Multiple sequence alignment - TraesCS5B01G349400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G349400 chr5B 100.000 3195 0 0 1 3195 530626210 530629404 0.000000e+00 5901.0
1 TraesCS5B01G349400 chr5B 89.571 652 34 16 1 644 530708063 530708688 0.000000e+00 797.0
2 TraesCS5B01G349400 chr5B 85.973 663 69 14 1 644 530967812 530967155 0.000000e+00 688.0
3 TraesCS5B01G349400 chr3B 94.979 956 38 5 645 1593 18765054 18766006 0.000000e+00 1491.0
4 TraesCS5B01G349400 chr3B 89.969 957 46 23 1640 2561 539069658 539070599 0.000000e+00 1190.0
5 TraesCS5B01G349400 chr3B 92.737 771 17 10 1590 2329 18766078 18766840 0.000000e+00 1077.0
6 TraesCS5B01G349400 chr3B 86.185 637 39 6 2608 3195 539070743 539071379 0.000000e+00 643.0
7 TraesCS5B01G349400 chr3B 85.828 628 40 14 2498 3087 18767126 18767742 3.500000e-174 621.0
8 TraesCS5B01G349400 chr3B 92.607 257 11 7 2348 2596 18766919 18767175 2.340000e-96 363.0
9 TraesCS5B01G349400 chr3B 100.000 32 0 0 2444 2475 18767058 18767089 3.440000e-05 60.2
10 TraesCS5B01G349400 chr2B 92.812 960 54 8 645 1593 769427567 769426612 0.000000e+00 1376.0
11 TraesCS5B01G349400 chr2B 92.500 960 57 7 645 1593 769477237 769476282 0.000000e+00 1360.0
12 TraesCS5B01G349400 chr2B 92.188 960 60 7 645 1593 769377261 769376306 0.000000e+00 1343.0
13 TraesCS5B01G349400 chr2B 96.148 701 22 1 1640 2335 769376173 769375473 0.000000e+00 1140.0
14 TraesCS5B01G349400 chr2B 95.720 701 25 1 1640 2335 769426479 769425779 0.000000e+00 1123.0
15 TraesCS5B01G349400 chr2B 84.462 753 54 19 2503 3195 769375113 769374364 0.000000e+00 684.0
16 TraesCS5B01G349400 chr2B 84.350 754 54 15 2503 3195 769474205 769473455 0.000000e+00 680.0
17 TraesCS5B01G349400 chr2B 86.441 649 50 11 2503 3116 769425313 769424668 0.000000e+00 676.0
18 TraesCS5B01G349400 chr2B 93.377 151 7 1 3045 3195 769424709 769424562 1.490000e-53 220.0
19 TraesCS5B01G349400 chr2B 90.299 134 7 5 2469 2596 769425386 769425253 1.520000e-38 171.0
20 TraesCS5B01G349400 chr2B 92.500 80 4 2 2348 2425 769474493 769474414 2.600000e-21 113.0
21 TraesCS5B01G349400 chr2B 92.405 79 5 1 2348 2425 769375400 769375322 9.370000e-21 111.0
22 TraesCS5B01G349400 chr2B 92.405 79 5 1 2348 2425 769425706 769425628 9.370000e-21 111.0
23 TraesCS5B01G349400 chr2B 91.837 49 4 0 2469 2517 769425492 769425444 5.720000e-08 69.4
24 TraesCS5B01G349400 chr2B 100.000 32 0 0 2444 2475 769375170 769375139 3.440000e-05 60.2
25 TraesCS5B01G349400 chr2B 100.000 32 0 0 2444 2475 769425370 769425339 3.440000e-05 60.2
26 TraesCS5B01G349400 chr2B 100.000 30 0 0 2444 2473 769375276 769375247 4.450000e-04 56.5
27 TraesCS5B01G349400 chr2B 100.000 30 0 0 2444 2473 769474368 769474339 4.450000e-04 56.5
28 TraesCS5B01G349400 chr3A 94.994 859 36 3 644 1496 747594312 747593455 0.000000e+00 1341.0
29 TraesCS5B01G349400 chr3A 92.825 878 21 15 2348 3195 747592455 747591590 0.000000e+00 1234.0
30 TraesCS5B01G349400 chr3A 97.756 713 16 0 1623 2335 747593240 747592528 0.000000e+00 1229.0
31 TraesCS5B01G349400 chr3A 93.662 710 38 2 1633 2335 547220909 547220200 0.000000e+00 1055.0
32 TraesCS5B01G349400 chr3A 100.000 39 0 0 1590 1628 747593316 747593278 4.420000e-09 73.1
33 TraesCS5B01G349400 chr2A 90.377 956 54 18 645 1593 735053949 735054873 0.000000e+00 1221.0
34 TraesCS5B01G349400 chr1D 91.941 881 42 8 645 1522 493864476 493863622 0.000000e+00 1206.0
35 TraesCS5B01G349400 chr1D 84.426 610 36 9 2608 3195 493862368 493861796 2.170000e-151 545.0
36 TraesCS5B01G349400 chr4B 96.154 702 19 3 1635 2329 382225294 382225994 0.000000e+00 1140.0
37 TraesCS5B01G349400 chr4B 93.804 581 28 6 1017 1593 382224619 382225195 0.000000e+00 867.0
38 TraesCS5B01G349400 chr4B 87.310 725 52 16 2503 3195 382226297 382227013 0.000000e+00 793.0
39 TraesCS5B01G349400 chr4B 93.671 79 4 1 2348 2425 382226073 382226151 2.010000e-22 117.0
40 TraesCS5B01G349400 chr4B 100.000 50 0 0 2962 3011 382226855 382226904 3.390000e-15 93.5
41 TraesCS5B01G349400 chr4B 100.000 32 0 0 2444 2475 382226240 382226271 3.440000e-05 60.2
42 TraesCS5B01G349400 chr6A 92.000 825 38 12 645 1462 98801159 98800356 0.000000e+00 1133.0
43 TraesCS5B01G349400 chr6A 88.518 479 32 6 1117 1593 99951747 99951290 2.780000e-155 558.0
44 TraesCS5B01G349400 chr6A 95.745 47 2 0 2965 3011 98798540 98798494 3.420000e-10 76.8
45 TraesCS5B01G349400 chr3D 94.897 725 29 3 1633 2350 19846206 19846929 0.000000e+00 1127.0
46 TraesCS5B01G349400 chr7A 91.758 825 42 10 645 1462 70233138 70232333 0.000000e+00 1123.0
47 TraesCS5B01G349400 chr7A 91.273 825 44 12 645 1462 460984427 460983624 0.000000e+00 1099.0
48 TraesCS5B01G349400 chr7A 93.296 716 43 1 1640 2350 460983200 460982485 0.000000e+00 1051.0
