Multiple sequence alignment - TraesCS5B01G349700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G349700 chr5B 100.000 2640 0 0 1 2640 530940831 530938192 0.000000e+00 4876
1 TraesCS5B01G349700 chr5B 94.773 2181 64 14 1 2150 464634106 464636267 0.000000e+00 3350
2 TraesCS5B01G349700 chr5B 98.630 73 1 0 2568 2640 454663464 454663536 2.130000e-26 130
3 TraesCS5B01G349700 chr7B 96.901 2646 75 4 1 2640 235458094 235455450 0.000000e+00 4425
4 TraesCS5B01G349700 chr7B 96.818 1980 60 3 663 2640 130334623 130336601 0.000000e+00 3304
5 TraesCS5B01G349700 chr7B 94.456 1966 78 23 1 1954 687040622 687042568 0.000000e+00 2998
6 TraesCS5B01G349700 chr7B 91.010 2069 138 33 551 2573 27327125 27329191 0.000000e+00 2747
7 TraesCS5B01G349700 chr2B 93.897 2671 111 18 1 2640 563917140 563914491 0.000000e+00 3982
8 TraesCS5B01G349700 chr2B 95.546 2133 82 6 512 2640 717652572 717654695 0.000000e+00 3400
9 TraesCS5B01G349700 chr2B 91.768 413 28 5 1702 2114 42195132 42195538 1.060000e-158 569
10 TraesCS5B01G349700 chr1B 95.681 2130 82 5 512 2640 550439578 550437458 0.000000e+00 3415
11 TraesCS5B01G349700 chr1B 96.537 722 25 0 1919 2640 357900183 357899462 0.000000e+00 1195
12 TraesCS5B01G349700 chr6B 94.059 2104 96 11 551 2640 114144287 114142199 0.000000e+00 3166
13 TraesCS5B01G349700 chr6B 93.302 2135 96 12 551 2640 650646154 650644022 0.000000e+00 3107
14 TraesCS5B01G349700 chr4B 97.544 1751 41 2 1 1750 402787203 402785454 0.000000e+00 2994
15 TraesCS5B01G349700 chr3B 90.643 887 70 11 1702 2586 28618662 28619537 0.000000e+00 1166


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G349700 chr5B 530938192 530940831 2639 True 4876 4876 100.000 1 2640 1 chr5B.!!$R1 2639
1 TraesCS5B01G349700 chr5B 464634106 464636267 2161 False 3350 3350 94.773 1 2150 1 chr5B.!!$F2 2149
2 TraesCS5B01G349700 chr7B 235455450 235458094 2644 True 4425 4425 96.901 1 2640 1 chr7B.!!$R1 2639
3 TraesCS5B01G349700 chr7B 130334623 130336601 1978 False 3304 3304 96.818 663 2640 1 chr7B.!!$F2 1977
4 TraesCS5B01G349700 chr7B 687040622 687042568 1946 False 2998 2998 94.456 1 1954 1 chr7B.!!$F3 1953
5 TraesCS5B01G349700 chr7B 27327125 27329191 2066 False 2747 2747 91.010 551 2573 1 chr7B.!!$F1 2022
6 TraesCS5B01G349700 chr2B 563914491 563917140 2649 True 3982 3982 93.897 1 2640 1 chr2B.!!$R1 2639
7 TraesCS5B01G349700 chr2B 717652572 717654695 2123 False 3400 3400 95.546 512 2640 1 chr2B.!!$F2 2128
8 TraesCS5B01G349700 chr1B 550437458 550439578 2120 True 3415 3415 95.681 512 2640 1 chr1B.!!$R2 2128
9 TraesCS5B01G349700 chr1B 357899462 357900183 721 True 1195 1195 96.537 1919 2640 1 chr1B.!!$R1 721
