Multiple sequence alignment - TraesCS5B01G349600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G349600 chr5B 100.000 2216 0 0 1 2216 530911448 530913663 0.000000e+00 4093
1 TraesCS5B01G349600 chr5B 93.927 247 15 0 1 247 324234210 324234456 7.470000e-100 374
2 TraesCS5B01G349600 chr5B 93.548 248 16 0 1 248 376320876 376320629 9.670000e-99 370
3 TraesCS5B01G349600 chr5B 93.548 248 16 0 1 248 530882459 530882706 9.670000e-99 370
4 TraesCS5B01G349600 chr5D 98.084 783 11 4 540 1320 503217495 503216715 0.000000e+00 1360
5 TraesCS5B01G349600 chr5D 91.992 512 26 2 1720 2216 436767355 436767866 0.000000e+00 704
6 TraesCS5B01G349600 chr5D 91.837 294 9 8 1321 1600 436766874 436767166 1.590000e-106 396
7 TraesCS5B01G349600 chr5D 93.333 210 6 5 339 540 436766663 436766872 9.940000e-79 303
8 TraesCS5B01G349600 chr5D 95.050 101 5 0 1615 1715 436767151 436767251 2.280000e-35 159
9 TraesCS5B01G349600 chrUn 97.959 784 10 6 540 1320 93410354 93411134 0.000000e+00 1354
10 TraesCS5B01G349600 chrUn 97.832 784 12 5 540 1320 216519325 216520106 0.000000e+00 1349
11 TraesCS5B01G349600 chrUn 97.573 783 15 4 540 1320 396206083 396206863 0.000000e+00 1338
12 TraesCS5B01G349600 chr6D 97.959 784 11 5 540 1320 168254203 168253422 0.000000e+00 1354
13 TraesCS5B01G349600 chr6D 97.318 783 15 5 540 1320 168250815 168250037 0.000000e+00 1325
14 TraesCS5B01G349600 chr2D 97.959 784 11 5 540 1320 272794616 272795397 0.000000e+00 1354
15 TraesCS5B01G349600 chr6A 97.570 782 17 2 540 1320 260117003 260117783 0.000000e+00 1338
16 TraesCS5B01G349600 chr3B 97.449 784 14 6 540 1320 201526301 201525521 0.000000e+00 1332
17 TraesCS5B01G349600 chr3B 93.307 254 15 2 1 252 574383499 574383246 7.470000e-100 374
18 TraesCS5B01G349600 chr3B 81.206 282 46 7 22 299 10550590 10550868 1.030000e-53 220
19 TraesCS5B01G349600 chr3B 88.172 93 9 2 248 338 828175714 828175622 2.330000e-20 110
20 TraesCS5B01G349600 chr2B 94.355 248 14 0 1 248 495453676 495453923 4.470000e-102 381
21 TraesCS5B01G349600 chr1B 93.281 253 16 1 1 253 513018925 513019176 2.690000e-99 372
22 TraesCS5B01G349600 chr1B 88.421 95 9 2 248 340 35178870 35178964 1.800000e-21 113
23 TraesCS5B01G349600 chr7B 93.878 245 15 0 1 245 330776907 330777151 9.670000e-99 370
24 TraesCS5B01G349600 chr7B 93.574 249 14 2 1 248 625767597 625767350 9.670000e-99 370
25 TraesCS5B01G349600 chr6B 92.607 257 17 2 1 256 638313785 638314040 3.480000e-98 368
26 TraesCS5B01G349600 chr5A 83.984 256 33 5 1943 2195 552055671 552055921 2.840000e-59 239
27 TraesCS5B01G349600 chr5A 89.888 89 8 1 1926 2013 552055515 552055603 1.800000e-21 113
28 TraesCS5B01G349600 chr2A 80.282 284 47 8 22 300 713847702 713847981 2.880000e-49 206
29 TraesCS5B01G349600 chr2A 87.879 99 9 3 248 344 759251331 759251234 1.800000e-21 113
30 TraesCS5B01G349600 chr7D 90.816 98 6 3 247 341 127500371 127500468 6.420000e-26 128
31 TraesCS5B01G349600 chr7D 90.588 85 6 2 253 335 127673343 127673427 6.470000e-21 111
32 TraesCS5B01G349600 chr4B 86.458 96 10 3 249 341 667208205 667208110 3.890000e-18 102
33 TraesCS5B01G349600 chr3D 86.316 95 9 4 248 339 93601442 93601349 1.400000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G349600 chr5B 530911448 530913663 2215 False 4093.0 4093 100.0000 1 2216 1 chr5B.!!$F3 2215
1 TraesCS5B01G349600 chr5D 503216715 503217495 780 True 1360.0 1360 98.0840 540 1320 1 chr5D.!!$R1 780
2 TraesCS5B01G349600 chr5D 436766663 436767866 1203 False 390.5 704 93.0530 339 2216 4 chr5D.!!$F1 1877
3 TraesCS5B01G349600 chrUn 93410354 93411134 780 False 1354.0 1354 97.9590 540 1320 1 chrUn.!!$F1 780
4 TraesCS5B01G349600 chrUn 216519325 216520106 781 False 1349.0 1349 97.8320 540 1320 1 chrUn.!!$F2 780
5 TraesCS5B01G349600 chrUn 396206083 396206863 780 False 1338.0 1338 97.5730 540 1320 1 chrUn.!!$F3 780
6 TraesCS5B01G349600 chr6D 168250037 168254203 4166 True 1339.5 1354 97.6385 540 1320 2 chr6D.!!$R1 780
7 TraesCS5B01G349600 chr2D 272794616 272795397 781 False 1354.0 1354 97.9590 540 1320 1 chr2D.!!$F1 780
8 TraesCS5B01G349600 chr6A 260117003 260117783 780 False 1338.0 1338 97.5700 540 1320 1 chr6A.!!$F1 780
9 TraesCS5B01G349600 chr3B 201525521 201526301 780 True 1332.0 1332 97.4490 540 1320 1 chr3B.!!$R1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.03582 TCATAGTCCAACAACCCGGC 60.036 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 4827 0.178938 TGGTGCCACCCATGAACAAT 60.179 50.0 12.25 0.0 37.5 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.306472 TTGTGGCTAAACCCTTGAACT 57.694 42.857 0.00 0.00 37.83 3.01
21 22 2.858745 TGTGGCTAAACCCTTGAACTC 58.141 47.619 0.00 0.00 37.83 3.01
22 23 2.441750 TGTGGCTAAACCCTTGAACTCT 59.558 45.455 0.00 0.00 37.83 3.24
23 24 3.649023 TGTGGCTAAACCCTTGAACTCTA 59.351 43.478 0.00 0.00 37.83 2.43
24 25 4.103469 TGTGGCTAAACCCTTGAACTCTAA 59.897 41.667 0.00 0.00 37.83 2.10
25 26 5.067954 GTGGCTAAACCCTTGAACTCTAAA 58.932 41.667 0.00 0.00 37.83 1.85
26 27 5.048921 GTGGCTAAACCCTTGAACTCTAAAC 60.049 44.000 0.00 0.00 37.83 2.01
27 28 4.458295 GGCTAAACCCTTGAACTCTAAACC 59.542 45.833 0.00 0.00 0.00 3.27
28 29 4.458295 GCTAAACCCTTGAACTCTAAACCC 59.542 45.833 0.00 0.00 0.00 4.11
29 30 4.808767 AAACCCTTGAACTCTAAACCCT 57.191 40.909 0.00 0.00 0.00 4.34
30 31 4.808767 AACCCTTGAACTCTAAACCCTT 57.191 40.909 0.00 0.00 0.00 3.95
31 32 4.368565 ACCCTTGAACTCTAAACCCTTC 57.631 45.455 0.00 0.00 0.00 3.46
32 33 3.244457 ACCCTTGAACTCTAAACCCTTCG 60.244 47.826 0.00 0.00 0.00 3.79
33 34 3.335579 CCTTGAACTCTAAACCCTTCGG 58.664 50.000 0.00 0.00 0.00 4.30
47 48 5.541953 ACCCTTCGGTTTATATAGACACC 57.458 43.478 5.83 2.59 40.58 4.16
48 49 4.964262 ACCCTTCGGTTTATATAGACACCA 59.036 41.667 3.73 0.00 40.58 4.17
49 50 5.070047 ACCCTTCGGTTTATATAGACACCAG 59.930 44.000 3.73 0.00 40.58 4.00
50 51 5.510861 CCCTTCGGTTTATATAGACACCAGG 60.511 48.000 3.73 3.45 0.00 4.45
51 52 5.070047 CCTTCGGTTTATATAGACACCAGGT 59.930 44.000 3.73 0.00 0.00 4.00
52 53 5.524971 TCGGTTTATATAGACACCAGGTG 57.475 43.478 18.93 18.93 39.75 4.00
53 54 4.342951 TCGGTTTATATAGACACCAGGTGG 59.657 45.833 24.13 1.68 37.94 4.61
54 55 4.502604 CGGTTTATATAGACACCAGGTGGG 60.503 50.000 24.13 0.00 44.81 4.61