49 TraesCS5B01G349400 chr7A 89.423 104 11 0 1490 1593 70232248 70232145 7.190000e-27 132.0
50 TraesCS5B01G349400 chr4A 91.758 825 42 10 645 1462 24812179 24812984 0.000000e+00 1123.0
51 TraesCS5B01G349400 chr4A 84.906 636 43 14 2608 3190 715206792 715206157 7.630000e-166 593.0
52 TraesCS5B01G349400 chr4A 86.596 470 28 11 2748 3195 24814419 24814875 1.330000e-133 486.0
53 TraesCS5B01G349400 chr4A 86.916 107 9 2 1490 1593 24813069 24813173 7.240000e-22 115.0
54 TraesCS5B01G349400 chr4A 94.000 50 3 0 2962 3011 24814726 24814775 3.420000e-10 76.8
55 TraesCS5B01G349400 chr4A 96.875 32 1 0 2444 2475 715206988 715206957 2.000000e-03 54.7
56 TraesCS5B01G349400 chr1A 91.283 826 43 13 644 1462 548542621 548541818 0.000000e+00 1099.0
57 TraesCS5B01G349400 chr1A 95.745 47 2 0 2965 3011 24517773 24517727 3.420000e-10 76.8
58 TraesCS5B01G349400 chr1A 95.745 47 2 0 2965 3011 24525316 24525270 3.420000e-10 76.8
59 TraesCS5B01G349400 chr1B 93.408 713 33 4 1633 2335 564335231 564334523 0.000000e+00 1044.0
60 TraesCS5B01G349400 chr1B 83.699 638 42 13 2580 3195 659307890 659308487 2.170000e-151 545.0
61 TraesCS5B01G349400 chr1B 85.252 556 39 8 2662 3195 564334129 564333595 1.690000e-147 532.0
62 TraesCS5B01G349400 chr5D 93.981 648 27 7 1 641 436590749 436591391 0.000000e+00 970.0
63 TraesCS5B01G349400 chr5D 89.933 447 38 5 1 440 436801064 436800618 1.290000e-158 569.0
64 TraesCS5B01G349400 chr5A 93.634 644 26 5 1 644 551053631 551054259 0.000000e+00 948.0
65 TraesCS5B01G349400 chr5A 87.253 659 64 14 1 644 552071651 552070998 0.000000e+00 734.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G349400 chr5B 530626210 530629404 3194 False 5901.000000 5901 100.000000 1 3195 1 chr5B.!!$F1 3194
1 TraesCS5B01G349400 chr5B 530708063 530708688 625 False 797.000000 797 89.571000 1 644 1 chr5B.!!$F2 643
2 TraesCS5B01G349400 chr5B 530967155 530967812 657 True 688.000000 688 85.973000 1 644 1 chr5B.!!$R1 643
3 TraesCS5B01G349400 chr3B 539069658 539071379 1721 False 916.500000 1190 88.077000 1640 3195 2 chr3B.!!$F2 1555
4 TraesCS5B01G349400 chr3B 18765054 18767742 2688 False 722.440000 1491 93.230200 645 3087 5 chr3B.!!$F1 2442
5 TraesCS5B01G349400 chr2B 769374364 769377261 2897 True 565.783333 1343 94.200500 645 3195 6 chr2B.!!$R1 2550
6 TraesCS5B01G349400 chr2B 769473455 769477237 3782 True 552.375000 1360 92.337500 645 3195 4 chr2B.!!$R3 2550
7 TraesCS5B01G349400 chr2B 769424562 769427567 3005 True 475.825000 1376 92.861375 645 3195 8 chr2B.!!$R2 2550
8 TraesCS5B01G349400 chr3A 547220200 547220909 709 True 1055.000000 1055 93.662000 1633 2335 1 chr3A.!!$R1 702
9 TraesCS5B01G349400 chr3A 747591590 747594312 2722 True 969.275000 1341 96.393750 644 3195 4 chr3A.!!$R2 2551
10 TraesCS5B01G349400 chr2A 735053949 735054873 924 False 1221.000000 1221 90.377000 645 1593 1 chr2A.!!$F1 948
11 TraesCS5B01G349400 chr1D 493861796 493864476 2680 True 875.500000 1206 88.183500 645 3195 2 chr1D.!!$R1 2550
12 TraesCS5B01G349400 chr4B 382224619 382227013 2394 False 511.783333 1140 95.156500 1017 3195 6 chr4B.!!$F1 2178
13 TraesCS5B01G349400 chr6A 98798494 98801159 2665 True 604.900000 1133 93.872500 645 3011 2 chr6A.!!$R2 2366
14 TraesCS5B01G349400 chr3D 19846206 19846929 723 False 1127.000000 1127 94.897000 1633 2350 1 chr3D.!!$F1 717
15 TraesCS5B01G349400 chr7A 460982485 460984427 1942 True 1075.000000 1099 92.284500 645 2350 2 chr7A.!!$R2 1705
16 TraesCS5B01G349400 chr7A 70232145 70233138 993 True 627.500000 1123 90.590500 645 1593 2 chr7A.!!$R1 948
17 TraesCS5B01G349400 chr4A 24812179 24814875 2696 False 450.200000 1123 89.817500 645 3195 4 chr4A.!!$F1 2550
18 TraesCS5B01G349400 chr4A 715206157 715206988 831 True 323.850000 593 90.890500 2444 3190 2 chr4A.!!$R1 746
19 TraesCS5B01G349400 chr1A 548541818 548542621 803 True 1099.000000 1099 91.283000 644 1462 1 chr1A.!!$R3 818
20 TraesCS5B01G349400 chr1B 564333595 564335231 1636 True 788.000000 1044 89.330000 1633 3195 2 chr1B.!!$R1 1562
21 TraesCS5B01G349400 chr1B 659307890 659308487 597 False 545.000000 545 83.699000 2580 3195 1 chr1B.!!$F1 615
22 TraesCS5B01G349400 chr5D 436590749 436591391 642 False 970.000000 970 93.981000 1 641 1 chr5D.!!$F1 640
23 TraesCS5B01G349400 chr5A 551053631 551054259 628 False 948.000000 948 93.634000 1 644 1 chr5A.!!$F1 643
24 TraesCS5B01G349400 chr5A 552070998 552071651 653 True 734.000000 734 87.253000 1 644 1 chr5A.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 433 0.106769 TTGGCTCCTGAGTGCAACAA 60.107 50.0 0.00 0.00 41.43 2.83 F
499 503 0.114364 TCACCCTGCAGTGGAGAGTA 59.886 55.0 23.24 2.43 38.34 2.59 F
504 508 0.175302 CTGCAGTGGAGAGTAGCAGG 59.825 60.0 5.59 0.00 46.55 4.85 F