10 TraesCS5B01G349700 chr6B 114142199 114144287 2088 True 3166 3166 94.059 551 2640 1 chr6B.!!$R1 2089
11 TraesCS5B01G349700 chr6B 650644022 650646154 2132 True 3107 3107 93.302 551 2640 1 chr6B.!!$R2 2089
12 TraesCS5B01G349700 chr4B 402785454 402787203 1749 True 2994 2994 97.544 1 1750 1 chr4B.!!$R1 1749
13 TraesCS5B01G349700 chr3B 28618662 28619537 875 False 1166 1166 90.643 1702 2586 1 chr3B.!!$F1 884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 828 0.96637 GCTAGAGGTGGTGGTCGAGT 60.966 60.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2376 0.03601 GGTGTCTGGGTGTCCATCAG 60.036 60.0 0.0 0.0 43.11 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 4.796606 AGTAAGTATCATTGGCCATGCTT 58.203 39.130 6.09 9.61 32.13 3.91
340 341 2.906389 GGTGATATGGATGACCTGGCTA 59.094 50.000 0.00 0.00 36.47 3.93
432 433 2.926242 GGTGAAGGGGGACACCGA 60.926 66.667 0.00 0.00 45.16 4.69
433 434 2.298661 GGTGAAGGGGGACACCGAT 61.299 63.158 0.00 0.00 45.16 4.18
434 435 1.078426 GTGAAGGGGGACACCGATG 60.078 63.158 0.00 0.00 41.60 3.84
436 437 2.204090 AAGGGGGACACCGATGGT 60.204 61.111 0.00 0.00 41.60 3.55
623 624 2.719739 TCGTAGAGGGAGTACAAGTGG 58.280 52.381 0.00 0.00 0.00 4.00
626 627 4.012374 CGTAGAGGGAGTACAAGTGGTAA 58.988 47.826 0.00 0.00 32.72 2.85
667 668 1.072331 CAAGTGCTAGAGGTGGTGGTT 59.928 52.381 0.00 0.00 0.00 3.67
761 828 0.966370 GCTAGAGGTGGTGGTCGAGT 60.966 60.000 0.00 0.00 0.00 4.18
875 942 4.338400 GGCCTTCGGTTATTTGCTTAATCT 59.662 41.667 0.00 0.00 0.00 2.40
992 1059 6.972328 TGTCTTGTGCTAACAATTGTTCTTTC 59.028 34.615 26.46 15.73 45.12 2.62
1239 1306 1.735198 TCGAAGGCCAACTAACGCG 60.735 57.895 5.01 3.53 0.00 6.01
1334 1402 9.528489 ACAAAAACATGGTTTATATGTAGTCCT 57.472 29.630 9.62 0.00 37.77 3.85
1503 1571 2.023771 CTCGTGAGCGCAAGAAGCA 61.024 57.895 11.47 0.00 46.13 3.91
1662 1731 0.536460 AATGGAAAGGCACCGACGTT 60.536 50.000 0.00 0.00 0.00 3.99
1674 1743 3.507786 CACCGACGTTGATGATGAACTA 58.492 45.455 3.74 0.00 0.00 2.24
1675 1744 3.303495 CACCGACGTTGATGATGAACTAC 59.697 47.826 3.74 0.00 0.00 2.73
1872 2015 5.299279 ACAGTGTTTGCTACAAGTTGCTAAT 59.701 36.000 1.81 0.00 38.80 1.73
1911 2055 3.758554 AGACAGAAGTGTGTGCAAAAACT 59.241 39.130 0.00 0.00 36.88 2.66
1984 2128 0.321671 GCAGGTGACCAGACAAGCTA 59.678 55.000 3.63 0.00 0.00 3.32
2030 2293 2.671070 CCAAGGTCCATGGCGTCT 59.329 61.111 6.96 0.87 0.00 4.18
2031 2294 1.746615 CCAAGGTCCATGGCGTCTG 60.747 63.158 6.96 1.76 0.00 3.51
2032 2295 2.045926 AAGGTCCATGGCGTCTGC 60.046 61.111 6.96 0.00 41.71 4.26
2042 2305 2.512515 GCGTCTGCCTCCCACATC 60.513 66.667 0.00 0.00 33.98 3.06
2043 2306 2.187946 CGTCTGCCTCCCACATCC 59.812 66.667 0.00 0.00 0.00 3.51
