393 55.000 0.00 0.00 38.36 4.40
4532 11511 1.410648 GGTGTCATCCAGCCATCCAAT 60.411 52.381 0.00 0.00 35.48 3.16
4570 11568 4.392138 CAGAGAATCGAACCCAAGGTTTAC 59.608 45.833 0.00 0.00 46.95 2.01
4583 11581 5.526111 CCCAAGGTTTACATAATAGACACCG 59.474 44.000 0.00 0.00 0.00 4.94
4600 11598 0.103208 CCGTTTCCTCTCCATCCTCG 59.897 60.000 0.00 0.00 0.00 4.63
4637 11635 0.990374 ACTCTGAAGAAGGGCAGCAT 59.010 50.000 0.00 0.00 32.27 3.79
4640 11638 2.941720 CTCTGAAGAAGGGCAGCATAAC 59.058 50.000 0.00 0.00 32.27 1.89
4643 11641 2.305635 TGAAGAAGGGCAGCATAACAGA 59.694 45.455 0.00 0.00 0.00 3.41
4644 11642 2.409948 AGAAGGGCAGCATAACAGAC 57.590 50.000 0.00 0.00 0.00 3.51
4645 11643 1.630369 AGAAGGGCAGCATAACAGACA 59.370 47.619 0.00 0.00 0.00 3.41
4646 11644 2.012673 GAAGGGCAGCATAACAGACAG 58.987 52.381 0.00 0.00 0.00 3.51
4648 11646 0.253044 GGGCAGCATAACAGACAGGA 59.747 55.000 0.00 0.00 0.00 3.86
4650 11648 2.012673 GGCAGCATAACAGACAGGAAG 58.987 52.381 0.00 0.00 0.00 3.46
4731 11919 1.017177 TACATGCGCGAGTTTGACCC 61.017 55.000 12.10 0.00 0.00 4.46
4763 11951 3.678056 TCAAGTTCAATAGTCAGGCGT 57.322 42.857 0.00 0.00 0.00 5.68
4806 11994 0.034616 GCCGAGGAAGAGATCATGGG 59.965 60.000 0.00 0.00 40.30 4.00
4807 11995 1.709578 CCGAGGAAGAGATCATGGGA 58.290 55.000 0.00 0.00 39.79 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 215 4.733542 CCAAATCGGGGCGGTGGT 62.734 66.667 0.00 0.00 0.00 4.16
236 250 1.511305 GTCGATGGGCGTCTCTTCA 59.489 57.895 0.00 0.00 41.80 3.02
294 316 1.035932 CCTTGCTCTGGAGGCCAATG 61.036 60.000 5.01 0.00 30.80 2.82
375 541 4.704833 GGCACCTCCTTGCGCAGA 62.705 66.667 11.31 4.40 44.00 4.26
435 601 3.747529 AGCAAAAAGGGAAAATGCAATCG 59.252 39.130 0.00 0.00 39.42 3.34
448 614 4.526650 ACATACACCCCTAAAGCAAAAAGG 59.473 41.667 0.00 0.00 0.00 3.11
468 635 8.154856 ACAAACTAGTCCATACAGTTTACACAT 58.845 33.333 0.00 0.00 39.78 3.21
548 715 0.625849 CTTATGACAGTTGGGGCCCT 59.374 55.000 25.93 1.41 0.00 5.19
620 788 4.847198 TGCAGAATACACCATGTCTTCAT 58.153 39.130 9.05 0.00 36.35 2.57
667 838 0.667993 CTTTGAAGGCGAGGTTTGCA 59.332 50.000 0.00 0.00 0.00 4.08
676 847 3.066203 ACAAAACCACTACTTTGAAGGCG 59.934 43.478 1.80 0.00 36.30 5.52