505 509 0.251787 TGCAGTGGAGAGTAGCAGGA 60.252 55.0 0.00 0.00 0.00 3.86 F
543 547 0.376852 TTCGTGTTTGTGCACTCTGC 59.623 50.0 19.41 6.38 45.29 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1997 0.105039 GGCCACTCTTGGTCTATCCG 59.895 60.000 0.0 0.0 45.07 4.18 R
1715 2015 1.661341 GAGAACTGCATAGCCACTGG 58.339 55.000 0.0 0.0 0.00 4.00 R
2022 2325 2.313342 AGCTGGTCCCTCTCTTTCTCTA 59.687 50.000 0.0 0.0 0.00 2.43 R
2070 2373 4.618920 TGTTTAAGTTGGTCCCTCTCTC 57.381 45.455 0.0 0.0 0.00 3.20 R
2561 4094 5.124645 TGCTGTGATGTGTGCAATATATGA 58.875 37.500 0.0 0.0 32.12 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 150 8.606754 AGCCATCTCTGATCAGTGTATATATT 57.393 34.615 21.92 2.76 0.00 1.28
147 151 8.694540 AGCCATCTCTGATCAGTGTATATATTC 58.305 37.037 21.92 6.20 0.00 1.75
148 152 8.473219 GCCATCTCTGATCAGTGTATATATTCA 58.527 37.037 21.92 1.47 0.00 2.57
151 155 9.766754 ATCTCTGATCAGTGTATATATTCAGGT 57.233 33.333 21.92 1.28 32.10 4.00
152 156 9.593565 TCTCTGATCAGTGTATATATTCAGGTT 57.406 33.333 21.92 0.00 32.10 3.50
153 157 9.636879 CTCTGATCAGTGTATATATTCAGGTTG 57.363 37.037 21.92 2.10 32.10 3.77
154 158 9.367160 TCTGATCAGTGTATATATTCAGGTTGA 57.633 33.333 21.92 6.22 32.10 3.18
155 159 9.987272 CTGATCAGTGTATATATTCAGGTTGAA 57.013 33.333 14.95 0.00 41.09 2.69
168 172 5.252969 TCAGGTTGAATAAATGCATGAGC 57.747 39.130 0.00 0.00 42.57 4.26
169 173 5.185442 TTCAGGTTGAATAAATGCATGAGCA 59.815 36.000 0.00 0.00 42.78 4.26
170 174 6.846380 TTCAGGTTGAATAAATGCATGAGCAC 60.846 38.462 0.00 0.00 41.97 4.40
171 175 9.138046 TTCAGGTTGAATAAATGCATGAGCACA 62.138 37.037 0.00 0.00 41.97 4.57
183 187 5.943706 GCATGAGCACAAATAGATGATCT 57.056 39.130 0.00 0.00 41.58 2.75
184 188 5.690816 GCATGAGCACAAATAGATGATCTG 58.309 41.667 4.96 0.00 41.58 2.90
185 189 5.238868 GCATGAGCACAAATAGATGATCTGT 59.761 40.000 4.96 0.00 41.58 3.41
186 190 6.426025 GCATGAGCACAAATAGATGATCTGTA 59.574 38.462 4.96 0.00 41.58 2.74
187 191 7.360185 GCATGAGCACAAATAGATGATCTGTAG 60.360 40.741 4.96 0.00 41.58 2.74
188 192 7.117285 TGAGCACAAATAGATGATCTGTAGT 57.883 36.000 4.96 0.00 32.43 2.73
189 193 7.559486 TGAGCACAAATAGATGATCTGTAGTT 58.441 34.615 4.96 0.00 32.43 2.24
190 194 8.695456 TGAGCACAAATAGATGATCTGTAGTTA 58.305 33.333 4.96 0.00 32.43 2.24
191 195 8.879342 AGCACAAATAGATGATCTGTAGTTAC 57.121 34.615 4.96 0.00 0.00 2.50
192 196 8.700051 AGCACAAATAGATGATCTGTAGTTACT 58.300 33.333 4.96 0.00 0.00 2.24
193 197 9.319143 GCACAAATAGATGATCTGTAGTTACTT 57.681 33.333 4.96 0.00 0.00 2.24
203 207 9.877178 ATGATCTGTAGTTACTTAAAAGAGTGG 57.123 33.333 0.00 0.00 0.00 4.00
204 208 8.867097 TGATCTGTAGTTACTTAAAAGAGTGGT 58.133 33.333 0.00 0.00 0.00 4.16
205 209 9.141400 GATCTGTAGTTACTTAAAAGAGTGGTG 57.859 37.037 0.00 0.00 0.00 4.17
206 210 8.015185 TCTGTAGTTACTTAAAAGAGTGGTGT 57.985 34.615 0.00 0.00 0.00 4.16
207 211 7.924412 TCTGTAGTTACTTAAAAGAGTGGTGTG 59.076 37.037 0.00 0.00 0.00 3.82
208 212 6.987992 TGTAGTTACTTAAAAGAGTGGTGTGG 59.012 38.462 0.00 0.00 0.00 4.17
209 213 5.997843 AGTTACTTAAAAGAGTGGTGTGGT 58.002 37.500 0.00 0.00 0.00 4.16
210 214 7.128234 AGTTACTTAAAAGAGTGGTGTGGTA 57.872 36.000 0.00 0.00 0.00 3.25
211 215 7.742767 AGTTACTTAAAAGAGTGGTGTGGTAT 58.257 34.615 0.00 0.00 0.00 2.73
212 216 8.873144 AGTTACTTAAAAGAGTGGTGTGGTATA 58.127 33.333 0.00 0.00 0.00 1.47
213 217 9.492973 GTTACTTAAAAGAGTGGTGTGGTATAA 57.507 33.333 0.00 0.00 0.00 0.98
214 218 9.715121 TTACTTAAAAGAGTGGTGTGGTATAAG 57.285 33.333 0.00 0.00 0.00 1.73
215 219 7.742767 ACTTAAAAGAGTGGTGTGGTATAAGT 58.257 34.615 0.00 0.00 0.00 2.24
216 220 8.873144 ACTTAAAAGAGTGGTGTGGTATAAGTA 58.127 33.333 0.00 0.00 30.52 2.24
217 221 9.367444 CTTAAAAGAGTGGTGTGGTATAAGTAG 57.633 37.037 0.00 0.00 0.00 2.57
218 222 7.549147 AAAAGAGTGGTGTGGTATAAGTAGA 57.451 36.000 0.00 0.00 0.00 2.59
219 223 7.549147 AAAGAGTGGTGTGGTATAAGTAGAA 57.451 36.000 0.00 0.00 0.00 2.10
220 224 7.549147 AAGAGTGGTGTGGTATAAGTAGAAA 57.451 36.000 0.00 0.00 0.00 2.52
221 225 6.932947 AGAGTGGTGTGGTATAAGTAGAAAC 58.067 40.000 0.00 0.00 0.00 2.78
222 226 6.724905 AGAGTGGTGTGGTATAAGTAGAAACT 59.275 38.462 0.00 0.00 37.65 2.66
223 227 6.932947 AGTGGTGTGGTATAAGTAGAAACTC 58.067 40.000 0.00 0.00 33.75 3.01
224 228 6.724905 AGTGGTGTGGTATAAGTAGAAACTCT 59.275 38.462 0.00 0.00 33.75 3.24
225 229 6.812160 GTGGTGTGGTATAAGTAGAAACTCTG 59.188 42.308 0.00 0.00 33.75 3.35
226 230 6.070995 TGGTGTGGTATAAGTAGAAACTCTGG 60.071 42.308 0.00 0.00 33.75 3.86
227 231 5.811100 GTGTGGTATAAGTAGAAACTCTGGC 59.189 44.000 0.00 0.00 33.75 4.85
228 232 5.720041 TGTGGTATAAGTAGAAACTCTGGCT 59.280 40.000 0.00 0.00 33.75 4.75
229 233 6.043411 GTGGTATAAGTAGAAACTCTGGCTG 58.957 44.000 0.00 0.00 33.75 4.85
230 234 5.128827 TGGTATAAGTAGAAACTCTGGCTGG 59.871 44.000 0.00 0.00 33.75 4.85