2044 2307 2.659063 CGTCTGCCTCCCACATCCA 61.659 63.158 0.00 0.00 0.00 3.41
2045 2308 1.222936 GTCTGCCTCCCACATCCAG 59.777 63.158 0.00 0.00 0.00 3.86
2046 2309 1.080907 TCTGCCTCCCACATCCAGA 59.919 57.895 0.00 0.00 0.00 3.86
2047 2310 1.222936 CTGCCTCCCACATCCAGAC 59.777 63.158 0.00 0.00 0.00 3.51
2048 2311 2.187946 GCCTCCCACATCCAGACG 59.812 66.667 0.00 0.00 0.00 4.18
2049 2312 2.187946 CCTCCCACATCCAGACGC 59.812 66.667 0.00 0.00 0.00 5.19
2050 2313 2.187946 CTCCCACATCCAGACGCC 59.812 66.667 0.00 0.00 0.00 5.68
2051 2314 2.606213 TCCCACATCCAGACGCCA 60.606 61.111 0.00 0.00 0.00 5.69
2052 2315 2.124983 CCCACATCCAGACGCCAG 60.125 66.667 0.00 0.00 0.00 4.85
2053 2316 2.124983 CCACATCCAGACGCCAGG 60.125 66.667 0.00 0.00 0.00 4.45
2054 2317 2.124983 CACATCCAGACGCCAGGG 60.125 66.667 0.00 0.00 0.00 4.45
2055 2318 2.284625 ACATCCAGACGCCAGGGA 60.285 61.111 0.00 0.00 34.70 4.20
2056 2319 2.187946 CATCCAGACGCCAGGGAC 59.812 66.667 0.00 0.00 32.60 4.46
2057 2320 3.083997 ATCCAGACGCCAGGGACC 61.084 66.667 0.00 0.00 32.60 4.46
2071 2334 4.459089 GACCCTGGCGTCTGGCTC 62.459 72.222 7.54 0.00 42.94 4.70
2079 2342 2.415010 CGTCTGGCTCGCTATGCT 59.585 61.111 0.00 0.00 0.00 3.79
2080 2343 1.659954 CGTCTGGCTCGCTATGCTC 60.660 63.158 0.00 0.00 0.00 4.26
2081 2344 1.659954 GTCTGGCTCGCTATGCTCG 60.660 63.158 0.00 0.00 0.00 5.03
2082 2345 3.034923 CTGGCTCGCTATGCTCGC 61.035 66.667 0.00 0.00 0.00 5.03
2095 2358 4.056125 CTCGCGCAGGTGACCAGA 62.056 66.667 8.75 0.00 0.00 3.86
2096 2359 4.357947 TCGCGCAGGTGACCAGAC 62.358 66.667 8.75 0.00 0.00 3.51
2097 2360 4.662961 CGCGCAGGTGACCAGACA 62.663 66.667 8.75 0.00 0.00 3.41
2098 2361 2.280797 GCGCAGGTGACCAGACAA 60.281 61.111 3.63 0.00 0.00 3.18
2099 2362 2.320587 GCGCAGGTGACCAGACAAG 61.321 63.158 3.63 0.00 0.00 3.16
2100 2363 1.367471 CGCAGGTGACCAGACAAGA 59.633 57.895 3.63 0.00 0.00 3.02
2101 2364 0.036952 CGCAGGTGACCAGACAAGAT 60.037 55.000 3.63 0.00 0.00 2.40
2102 2365 1.446907 GCAGGTGACCAGACAAGATG 58.553 55.000 3.63 0.00 0.00 2.90
2103 2366 1.271054 GCAGGTGACCAGACAAGATGT 60.271 52.381 3.63 0.00 0.00 3.06
2114 2377 3.393089 GACAAGATGTCTGGTGTGTCT 57.607 47.619 3.31 0.00 43.73 3.41
2115 2378 3.062763 GACAAGATGTCTGGTGTGTCTG 58.937 50.000 3.31 0.00 43.73 3.51
2116 2379 2.700371 ACAAGATGTCTGGTGTGTCTGA 59.300 45.455 0.00 0.00 0.00 3.27
2117 2380 3.326006 ACAAGATGTCTGGTGTGTCTGAT 59.674 43.478 0.00 0.00 0.00 2.90
2118 2381 3.606595 AGATGTCTGGTGTGTCTGATG 57.393 47.619 0.00 0.00 0.00 3.07
2119 2382 2.235650 AGATGTCTGGTGTGTCTGATGG 59.764 50.000 0.00 0.00 0.00 3.51
2120 2383 1.715785 TGTCTGGTGTGTCTGATGGA 58.284 50.000 0.00 0.00 0.00 3.41
2121 2384 1.344438 TGTCTGGTGTGTCTGATGGAC 59.656 52.381 0.00 0.00 44.70 4.02