688 859 5.852282 AGAGTAAATTGCACAAAACCACT 57.148 34.783 0.00 0.00 0.00 4.00
711 882 2.936919 AAATATGCATCGCCCAGAGA 57.063 45.000 0.19 0.00 0.00 3.10
712 883 3.304928 GGAAAAATATGCATCGCCCAGAG 60.305 47.826 0.19 0.00 0.00 3.35
713 884 2.622942 GGAAAAATATGCATCGCCCAGA 59.377 45.455 0.19 0.00 0.00 3.86
714 885 2.624838 AGGAAAAATATGCATCGCCCAG 59.375 45.455 0.19 0.00 0.00 4.45
715 886 2.361757 CAGGAAAAATATGCATCGCCCA 59.638 45.455 0.19 0.00 0.00 5.36
716 887 2.622942 TCAGGAAAAATATGCATCGCCC 59.377 45.455 0.19 0.00 0.00 6.13
717 888 3.988379 TCAGGAAAAATATGCATCGCC 57.012 42.857 0.19 0.00 0.00 5.54
718 889 4.153986 CGATCAGGAAAAATATGCATCGC 58.846 43.478 0.19 0.00 0.00 4.58
753 924 5.775686 CAGGAGAAATGTGCAAAAGATGAA 58.224 37.500 0.00 0.00 0.00 2.57
803 974 3.552294 GCTCGTCAAATCTACACTTAGCC 59.448 47.826 0.00 0.00 0.00 3.93
810 981 2.427453 GAGAGGGCTCGTCAAATCTACA 59.573 50.000 0.00 0.00 34.09 2.74
824 995 1.472376 CGTGAAGATTCCAGAGAGGGC 60.472 57.143 0.00 0.00 38.24 5.19
826 1001 2.103373 TCCGTGAAGATTCCAGAGAGG 58.897 52.381 0.00 0.00 39.47 3.69
827 1002 3.876274 TTCCGTGAAGATTCCAGAGAG 57.124 47.619 0.00 0.00 0.00 3.20
829 1004 3.931578 AGTTTCCGTGAAGATTCCAGAG 58.068 45.455 0.00 0.00 0.00 3.35
832 1007 4.884668 ACTAGTTTCCGTGAAGATTCCA 57.115 40.909 0.00 0.00 0.00 3.53
840 1015 0.883153 TGCGCTACTAGTTTCCGTGA 59.117 50.000 9.73 0.00 0.00 4.35
845 1020 6.087687 GGTTTTCATTTTGCGCTACTAGTTTC 59.912 38.462 9.73 0.00 0.00 2.78
849 1024 5.088739 CAGGTTTTCATTTTGCGCTACTAG 58.911 41.667 9.73 0.00 0.00 2.57
863 1043 3.290948 AGTGGTTACAGCAGGTTTTCA 57.709 42.857 0.00 0.00 0.00 2.69
867 1047 2.302157 GGAGTAGTGGTTACAGCAGGTT 59.698 50.000 0.00 0.00 34.56 3.50
893 1073 5.883673 AGAAACTAGTAGTGGAGAGTGCTAG 59.116 44.000 2.90 0.00 41.36 3.42
906 1086 5.578727 GGTGAGATGTGCAAGAAACTAGTAG 59.421 44.000 0.00 0.00 0.00 2.57
907 1087 5.011635 TGGTGAGATGTGCAAGAAACTAGTA 59.988 40.000 0.00 0.00 0.00 1.82
908 1088 4.202357 TGGTGAGATGTGCAAGAAACTAGT 60.202 41.667 0.00 0.00 0.00 2.57
909 1089 4.153117 GTGGTGAGATGTGCAAGAAACTAG 59.847 45.833 0.00 0.00 0.00 2.57
935 1115 4.022849 AACTGTCAGTTTAGCATTTGCTCC 60.023 41.667 12.62 0.00 40.82 4.70
999 1179 0.461961 AGGCTCCTCGCTTATGTGTC 59.538 55.000 0.00 0.00 39.13 3.67