55 56 4.202430 GGTTTATATAGACACCAGGTGGGG 60.202 50.000 24.13 2.99 46.44 4.96
56 57 1.435256 ATATAGACACCAGGTGGGGC 58.565 55.000 24.13 12.32 44.30 5.80
57 58 0.341961 TATAGACACCAGGTGGGGCT 59.658 55.000 24.13 18.40 44.30 5.19
58 59 0.341961 ATAGACACCAGGTGGGGCTA 59.658 55.000 24.13 19.79 44.30 3.93
59 60 0.325296 TAGACACCAGGTGGGGCTAG 60.325 60.000 24.13 0.00 44.30 3.42
60 61 2.610859 ACACCAGGTGGGGCTAGG 60.611 66.667 24.13 0.00 44.30 3.02
61 62 3.411517 CACCAGGTGGGGCTAGGG 61.412 72.222 12.40 0.00 42.91 3.53
62 63 3.954981 ACCAGGTGGGGCTAGGGT 61.955 66.667 0.04 0.00 42.91 4.34
63 64 2.614013 CCAGGTGGGGCTAGGGTT 60.614 66.667 0.00 0.00 0.00 4.11
64 65 2.677228 CAGGTGGGGCTAGGGTTG 59.323 66.667 0.00 0.00 0.00 3.77
65 66 2.210102 AGGTGGGGCTAGGGTTGT 59.790 61.111 0.00 0.00 0.00 3.32
66 67 0.912487 CAGGTGGGGCTAGGGTTGTA 60.912 60.000 0.00 0.00 0.00 2.41
67 68 0.912968 AGGTGGGGCTAGGGTTGTAC 60.913 60.000 0.00 0.00 0.00 2.90
68 69 1.202769 GGTGGGGCTAGGGTTGTACA 61.203 60.000 0.00 0.00 0.00 2.90
69 70 0.694196 GTGGGGCTAGGGTTGTACAA 59.306 55.000 3.59 3.59 0.00 2.41
70 71 1.074244 GTGGGGCTAGGGTTGTACAAA 59.926 52.381 10.51 0.00 0.00 2.83
71 72 1.353022 TGGGGCTAGGGTTGTACAAAG 59.647 52.381 10.51 5.24 0.00 2.77
72 73 1.353358 GGGGCTAGGGTTGTACAAAGT 59.647 52.381 10.51 0.30 0.00 2.66
73 74 2.617276 GGGGCTAGGGTTGTACAAAGTC 60.617 54.545 10.51 5.45 0.00 3.01
74 75 2.039348 GGGCTAGGGTTGTACAAAGTCA 59.961 50.000 10.51 0.00 0.00 3.41
75 76 3.335579 GGCTAGGGTTGTACAAAGTCAG 58.664 50.000 10.51 6.98 0.00 3.51
76 77 3.244457 GGCTAGGGTTGTACAAAGTCAGT 60.244 47.826 10.51 0.00 0.00 3.41
77 78 4.386711 GCTAGGGTTGTACAAAGTCAGTT 58.613 43.478 10.51 0.00 0.00 3.16
78 79 5.511888 GGCTAGGGTTGTACAAAGTCAGTTA 60.512 44.000 10.51 0.00 0.00 2.24
79 80 5.407691 GCTAGGGTTGTACAAAGTCAGTTAC 59.592 44.000 10.51 0.00 0.00 2.50
80 81 5.362105 AGGGTTGTACAAAGTCAGTTACA 57.638 39.130 10.51 0.00 0.00 2.41
81 82 5.365619 AGGGTTGTACAAAGTCAGTTACAG 58.634 41.667 10.51 0.00 0.00 2.74
82 83 5.129815 AGGGTTGTACAAAGTCAGTTACAGA 59.870 40.000 10.51 0.00 0.00 3.41
83 84 5.465724 GGGTTGTACAAAGTCAGTTACAGAG 59.534 44.000 10.51 0.00 0.00 3.35
84 85 6.278363 GGTTGTACAAAGTCAGTTACAGAGA 58.722 40.000 10.51 0.00 0.00 3.10
85 86 6.759827 GGTTGTACAAAGTCAGTTACAGAGAA 59.240 38.462 10.51 0.00 0.00 2.87
86 87 7.279313 GGTTGTACAAAGTCAGTTACAGAGAAA 59.721 37.037 10.51 0.00 0.00 2.52
87 88 8.328864 GTTGTACAAAGTCAGTTACAGAGAAAG 58.671 37.037 10.51 0.00 0.00 2.62
88 89 6.984474 TGTACAAAGTCAGTTACAGAGAAAGG 59.016 38.462 0.00 0.00 0.00 3.11
89 90 6.235231 ACAAAGTCAGTTACAGAGAAAGGA 57.765 37.500 0.00 0.00 0.00 3.36
90 91 6.650120 ACAAAGTCAGTTACAGAGAAAGGAA 58.350 36.000 0.00 0.00 0.00 3.36
91 92 7.283329 ACAAAGTCAGTTACAGAGAAAGGAAT 58.717 34.615 0.00 0.00 0.00 3.01
92 93 7.442666 ACAAAGTCAGTTACAGAGAAAGGAATC 59.557 37.037 0.00 0.00 0.00 2.52
93 94 6.926630 AGTCAGTTACAGAGAAAGGAATCT 57.073 37.500 0.00 0.00 0.00 2.40
94 95 8.423906 AAGTCAGTTACAGAGAAAGGAATCTA 57.576 34.615 0.00 0.00 0.00 1.98
95 96 7.832769 AGTCAGTTACAGAGAAAGGAATCTAC 58.167 38.462 0.00 0.00 0.00 2.59
96 97 7.451877 AGTCAGTTACAGAGAAAGGAATCTACA 59.548 37.037 0.00 0.00 0.00 2.74
97 98 8.254508 GTCAGTTACAGAGAAAGGAATCTACAT 58.745 37.037 0.00 0.00 0.00 2.29
98 99 9.475620 TCAGTTACAGAGAAAGGAATCTACATA 57.524 33.333 0.00 0.00 0.00 2.29
103 104 8.774546 ACAGAGAAAGGAATCTACATATCTGA 57.225 34.615 0.00 0.00 0.00 3.27
104 105 9.206690 ACAGAGAAAGGAATCTACATATCTGAA 57.793 33.333 0.00 0.00 0.00 3.02
107 108 9.352784 GAGAAAGGAATCTACATATCTGAATCG 57.647 37.037 0.00 0.00 0.00 3.34
108 109 7.816995 AGAAAGGAATCTACATATCTGAATCGC 59.183 37.037 0.00 0.00 0.00 4.58
109 110 5.971763 AGGAATCTACATATCTGAATCGCC 58.028 41.667 0.00 0.00 0.00 5.54
110 111 5.481824 AGGAATCTACATATCTGAATCGCCA 59.518 40.000 0.00 0.00 0.00 5.69
111 112 6.014242 AGGAATCTACATATCTGAATCGCCAA 60.014 38.462 0.00 0.00 0.00 4.52
112 113 6.312426 GGAATCTACATATCTGAATCGCCAAG 59.688 42.308 0.00 0.00 0.00 3.61
113 114 4.560128 TCTACATATCTGAATCGCCAAGC 58.440 43.478 0.00 0.00 0.00 4.01
114 115 3.482156 ACATATCTGAATCGCCAAGCT 57.518 42.857 0.00 0.00 0.00 3.74
115 116 3.813443 ACATATCTGAATCGCCAAGCTT 58.187 40.909 0.00 0.00 0.00 3.74
116 117 3.562973 ACATATCTGAATCGCCAAGCTTG 59.437 43.478 19.93 19.93 0.00 4.01
117 118 0.737219 ATCTGAATCGCCAAGCTTGC 59.263 50.000 21.43 14.85 0.00 4.01
118 119 1.138247 CTGAATCGCCAAGCTTGCC 59.862 57.895 21.43 9.45 0.00 4.52
119 120 1.303561 TGAATCGCCAAGCTTGCCT 60.304 52.632 21.43 2.43 0.00 4.75
120 121 0.895100 TGAATCGCCAAGCTTGCCTT 60.895 50.000 21.43 10.35 0.00 4.35
121 122 0.244721 GAATCGCCAAGCTTGCCTTT 59.755 50.000 21.43 10.85 0.00 3.11
122 123 0.244721 AATCGCCAAGCTTGCCTTTC 59.755 50.000 21.43 5.97 0.00 2.62
123 124 0.895100 ATCGCCAAGCTTGCCTTTCA 60.895 50.000 21.43 1.33 0.00 2.69
124 125 1.372128 CGCCAAGCTTGCCTTTCAC 60.372 57.895 21.43 2.92 0.00 3.18
125 126 1.741525 GCCAAGCTTGCCTTTCACA 59.258 52.632 21.43 0.00 0.00 3.58
126 127 0.598419 GCCAAGCTTGCCTTTCACAC 60.598 55.000 21.43 0.00 0.00 3.82
127 128 0.746063 CCAAGCTTGCCTTTCACACA 59.254 50.000 21.43 0.00 0.00 3.72
128 129 1.136695 CCAAGCTTGCCTTTCACACAA 59.863 47.619 21.43 0.00 0.00 3.33
129 130 2.418471 CCAAGCTTGCCTTTCACACAAA 60.418 45.455 21.43 0.00 0.00 2.83
130 131 2.861935 CAAGCTTGCCTTTCACACAAAG 59.138 45.455 14.65 0.00 0.00 2.77
139 140 2.930826 TTCACACAAAGGAGAGTCCC 57.069 50.000 0.00 0.00 37.19 4.46
140 141 1.801242 TCACACAAAGGAGAGTCCCA 58.199 50.000 1.17 0.00 37.19 4.37
141 142 2.338809 TCACACAAAGGAGAGTCCCAT 58.661 47.619 1.17 0.00 37.19 4.00
142 143 2.303022 TCACACAAAGGAGAGTCCCATC 59.697 50.000 1.17 0.00 37.19 3.51
143 144 1.630878 ACACAAAGGAGAGTCCCATCC 59.369 52.381 1.17 0.00 37.19 3.51
144 145 0.905357 ACAAAGGAGAGTCCCATCCG 59.095 55.000 1.17 0.00 40.73 4.18
145 146 0.179000 CAAAGGAGAGTCCCATCCGG 59.821 60.000 0.00 0.00 40.73 5.14
146 147 0.042731 AAAGGAGAGTCCCATCCGGA 59.957 55.000 6.61 6.61 40.73 5.14
178 179 8.282455 ACGAAGTCTTCTATCTTGTATCTTCA 57.718 34.615 10.81 0.00 29.74 3.02
179 180 8.908903 ACGAAGTCTTCTATCTTGTATCTTCAT 58.091 33.333 10.81 0.00 29.74 2.57
185 186 9.868160 TCTTCTATCTTGTATCTTCATAGTCCA 57.132 33.333 0.00 0.00 0.00 4.02