2134 2397 4.074854 TGGACACCCAGACACCAA 57.925 55.556 0.00 0.00 37.58 3.67
2135 2398 1.836391 TGGACACCCAGACACCAAG 59.164 57.895 0.00 0.00 37.58 3.61
2136 2399 1.073199 GGACACCCAGACACCAAGG 59.927 63.158 0.00 0.00 0.00 3.61
2137 2400 1.705997 GGACACCCAGACACCAAGGT 61.706 60.000 0.00 0.00 0.00 3.50
2138 2401 0.250338 GACACCCAGACACCAAGGTC 60.250 60.000 0.00 0.00 38.08 3.85
2139 2402 1.073199 CACCCAGACACCAAGGTCC 59.927 63.158 0.00 0.00 38.59 4.46
2140 2403 1.385347 ACCCAGACACCAAGGTCCA 60.385 57.895 0.00 0.00 38.59 4.02
2141 2404 0.772124 ACCCAGACACCAAGGTCCAT 60.772 55.000 0.00 0.00 38.59 3.41
2142 2405 0.405585 CCCAGACACCAAGGTCCATT 59.594 55.000 0.00 0.00 38.59 3.16
2143 2406 1.538047 CCAGACACCAAGGTCCATTG 58.462 55.000 0.00 0.00 38.59 2.82
2144 2407 0.883833 CAGACACCAAGGTCCATTGC 59.116 55.000 0.00 0.00 38.59 3.56
2145 2408 0.606401 AGACACCAAGGTCCATTGCG 60.606 55.000 0.00 0.00 38.59 4.85
2146 2409 0.889186 GACACCAAGGTCCATTGCGT 60.889 55.000 0.00 0.00 0.00 5.24
2424 2924 1.684386 CTCACCTCTAGCCCTGCCAG 61.684 65.000 0.00 0.00 0.00 4.85
2531 3040 6.853720 TCGAGACTAGAAGGTAAATCAACTG 58.146 40.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 1.431440 GCCGCCGTTATCAAATGCA 59.569 52.632 0.00 0.00 0.00 3.96
340 341 6.392354 CAAATTGTTTCATGCCAGTGTATCT 58.608 36.000 0.00 0.00 0.00 1.98
430 431 3.770263 ATTCTTGCATGTTCACCATCG 57.230 42.857 0.00 0.00 0.00 3.84
431 432 6.441093 TCTTATTCTTGCATGTTCACCATC 57.559 37.500 0.00 0.00 0.00 3.51
432 433 6.839124 TTCTTATTCTTGCATGTTCACCAT 57.161 33.333 0.00 0.00 0.00 3.55
433 434 6.647334 TTTCTTATTCTTGCATGTTCACCA 57.353 33.333 0.00 0.00 0.00 4.17
434 435 6.366061 GGTTTTCTTATTCTTGCATGTTCACC 59.634 38.462 0.00 0.00 0.00 4.02
436 437 7.048629 TGGTTTTCTTATTCTTGCATGTTCA 57.951 32.000 0.00 0.00 0.00 3.18
493 494 1.697432 TCTTCCACCTCGTTCACCATT 59.303 47.619 0.00 0.00 0.00 3.16
623 624 0.320697 AGCTCGACCACCACCTTTAC 59.679 55.000 0.00 0.00 0.00 2.01
626 627 1.889530 GCTAGCTCGACCACCACCTT 61.890 60.000 7.70 0.00 0.00 3.50
667 668 1.202687 ACTAGCACTTGTGCTTGCTCA 60.203 47.619 29.37 13.06 46.31 4.26
761 828 1.550524 CACCTCTAGCACTTGTGCCTA 59.449 52.381 20.39 11.79 34.90 3.93
992 1059 1.602311 GGATGAAGCCATGCCTACAG 58.398 55.000 0.00 0.00 35.39 2.74
1280 1347 8.314021 AGACATATGAGTGACAACTTGTTGATA 58.686 33.333 18.82 6.64 36.52 2.15
1503 1571 1.965754 GCGTGCCCTCTCTTCCTCAT 61.966 60.000 0.00 0.00 0.00 2.90
1662 1731 7.482169 ACAAAGTCTAGGTAGTTCATCATCA 57.518 36.000 0.00 0.00 0.00 3.07
1872 2015 9.921637 ACTTCTGTCTTTTGTTAATGTTTTTGA 57.078 25.926 0.00 0.00 0.00 2.69
1911 2055 1.841556 GTCTGGGTGTGGACCTGGA 60.842 63.158 0.00 0.00 42.66 3.86