231 235 5.128991 GGTATAAGTAGAAACTCTGGCTGGT 59.871 44.000 0.00 0.00 33.75 4.00
232 236 3.409026 AAGTAGAAACTCTGGCTGGTG 57.591 47.619 0.00 0.00 33.75 4.17
233 237 1.625818 AGTAGAAACTCTGGCTGGTGG 59.374 52.381 0.00 0.00 0.00 4.61
234 238 0.324943 TAGAAACTCTGGCTGGTGGC 59.675 55.000 0.00 0.00 40.90 5.01
243 247 2.438795 GCTGGTGGCCCTTACCAA 59.561 61.111 14.01 0.00 46.81 3.67
244 248 1.678970 GCTGGTGGCCCTTACCAAG 60.679 63.158 14.01 9.50 46.81 3.61
245 249 1.000896 CTGGTGGCCCTTACCAAGG 60.001 63.158 14.01 0.82 46.81 3.61
257 261 4.781934 CCTTACCAAGGGTGATAAGAAGG 58.218 47.826 0.00 0.00 45.27 3.46
258 262 4.227527 CCTTACCAAGGGTGATAAGAAGGT 59.772 45.833 0.00 0.00 45.27 3.50
259 263 5.427481 CCTTACCAAGGGTGATAAGAAGGTA 59.573 44.000 0.00 0.00 45.27 3.08
260 264 6.408206 CCTTACCAAGGGTGATAAGAAGGTAG 60.408 46.154 0.00 0.00 45.27 3.18
261 265 3.200165 ACCAAGGGTGATAAGAAGGTAGC 59.800 47.826 0.00 0.00 32.98 3.58
262 266 3.199946 CCAAGGGTGATAAGAAGGTAGCA 59.800 47.826 0.00 0.00 0.00 3.49
263 267 4.324254 CCAAGGGTGATAAGAAGGTAGCAA 60.324 45.833 0.00 0.00 0.00 3.91
264 268 4.762289 AGGGTGATAAGAAGGTAGCAAG 57.238 45.455 0.00 0.00 0.00 4.01
265 269 4.362677 AGGGTGATAAGAAGGTAGCAAGA 58.637 43.478 0.00 0.00 0.00 3.02
266 270 4.783227 AGGGTGATAAGAAGGTAGCAAGAA 59.217 41.667 0.00 0.00 0.00 2.52
267 271 5.430089 AGGGTGATAAGAAGGTAGCAAGAAT 59.570 40.000 0.00 0.00 0.00 2.40
268 272 5.529060 GGGTGATAAGAAGGTAGCAAGAATG 59.471 44.000 0.00 0.00 0.00 2.67
290 294 2.509916 GGAGCAGCCCATCTCCTG 59.490 66.667 1.30 0.00 44.19 3.86
291 295 2.509916 GAGCAGCCCATCTCCTGG 59.490 66.667 0.00 0.00 45.51 4.45
296 300 3.415087 GCCCATCTCCTGGCCTGT 61.415 66.667 3.32 0.00 44.46 4.00
297 301 2.593978 CCCATCTCCTGGCCTGTG 59.406 66.667 3.32 0.00 44.46 3.66
298 302 1.997311 CCCATCTCCTGGCCTGTGA 60.997 63.158 3.32 4.61 44.46 3.58
299 303 1.565390 CCCATCTCCTGGCCTGTGAA 61.565 60.000 3.32 0.00 44.46 3.18
300 304 0.393537 CCATCTCCTGGCCTGTGAAC 60.394 60.000 3.32 0.00 38.47 3.18
301 305 0.617413 CATCTCCTGGCCTGTGAACT 59.383 55.000 3.32 0.00 0.00 3.01
302 306 1.833630 CATCTCCTGGCCTGTGAACTA 59.166 52.381 3.32 0.00 0.00 2.24
303 307 1.561643 TCTCCTGGCCTGTGAACTAG 58.438 55.000 3.32 0.00 0.00 2.57
304 308 0.539051 CTCCTGGCCTGTGAACTAGG 59.461 60.000 3.32 0.00 38.39 3.02
305 309 0.116342 TCCTGGCCTGTGAACTAGGA 59.884 55.000 3.32 1.44 37.52 2.94
306 310 0.539051 CCTGGCCTGTGAACTAGGAG 59.461 60.000 3.32 0.00 37.52 3.69
307 311 0.107945 CTGGCCTGTGAACTAGGAGC 60.108 60.000 3.32 0.00 37.52 4.70
308 312 0.545309 TGGCCTGTGAACTAGGAGCT 60.545 55.000 3.32 0.00 37.52 4.09
309 313 0.176910 GGCCTGTGAACTAGGAGCTC 59.823 60.000 4.71 4.71 37.52 4.09
310 314 0.176910 GCCTGTGAACTAGGAGCTCC 59.823 60.000 26.22 26.22 37.52 4.70
311 315 0.457851 CCTGTGAACTAGGAGCTCCG 59.542 60.000 26.95 16.26 42.08 4.63
312 316 1.464734 CTGTGAACTAGGAGCTCCGA 58.535 55.000 26.95 21.21 42.08 4.55
313 317 1.403679 CTGTGAACTAGGAGCTCCGAG 59.596 57.143 33.84 33.84 43.35 4.63
314 318 1.004394 TGTGAACTAGGAGCTCCGAGA 59.996 52.381 39.69 23.32 40.66 4.04
315 319 2.093106 GTGAACTAGGAGCTCCGAGAA 58.907 52.381 39.69 24.95 40.66 2.87
316 320 2.691011 GTGAACTAGGAGCTCCGAGAAT 59.309 50.000 39.69 29.26 40.66 2.40
317 321 2.952978 TGAACTAGGAGCTCCGAGAATC 59.047 50.000 39.69 33.37 40.66 2.52
332 336 4.985538 GAGAATCGGTTGAGGTAGAAGA 57.014 45.455 0.00 0.00 0.00 2.87
333 337 5.326200 GAGAATCGGTTGAGGTAGAAGAA 57.674 43.478 0.00 0.00 0.00 2.52
334 338 5.074584 AGAATCGGTTGAGGTAGAAGAAC 57.925 43.478 0.00 0.00 0.00 3.01
335 339 3.505464 ATCGGTTGAGGTAGAAGAACG 57.495 47.619 0.00 0.00 0.00 3.95
336 340 1.068055 TCGGTTGAGGTAGAAGAACGC 60.068 52.381 0.00 0.00 0.00 4.84
337 341 1.336517 CGGTTGAGGTAGAAGAACGCA 60.337 52.381 0.00 0.00 0.00 5.24
338 342 2.762745 GGTTGAGGTAGAAGAACGCAA 58.237 47.619 0.00 0.00 0.00 4.85
339 343 3.335579 GGTTGAGGTAGAAGAACGCAAT 58.664 45.455 0.00 0.00 0.00 3.56
340 344 3.125316 GGTTGAGGTAGAAGAACGCAATG 59.875 47.826 0.00 0.00 0.00 2.82
341 345 2.972625 TGAGGTAGAAGAACGCAATGG 58.027 47.619 0.00 0.00 0.00 3.16
342 346 2.280628 GAGGTAGAAGAACGCAATGGG 58.719 52.381 0.00 0.00 0.00 4.00
343 347 1.906574 AGGTAGAAGAACGCAATGGGA 59.093 47.619 3.77 0.00 0.00 4.37
344 348 2.304761 AGGTAGAAGAACGCAATGGGAA 59.695 45.455 3.77 0.00 0.00 3.97
345 349 3.054361 AGGTAGAAGAACGCAATGGGAAT 60.054 43.478 3.77 0.00 0.00 3.01
346 350 3.065371 GGTAGAAGAACGCAATGGGAATG 59.935 47.826 3.77 0.00 0.00 2.67
347 351 1.474077 AGAAGAACGCAATGGGAATGC 59.526 47.619 3.77 0.00 40.41 3.56
348 352 0.532115 AAGAACGCAATGGGAATGCC 59.468 50.000 3.77 0.00 40.72 4.40
374 378 3.290308 CGTAGCAGTCAGGTATGATCC 57.710 52.381 0.00 0.00 39.09 3.36
375 379 2.623416 CGTAGCAGTCAGGTATGATCCA 59.377 50.000 0.00 0.00 39.09 3.41