188 189 9.421399 TCTATCTTGTATCTTCATAGTCCAACA 57.579 33.333 0.00 0.00 0.00 3.33
190 191 8.723942 ATCTTGTATCTTCATAGTCCAACAAC 57.276 34.615 0.00 0.00 0.00 3.32
191 192 7.103641 TCTTGTATCTTCATAGTCCAACAACC 58.896 38.462 0.00 0.00 0.00 3.77
192 193 5.741011 TGTATCTTCATAGTCCAACAACCC 58.259 41.667 0.00 0.00 0.00 4.11
193 194 3.328382 TCTTCATAGTCCAACAACCCG 57.672 47.619 0.00 0.00 0.00 5.28
194 195 2.027561 TCTTCATAGTCCAACAACCCGG 60.028 50.000 0.00 0.00 0.00 5.73
195 196 0.035820 TCATAGTCCAACAACCCGGC 60.036 55.000 0.00 0.00 0.00 6.13
196 197 1.029947 CATAGTCCAACAACCCGGCC 61.030 60.000 0.00 0.00 0.00 6.13
197 198 1.493854 ATAGTCCAACAACCCGGCCA 61.494 55.000 2.24 0.00 0.00 5.36
198 199 1.706995 TAGTCCAACAACCCGGCCAA 61.707 55.000 2.24 0.00 0.00 4.52
199 200 2.128507 GTCCAACAACCCGGCCAAA 61.129 57.895 2.24 0.00 0.00 3.28
200 201 1.830408 TCCAACAACCCGGCCAAAG 60.830 57.895 2.24 0.00 0.00 2.77
201 202 2.131067 CCAACAACCCGGCCAAAGT 61.131 57.895 2.24 0.00 0.00 2.66
202 203 0.824182 CCAACAACCCGGCCAAAGTA 60.824 55.000 2.24 0.00 0.00 2.24
203 204 1.253100 CAACAACCCGGCCAAAGTAT 58.747 50.000 2.24 0.00 0.00 2.12
204 205 2.438411 CAACAACCCGGCCAAAGTATA 58.562 47.619 2.24 0.00 0.00 1.47
205 206 3.020984 CAACAACCCGGCCAAAGTATAT 58.979 45.455 2.24 0.00 0.00 0.86
206 207 4.200874 CAACAACCCGGCCAAAGTATATA 58.799 43.478 2.24 0.00 0.00 0.86
207 208 4.081322 ACAACCCGGCCAAAGTATATAG 57.919 45.455 2.24 0.00 0.00 1.31
208 209 3.457012 ACAACCCGGCCAAAGTATATAGT 59.543 43.478 2.24 0.00 0.00 2.12
209 210 4.062991 CAACCCGGCCAAAGTATATAGTC 58.937 47.826 2.24 0.00 0.00 2.59
210 211 2.636403 ACCCGGCCAAAGTATATAGTCC 59.364 50.000 2.24 0.00 0.00 3.85
211 212 2.353406 CCCGGCCAAAGTATATAGTCCG 60.353 54.545 2.24 7.97 35.80 4.79
212 213 2.955614 CGGCCAAAGTATATAGTCCGG 58.044 52.381 2.24 0.00 32.75 5.14
213 214 2.696506 GGCCAAAGTATATAGTCCGGC 58.303 52.381 16.68 16.68 37.57 6.13
214 215 2.302157 GGCCAAAGTATATAGTCCGGCT 59.698 50.000 21.14 0.00 38.37 5.52
215 216 3.326747 GCCAAAGTATATAGTCCGGCTG 58.673 50.000 17.30 0.00 35.39 4.85
216 217 3.244112 GCCAAAGTATATAGTCCGGCTGT 60.244 47.826 17.30 0.00 35.39 4.40
217 218 4.557205 CCAAAGTATATAGTCCGGCTGTC 58.443 47.826 0.00 0.00 0.00 3.51
218 219 4.557205 CAAAGTATATAGTCCGGCTGTCC 58.443 47.826 0.00 0.00 0.00 4.02
229 230 3.003763 GCTGTCCGAGGACCCCTT 61.004 66.667 18.57 0.00 43.97 3.95
230 231 1.684734 GCTGTCCGAGGACCCCTTA 60.685 63.158 18.57 0.00 43.97 2.69
231 232 1.677637 GCTGTCCGAGGACCCCTTAG 61.678 65.000 18.57 10.32 43.97 2.18
232 233 0.324460 CTGTCCGAGGACCCCTTAGT 60.324 60.000 18.57 0.00 43.97 2.24
233 234 0.115745 TGTCCGAGGACCCCTTAGTT 59.884 55.000 18.57 0.00 43.97 2.24
234 235 0.822811 GTCCGAGGACCCCTTAGTTC 59.177 60.000 11.07 0.00 39.08 3.01
235 236 0.410663 TCCGAGGACCCCTTAGTTCA 59.589 55.000 0.00 0.00 31.76 3.18
236 237 0.824759 CCGAGGACCCCTTAGTTCAG 59.175 60.000 0.00 0.00 31.76 3.02
237 238 0.824759 CGAGGACCCCTTAGTTCAGG 59.175 60.000 0.00 0.00 31.76 3.86
238 239 1.618888 CGAGGACCCCTTAGTTCAGGA 60.619 57.143 0.00 0.00 35.71 3.86
239 240 1.832366 GAGGACCCCTTAGTTCAGGAC 59.168 57.143 0.00 0.00 35.71 3.85
240 241 1.437547 AGGACCCCTTAGTTCAGGACT 59.562 52.381 0.00 0.00 42.55 3.85
241 242 1.832366 GGACCCCTTAGTTCAGGACTC 59.168 57.143 0.00 0.00 39.86 3.36
242 243 1.832366 GACCCCTTAGTTCAGGACTCC 59.168 57.143 0.00 0.00 39.86 3.85
243 244 1.205055 CCCCTTAGTTCAGGACTCCC 58.795 60.000 0.00 0.00 39.86 4.30
244 245 1.273896 CCCCTTAGTTCAGGACTCCCT 60.274 57.143 0.00 0.00 45.74 4.20
245 246 2.112190 CCCTTAGTTCAGGACTCCCTC 58.888 57.143 0.00 0.00 42.02 4.30
246 247 2.559931 CCCTTAGTTCAGGACTCCCTCA 60.560 54.545 0.00 0.00 42.02 3.86
247 248 2.763448 CCTTAGTTCAGGACTCCCTCAG 59.237 54.545 0.00 0.00 42.02 3.35
248 249 2.534042 TAGTTCAGGACTCCCTCAGG 57.466 55.000 0.00 0.00 42.02 3.86
249 250 0.252467 AGTTCAGGACTCCCTCAGGG 60.252 60.000 1.80 1.80 42.02 4.45
259 260 4.171186 CCTCAGGGGGCCTTTAGT 57.829 61.111 0.84 0.00 0.00 2.24
260 261 1.915983 CCTCAGGGGGCCTTTAGTC 59.084 63.158 0.84 0.00 0.00 2.59
261 262 1.636769 CCTCAGGGGGCCTTTAGTCC 61.637 65.000 0.84 0.00 0.00 3.85
262 263 1.618447 TCAGGGGGCCTTTAGTCCC 60.618 63.158 0.84 2.94 41.87 4.46
263 264 2.691252 AGGGGGCCTTTAGTCCCG 60.691 66.667 0.84 0.00 43.55 5.14
264 265 2.689771 GGGGGCCTTTAGTCCCGA 60.690 66.667 0.84 0.00 43.55 5.14
265 266 2.076803 GGGGGCCTTTAGTCCCGAT 61.077 63.158 0.84 0.00 43.55 4.18
266 267 1.642513 GGGGGCCTTTAGTCCCGATT 61.643 60.000 0.84 0.00 43.55 3.34
267 268 0.257905 GGGGCCTTTAGTCCCGATTT 59.742 55.000 0.84 0.00 43.55 2.17
268 269 1.491754 GGGGCCTTTAGTCCCGATTTA 59.508 52.381 0.84 0.00 43.55 1.40
269 270 2.107726 GGGGCCTTTAGTCCCGATTTAT 59.892 50.000 0.84 0.00 43.55 1.40
270 271 3.436035 GGGGCCTTTAGTCCCGATTTATT 60.436 47.826 0.84 0.00 43.55 1.40
271 272 4.212716 GGGCCTTTAGTCCCGATTTATTT 58.787 43.478 0.84 0.00 32.00 1.40
272 273 4.037565 GGGCCTTTAGTCCCGATTTATTTG 59.962 45.833 0.84 0.00 32.00 2.32
273 274 4.643334 GGCCTTTAGTCCCGATTTATTTGT 59.357 41.667 0.00 0.00 0.00 2.83
274 275 5.220989 GGCCTTTAGTCCCGATTTATTTGTC 60.221 44.000 0.00 0.00 0.00 3.18
275 276 5.220989 GCCTTTAGTCCCGATTTATTTGTCC 60.221 44.000 0.00 0.00 0.00 4.02
276 277 5.298527 CCTTTAGTCCCGATTTATTTGTCCC 59.701 44.000 0.00 0.00 0.00 4.46
277 278 2.914059 AGTCCCGATTTATTTGTCCCG 58.086 47.619 0.00 0.00 0.00 5.14
278 279 1.944709 GTCCCGATTTATTTGTCCCGG 59.055 52.381 0.00 0.00 36.98 5.73
279 280 1.560611 TCCCGATTTATTTGTCCCGGT 59.439 47.619 0.00 0.00 35.61 5.28
280 281 2.026075 TCCCGATTTATTTGTCCCGGTT 60.026 45.455 0.00 0.00 35.61 4.44
281 282 2.098443 CCCGATTTATTTGTCCCGGTTG 59.902 50.000 0.00 0.00 35.61 3.77
282 283 2.098443 CCGATTTATTTGTCCCGGTTGG 59.902 50.000 0.00 0.00 33.02 3.77
283 284 2.750712 CGATTTATTTGTCCCGGTTGGT 59.249 45.455 0.00 0.00 34.77 3.67
284 285 3.426963 CGATTTATTTGTCCCGGTTGGTG 60.427 47.826 0.00 0.00 34.77 4.17
285 286 2.953284 TTATTTGTCCCGGTTGGTGA 57.047 45.000 0.00 0.00 34.77 4.02
286 287 2.953284 TATTTGTCCCGGTTGGTGAA 57.047 45.000 0.00 0.00 34.77 3.18
287 288 1.324383 ATTTGTCCCGGTTGGTGAAC 58.676 50.000 0.00 0.00 34.77 3.18
288 289 0.256464 TTTGTCCCGGTTGGTGAACT 59.744 50.000 0.00 0.00 34.77 3.01
289 290 0.464735 TTGTCCCGGTTGGTGAACTG 60.465 55.000 0.00 0.00 38.09 3.16