2029 2292 1.222936 GTCTGGATGTGGGAGGCAG 59.777 63.158 0.00 0.00 0.00 4.85
2030 2293 2.659063 CGTCTGGATGTGGGAGGCA 61.659 63.158 0.00 0.00 0.00 4.75
2031 2294 2.187946 CGTCTGGATGTGGGAGGC 59.812 66.667 0.00 0.00 0.00 4.70
2032 2295 2.187946 GCGTCTGGATGTGGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
2033 2296 2.187946 GGCGTCTGGATGTGGGAG 59.812 66.667 0.00 0.00 0.00 4.30
2034 2297 2.606213 TGGCGTCTGGATGTGGGA 60.606 61.111 0.00 0.00 0.00 4.37
2035 2298 2.124983 CTGGCGTCTGGATGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
2036 2299 2.124983 CCTGGCGTCTGGATGTGG 60.125 66.667 7.22 0.00 34.32 4.17
2037 2300 2.124983 CCCTGGCGTCTGGATGTG 60.125 66.667 15.35 0.00 34.32 3.21
2038 2301 2.284625 TCCCTGGCGTCTGGATGT 60.285 61.111 15.35 0.00 34.32 3.06
2039 2302 2.187946 GTCCCTGGCGTCTGGATG 59.812 66.667 15.35 0.00 34.32 3.51
2040 2303 3.083997 GGTCCCTGGCGTCTGGAT 61.084 66.667 15.35 0.00 34.32 3.41
2054 2317 4.459089 GAGCCAGACGCCAGGGTC 62.459 72.222 6.74 6.74 44.14 4.46
2062 2325 1.659954 GAGCATAGCGAGCCAGACG 60.660 63.158 0.00 0.00 0.00 4.18
2063 2326 1.659954 CGAGCATAGCGAGCCAGAC 60.660 63.158 0.00 0.00 0.00 3.51
2064 2327 2.724377 CGAGCATAGCGAGCCAGA 59.276 61.111 0.00 0.00 0.00 3.86
2065 2328 3.034923 GCGAGCATAGCGAGCCAG 61.035 66.667 0.00 0.00 32.00 4.85
2078 2341 4.056125 TCTGGTCACCTGCGCGAG 62.056 66.667 12.10 4.18 0.00 5.03
2079 2342 4.357947 GTCTGGTCACCTGCGCGA 62.358 66.667 12.10 0.00 0.00 5.87
2080 2343 4.662961 TGTCTGGTCACCTGCGCG 62.663 66.667 0.00 0.00 0.00 6.86
2081 2344 2.280797 TTGTCTGGTCACCTGCGC 60.281 61.111 0.00 0.00 0.00 6.09
2082 2345 0.036952 ATCTTGTCTGGTCACCTGCG 60.037 55.000 0.00 0.00 0.00 5.18
2083 2346 1.271054 ACATCTTGTCTGGTCACCTGC 60.271 52.381 0.00 0.00 0.00 4.85
2084 2347 2.693069 GACATCTTGTCTGGTCACCTG 58.307 52.381 0.00 0.00 43.73 4.00
2095 2358 2.700371 TCAGACACACCAGACATCTTGT 59.300 45.455 0.00 0.00 0.00 3.16
2096 2359 3.391506 TCAGACACACCAGACATCTTG 57.608 47.619 0.00 0.00 0.00 3.02
2097 2360 3.307269 CCATCAGACACACCAGACATCTT 60.307 47.826 0.00 0.00 0.00 2.40
2098 2361 2.235650 CCATCAGACACACCAGACATCT 59.764 50.000 0.00 0.00 0.00 2.90
2099 2362 2.234661 TCCATCAGACACACCAGACATC 59.765 50.000 0.00 0.00 0.00 3.06
2100 2363 2.027745 GTCCATCAGACACACCAGACAT 60.028 50.000 0.00 0.00 45.55 3.06
2101 2364 1.344438 GTCCATCAGACACACCAGACA 59.656 52.381 0.00 0.00 45.55 3.41
2102 2365 2.086054 GTCCATCAGACACACCAGAC 57.914 55.000 0.00 0.00 45.55 3.51
2111 2374 3.842869 GTCTGGGTGTCCATCAGAC 57.157 57.895 13.81 13.81 46.66 3.51
2112 2375 0.976641 GTGTCTGGGTGTCCATCAGA 59.023 55.000 0.00 0.00 43.11 3.27
2113 2376 0.036010 GGTGTCTGGGTGTCCATCAG 60.036 60.000 0.00 0.00 43.11 2.90