376 380 3.256879 CGTAGCAGTCAGGTATGATCCAT 59.743 47.826 0.00 0.00 39.09 3.41
377 381 4.617067 CGTAGCAGTCAGGTATGATCCATC 60.617 50.000 0.00 0.00 39.09 3.51
378 382 3.585360 AGCAGTCAGGTATGATCCATCT 58.415 45.455 0.00 0.00 37.87 2.90
379 383 3.577848 AGCAGTCAGGTATGATCCATCTC 59.422 47.826 0.00 0.00 37.87 2.75
380 384 3.577848 GCAGTCAGGTATGATCCATCTCT 59.422 47.826 0.00 0.00 37.87 3.10
381 385 4.040217 GCAGTCAGGTATGATCCATCTCTT 59.960 45.833 0.00 0.00 37.87 2.85
382 386 5.782047 CAGTCAGGTATGATCCATCTCTTC 58.218 45.833 0.00 0.00 37.87 2.87
383 387 4.522405 AGTCAGGTATGATCCATCTCTTCG 59.478 45.833 0.00 0.00 37.87 3.79
384 388 4.279671 GTCAGGTATGATCCATCTCTTCGT 59.720 45.833 0.00 0.00 37.87 3.85
385 389 4.520874 TCAGGTATGATCCATCTCTTCGTC 59.479 45.833 0.00 0.00 0.00 4.20
386 390 3.829601 AGGTATGATCCATCTCTTCGTCC 59.170 47.826 0.00 0.00 0.00 4.79
387 391 3.366476 GGTATGATCCATCTCTTCGTCCG 60.366 52.174 0.00 0.00 0.00 4.79
388 392 2.052782 TGATCCATCTCTTCGTCCGA 57.947 50.000 0.00 0.00 0.00 4.55
389 393 1.676529 TGATCCATCTCTTCGTCCGAC 59.323 52.381 0.00 0.00 0.00 4.79
390 394 1.676529 GATCCATCTCTTCGTCCGACA 59.323 52.381 0.00 0.00 0.00 4.35
391 395 1.541379 TCCATCTCTTCGTCCGACAA 58.459 50.000 0.00 0.00 0.00 3.18
392 396 1.890489 TCCATCTCTTCGTCCGACAAA 59.110 47.619 0.00 0.00 0.00 2.83
393 397 2.496070 TCCATCTCTTCGTCCGACAAAT 59.504 45.455 0.00 0.00 0.00 2.32
394 398 3.056107 TCCATCTCTTCGTCCGACAAATT 60.056 43.478 0.00 0.00 0.00 1.82
395 399 4.158949 TCCATCTCTTCGTCCGACAAATTA 59.841 41.667 0.00 0.00 0.00 1.40
396 400 5.050490 CCATCTCTTCGTCCGACAAATTAT 58.950 41.667 0.00 0.00 0.00 1.28
397 401 5.523916 CCATCTCTTCGTCCGACAAATTATT 59.476 40.000 0.00 0.00 0.00 1.40
398 402 6.414079 CATCTCTTCGTCCGACAAATTATTG 58.586 40.000 0.00 0.00 42.46 1.90
413 417 7.703298 CAAATTATTGTGCATGGATACTTGG 57.297 36.000 0.00 0.00 41.81 3.61
414 418 4.916983 TTATTGTGCATGGATACTTGGC 57.083 40.909 0.00 0.00 41.81 4.52
415 419 2.512692 TTGTGCATGGATACTTGGCT 57.487 45.000 0.00 0.00 41.81 4.75
416 420 2.042686 TGTGCATGGATACTTGGCTC 57.957 50.000 0.00 0.00 41.81 4.70
417 421 1.312815 GTGCATGGATACTTGGCTCC 58.687 55.000 0.00 0.00 41.81 4.70
418 422 1.133976 GTGCATGGATACTTGGCTCCT 60.134 52.381 0.00 0.00 41.81 3.69
419 423 1.134007 TGCATGGATACTTGGCTCCTG 60.134 52.381 0.00 0.00 41.81 3.86
420 424 1.141657 GCATGGATACTTGGCTCCTGA 59.858 52.381 0.00 0.00 41.81 3.86
421 425 2.809665 GCATGGATACTTGGCTCCTGAG 60.810 54.545 0.00 0.00 41.81 3.35
422 426 2.254152 TGGATACTTGGCTCCTGAGT 57.746 50.000 0.00 2.22 37.61 3.41
423 427 1.833630 TGGATACTTGGCTCCTGAGTG 59.166 52.381 0.00 0.00 37.61 3.51
424 428 1.474143 GGATACTTGGCTCCTGAGTGC 60.474 57.143 0.00 0.00 0.00 4.40
425 429 1.208052 GATACTTGGCTCCTGAGTGCA 59.792 52.381 0.00 0.00 34.10 4.57
426 430 1.055849 TACTTGGCTCCTGAGTGCAA 58.944 50.000 0.00 0.00 34.10 4.08
427 431 0.536006 ACTTGGCTCCTGAGTGCAAC 60.536 55.000 0.00 0.00 34.10 4.17
428 432 0.535780 CTTGGCTCCTGAGTGCAACA 60.536 55.000 0.00 0.00 41.43 3.33
429 433 0.106769 TTGGCTCCTGAGTGCAACAA 60.107 50.000 0.00 0.00 41.43 2.83
430 434 0.819259 TGGCTCCTGAGTGCAACAAC 60.819 55.000 0.00 0.00 41.43 3.32
431 435 0.819259 GGCTCCTGAGTGCAACAACA 60.819 55.000 0.00 0.00 41.43 3.33
432 436 0.590195 GCTCCTGAGTGCAACAACAG 59.410 55.000 0.00 0.00 41.43 3.16
433 437 1.959042 CTCCTGAGTGCAACAACAGT 58.041 50.000 0.00 0.00 41.43 3.55
434 438 1.600957 CTCCTGAGTGCAACAACAGTG 59.399 52.381 0.00 0.00 41.43 3.66
435 439 1.209261 TCCTGAGTGCAACAACAGTGA 59.791 47.619 0.00 0.00 41.43 3.41
436 440 2.016318 CCTGAGTGCAACAACAGTGAA 58.984 47.619 0.00 0.00 41.43 3.18
437 441 2.223340 CCTGAGTGCAACAACAGTGAAC 60.223 50.000 0.00 0.00 41.43 3.18
438 442 2.419673 CTGAGTGCAACAACAGTGAACA 59.580 45.455 0.00 0.00 41.43 3.18
439 443 2.816672 TGAGTGCAACAACAGTGAACAA 59.183 40.909 0.00 0.00 41.43 2.83
440 444 3.443329 TGAGTGCAACAACAGTGAACAAT 59.557 39.130 0.00 0.00 41.43 2.71
441 445 4.082300 TGAGTGCAACAACAGTGAACAATT 60.082 37.500 0.00 0.00 41.43 2.32
442 446 5.124617 TGAGTGCAACAACAGTGAACAATTA 59.875 36.000 0.00 0.00 41.43 1.40
443 447 5.960113 AGTGCAACAACAGTGAACAATTAA 58.040 33.333 0.00 0.00 41.43 1.40
444 448 6.393990 AGTGCAACAACAGTGAACAATTAAA 58.606 32.000 0.00 0.00 41.43 1.52
445 449 7.041107 AGTGCAACAACAGTGAACAATTAAAT 58.959 30.769 0.00 0.00 41.43 1.40
446 450 7.548780 AGTGCAACAACAGTGAACAATTAAATT 59.451 29.630 0.00 0.00 41.43 1.82
447 451 8.812329 GTGCAACAACAGTGAACAATTAAATTA 58.188 29.630 0.00 0.00 36.32 1.40
448 452 9.029243 TGCAACAACAGTGAACAATTAAATTAG 57.971 29.630 0.00 0.00 0.00 1.73
449 453 8.487176 GCAACAACAGTGAACAATTAAATTAGG 58.513 33.333 0.00 0.00 0.00 2.69
450 454 9.743057 CAACAACAGTGAACAATTAAATTAGGA 57.257 29.630 0.00 0.00 0.00 2.94