1004 1184 3.512219 ACTAGTAGGCTCCTCGCTTAT 57.488 47.619 1.45 0.00 39.13 1.73
1007 1187 1.770061 ACTACTAGTAGGCTCCTCGCT 59.230 52.381 29.05 6.48 37.49 4.93
1008 1188 2.259266 ACTACTAGTAGGCTCCTCGC 57.741 55.000 29.05 0.00 37.49 5.03
1009 1189 4.605640 AGTACTACTAGTAGGCTCCTCG 57.394 50.000 29.05 7.31 37.49 4.63
1064 1259 0.467844 TGCAGGTCACATGCTTTGGT 60.468 50.000 16.64 0.00 44.17 3.67
1093 1288 4.722700 CGGGTGGGTTCAGCTGGG 62.723 72.222 15.13 0.00 42.37 4.45
1110 1305 1.090052 GGTGATGTTAGAGCGTGGCC 61.090 60.000 0.00 0.00 0.00 5.36
1111 1306 0.108138 AGGTGATGTTAGAGCGTGGC 60.108 55.000 0.00 0.00 0.00 5.01
1112 1307 1.471676 GGAGGTGATGTTAGAGCGTGG 60.472 57.143 0.00 0.00 0.00 4.94
1114 1309 0.824759 GGGAGGTGATGTTAGAGCGT 59.175 55.000 0.00 0.00 0.00 5.07
1116 1311 0.470341 GGGGGAGGTGATGTTAGAGC 59.530 60.000 0.00 0.00 0.00 4.09
1118 1313 1.080498 AGTGGGGGAGGTGATGTTAGA 59.920 52.381 0.00 0.00 0.00 2.10
1119 1314 1.584724 AGTGGGGGAGGTGATGTTAG 58.415 55.000 0.00 0.00 0.00 2.34
1120 1315 2.841881 GTTAGTGGGGGAGGTGATGTTA 59.158 50.000 0.00 0.00 0.00 2.41
1121 1316 1.633945 GTTAGTGGGGGAGGTGATGTT 59.366 52.381 0.00 0.00 0.00 2.71
1139 1334 0.663153 GCGTTTGCTTGTGAGGAGTT 59.337 50.000 0.00 0.00 38.39 3.01
1161 1359 2.358615 TGAGTGTGTGATGCGGGC 60.359 61.111 0.00 0.00 0.00 6.13
1162 1360 1.301637 TGTGAGTGTGTGATGCGGG 60.302 57.895 0.00 0.00 0.00 6.13
1165 1363 1.205064 GCGTGTGAGTGTGTGATGC 59.795 57.895 0.00 0.00 0.00 3.91
1166 1364 1.988467 CTAGCGTGTGAGTGTGTGATG 59.012 52.381 0.00 0.00 0.00 3.07
1174 1372 1.004918 GGTTGGCTAGCGTGTGAGT 60.005 57.895 9.00 0.00 0.00 3.41
1175 1373 1.005037 TGGTTGGCTAGCGTGTGAG 60.005 57.895 9.00 0.00 0.00 3.51
1203 1401 2.282674 CCATGATGGGATGGGCCG 60.283 66.667 2.79 0.00 39.53 6.13
1204 1402 1.076192 CTCCATGATGGGATGGGCC 59.924 63.158 12.26 0.00 42.95 5.80
1653 1851 4.465512 TTACCTCGACGTCGCCGC 62.466 66.667 32.19 0.00 39.60 6.53
1676 1874 0.171231 GTTCCCACCGTACGTACTCC 59.829 60.000 22.55 0.00 0.00 3.85
1687 1885 2.159142 CGTACAGTATGAGGTTCCCACC 60.159 54.545 0.00 0.00 41.39 4.61
1730 1928 4.588951 TGACACTGTACTGGAGTGAAAGAT 59.411 41.667 16.37 0.00 43.04 2.40