293 294 4.058797 CGGTTGGTGAACTGGGAC 57.941 61.111 0.00 0.00 35.12 4.46
294 295 1.450211 CGGTTGGTGAACTGGGACT 59.550 57.895 0.00 0.00 35.12 3.85
295 296 0.682852 CGGTTGGTGAACTGGGACTA 59.317 55.000 0.00 0.00 35.12 2.59
296 297 1.071071 CGGTTGGTGAACTGGGACTAA 59.929 52.381 0.00 0.00 35.12 2.24
297 298 2.485835 CGGTTGGTGAACTGGGACTAAA 60.486 50.000 0.00 0.00 35.12 1.85
298 299 3.146847 GGTTGGTGAACTGGGACTAAAG 58.853 50.000 0.00 0.00 32.15 1.85
299 300 3.146847 GTTGGTGAACTGGGACTAAAGG 58.853 50.000 0.00 0.00 0.00 3.11
300 301 2.414612 TGGTGAACTGGGACTAAAGGT 58.585 47.619 0.00 0.00 0.00 3.50
301 302 2.370849 TGGTGAACTGGGACTAAAGGTC 59.629 50.000 0.00 0.00 43.79 3.85
302 303 2.638363 GGTGAACTGGGACTAAAGGTCT 59.362 50.000 0.00 0.00 43.97 3.85
303 304 3.072622 GGTGAACTGGGACTAAAGGTCTT 59.927 47.826 0.00 0.00 43.97 3.01
304 305 4.316645 GTGAACTGGGACTAAAGGTCTTC 58.683 47.826 0.00 0.00 43.97 2.87
305 306 4.040584 GTGAACTGGGACTAAAGGTCTTCT 59.959 45.833 0.00 0.00 43.97 2.85
306 307 4.283722 TGAACTGGGACTAAAGGTCTTCTC 59.716 45.833 0.00 0.00 43.97 2.87
307 308 3.858135 ACTGGGACTAAAGGTCTTCTCA 58.142 45.455 0.00 0.00 43.97 3.27
308 309 4.232091 ACTGGGACTAAAGGTCTTCTCAA 58.768 43.478 0.00 0.00 43.97 3.02
309 310 4.040584 ACTGGGACTAAAGGTCTTCTCAAC 59.959 45.833 0.00 0.00 43.97 3.18
310 311 3.326880 TGGGACTAAAGGTCTTCTCAACC 59.673 47.826 0.00 0.00 43.97 3.77
311 312 3.586892 GGACTAAAGGTCTTCTCAACCG 58.413 50.000 0.00 0.00 43.97 4.44
312 313 3.586892 GACTAAAGGTCTTCTCAACCGG 58.413 50.000 0.00 0.00 41.89 5.28
313 314 2.302157 ACTAAAGGTCTTCTCAACCGGG 59.698 50.000 6.32 0.00 41.89 5.73
314 315 1.430992 AAAGGTCTTCTCAACCGGGA 58.569 50.000 6.32 0.00 41.89 5.14
315 316 1.657804 AAGGTCTTCTCAACCGGGAT 58.342 50.000 6.32 0.00 41.89 3.85
316 317 2.544844 AGGTCTTCTCAACCGGGATA 57.455 50.000 6.32 0.00 41.89 2.59
317 318 2.829023 AGGTCTTCTCAACCGGGATAA 58.171 47.619 6.32 0.00 41.89 1.75
318 319 3.178865 AGGTCTTCTCAACCGGGATAAA 58.821 45.455 6.32 0.00 41.89 1.40
319 320 3.197983 AGGTCTTCTCAACCGGGATAAAG 59.802 47.826 6.32 2.88 41.89 1.85
320 321 3.532542 GTCTTCTCAACCGGGATAAAGG 58.467 50.000 6.32 0.00 0.00 3.11
321 322 3.055312 GTCTTCTCAACCGGGATAAAGGT 60.055 47.826 6.32 0.00 43.68 3.50
322 323 3.197116 TCTTCTCAACCGGGATAAAGGTC 59.803 47.826 6.32 0.00 40.37 3.85
323 324 2.542550 TCTCAACCGGGATAAAGGTCA 58.457 47.619 6.32 0.00 40.37 4.02
324 325 3.112263 TCTCAACCGGGATAAAGGTCAT 58.888 45.455 6.32 0.00 40.37 3.06
325 326 3.521937 TCTCAACCGGGATAAAGGTCATT 59.478 43.478 6.32 0.00 40.37 2.57
326 327 3.877508 CTCAACCGGGATAAAGGTCATTC 59.122 47.826 6.32 0.00 40.37 2.67
327 328 2.949644 CAACCGGGATAAAGGTCATTCC 59.050 50.000 6.32 0.00 40.37 3.01
375 376 9.129209 GATAAGTTACAAGAGCATTGAAAAACC 57.871 33.333 8.50 0.00 0.00 3.27
376 377 6.463995 AGTTACAAGAGCATTGAAAAACCA 57.536 33.333 8.50 0.00 0.00 3.67
379 380 5.280654 ACAAGAGCATTGAAAAACCATGT 57.719 34.783 8.50 0.00 0.00 3.21
397 402 0.794605 GTGCTTTCGGCTTTGATCGC 60.795 55.000 0.00 0.00 42.39 4.58
464 470 1.885887 TGGATTTTTGGCTTCGGTCAG 59.114 47.619 0.00 0.00 0.00 3.51
509 515 1.670967 CCGAAAACAGGGAGGTCGTAC 60.671 57.143 0.00 0.00 0.00 3.67
528 537 4.061949 TTGAGCAGCAACATCGCA 57.938 50.000 0.00 0.00 0.00 5.10
630 640 6.509523 TTGGAAGAAGAACTAGGAAAAGGA 57.490 37.500 0.00 0.00 0.00 3.36
900 910 6.694844 CGATCGAGATATTGGACATAGAATGG 59.305 42.308 10.26 0.00 33.60 3.16
1080 1091 0.322906 TGGTTGGCCATACAATCGCA 60.323 50.000 6.09 0.00 40.46 5.10
1091 1102 6.380995 GCCATACAATCGCAATTCATAATGA 58.619 36.000 0.00 0.00 0.00 2.57
1197 1208 6.524586 CGAGTTATGAAAATGCAAGAAAGGAC 59.475 38.462 0.00 0.00 0.00 3.85
1208 1219 5.620206 TGCAAGAAAGGACACTAAATCTCA 58.380 37.500 0.00 0.00 0.00 3.27
1230 1241 9.869757 TCTCATCGTTAACTGAATTCTGAATAA 57.130 29.630 18.13 13.01 0.00 1.40
1375 4773 4.771356 CGTCGCCGCCGAAGAAGA 62.771 66.667 0.00 0.00 46.34 2.87
1394 4792 2.284847 TAGGGGGTTGGTCGGGTC 60.285 66.667 0.00 0.00 0.00 4.46
1409 4807 2.294078 GGTCCAGAGGAGGGTGTGG 61.294 68.421 0.00 0.00 29.39 4.17
1410 4808 2.607750 TCCAGAGGAGGGTGTGGC 60.608 66.667 0.00 0.00 30.70 5.01
1411 4809 2.608988 CCAGAGGAGGGTGTGGCT 60.609 66.667 0.00 0.00 0.00 4.75
1456 4860 3.338250 ACCATGATGGGTGCCGGT 61.338 61.111 17.04 0.00 43.37 5.28
1527 4938 7.597288 TTACGGAGAATGAATTCAGGAGATA 57.403 36.000 14.54 0.00 39.23 1.98
1600 5011 6.496911 ACTGAACAAGGGGCATTAATAACTTT 59.503 34.615 0.00 0.00 0.00 2.66
1601 5012 7.016170 ACTGAACAAGGGGCATTAATAACTTTT 59.984 33.333 0.00 0.00 0.00 2.27
1602 5013 7.740805 TGAACAAGGGGCATTAATAACTTTTT 58.259 30.769 0.00 0.00 0.00 1.94
1621 5032 2.414250 TTTTTGAGGAAGGGGGCATT 57.586 45.000 0.00 0.00 0.00 3.56
1622 5033 3.551635 TTTTTGAGGAAGGGGGCATTA 57.448 42.857 0.00 0.00 0.00 1.90
1623 5034 3.551635 TTTTGAGGAAGGGGGCATTAA 57.448 42.857 0.00 0.00 0.00 1.40
1624 5035 3.774842 TTTGAGGAAGGGGGCATTAAT 57.225 42.857 0.00 0.00 0.00 1.40
1625 5036 4.890499 TTTGAGGAAGGGGGCATTAATA 57.110 40.909 0.00 0.00 0.00 0.98
1626 5037 4.890499 TTGAGGAAGGGGGCATTAATAA 57.110 40.909 0.00 0.00 0.00 1.40
1627 5038 4.178956 TGAGGAAGGGGGCATTAATAAC 57.821 45.455 0.00 0.00 0.00 1.89
1628 5039 3.791545 TGAGGAAGGGGGCATTAATAACT 59.208 43.478 0.00 0.00 0.00 2.24
1629 5040 4.231890 TGAGGAAGGGGGCATTAATAACTT 59.768 41.667 0.00 0.00 0.00 2.66
1630 5041 4.546674 AGGAAGGGGGCATTAATAACTTG 58.453 43.478 0.00 0.00 0.00 3.16
1631 5042 4.016572 AGGAAGGGGGCATTAATAACTTGT 60.017 41.667 0.00 0.00 0.00 3.16
1636 5047 4.188462 GGGGCATTAATAACTTGTTTGGC 58.812 43.478 0.00 0.00 0.00 4.52
1670 5081 3.254166 CCAGGGAATATCCATCGCAAAAG 59.746 47.826 0.00 0.00 38.64 2.27
1673 5084 4.580580 AGGGAATATCCATCGCAAAAGAAC 59.419 41.667 0.00 0.00 38.64 3.01
1723 5233 8.922058 ATTGACAAGAGATGATTGTAAAATGC 57.078 30.769 0.00 0.00 40.86 3.56
1725 5235 7.532571 TGACAAGAGATGATTGTAAAATGCTG 58.467 34.615 0.00 0.00 40.86 4.41
1739 5249 5.662211 AAAATGCTGCTGACAAACATTTC 57.338 34.783 0.00 0.00 39.71 2.17
1747 5257 6.569226 GCTGCTGACAAACATTTCTGAGTAAT 60.569 38.462 0.00 0.00 0.00 1.89
1749 5259 6.262944 TGCTGACAAACATTTCTGAGTAATGT 59.737 34.615 11.05 11.05 45.49 2.71
1818 5328 4.154918 CACATTCAAGGAAGTAGCAACTCC 59.845 45.833 0.00 0.00 33.75 3.85