451 455 9.744468 AACAACAGTGAACAATTAAATTAGGAC 57.256 29.630 0.00 0.00 0.00 3.85
452 456 9.131791 ACAACAGTGAACAATTAAATTAGGACT 57.868 29.630 0.00 0.00 0.00 3.85
453 457 9.965824 CAACAGTGAACAATTAAATTAGGACTT 57.034 29.630 0.00 0.00 0.00 3.01
468 472 9.634021 AAATTAGGACTTTTTCTCTGAACTCTT 57.366 29.630 0.00 0.00 0.00 2.85
469 473 8.840833 ATTAGGACTTTTTCTCTGAACTCTTC 57.159 34.615 0.00 0.00 0.00 2.87
470 474 6.493189 AGGACTTTTTCTCTGAACTCTTCT 57.507 37.500 0.00 0.00 0.00 2.85
471 475 6.894682 AGGACTTTTTCTCTGAACTCTTCTT 58.105 36.000 0.00 0.00 0.00 2.52
472 476 7.342581 AGGACTTTTTCTCTGAACTCTTCTTT 58.657 34.615 0.00 0.00 0.00 2.52
473 477 7.497579 AGGACTTTTTCTCTGAACTCTTCTTTC 59.502 37.037 0.00 0.00 0.00 2.62
474 478 7.497579 GGACTTTTTCTCTGAACTCTTCTTTCT 59.502 37.037 0.00 0.00 0.00 2.52
475 479 8.800370 ACTTTTTCTCTGAACTCTTCTTTCTT 57.200 30.769 0.00 0.00 0.00 2.52
476 480 9.237187 ACTTTTTCTCTGAACTCTTCTTTCTTT 57.763 29.630 0.00 0.00 0.00 2.52
478 482 9.846248 TTTTTCTCTGAACTCTTCTTTCTTTTG 57.154 29.630 0.00 0.00 0.00 2.44
479 483 8.792830 TTTCTCTGAACTCTTCTTTCTTTTGA 57.207 30.769 0.00 0.00 0.00 2.69
480 484 8.970859 TTCTCTGAACTCTTCTTTCTTTTGAT 57.029 30.769 0.00 0.00 0.00 2.57
481 485 8.600449 TCTCTGAACTCTTCTTTCTTTTGATC 57.400 34.615 0.00 0.00 0.00 2.92
482 486 8.206867 TCTCTGAACTCTTCTTTCTTTTGATCA 58.793 33.333 0.00 0.00 0.00 2.92
483 487 8.147642 TCTGAACTCTTCTTTCTTTTGATCAC 57.852 34.615 0.00 0.00 0.00 3.06
484 488 7.227512 TCTGAACTCTTCTTTCTTTTGATCACC 59.772 37.037 0.00 0.00 0.00 4.02
485 489 6.263168 TGAACTCTTCTTTCTTTTGATCACCC 59.737 38.462 0.00 0.00 0.00 4.61
486 490 5.946486 ACTCTTCTTTCTTTTGATCACCCT 58.054 37.500 0.00 0.00 0.00 4.34
487 491 5.767168 ACTCTTCTTTCTTTTGATCACCCTG 59.233 40.000 0.00 0.00 0.00 4.45
488 492 4.520492 TCTTCTTTCTTTTGATCACCCTGC 59.480 41.667 0.00 0.00 0.00 4.85
489 493 3.831323 TCTTTCTTTTGATCACCCTGCA 58.169 40.909 0.00 0.00 0.00 4.41
490 494 3.822735 TCTTTCTTTTGATCACCCTGCAG 59.177 43.478 6.78 6.78 0.00 4.41
491 495 2.957402 TCTTTTGATCACCCTGCAGT 57.043 45.000 13.81 0.00 0.00 4.40
492 496 2.507484 TCTTTTGATCACCCTGCAGTG 58.493 47.619 13.81 3.15 39.20 3.66
493 497 1.542915 CTTTTGATCACCCTGCAGTGG 59.457 52.381 13.81 15.65 38.34 4.00
494 498 0.770499 TTTGATCACCCTGCAGTGGA 59.230 50.000 23.24 13.46 38.34 4.02
495 499 0.325933 TTGATCACCCTGCAGTGGAG 59.674 55.000 23.24 16.97 38.34 3.86
496 500 0.545071 TGATCACCCTGCAGTGGAGA 60.545 55.000 23.24 20.75 38.34 3.71
497 501 0.177604 GATCACCCTGCAGTGGAGAG 59.822 60.000 23.24 1.61 38.34 3.20
498 502 0.546267 ATCACCCTGCAGTGGAGAGT 60.546 55.000 23.24 2.41 38.34 3.24
499 503 0.114364 TCACCCTGCAGTGGAGAGTA 59.886 55.000 23.24 2.43 38.34 2.59
500 504 0.534412 CACCCTGCAGTGGAGAGTAG 59.466 60.000 23.24 1.55 33.95 2.57
501 505 1.261238 ACCCTGCAGTGGAGAGTAGC 61.261 60.000 23.24 0.00 0.00 3.58
502 506 1.260538 CCCTGCAGTGGAGAGTAGCA 61.261 60.000 14.03 0.00 0.00 3.49
503 507 3.737127 CTGCAGTGGAGAGTAGCAG 57.263 57.895 5.59 0.00 45.44 4.24
504 508 0.175302 CTGCAGTGGAGAGTAGCAGG 59.825 60.000 5.59 0.00 46.55 4.85
505 509 0.251787 TGCAGTGGAGAGTAGCAGGA 60.252 55.000 0.00 0.00 0.00 3.86
506 510 0.459489 GCAGTGGAGAGTAGCAGGAG 59.541 60.000 0.00 0.00 0.00 3.69
507 511 1.957591 GCAGTGGAGAGTAGCAGGAGA 60.958 57.143 0.00 0.00 0.00 3.71
508 512 2.023673 CAGTGGAGAGTAGCAGGAGAG 58.976 57.143 0.00 0.00 0.00 3.20
509 513 0.744281 GTGGAGAGTAGCAGGAGAGC 59.256 60.000 0.00 0.00 0.00 4.09
511 515 1.847088 TGGAGAGTAGCAGGAGAGCTA 59.153 52.381 0.00 0.00 44.50 3.32
512 516 2.158682 TGGAGAGTAGCAGGAGAGCTAG 60.159 54.545 0.00 0.00 46.90 3.42
513 517 2.105821 GGAGAGTAGCAGGAGAGCTAGA 59.894 54.545 0.00 0.00 46.90 2.43
514 518 3.403038 GAGAGTAGCAGGAGAGCTAGAG 58.597 54.545 0.00 0.00 46.90 2.43
515 519 3.045634 AGAGTAGCAGGAGAGCTAGAGA 58.954 50.000 0.00 0.00 46.90 3.10
516 520 3.652869 AGAGTAGCAGGAGAGCTAGAGAT 59.347 47.826 0.00 0.00 46.90 2.75
517 521 3.753272 GAGTAGCAGGAGAGCTAGAGATG 59.247 52.174 0.00 0.00 46.90 2.90
518 522 2.754012 AGCAGGAGAGCTAGAGATGT 57.246 50.000 0.00 0.00 44.50 3.06
519 523 2.586425 AGCAGGAGAGCTAGAGATGTC 58.414 52.381 0.00 0.00 44.50 3.06
520 524 2.091939 AGCAGGAGAGCTAGAGATGTCA 60.092 50.000 0.00 0.00 44.50 3.58
521 525 2.034558 GCAGGAGAGCTAGAGATGTCAC 59.965 54.545 0.00 0.00 0.00 3.67
522 526 2.622942 CAGGAGAGCTAGAGATGTCACC 59.377 54.545 0.00 0.00 0.00 4.02
523 527 2.243478 AGGAGAGCTAGAGATGTCACCA 59.757 50.000 0.00 0.00 0.00 4.17
524 528 3.117169 AGGAGAGCTAGAGATGTCACCAT 60.117 47.826 0.00 0.00 0.00 3.55
525 529 3.640967 GGAGAGCTAGAGATGTCACCATT 59.359 47.826 0.00 0.00 0.00 3.16
526 530 4.261994 GGAGAGCTAGAGATGTCACCATTC 60.262 50.000 0.00 0.00 0.00 2.67
527 531 3.317711 AGAGCTAGAGATGTCACCATTCG 59.682 47.826 0.00 0.00 0.00 3.34