1735 1933 2.826128 GGATGACACTGTACTGGAGTGA 59.174 50.000 16.37 4.48 43.04 3.41
1799 1997 4.660168 AGAAGGTTGAGAATGAGCAACAT 58.340 39.130 0.00 0.00 41.45 2.71
1831 2029 4.257731 TCTGTTCAAGTGTTACAGCAACA 58.742 39.130 0.00 0.00 44.97 3.33
1832 2030 4.875544 TCTGTTCAAGTGTTACAGCAAC 57.124 40.909 0.00 0.00 39.24 4.17
1833 2031 5.122519 TGATCTGTTCAAGTGTTACAGCAA 58.877 37.500 0.00 0.00 39.24 3.91
1834 2032 4.702831 TGATCTGTTCAAGTGTTACAGCA 58.297 39.130 0.00 0.00 39.24 4.41
1836 2034 7.063898 CCAGTATGATCTGTTCAAGTGTTACAG 59.936 40.741 0.00 0.00 39.69 2.74
1838 2036 6.874134 ACCAGTATGATCTGTTCAAGTGTTAC 59.126 38.462 0.00 0.00 39.69 2.50
1839 2037 7.004555 ACCAGTATGATCTGTTCAAGTGTTA 57.995 36.000 0.00 0.00 39.69 2.41
1863 2139 7.444183 GCTTGTTTGGATATACATAAGCCAGTA 59.556 37.037 15.86 0.00 0.00 2.74
1864 2140 6.263168 GCTTGTTTGGATATACATAAGCCAGT 59.737 38.462 15.86 0.00 0.00 4.00
1865 2141 6.262944 TGCTTGTTTGGATATACATAAGCCAG 59.737 38.462 20.53 1.62 30.67 4.85
1866 2142 6.125719 TGCTTGTTTGGATATACATAAGCCA 58.874 36.000 20.53 11.51 30.67 4.75
1867 2143 6.294176 CCTGCTTGTTTGGATATACATAAGCC 60.294 42.308 20.53 9.89 30.67 4.35
1868 2144 6.263168 ACCTGCTTGTTTGGATATACATAAGC 59.737 38.462 18.26 18.26 31.78 3.09
1869 2145 7.498900 TGACCTGCTTGTTTGGATATACATAAG 59.501 37.037 0.00 0.00 0.00 1.73
1870 2146 7.282224 GTGACCTGCTTGTTTGGATATACATAA 59.718 37.037 0.00 0.00 0.00 1.90
1884 2160 0.546122 TGTCTTGGTGACCTGCTTGT 59.454 50.000 2.11 0.00 44.75 3.16
1905 2181 1.063649 GCTGATGATGCTGGTTGCG 59.936 57.895 0.00 0.00 46.63 4.85
1938 2250 8.635765 TGATAAATAAATTGGCTGTCTATCCC 57.364 34.615 0.00 0.00 0.00 3.85
1966 2649 4.872664 AGTGTTAGCTCATATAAGTCGGC 58.127 43.478 0.00 0.00 0.00 5.54
2006 2689 1.201647 CCAAGAATCAGCTGTTGCCAG 59.798 52.381 14.67 0.00 41.91 4.85
2012 2695 1.627329 TCAGAGCCAAGAATCAGCTGT 59.373 47.619 14.67 0.00 36.87 4.40
2013 2696 2.398252 TCAGAGCCAAGAATCAGCTG 57.602 50.000 7.63 7.63 36.87 4.24
2026 2709 3.397482 AGTTGTGAGTTGACATCAGAGC 58.603 45.455 0.00 0.00 0.00 4.09
2030 2713 4.021456 ACGGATAGTTGTGAGTTGACATCA 60.021 41.667 0.00 0.00 0.00 3.07
2034 2717 4.151867 GGAAACGGATAGTTGTGAGTTGAC 59.848 45.833 0.00 0.00 43.37 3.18