1822 5332 5.148651 TCAAGGAAGTAGCAACTCCTTAC 57.851 43.478 8.53 0.00 39.34 2.34
1841 5351 7.727181 TCCTTACTGGAATACTGAGATTTAGC 58.273 38.462 0.00 0.00 42.94 3.09
1892 5402 6.546034 ACAAAATTAAGTAGCAACACTGAGGT 59.454 34.615 0.00 0.00 0.00 3.85
2013 5538 2.614057 ACTTGCTGCAGTTAAGTGACAC 59.386 45.455 26.85 0.00 33.69 3.67
2100 5625 2.593346 AGAGCAGCTCAATTACCTCG 57.407 50.000 24.64 0.00 32.06 4.63
2139 5664 0.391130 GTGCAACTGCGACCATAGGA 60.391 55.000 0.00 0.00 45.83 2.94
2152 5677 1.209504 CCATAGGAAAGGAGTTGCCGA 59.790 52.381 0.00 0.00 43.43 5.54
2154 5679 2.467566 TAGGAAAGGAGTTGCCGAAC 57.532 50.000 0.00 0.00 43.43 3.95
2156 5681 1.073923 AGGAAAGGAGTTGCCGAACAT 59.926 47.619 0.00 0.00 43.43 2.71
2166 5691 1.532523 TGCCGAACATGAGAAATGCA 58.467 45.000 0.00 0.00 0.00 3.96
2210 5735 4.139786 CACATCATTAGGGCAGTAGCATT 58.860 43.478 0.00 0.00 44.61 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.117663 AGAGTTCAAGGGTTTAGCCACAA 60.118 43.478 0.26 0.00 39.65 3.33
1 2 2.441750 AGAGTTCAAGGGTTTAGCCACA 59.558 45.455 0.26 0.00 39.65 4.17
2 3 3.141767 AGAGTTCAAGGGTTTAGCCAC 57.858 47.619 0.26 0.00 39.65 5.01
3 4 4.986054 TTAGAGTTCAAGGGTTTAGCCA 57.014 40.909 0.26 0.00 39.65 4.75
4 5 4.458295 GGTTTAGAGTTCAAGGGTTTAGCC 59.542 45.833 0.00 0.00 0.00 3.93
5 6 4.458295 GGGTTTAGAGTTCAAGGGTTTAGC 59.542 45.833 0.00 0.00 0.00 3.09
6 7 5.877491 AGGGTTTAGAGTTCAAGGGTTTAG 58.123 41.667 0.00 0.00 0.00 1.85
7 8 5.917545 AGGGTTTAGAGTTCAAGGGTTTA 57.082 39.130 0.00 0.00 0.00 2.01
8 9 4.808767 AGGGTTTAGAGTTCAAGGGTTT 57.191 40.909 0.00 0.00 0.00 3.27
9 10 4.726583 GAAGGGTTTAGAGTTCAAGGGTT 58.273 43.478 0.00 0.00 0.00 4.11
10 11 3.244457 CGAAGGGTTTAGAGTTCAAGGGT 60.244 47.826 0.00 0.00 0.00 4.34
11 12 3.335579 CGAAGGGTTTAGAGTTCAAGGG 58.664 50.000 0.00 0.00 0.00 3.95
28 29 5.983720 CACCTGGTGTCTATATAAACCGAAG 59.016 44.000 18.76 0.00 35.33 3.79
29 30 5.163385 CCACCTGGTGTCTATATAAACCGAA 60.163 44.000 24.32 0.00 35.33 4.30
30 31 4.342951 CCACCTGGTGTCTATATAAACCGA 59.657 45.833 24.32 0.00 35.33 4.69
31 32 4.502604 CCCACCTGGTGTCTATATAAACCG 60.503 50.000 24.32 5.15 35.33 4.44
32 33 4.202430 CCCCACCTGGTGTCTATATAAACC 60.202 50.000 24.32 3.11 0.00 3.27
33 34 4.745783 GCCCCACCTGGTGTCTATATAAAC 60.746 50.000 24.32 0.00 0.00 2.01
34 35 3.393278 GCCCCACCTGGTGTCTATATAAA 59.607 47.826 24.32 0.00 0.00 1.40
35 36 2.976882 GCCCCACCTGGTGTCTATATAA 59.023 50.000 24.32 0.00 0.00 0.98
36 37 2.181419 AGCCCCACCTGGTGTCTATATA 59.819 50.000 24.32 0.00 0.00 0.86
37 38 1.061346 AGCCCCACCTGGTGTCTATAT 60.061 52.381 24.32 3.67 0.00 0.86
38 39 0.341961 AGCCCCACCTGGTGTCTATA 59.658 55.000 24.32 0.00 0.00 1.31
39 40 0.341961 TAGCCCCACCTGGTGTCTAT 59.658 55.000 24.32 10.85 0.00 1.98
40 41 0.325296 CTAGCCCCACCTGGTGTCTA 60.325 60.000 24.32 18.96 0.00 2.59
41 42 1.613630 CTAGCCCCACCTGGTGTCT 60.614 63.158 24.32 18.87 0.00 3.41
42 43 2.670148 CCTAGCCCCACCTGGTGTC 61.670 68.421 24.32 13.26 0.00 3.67
43 44 2.610859 CCTAGCCCCACCTGGTGT 60.611 66.667 24.32 9.32 0.00 4.16
44 45 3.411517 CCCTAGCCCCACCTGGTG 61.412 72.222 20.01 20.01 0.00 4.17
45 46 3.517038 AACCCTAGCCCCACCTGGT 62.517 63.158 0.00 0.00 0.00 4.00
46 47 2.614013 AACCCTAGCCCCACCTGG 60.614 66.667 0.00 0.00 0.00 4.45
47 48 0.912487 TACAACCCTAGCCCCACCTG 60.912 60.000 0.00 0.00 0.00 4.00
48 49 0.912968 GTACAACCCTAGCCCCACCT 60.913 60.000 0.00 0.00 0.00 4.00
49 50 1.202769 TGTACAACCCTAGCCCCACC 61.203 60.000 0.00 0.00 0.00 4.61
50 51 0.694196 TTGTACAACCCTAGCCCCAC 59.306 55.000 3.59 0.00 0.00 4.61
51 52 1.353022 CTTTGTACAACCCTAGCCCCA 59.647 52.381 8.07 0.00 0.00 4.96
52 53 1.353358 ACTTTGTACAACCCTAGCCCC 59.647 52.381 8.07 0.00 0.00 5.80
53 54 2.039348 TGACTTTGTACAACCCTAGCCC 59.961 50.000 8.07 0.16 0.00 5.19
54 55 3.244457 ACTGACTTTGTACAACCCTAGCC 60.244 47.826 8.07 0.00 0.00 3.93
55 56 4.004196 ACTGACTTTGTACAACCCTAGC 57.996 45.455 8.07 0.92 0.00 3.42
56 57 6.518493 TGTAACTGACTTTGTACAACCCTAG 58.482 40.000 8.07 5.62 0.00 3.02
57 58 6.324512 TCTGTAACTGACTTTGTACAACCCTA 59.675 38.462 8.07 0.00 0.00 3.53
58 59 5.129815 TCTGTAACTGACTTTGTACAACCCT 59.870 40.000 8.07 0.00 0.00 4.34
59 60 5.362263 TCTGTAACTGACTTTGTACAACCC 58.638 41.667 8.07 1.07 0.00 4.11
60 61 6.278363 TCTCTGTAACTGACTTTGTACAACC 58.722 40.000 8.07 1.44 0.00 3.77
61 62 7.766219 TTCTCTGTAACTGACTTTGTACAAC 57.234 36.000 8.07 0.00 0.00 3.32
62 63 7.494625 CCTTTCTCTGTAACTGACTTTGTACAA 59.505 37.037 3.59 3.59 0.00 2.41
63 64 6.984474 CCTTTCTCTGTAACTGACTTTGTACA 59.016 38.462 0.00 0.00 0.00 2.90
64 65 7.208080 TCCTTTCTCTGTAACTGACTTTGTAC 58.792 38.462 0.00 0.00 0.00 2.90
65 66 7.356089 TCCTTTCTCTGTAACTGACTTTGTA 57.644 36.000 0.00 0.00 0.00 2.41
66 67 6.235231 TCCTTTCTCTGTAACTGACTTTGT 57.765 37.500 0.00 0.00 0.00 2.83
67 68 7.659390 AGATTCCTTTCTCTGTAACTGACTTTG 59.341 37.037 0.00 0.00 0.00 2.77
68 69 7.740805 AGATTCCTTTCTCTGTAACTGACTTT 58.259 34.615 0.00 0.00 0.00 2.66
69 70 7.309770 AGATTCCTTTCTCTGTAACTGACTT 57.690 36.000 0.00 0.00 0.00 3.01
70 71 6.926630 AGATTCCTTTCTCTGTAACTGACT 57.073 37.500 0.00 0.00 0.00 3.41
71 72 7.603651 TGTAGATTCCTTTCTCTGTAACTGAC 58.396 38.462 0.00 0.00 0.00 3.51
72 73 7.776618 TGTAGATTCCTTTCTCTGTAACTGA 57.223 36.000 0.00 0.00 0.00 3.41
77 78 9.868160 TCAGATATGTAGATTCCTTTCTCTGTA 57.132 33.333 0.00 0.00 0.00 2.74
78 79 8.774546 TCAGATATGTAGATTCCTTTCTCTGT 57.225 34.615 0.00 0.00 0.00 3.41
81 82 9.352784 CGATTCAGATATGTAGATTCCTTTCTC 57.647 37.037 0.00 0.00 0.00 2.87
82 83 7.816995 GCGATTCAGATATGTAGATTCCTTTCT 59.183 37.037 0.00 0.00 0.00 2.52
83 84 7.064016 GGCGATTCAGATATGTAGATTCCTTTC 59.936 40.741 0.00 0.00 0.00 2.62
84 85 6.876257 GGCGATTCAGATATGTAGATTCCTTT 59.124 38.462 0.00 0.00 0.00 3.11
85 86 6.014242 TGGCGATTCAGATATGTAGATTCCTT 60.014 38.462 0.00 0.00 0.00 3.36
86 87 5.481824 TGGCGATTCAGATATGTAGATTCCT 59.518 40.000 0.00 0.00 0.00 3.36
87 88 5.724328 TGGCGATTCAGATATGTAGATTCC 58.276 41.667 0.00 0.00 0.00 3.01
88 89 6.183360 GCTTGGCGATTCAGATATGTAGATTC 60.183 42.308 0.00 0.00 0.00 2.52
89 90 5.641209 GCTTGGCGATTCAGATATGTAGATT 59.359 40.000 0.00 0.00 0.00 2.40
90 91 5.046735 AGCTTGGCGATTCAGATATGTAGAT 60.047 40.000 0.00 0.00 0.00 1.98
91 92 4.281941 AGCTTGGCGATTCAGATATGTAGA 59.718 41.667 0.00 0.00 0.00 2.59
92 93 4.564041 AGCTTGGCGATTCAGATATGTAG 58.436 43.478 0.00 0.00 0.00 2.74