528 532 3.027412 AGCTAGAGATGTCACCATTCGT 58.973 45.455 0.00 0.00 0.00 3.85
529 533 3.119291 GCTAGAGATGTCACCATTCGTG 58.881 50.000 0.00 0.00 44.50 4.35
530 534 3.429547 GCTAGAGATGTCACCATTCGTGT 60.430 47.826 0.00 0.00 43.51 4.49
531 535 3.685139 AGAGATGTCACCATTCGTGTT 57.315 42.857 0.00 0.00 43.51 3.32
532 536 4.008074 AGAGATGTCACCATTCGTGTTT 57.992 40.909 0.00 0.00 43.51 2.83
533 537 3.748048 AGAGATGTCACCATTCGTGTTTG 59.252 43.478 0.00 0.00 43.51 2.93
534 538 3.476552 AGATGTCACCATTCGTGTTTGT 58.523 40.909 0.00 0.00 43.51 2.83
535 539 3.250762 AGATGTCACCATTCGTGTTTGTG 59.749 43.478 0.00 0.00 43.51 3.33
536 540 1.064803 TGTCACCATTCGTGTTTGTGC 59.935 47.619 0.00 0.00 43.51 4.57
537 541 1.064803 GTCACCATTCGTGTTTGTGCA 59.935 47.619 0.00 0.00 43.51 4.57
538 542 1.064803 TCACCATTCGTGTTTGTGCAC 59.935 47.619 10.75 10.75 43.51 4.57
539 543 1.065401 CACCATTCGTGTTTGTGCACT 59.935 47.619 19.41 0.00 37.73 4.40
540 544 1.333619 ACCATTCGTGTTTGTGCACTC 59.666 47.619 19.41 9.15 37.24 3.51
541 545 1.603802 CCATTCGTGTTTGTGCACTCT 59.396 47.619 19.41 0.00 37.24 3.24
542 546 2.602933 CCATTCGTGTTTGTGCACTCTG 60.603 50.000 19.41 2.24 37.24 3.35
543 547 0.376852 TTCGTGTTTGTGCACTCTGC 59.623 50.000 19.41 6.38 45.29 4.26
553 557 2.250646 GCACTCTGCAGCAATGTCA 58.749 52.632 9.47 0.00 44.26 3.58
554 558 0.594602 GCACTCTGCAGCAATGTCAA 59.405 50.000 9.47 0.00 44.26 3.18
555 559 1.201647 GCACTCTGCAGCAATGTCAAT 59.798 47.619 9.47 0.00 44.26 2.57
556 560 2.421073 GCACTCTGCAGCAATGTCAATA 59.579 45.455 9.47 0.00 44.26 1.90
557 561 3.487042 GCACTCTGCAGCAATGTCAATAG 60.487 47.826 9.47 0.00 44.26 1.73
558 562 2.681848 ACTCTGCAGCAATGTCAATAGC 59.318 45.455 9.47 0.00 0.00 2.97
559 563 1.667212 TCTGCAGCAATGTCAATAGCG 59.333 47.619 9.47 0.00 0.00 4.26
560 564 0.734309 TGCAGCAATGTCAATAGCGG 59.266 50.000 0.00 0.00 0.00 5.52
561 565 1.016627 GCAGCAATGTCAATAGCGGA 58.983 50.000 0.00 0.00 0.00 5.54
562 566 1.268234 GCAGCAATGTCAATAGCGGAC 60.268 52.381 0.00 0.00 35.83 4.79
563 567 2.283298 CAGCAATGTCAATAGCGGACT 58.717 47.619 0.00 0.00 36.26 3.85
564 568 2.679837 CAGCAATGTCAATAGCGGACTT 59.320 45.455 0.00 0.00 36.26 3.01
565 569 2.939103 AGCAATGTCAATAGCGGACTTC 59.061 45.455 0.00 0.00 36.26 3.01
566 570 2.939103 GCAATGTCAATAGCGGACTTCT 59.061 45.455 0.00 0.00 36.26 2.85
567 571 3.242543 GCAATGTCAATAGCGGACTTCTG 60.243 47.826 0.00 0.00 36.26 3.02
568 572 2.672961 TGTCAATAGCGGACTTCTGG 57.327 50.000 0.00 0.00 36.26 3.86
569 573 1.899814 TGTCAATAGCGGACTTCTGGT 59.100 47.619 0.00 0.00 36.26 4.00
570 574 3.093814 TGTCAATAGCGGACTTCTGGTA 58.906 45.455 0.00 0.00 39.25 3.25
571 575 3.512329 TGTCAATAGCGGACTTCTGGTAA 59.488 43.478 1.24 0.00 38.52 2.85
572 576 3.864003 GTCAATAGCGGACTTCTGGTAAC 59.136 47.826 1.24 0.00 38.52 2.50
573 577 3.118884 TCAATAGCGGACTTCTGGTAACC 60.119 47.826 1.24 0.00 38.52 2.85
574 578 0.813184 TAGCGGACTTCTGGTAACCG 59.187 55.000 0.00 0.00 45.26 4.44
575 579 0.896940 AGCGGACTTCTGGTAACCGA 60.897 55.000 0.00 0.00 45.31 4.69
576 580 0.735287 GCGGACTTCTGGTAACCGAC 60.735 60.000 0.00 0.00 45.31 4.79
577 581 0.599558 CGGACTTCTGGTAACCGACA 59.400 55.000 0.00 0.00 45.31 4.35
578 582 1.000060 CGGACTTCTGGTAACCGACAA 60.000 52.381 0.00 0.00 45.31 3.18
579 583 2.410939 GGACTTCTGGTAACCGACAAC 58.589 52.381 0.00 0.00 0.00 3.32
580 584 2.224113 GGACTTCTGGTAACCGACAACA 60.224 50.000 0.00 0.00 0.00 3.33
581 585 3.057734 GACTTCTGGTAACCGACAACAG 58.942 50.000 0.00 0.00 0.00 3.16
582 586 2.433239 ACTTCTGGTAACCGACAACAGT 59.567 45.455 0.00 0.00 0.00 3.55
583 587 3.638160 ACTTCTGGTAACCGACAACAGTA 59.362 43.478 0.00 0.00 0.00 2.74
584 588 4.099881 ACTTCTGGTAACCGACAACAGTAA 59.900 41.667 0.00 0.00 0.00 2.24
585 589 3.981211 TCTGGTAACCGACAACAGTAAC 58.019 45.455 0.00 0.00 0.00 2.50
586 590 2.727798 CTGGTAACCGACAACAGTAACG 59.272 50.000 0.00 0.00 0.00 3.18
587 591 2.360483 TGGTAACCGACAACAGTAACGA 59.640 45.455 0.00 0.00 0.00 3.85
588 592 2.982470 GGTAACCGACAACAGTAACGAG 59.018 50.000 0.00 0.00 0.00 4.18
589 593 1.494824 AACCGACAACAGTAACGAGC 58.505 50.000 0.00 0.00 0.00 5.03
590 594 0.672342 ACCGACAACAGTAACGAGCT 59.328 50.000 0.00 0.00 0.00 4.09
591 595 1.335689 ACCGACAACAGTAACGAGCTC 60.336 52.381 2.73 2.73 0.00 4.09
592 596 0.975544 CGACAACAGTAACGAGCTCG 59.024 55.000 33.45 33.45 46.33 5.03
593 597 0.708918 GACAACAGTAACGAGCTCGC 59.291 55.000 34.83 19.34 44.43 5.03
594 598 0.666577 ACAACAGTAACGAGCTCGCC 60.667 55.000 34.83 22.35 44.43 5.54
595 599 1.080025 AACAGTAACGAGCTCGCCC 60.080 57.895 34.83 21.99 44.43 6.13
596 600 2.202756 CAGTAACGAGCTCGCCCC 60.203 66.667 34.83 21.64 44.43 5.80
597 601 2.362632 AGTAACGAGCTCGCCCCT 60.363 61.111 34.83 23.45 44.43 4.79
598 602 2.202756 GTAACGAGCTCGCCCCTG 60.203 66.667 34.83 9.33 44.43 4.45