2036 2719 4.062293 TGGAAACGGATAGTTGTGAGTTG 58.938 43.478 0.00 0.00 43.37 3.16
2037 2720 4.039973 TCTGGAAACGGATAGTTGTGAGTT 59.960 41.667 0.00 0.00 43.37 3.01
2038 2721 3.576982 TCTGGAAACGGATAGTTGTGAGT 59.423 43.478 0.00 0.00 43.37 3.41
2039 2722 4.188247 TCTGGAAACGGATAGTTGTGAG 57.812 45.455 0.00 0.00 43.37 3.51
2111 2826 3.326880 GGAGGGAATGTGGGTATATTCGT 59.673 47.826 0.00 0.00 35.84 3.85
2152 2868 1.144057 GATCACCGTGCCCTCGAAT 59.856 57.895 0.00 0.00 0.00 3.34
2158 2876 2.125106 GAGTGGATCACCGTGCCC 60.125 66.667 0.00 0.00 39.42 5.36
2337 3084 5.470098 TCTGAAACCTTCTTCCTTTTGATCG 59.530 40.000 0.00 0.00 0.00 3.69
2355 3102 3.054728 TGACCTCAGTGTTGGTTCTGAAA 60.055 43.478 10.85 0.00 39.67 2.69
2362 3109 6.139671 AGATATATCTGACCTCAGTGTTGGT 58.860 40.000 14.60 9.65 44.12 3.67
2599 3443 0.036875 GGAACTGCTAGTGGCCAGTT 59.963 55.000 20.55 12.27 41.38 3.16
2612 3456 3.070446 TGGTGTGGTACAAGTAGGAACTG 59.930 47.826 0.00 0.00 44.16 3.16
2624 3468 0.032952 TTGCGAGAGTGGTGTGGTAC 59.967 55.000 0.00 0.00 0.00 3.34
2640 3484 9.793252 ACAAATTGATGATCTGTATTTACTTGC 57.207 29.630 0.00 0.00 0.00 4.01
2688 3532 5.958380 TCTCTGATCAGGTAGGTGTGTATTT 59.042 40.000 22.42 0.00 0.00 1.40
2693 3537 3.069300 CCATCTCTGATCAGGTAGGTGTG 59.931 52.174 22.42 9.92 0.00 3.82
2754 3598 1.416401 CCGTGCTTATCCATGGGTACT 59.584 52.381 13.02 0.00 38.07 2.73
2757 3601 1.152963 GCCGTGCTTATCCATGGGT 60.153 57.895 13.02 7.52 41.29 4.51
2784 3628 1.512926 CCTGGAAGAAACTGTGGTCG 58.487 55.000 0.00 0.00 34.07 4.79
2937 3783 1.001633 ACCACGTCGCTCTTTATTGGT 59.998 47.619 0.00 0.00 0.00 3.67
2940 3786 2.736144 TGACCACGTCGCTCTTTATT 57.264 45.000 0.00 0.00 34.95 1.40
3339 5932 4.911754 CGCAAGATCGACGGAAGTATTCG 61.912 52.174 0.00 0.00 44.58 3.34
3568 10229 8.998989 CATTTAATTTGTACAATAGTCAGCACG 58.001 33.333 9.56 0.00 0.00 5.34
3588 10249 9.261180 CCGAAGAGCTTATTCTATGACATTTAA 57.739 33.333 9.98 0.00 0.00 1.52
3630 10291 3.817647 GCATCTATTTAGGAACAGGGCAG 59.182 47.826 0.00 0.00 0.00 4.85
3648 10309 1.242076 AACACCTGACTTGCTGCATC 58.758 50.000 1.84 0.00 0.00 3.91
3682 10345 1.938585 TCCTGGGAGGACAGTAACAG 58.061 55.000 0.00 0.00 40.06 3.16
3767 10433 2.002586 CGCACATAGTTCACCAGGAAG 58.997 52.381 0.00 0.00 35.82 3.46