93 94 4.607293 AGCTTGGCGATTCAGATATGTA 57.393 40.909 0.00 0.00 0.00 2.29
94 95 3.482156 AGCTTGGCGATTCAGATATGT 57.518 42.857 0.00 0.00 0.00 2.29
95 96 3.608707 GCAAGCTTGGCGATTCAGATATG 60.609 47.826 27.10 0.00 0.00 1.78
96 97 2.551459 GCAAGCTTGGCGATTCAGATAT 59.449 45.455 27.10 0.00 0.00 1.63
97 98 1.942657 GCAAGCTTGGCGATTCAGATA 59.057 47.619 27.10 0.00 0.00 1.98
98 99 0.737219 GCAAGCTTGGCGATTCAGAT 59.263 50.000 27.10 0.00 0.00 2.90
99 100 1.308069 GGCAAGCTTGGCGATTCAGA 61.308 55.000 33.68 0.00 43.97 3.27
100 101 1.138247 GGCAAGCTTGGCGATTCAG 59.862 57.895 33.68 3.72 43.97 3.02
101 102 3.277133 GGCAAGCTTGGCGATTCA 58.723 55.556 33.68 0.00 43.97 2.57
108 109 0.746063 TGTGTGAAAGGCAAGCTTGG 59.254 50.000 27.10 9.80 0.00 3.61
109 110 2.582728 TTGTGTGAAAGGCAAGCTTG 57.417 45.000 22.44 22.44 0.00 4.01
110 111 2.159057 CCTTTGTGTGAAAGGCAAGCTT 60.159 45.455 0.00 0.00 40.17 3.74
111 112 1.410153 CCTTTGTGTGAAAGGCAAGCT 59.590 47.619 0.00 0.00 40.17 3.74
112 113 1.408702 TCCTTTGTGTGAAAGGCAAGC 59.591 47.619 8.12 0.00 44.92 4.01
113 114 2.951642 TCTCCTTTGTGTGAAAGGCAAG 59.048 45.455 8.12 2.80 44.92 4.01
114 115 2.951642 CTCTCCTTTGTGTGAAAGGCAA 59.048 45.455 8.12 0.00 44.92 4.52
115 116 2.092429 ACTCTCCTTTGTGTGAAAGGCA 60.092 45.455 8.12 0.00 44.92 4.75
116 117 2.550180 GACTCTCCTTTGTGTGAAAGGC 59.450 50.000 8.12 0.00 44.92 4.35
117 118 3.142174 GGACTCTCCTTTGTGTGAAAGG 58.858 50.000 6.83 6.83 46.28 3.11
118 119 3.142174 GGGACTCTCCTTTGTGTGAAAG 58.858 50.000 0.00 0.00 36.57 2.62
119 120 2.507886 TGGGACTCTCCTTTGTGTGAAA 59.492 45.455 0.00 0.00 36.57 2.69
120 121 2.123589 TGGGACTCTCCTTTGTGTGAA 58.876 47.619 0.00 0.00 36.57 3.18
121 122 1.801242 TGGGACTCTCCTTTGTGTGA 58.199 50.000 0.00 0.00 36.57 3.58
122 123 2.616510 GGATGGGACTCTCCTTTGTGTG 60.617 54.545 0.00 0.00 36.57 3.82
123 124 1.630878 GGATGGGACTCTCCTTTGTGT 59.369 52.381 0.00 0.00 36.57 3.72
124 125 1.406069 CGGATGGGACTCTCCTTTGTG 60.406 57.143 0.00 0.00 36.57 3.33
125 126 0.905357 CGGATGGGACTCTCCTTTGT 59.095 55.000 0.00 0.00 36.57 2.83
126 127 0.179000 CCGGATGGGACTCTCCTTTG 59.821 60.000 0.00 0.00 38.47 2.77
127 128 0.042731 TCCGGATGGGACTCTCCTTT 59.957 55.000 0.00 0.00 40.94 3.11
128 129 1.704082 TCCGGATGGGACTCTCCTT 59.296 57.895 0.00 0.00 40.94 3.36
129 130 3.440023 TCCGGATGGGACTCTCCT 58.560 61.111 0.00 0.00 40.94 3.69
143 144 2.126580 GACTTCGTCCCGTGTCCG 60.127 66.667 0.00 0.00 0.00 4.79
144 145 0.388263 GAAGACTTCGTCCCGTGTCC 60.388 60.000 0.00 0.00 34.39 4.02
145 146 0.597072 AGAAGACTTCGTCCCGTGTC 59.403 55.000 9.53 0.00 32.18 3.67
146 147 1.901591 TAGAAGACTTCGTCCCGTGT 58.098 50.000 9.53 0.00 32.18 4.49
147 148 2.683867 AGATAGAAGACTTCGTCCCGTG 59.316 50.000 9.53 0.00 32.18 4.94
148 149 3.002038 AGATAGAAGACTTCGTCCCGT 57.998 47.619 9.53 0.00 32.18 5.28
149 150 3.128938 ACAAGATAGAAGACTTCGTCCCG 59.871 47.826 9.53 8.35 32.18 5.14
150 151 4.722361 ACAAGATAGAAGACTTCGTCCC 57.278 45.455 9.53 1.49 32.18 4.46
151 152 7.266922 AGATACAAGATAGAAGACTTCGTCC 57.733 40.000 9.53 3.13 32.18 4.79
152 153 8.399425 TGAAGATACAAGATAGAAGACTTCGTC 58.601 37.037 9.53 11.49 35.49 4.20
153 154 8.282455 TGAAGATACAAGATAGAAGACTTCGT 57.718 34.615 9.53 2.90 35.49 3.85
159 160 9.868160 TGGACTATGAAGATACAAGATAGAAGA 57.132 33.333 0.00 0.00 0.00 2.87
162 163 9.421399 TGTTGGACTATGAAGATACAAGATAGA 57.579 33.333 0.00 0.00 0.00 1.98
164 165 9.817809 GTTGTTGGACTATGAAGATACAAGATA 57.182 33.333 0.00 0.00 0.00 1.98
165 166 7.770897 GGTTGTTGGACTATGAAGATACAAGAT 59.229 37.037 0.00 0.00 0.00 2.40
166 167 7.103641 GGTTGTTGGACTATGAAGATACAAGA 58.896 38.462 0.00 0.00 0.00 3.02
167 168 6.316390 GGGTTGTTGGACTATGAAGATACAAG 59.684 42.308 0.00 0.00 0.00 3.16
168 169 6.177610 GGGTTGTTGGACTATGAAGATACAA 58.822 40.000 0.00 0.00 0.00 2.41
169 170 5.625886 CGGGTTGTTGGACTATGAAGATACA 60.626 44.000 0.00 0.00 0.00 2.29
170 171 4.809426 CGGGTTGTTGGACTATGAAGATAC 59.191 45.833 0.00 0.00 0.00 2.24
171 172 4.141801 CCGGGTTGTTGGACTATGAAGATA 60.142 45.833 0.00 0.00 0.00 1.98
172 173 3.370527 CCGGGTTGTTGGACTATGAAGAT 60.371 47.826 0.00 0.00 0.00 2.40
173 174 2.027561 CCGGGTTGTTGGACTATGAAGA 60.028 50.000 0.00 0.00 0.00 2.87
174 175 2.356135 CCGGGTTGTTGGACTATGAAG 58.644 52.381 0.00 0.00 0.00 3.02
175 176 1.612199 GCCGGGTTGTTGGACTATGAA 60.612 52.381 2.18 0.00 0.00 2.57
176 177 0.035820 GCCGGGTTGTTGGACTATGA 60.036 55.000 2.18 0.00 0.00 2.15
177 178 1.029947 GGCCGGGTTGTTGGACTATG 61.030 60.000 2.18 0.00 0.00 2.23
178 179 1.301954 GGCCGGGTTGTTGGACTAT 59.698 57.895 2.18 0.00 0.00 2.12
179 180 1.706995 TTGGCCGGGTTGTTGGACTA 61.707 55.000 2.18 0.00 33.02 2.59
180 181 2.575455 TTTGGCCGGGTTGTTGGACT 62.575 55.000 2.18 0.00 33.02 3.85
181 182 2.082629 CTTTGGCCGGGTTGTTGGAC 62.083 60.000 2.18 0.00 0.00 4.02
182 183 1.830408 CTTTGGCCGGGTTGTTGGA 60.830 57.895 2.18 0.00 0.00 3.53
183 184 0.824182 TACTTTGGCCGGGTTGTTGG 60.824 55.000 2.18 0.00 0.00 3.77
184 185 1.253100 ATACTTTGGCCGGGTTGTTG 58.747 50.000 2.18 0.00 0.00 3.33
185 186 2.883122 TATACTTTGGCCGGGTTGTT 57.117 45.000 2.18 0.00 0.00 2.83
186 187 3.457012 ACTATATACTTTGGCCGGGTTGT 59.543 43.478 2.18 0.00 0.00 3.32
187 188 4.062991 GACTATATACTTTGGCCGGGTTG 58.937 47.826 2.18 0.00 0.00 3.77
188 189 3.072038 GGACTATATACTTTGGCCGGGTT 59.928 47.826 2.18 0.00 0.00 4.11
189 190 2.636403 GGACTATATACTTTGGCCGGGT 59.364 50.000 2.18 0.00 0.00 5.28
190 191 2.353406 CGGACTATATACTTTGGCCGGG 60.353 54.545 2.18 0.00 34.29 5.73
191 192 2.955614 CGGACTATATACTTTGGCCGG 58.044 52.381 6.17 0.00 34.29 6.13
192 193 2.929592 GCCGGACTATATACTTTGGCCG 60.930 54.545 5.05 6.96 35.24 6.13
193 194 2.302157 AGCCGGACTATATACTTTGGCC 59.698 50.000 5.05 0.00 42.14 5.36
194 195 3.244112 ACAGCCGGACTATATACTTTGGC 60.244 47.826 5.05 0.00 41.50 4.52
195 196 4.557205 GACAGCCGGACTATATACTTTGG 58.443 47.826 5.05 0.00 0.00 3.28
196 197 4.557205 GGACAGCCGGACTATATACTTTG 58.443 47.826 5.05 0.00 0.00 2.77
197 198 4.868314 GGACAGCCGGACTATATACTTT 57.132 45.455 5.05 0.00 0.00 2.66
212 213 1.677637 CTAAGGGGTCCTCGGACAGC 61.678 65.000 17.21 1.56 46.20 4.40
213 214 0.324460 ACTAAGGGGTCCTCGGACAG 60.324 60.000 17.21 8.32 46.20 3.51
214 215 0.115745 AACTAAGGGGTCCTCGGACA 59.884 55.000 17.21 0.00 46.20 4.02