2114 2377 0.766288 TGGTGTCTGGGTGTCCATCA 60.766 55.000 0.00 0.00 43.11 3.07
2115 2378 0.400213 TTGGTGTCTGGGTGTCCATC 59.600 55.000 0.00 0.00 43.11 3.51
2116 2379 0.401738 CTTGGTGTCTGGGTGTCCAT 59.598 55.000 0.00 0.00 43.11 3.41
2117 2380 1.705002 CCTTGGTGTCTGGGTGTCCA 61.705 60.000 0.00 0.00 41.58 4.02
2118 2381 1.073199 CCTTGGTGTCTGGGTGTCC 59.927 63.158 0.00 0.00 0.00 4.02
2119 2382 0.250338 GACCTTGGTGTCTGGGTGTC 60.250 60.000 0.00 0.00 32.39 3.67
2120 2383 1.705997 GGACCTTGGTGTCTGGGTGT 61.706 60.000 0.00 0.00 35.54 4.16
2121 2384 1.073199 GGACCTTGGTGTCTGGGTG 59.927 63.158 0.00 0.00 35.54 4.61
2122 2385 0.772124 ATGGACCTTGGTGTCTGGGT 60.772 55.000 0.00 0.00 35.54 4.51
2123 2386 0.405585 AATGGACCTTGGTGTCTGGG 59.594 55.000 0.00 0.00 35.54 4.45
2124 2387 1.538047 CAATGGACCTTGGTGTCTGG 58.462 55.000 0.00 0.00 35.54 3.86
2125 2388 0.883833 GCAATGGACCTTGGTGTCTG 59.116 55.000 0.00 0.00 35.54 3.51
2126 2389 0.606401 CGCAATGGACCTTGGTGTCT 60.606 55.000 0.00 0.00 35.54 3.41
2127 2390 0.889186 ACGCAATGGACCTTGGTGTC 60.889 55.000 0.00 0.00 34.42 3.67
2128 2391 0.889186 GACGCAATGGACCTTGGTGT 60.889 55.000 0.61 0.61 0.00 4.16
2129 2392 0.606401 AGACGCAATGGACCTTGGTG 60.606 55.000 0.00 0.00 0.00 4.17
2130 2393 0.606401 CAGACGCAATGGACCTTGGT 60.606 55.000 0.00 0.00 0.00 3.67
2131 2394 1.926511 GCAGACGCAATGGACCTTGG 61.927 60.000 0.00 0.00 38.36 3.61
2132 2395 1.503542 GCAGACGCAATGGACCTTG 59.496 57.895 0.00 0.00 38.36 3.61
2133 2396 1.675641 GGCAGACGCAATGGACCTT 60.676 57.895 0.00 0.00 41.24 3.50
2134 2397 2.045926 GGCAGACGCAATGGACCT 60.046 61.111 0.00 0.00 41.24 3.85
2135 2398 2.045926 AGGCAGACGCAATGGACC 60.046 61.111 0.00 0.00 41.24 4.46
2136 2399 2.109126 GGAGGCAGACGCAATGGAC 61.109 63.158 0.00 0.00 41.24 4.02
2137 2400 2.268920 GGAGGCAGACGCAATGGA 59.731 61.111 0.00 0.00 41.24 3.41
2138 2401 2.825836 GGGAGGCAGACGCAATGG 60.826 66.667 0.00 0.00 41.24 3.16
2139 2402 2.046023 TGGGAGGCAGACGCAATG 60.046 61.111 0.00 0.00 41.24 2.82
2140 2403 2.045926 GTGGGAGGCAGACGCAAT 60.046 61.111 0.00 0.00 41.24 3.56
2141 2404 3.555324 TGTGGGAGGCAGACGCAA 61.555 61.111 0.00 0.00 41.24 4.85
2142 2405 4.314440 GTGTGGGAGGCAGACGCA 62.314 66.667 0.00 0.00 41.24 5.24
2144 2407 4.394712 GGGTGTGGGAGGCAGACG 62.395 72.222 0.00 0.00 0.00 4.18
2145 2408 3.249189 TGGGTGTGGGAGGCAGAC 61.249 66.667 0.00 0.00 0.00 3.51
2146 2409 2.930019 CTGGGTGTGGGAGGCAGA 60.930 66.667 0.00 0.00 0.00 4.26
2424 2924 1.142748 CTGGATGAGGGAGTGACGC 59.857 63.158 0.00 0.00 0.00 5.19
2563 3072 7.541162 ACAAACTAGGGTTTTCACAAAAGTAC 58.459 34.615 0.00 0.00 42.96 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.