3773 10439 1.368641 TGATGCGCACATAGTTCACC 58.631 50.000 14.90 0.00 36.35 4.02
3774 10440 2.476185 GGTTGATGCGCACATAGTTCAC 60.476 50.000 14.90 6.93 36.35 3.18
3787 10453 1.308069 ACGGCATGTCAGGTTGATGC 61.308 55.000 0.00 0.00 33.03 3.91
3839 10513 8.567285 AAGTTAATTCTGAATAGTGTTGGGAG 57.433 34.615 2.85 0.00 0.00 4.30
3887 10801 2.483889 GCTAAAGATCCGGGTTCAGAGG 60.484 54.545 0.00 0.00 0.00 3.69
3929 10843 4.013050 GGGAATCCCTTGAAAGAGACAAG 58.987 47.826 11.95 0.00 41.34 3.16
4006 10920 1.134220 TCTTTTGGACACCTCACGCTT 60.134 47.619 0.00 0.00 0.00 4.68
4014 10928 1.876156 CAGAGCAGTCTTTTGGACACC 59.124 52.381 0.00 0.00 46.72 4.16
4016 10930 3.558931 TTCAGAGCAGTCTTTTGGACA 57.441 42.857 0.00 0.00 46.72 4.02
4041 10955 4.039004 AGCATCATCTAGCTGGACAGTTAG 59.961 45.833 14.67 14.67 41.70 2.34
4215 11159 6.536941 GGACTGCTCCAGTAAATCTAAAGAAG 59.463 42.308 0.00 0.00 45.44 2.85
4295 11239 7.464358 CATGTAGAGTTAACTTTGCACATACC 58.536 38.462 17.16 0.00 0.00 2.73
4298 11242 5.106157 GGCATGTAGAGTTAACTTTGCACAT 60.106 40.000 17.16 15.62 32.10 3.21
4300 11244 4.215399 TGGCATGTAGAGTTAACTTTGCAC 59.785 41.667 17.16 7.47 32.10 4.57
4383 11331 2.037772 ACACACTGGGAGTCACTGAATC 59.962 50.000 6.24 0.00 0.00 2.52
4461 11424 3.081804 GTTTATTCCTGTGACCCTGTGG 58.918 50.000 0.00 0.00 37.80 4.17
4464 11427 3.433306 TGGTTTATTCCTGTGACCCTG 57.567 47.619 0.00 0.00 0.00 4.45
4527 11506 3.395607 CTGGATGGGTTGGATCTATTGGA 59.604 47.826 0.00 0.00 0.00 3.53
4532 11511 3.706389 TCTCTGGATGGGTTGGATCTA 57.294 47.619 0.00 0.00 0.00 1.98
4570 11568 5.163447 TGGAGAGGAAACGGTGTCTATTATG 60.163 44.000 0.00 0.00 0.00 1.90
4583 11581 2.100087 GAGTCGAGGATGGAGAGGAAAC 59.900 54.545 0.00 0.00 0.00 2.78
4600 11598 4.398044 CAGAGTTCTGTCTAGGAAGGAGTC 59.602 50.000 0.91 0.00 39.09 3.36
4637 11635 2.030185 GTCACGCTCTTCCTGTCTGTTA 60.030 50.000 0.00 0.00 0.00 2.41
4640 11638 0.730834 CGTCACGCTCTTCCTGTCTG 60.731 60.000 0.00 0.00 0.00 3.51
4715 11903 2.746277 GGGGTCAAACTCGCGCAT 60.746 61.111 8.75 0.00 0.00 4.73
4731 11919 3.981071 TGAACTTGATACACCTGAGGG 57.019 47.619 2.38 0.00 38.88 4.30
4763 11951 3.761897 CACCAAGGTATTCAACTCCCAA 58.238 45.455 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.