215 216 0.822811 GAACTAAGGGGTCCTCGGAC 59.177 60.000 7.57 7.57 43.87 4.79
216 217 0.410663 TGAACTAAGGGGTCCTCGGA 59.589 55.000 0.00 0.00 30.89 4.55
217 218 0.824759 CTGAACTAAGGGGTCCTCGG 59.175 60.000 0.00 0.00 30.89 4.63
218 219 0.824759 CCTGAACTAAGGGGTCCTCG 59.175 60.000 0.00 0.00 33.28 4.63
219 220 1.832366 GTCCTGAACTAAGGGGTCCTC 59.168 57.143 0.00 0.00 37.96 3.71
220 221 1.437547 AGTCCTGAACTAAGGGGTCCT 59.562 52.381 0.00 0.00 36.07 3.85
221 222 1.832366 GAGTCCTGAACTAAGGGGTCC 59.168 57.143 0.00 0.00 38.74 4.46
222 223 1.832366 GGAGTCCTGAACTAAGGGGTC 59.168 57.143 0.41 0.00 38.74 4.46
223 224 1.555058 GGGAGTCCTGAACTAAGGGGT 60.555 57.143 9.58 0.00 38.74 4.95
224 225 1.205055 GGGAGTCCTGAACTAAGGGG 58.795 60.000 9.58 0.00 38.74 4.79
225 226 2.112190 GAGGGAGTCCTGAACTAAGGG 58.888 57.143 9.58 0.00 45.05 3.95
226 227 2.763448 CTGAGGGAGTCCTGAACTAAGG 59.237 54.545 9.58 0.00 45.05 2.69
227 228 2.763448 CCTGAGGGAGTCCTGAACTAAG 59.237 54.545 9.58 0.00 45.05 2.18
228 229 2.821437 CCTGAGGGAGTCCTGAACTAA 58.179 52.381 9.58 0.00 45.05 2.24
229 230 2.534042 CCTGAGGGAGTCCTGAACTA 57.466 55.000 9.58 0.00 45.05 2.24
230 231 3.390280 CCTGAGGGAGTCCTGAACT 57.610 57.895 9.58 0.00 45.05 3.01
242 243 1.636769 GGACTAAAGGCCCCCTGAGG 61.637 65.000 0.00 0.00 32.13 3.86
243 244 1.636769 GGGACTAAAGGCCCCCTGAG 61.637 65.000 10.11 0.00 38.45 3.35
244 245 1.618447 GGGACTAAAGGCCCCCTGA 60.618 63.158 10.11 0.00 38.45 3.86
245 246 3.007542 GGGACTAAAGGCCCCCTG 58.992 66.667 10.11 0.00 38.45 4.45
246 247 2.562973 ATCGGGACTAAAGGCCCCCT 62.563 60.000 15.63 0.00 41.50 4.79
247 248 1.642513 AATCGGGACTAAAGGCCCCC 61.643 60.000 15.63 0.00 41.50 5.40
248 249 0.257905 AAATCGGGACTAAAGGCCCC 59.742 55.000 15.63 7.40 41.50 5.80
249 250 3.503800 ATAAATCGGGACTAAAGGCCC 57.496 47.619 11.29 11.29 41.11 5.80
250 251 4.643334 ACAAATAAATCGGGACTAAAGGCC 59.357 41.667 0.00 0.00 0.00 5.19
251 252 5.220989 GGACAAATAAATCGGGACTAAAGGC 60.221 44.000 0.00 0.00 0.00 4.35
252 253 5.298527 GGGACAAATAAATCGGGACTAAAGG 59.701 44.000 0.00 0.00 0.00 3.11
253 254 5.007332 CGGGACAAATAAATCGGGACTAAAG 59.993 44.000 0.00 0.00 0.00 1.85
254 255 4.877251 CGGGACAAATAAATCGGGACTAAA 59.123 41.667 0.00 0.00 0.00 1.85
255 256 4.444536 CGGGACAAATAAATCGGGACTAA 58.555 43.478 0.00 0.00 0.00 2.24
256 257 3.181463 CCGGGACAAATAAATCGGGACTA 60.181 47.826 0.00 0.00 34.54 2.59
257 258 2.420967 CCGGGACAAATAAATCGGGACT 60.421 50.000 0.00 0.00 34.54 3.85
258 259 1.944709 CCGGGACAAATAAATCGGGAC 59.055 52.381 0.00 0.00 34.54 4.46
259 260 1.560611 ACCGGGACAAATAAATCGGGA 59.439 47.619 6.32 0.00 41.49 5.14
260 261 2.047002 ACCGGGACAAATAAATCGGG 57.953 50.000 6.32 0.00 41.49 5.14
261 262 2.098443 CCAACCGGGACAAATAAATCGG 59.902 50.000 6.32 0.00 42.69 4.18
262 263 2.750712 ACCAACCGGGACAAATAAATCG 59.249 45.455 6.32 0.00 41.15 3.34
263 264 3.759618 TCACCAACCGGGACAAATAAATC 59.240 43.478 6.32 0.00 41.15 2.17
264 265 3.768878 TCACCAACCGGGACAAATAAAT 58.231 40.909 6.32 0.00 41.15 1.40
265 266 3.225177 TCACCAACCGGGACAAATAAA 57.775 42.857 6.32 0.00 41.15 1.40
266 267 2.885894 GTTCACCAACCGGGACAAATAA 59.114 45.455 6.32 0.00 41.15 1.40
267 268 2.106857 AGTTCACCAACCGGGACAAATA 59.893 45.455 6.32 0.00 41.15 1.40
268 269 1.133606 AGTTCACCAACCGGGACAAAT 60.134 47.619 6.32 0.00 41.15 2.32
269 270 0.256464 AGTTCACCAACCGGGACAAA 59.744 50.000 6.32 0.00 41.15 2.83
270 271 0.464735 CAGTTCACCAACCGGGACAA 60.465 55.000 6.32 0.00 41.15 3.18
271 272 1.147376 CAGTTCACCAACCGGGACA 59.853 57.895 6.32 0.00 41.15 4.02
272 273 1.599797 CCAGTTCACCAACCGGGAC 60.600 63.158 6.32 0.00 41.15 4.46
273 274 2.833227 CCAGTTCACCAACCGGGA 59.167 61.111 6.32 0.00 41.15 5.14
274 275 2.282180 CCCAGTTCACCAACCGGG 60.282 66.667 6.32 0.00 42.77 5.73
275 276 1.599797 GTCCCAGTTCACCAACCGG 60.600 63.158 0.00 0.00 38.77 5.28
276 277 0.682852 TAGTCCCAGTTCACCAACCG 59.317 55.000 0.00 0.00 32.22 4.44
277 278 2.943036 TTAGTCCCAGTTCACCAACC 57.057 50.000 0.00 0.00 32.22 3.77
278 279 3.146847 CCTTTAGTCCCAGTTCACCAAC 58.853 50.000 0.00 0.00 0.00 3.77
279 280 2.781174 ACCTTTAGTCCCAGTTCACCAA 59.219 45.455 0.00 0.00 0.00 3.67
280 281 2.370849 GACCTTTAGTCCCAGTTCACCA 59.629 50.000 0.00 0.00 39.84 4.17
281 282 3.055209 GACCTTTAGTCCCAGTTCACC 57.945 52.381 0.00 0.00 39.84 4.02
291 292 3.586892 CCGGTTGAGAAGACCTTTAGTC 58.413 50.000 0.00 0.00 46.71 2.59
292 293 2.302157 CCCGGTTGAGAAGACCTTTAGT 59.698 50.000 0.00 0.00 34.95 2.24
293 294 2.565834 TCCCGGTTGAGAAGACCTTTAG 59.434 50.000 0.00 0.00 34.95 1.85
294 295 2.612000 TCCCGGTTGAGAAGACCTTTA 58.388 47.619 0.00 0.00 34.95 1.85
295 296 1.430992 TCCCGGTTGAGAAGACCTTT 58.569 50.000 0.00 0.00 34.95 3.11
296 297 1.657804 ATCCCGGTTGAGAAGACCTT 58.342 50.000 0.00 0.00 34.95 3.50
297 298 2.544844 TATCCCGGTTGAGAAGACCT 57.455 50.000 0.00 0.00 34.95 3.85
298 299 3.532542 CTTTATCCCGGTTGAGAAGACC 58.467 50.000 0.00 0.00 0.00 3.85
299 300 3.055312 ACCTTTATCCCGGTTGAGAAGAC 60.055 47.826 0.00 0.00 0.00 3.01
300 301 3.178865 ACCTTTATCCCGGTTGAGAAGA 58.821 45.455 0.00 0.00 0.00 2.87
301 302 3.055385 TGACCTTTATCCCGGTTGAGAAG 60.055 47.826 0.00 0.63 32.62 2.85
302 303 2.907696 TGACCTTTATCCCGGTTGAGAA 59.092 45.455 0.00 0.00 32.62 2.87
303 304 2.542550 TGACCTTTATCCCGGTTGAGA 58.457 47.619 0.00 0.00 32.62 3.27
304 305 3.560636 ATGACCTTTATCCCGGTTGAG 57.439 47.619 0.00 0.00 32.62 3.02
305 306 3.371166 GGAATGACCTTTATCCCGGTTGA 60.371 47.826 0.00 0.00 32.62 3.18
306 307 2.949644 GGAATGACCTTTATCCCGGTTG 59.050 50.000 0.00 0.00 32.62 3.77
307 308 3.292492 GGAATGACCTTTATCCCGGTT 57.708 47.619 0.00 0.00 32.62 4.44
319 320 4.262249 GCCATCACTAGTAGAGGAATGACC 60.262 50.000 3.59 0.00 39.35 4.02
320 321 4.586841 AGCCATCACTAGTAGAGGAATGAC 59.413 45.833 3.59 0.00 0.00 3.06
321 322 4.809193 AGCCATCACTAGTAGAGGAATGA 58.191 43.478 3.59 0.00 0.00 2.57
322 323 4.586421 TGAGCCATCACTAGTAGAGGAATG 59.414 45.833 3.59 2.21 0.00 2.67
323 324 4.809193 TGAGCCATCACTAGTAGAGGAAT 58.191 43.478 3.59 0.00 0.00 3.01
324 325 4.251103 TGAGCCATCACTAGTAGAGGAA 57.749 45.455 3.59 0.00 0.00 3.36
325 326 3.953542 TGAGCCATCACTAGTAGAGGA 57.046 47.619 3.59 1.49 0.00 3.71
326 327 3.894427 ACATGAGCCATCACTAGTAGAGG 59.106 47.826 3.59 0.00 38.57 3.69
327 328 4.582240 TCACATGAGCCATCACTAGTAGAG 59.418 45.833 3.59 0.00 38.57 2.43
328 329 4.536765 TCACATGAGCCATCACTAGTAGA 58.463 43.478 3.59 0.00 38.57 2.59
329 330 4.926140 TCACATGAGCCATCACTAGTAG 57.074 45.455 0.00 0.00 38.57 2.57
330 331 6.551227 ACTTATCACATGAGCCATCACTAGTA 59.449 38.462 0.00 0.00 38.57 1.82
331 332 5.365025 ACTTATCACATGAGCCATCACTAGT 59.635 40.000 0.00 0.00 38.57 2.57
332 333 5.851720 ACTTATCACATGAGCCATCACTAG 58.148 41.667 0.00 0.00 38.57 2.57
333 334 5.876651 ACTTATCACATGAGCCATCACTA 57.123 39.130 0.00 0.00 38.57 2.74
334 335 4.767578 ACTTATCACATGAGCCATCACT 57.232 40.909 0.00 0.00 38.57 3.41
335 336 5.817296 TGTAACTTATCACATGAGCCATCAC 59.183 40.000 0.00 0.00 38.57 3.06
336 337 5.988287 TGTAACTTATCACATGAGCCATCA 58.012 37.500 0.00 0.00 40.50 3.07
337 338 6.763135 TCTTGTAACTTATCACATGAGCCATC 59.237 38.462 0.00 0.00 0.00 3.51
397 402 3.285484 AGATCAAATGGTGCTAGCTTGG 58.715 45.455 17.23 0.00 0.00 3.61
464 470 1.000843 GGGTTTGCACATGGAAGGAAC 59.999 52.381 0.00 0.00 0.00 3.62
528 537 2.286425 CCCCCATCACCTCCACCT 60.286 66.667 0.00 0.00 0.00 4.00
1006 1017 7.172703 CCACGTTACTATTGTTTCTTTCTCCTT 59.827 37.037 0.00 0.00 0.00 3.36
1197 1208 9.907576 GAATTCAGTTAACGATGAGATTTAGTG 57.092 33.333 0.00 0.00 0.00 2.74
1330 4727 0.537828 ACATTAAACCCGCACCCGTT 60.538 50.000 0.00 0.00 0.00 4.44
1332 4729 1.504446 CACATTAAACCCGCACCCG 59.496 57.895 0.00 0.00 0.00 5.28
1375 4773 2.285144 CCCGACCAACCCCCTACT 60.285 66.667 0.00 0.00 0.00 2.57
1394 4792 2.608988 AGCCACACCCTCCTCTGG 60.609 66.667 0.00 0.00 0.00 3.86
1423 4827 0.178938 TGGTGCCACCCATGAACAAT 60.179 50.000 12.25 0.00 37.50 2.71
1424 4828 0.178938 ATGGTGCCACCCATGAACAA 60.179 50.000 12.25 0.00 43.65 2.83
1462 4873 1.831624 CGACTATTTCGCGAGCGTC 59.168 57.895 17.24 13.09 41.87 5.19
1480 4891 0.250038 TGCCGGATATCAGCTCAAGC 60.250 55.000 5.05 6.38 42.49 4.01
1527 4938 2.038952 TGCCTGAACTACAAGCTGTGAT 59.961 45.455 0.00 0.00 36.93 3.06
1602 5013 2.414250 AATGCCCCCTTCCTCAAAAA 57.586 45.000 0.00 0.00 0.00 1.94
1603 5014 3.551635 TTAATGCCCCCTTCCTCAAAA 57.448 42.857 0.00 0.00 0.00 2.44
1604 5015 3.774842 ATTAATGCCCCCTTCCTCAAA 57.225 42.857 0.00 0.00 0.00 2.69
1605 5016 4.231890 AGTTATTAATGCCCCCTTCCTCAA 59.768 41.667 0.00 0.00 0.00 3.02
1606 5017 3.791545 AGTTATTAATGCCCCCTTCCTCA 59.208 43.478 0.00 0.00 0.00 3.86
1607 5018 4.455070 AGTTATTAATGCCCCCTTCCTC 57.545 45.455 0.00 0.00 0.00 3.71
1608 5019 4.016572 ACAAGTTATTAATGCCCCCTTCCT 60.017 41.667 0.00 0.00 0.00 3.36
1609 5020 4.286707 ACAAGTTATTAATGCCCCCTTCC 58.713 43.478 0.00 0.00 0.00 3.46
1610 5021 5.932619 AACAAGTTATTAATGCCCCCTTC 57.067 39.130 0.00 0.00 0.00 3.46
1611 5022 5.045942 CCAAACAAGTTATTAATGCCCCCTT 60.046 40.000 0.00 0.00 0.00 3.95
1612 5023 4.469586 CCAAACAAGTTATTAATGCCCCCT 59.530 41.667 0.00 0.00 0.00 4.79
1613 5024 4.765273 CCAAACAAGTTATTAATGCCCCC 58.235 43.478 0.00 0.00 0.00 5.40
1614 5025 4.188462 GCCAAACAAGTTATTAATGCCCC 58.812 43.478 0.00 0.00 0.00 5.80
1615 5026 4.081142 AGGCCAAACAAGTTATTAATGCCC 60.081 41.667 5.01 0.00 35.80 5.36
1616 5027 4.869861 CAGGCCAAACAAGTTATTAATGCC 59.130 41.667 5.01 0.00 35.42 4.40
1617 5028 5.719173 TCAGGCCAAACAAGTTATTAATGC 58.281 37.500 5.01 0.00 0.00 3.56
1618 5029 7.276218 CACATCAGGCCAAACAAGTTATTAATG 59.724 37.037 5.01 0.00 0.00 1.90
1619 5030 7.322664 CACATCAGGCCAAACAAGTTATTAAT 58.677 34.615 5.01 0.00 0.00 1.40
1620 5031 6.686630 CACATCAGGCCAAACAAGTTATTAA 58.313 36.000 5.01 0.00 0.00 1.40
1621 5032 5.336372 GCACATCAGGCCAAACAAGTTATTA 60.336 40.000 5.01 0.00 0.00 0.98
1622 5033 4.561326 GCACATCAGGCCAAACAAGTTATT 60.561 41.667 5.01 0.00 0.00 1.40
1623 5034 3.056607 GCACATCAGGCCAAACAAGTTAT 60.057 43.478 5.01 0.00 0.00 1.89
1624 5035 2.295909 GCACATCAGGCCAAACAAGTTA 59.704 45.455 5.01 0.00 0.00 2.24
1625 5036 1.069049 GCACATCAGGCCAAACAAGTT 59.931 47.619 5.01 0.00 0.00 2.66
1626 5037 0.675633 GCACATCAGGCCAAACAAGT 59.324 50.000 5.01 0.00 0.00 3.16
1627 5038 0.675083 TGCACATCAGGCCAAACAAG 59.325 50.000 5.01 0.00 0.00 3.16
1628 5039 0.388659 GTGCACATCAGGCCAAACAA 59.611 50.000 13.17 0.00 0.00 2.83
1629 5040 1.462731 GGTGCACATCAGGCCAAACA 61.463 55.000 20.43 0.00 0.00 2.83
1630 5041 1.290009 GGTGCACATCAGGCCAAAC 59.710 57.895 20.43 0.00 0.00 2.93
1631 5042 1.907807 GGGTGCACATCAGGCCAAA 60.908 57.895 20.43 0.00 0.00 3.28
1636 5047 2.044650 CCCTGGGTGCACATCAGG 60.045 66.667 33.70 33.70 45.57 3.86
1670 5081 8.853345 CAAGTCATTGCATATTTTAGTGTGTTC 58.147 33.333 0.00 0.00 0.00 3.18
1673 5084 7.537715 TCCAAGTCATTGCATATTTTAGTGTG 58.462 34.615 0.00 0.00 34.91 3.82
1711 5122 5.691305 TGTTTGTCAGCAGCATTTTACAATC 59.309 36.000 0.00 0.00 0.00 2.67
1715 5126 6.421801 AGAAATGTTTGTCAGCAGCATTTTAC 59.578 34.615 0.00 0.00 39.58 2.01
1716 5127 6.421501 CAGAAATGTTTGTCAGCAGCATTTTA 59.578 34.615 0.00 0.00 39.58 1.52
1717 5128 5.235616 CAGAAATGTTTGTCAGCAGCATTTT 59.764 36.000 0.00 0.00 39.58 1.82
1718 5129 4.748102 CAGAAATGTTTGTCAGCAGCATTT 59.252 37.500 0.00 0.00 40.80 2.32
1723 5233 4.825546 ACTCAGAAATGTTTGTCAGCAG 57.174 40.909 0.00 0.00 0.00 4.24
1725 5235 6.672147 ACATTACTCAGAAATGTTTGTCAGC 58.328 36.000 0.00 0.00 43.31 4.26
1761 5271 9.941325 TGACCATGCAAATTACAATTAAATTCT 57.059 25.926 0.00 0.00 0.00 2.40
1793 5303 5.133221 AGTTGCTACTTCCTTGAATGTGTT 58.867 37.500 0.00 0.00 0.00 3.32
1803 5313 3.515901 CCAGTAAGGAGTTGCTACTTCCT 59.484 47.826 1.43 7.73 41.22 3.36
1818 5328 9.553064 AATGCTAAATCTCAGTATTCCAGTAAG 57.447 33.333 0.00 0.00 0.00 2.34
1822 5332 7.637229 CACAATGCTAAATCTCAGTATTCCAG 58.363 38.462 0.00 0.00 0.00 3.86
1869 5379 8.685838 TTACCTCAGTGTTGCTACTTAATTTT 57.314 30.769 0.00 0.00 0.00 1.82
1892 5402 7.561021 TGTTTGTGAGCTGAAACAAGTATTA 57.439 32.000 11.16 0.00 38.73 0.98
1950 5474 6.348786 CCAATTGGATGCACTATTTATCTCCG 60.349 42.308 20.50 0.00 37.39 4.63
2025 5550 6.652062 TGCAACTGCCTGTGATATAATGATAG 59.348 38.462 0.00 0.00 41.18 2.08
2032 5557 3.534554 CTGTGCAACTGCCTGTGATATA 58.465 45.455 0.00 0.00 41.18 0.86
2100 5625 1.154413 CGCTGTGGCATTCGTTGTC 60.154 57.895 0.00 0.00 38.60 3.18
2139 5664 2.154462 CTCATGTTCGGCAACTCCTTT 58.846 47.619 0.00 0.00 33.17 3.11
2152 5677 4.627611 CGAGGATTGCATTTCTCATGTT 57.372 40.909 15.48 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.