599 603 3.458163 TAACGAGCTCGCCCCTGG 61.458 66.667 34.83 8.55 44.43 4.45
601 605 2.842188 TAACGAGCTCGCCCCTGGTA 62.842 60.000 34.83 13.05 44.43 3.25
602 606 3.458163 CGAGCTCGCCCCTGGTAA 61.458 66.667 25.07 0.00 0.00 2.85
603 607 2.501610 GAGCTCGCCCCTGGTAAG 59.498 66.667 0.00 0.00 0.00 2.34
604 608 3.741830 GAGCTCGCCCCTGGTAAGC 62.742 68.421 0.00 0.00 34.29 3.09
605 609 3.787001 GCTCGCCCCTGGTAAGCT 61.787 66.667 0.00 0.00 32.41 3.74
606 610 2.501610 CTCGCCCCTGGTAAGCTC 59.498 66.667 0.00 0.00 0.00 4.09
607 611 3.432051 CTCGCCCCTGGTAAGCTCG 62.432 68.421 0.00 0.00 0.00 5.03
608 612 4.530857 CGCCCCTGGTAAGCTCGG 62.531 72.222 0.00 0.00 0.00 4.63
609 613 3.400054 GCCCCTGGTAAGCTCGGT 61.400 66.667 0.00 0.00 0.00 4.69
610 614 2.584608 CCCCTGGTAAGCTCGGTG 59.415 66.667 0.00 0.00 0.00 4.94
611 615 2.584608 CCCTGGTAAGCTCGGTGG 59.415 66.667 0.00 0.00 0.00 4.61
612 616 1.987855 CCCTGGTAAGCTCGGTGGA 60.988 63.158 0.00 0.00 0.00 4.02
613 617 1.218316 CCTGGTAAGCTCGGTGGAC 59.782 63.158 0.00 0.00 0.00 4.02
614 618 1.258445 CCTGGTAAGCTCGGTGGACT 61.258 60.000 0.00 0.00 0.00 3.85
615 619 0.608640 CTGGTAAGCTCGGTGGACTT 59.391 55.000 0.00 0.00 0.00 3.01
616 620 1.002087 CTGGTAAGCTCGGTGGACTTT 59.998 52.381 0.00 0.00 0.00 2.66
617 621 1.270625 TGGTAAGCTCGGTGGACTTTG 60.271 52.381 0.00 0.00 0.00 2.77
618 622 0.796927 GTAAGCTCGGTGGACTTTGC 59.203 55.000 0.00 0.00 0.00 3.68
619 623 0.394938 TAAGCTCGGTGGACTTTGCA 59.605 50.000 0.00 0.00 0.00 4.08
620 624 1.166531 AAGCTCGGTGGACTTTGCAC 61.167 55.000 0.00 0.00 38.03 4.57
625 629 2.639286 GTGGACTTTGCACCGCAG 59.361 61.111 0.01 0.00 40.61 5.18
626 630 3.286751 TGGACTTTGCACCGCAGC 61.287 61.111 0.00 0.00 40.61 5.25
627 631 4.389576 GGACTTTGCACCGCAGCG 62.390 66.667 8.18 8.18 40.61 5.18
640 644 4.457496 CAGCGCCCATGTCGGAGT 62.457 66.667 2.29 0.00 36.56 3.85
641 645 2.758327 AGCGCCCATGTCGGAGTA 60.758 61.111 2.29 0.00 36.56 2.59
642 646 2.279517 GCGCCCATGTCGGAGTAG 60.280 66.667 0.00 0.00 36.56 2.57
703 707 7.155328 AGGATAACAGATCGGTATCACATTTC 58.845 38.462 18.11 5.95 34.28 2.17
776 780 3.035576 GACGCTGCGTTTTAGCCCC 62.036 63.158 29.54 9.82 41.37 5.80
1550 1621 9.767228 ATATGCATATACAATTTTGCACACATT 57.233 25.926 17.72 0.00 46.75 2.71
1777 2077 7.660617 AGCATGTATGACAAAGATATGAAGGAG 59.339 37.037 0.00 0.00 0.00 3.69
2022 2325 2.627933 TCAGGTACTTAGGGCAAAGGT 58.372 47.619 0.00 0.00 34.60 3.50
2070 2373 4.520874 TGTAGAGAGAGACCAAGTTGTGAG 59.479 45.833 1.45 0.00 0.00 3.51
2086 2389 2.252714 GTGAGAGAGAGGGACCAACTT 58.747 52.381 0.00 0.00 0.00 2.66
2561 4094 7.066043 ACAAATCACAGAAAATTTTGCACACAT 59.934 29.630 8.47 0.00 31.99 3.21
2562 4095 6.774354 ATCACAGAAAATTTTGCACACATC 57.226 33.333 8.47 0.00 0.00 3.06
2567 4104 9.356433 CACAGAAAATTTTGCACACATCATATA 57.644 29.630 8.47 0.00 0.00 0.86
2677 4376 4.941263 GGATAACTTCACAGTGCCATACAA 59.059 41.667 0.00 0.00 31.60 2.41
2721 4460 8.410141 CAAAGGTTTAACAAACATAGGTTCTGA 58.590 33.333 0.00 0.00 43.15 3.27
2722 4461 7.745620 AGGTTTAACAAACATAGGTTCTGAG 57.254 36.000 0.00 0.00 43.15 3.35
2723 4462 7.287810 AGGTTTAACAAACATAGGTTCTGAGT 58.712 34.615 0.00 0.00 43.15 3.41
2724 4463 7.228706 AGGTTTAACAAACATAGGTTCTGAGTG 59.771 37.037 0.00 0.00 43.15 3.51
2725 4464 6.554334 TTAACAAACATAGGTTCTGAGTGC 57.446 37.500 0.00 0.00 35.82 4.40
2726 4465 3.412386 ACAAACATAGGTTCTGAGTGCC 58.588 45.455 0.00 0.00 35.82 5.01
2727 4466 3.181445 ACAAACATAGGTTCTGAGTGCCA 60.181 43.478 0.00 0.00 35.82 4.92
2728 4467 4.012374 CAAACATAGGTTCTGAGTGCCAT 58.988 43.478 0.00 0.00 35.82 4.40
2805 4586 5.297527 TGATGTAATGCCTGATTTAGCACAG 59.702 40.000 0.00 0.00 42.84 3.66
2869 4650 2.119495 CCACTGGCATAGAAGTACCCT 58.881 52.381 0.00 0.00 0.00 4.34
2945 4726 4.442753 GGCTAGTAGAAGCTTCTGCAGAAT 60.443 45.833 35.97 22.71 41.60 2.40
2959 4740 2.821969 TGCAGAATTTCTTGGAGGCTTC 59.178 45.455 0.00 0.00 0.00 3.86
3123 5040 2.134630 CTTCCAGCAGCACCCCTTCT 62.135 60.000 0.00 0.00 0.00 2.85
3124 5041 0.840288 TTCCAGCAGCACCCCTTCTA 60.840 55.000 0.00 0.00 0.00 2.10
3125 5042 1.222936 CCAGCAGCACCCCTTCTAG 59.777 63.158 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 150 4.705991 TGCTCATGCATTTATTCAACCTGA 59.294 37.500 0.00 0.00 45.31 3.86
147 151 5.001237 TGCTCATGCATTTATTCAACCTG 57.999 39.130 0.00 0.00 45.31 4.00
161 165 5.238868 ACAGATCATCTATTTGTGCTCATGC 59.761 40.000 0.00 0.00 31.95 4.06
162 166 6.862711 ACAGATCATCTATTTGTGCTCATG 57.137 37.500 0.00 0.00 31.95 3.07
163 167 7.733969 ACTACAGATCATCTATTTGTGCTCAT 58.266 34.615 0.00 0.00 34.04 2.90
164 168 7.117285 ACTACAGATCATCTATTTGTGCTCA 57.883 36.000 0.00 0.00 34.04 4.26
165 169 8.973378 GTAACTACAGATCATCTATTTGTGCTC 58.027 37.037 0.00 0.00 34.04 4.26
166 170 8.700051 AGTAACTACAGATCATCTATTTGTGCT 58.300 33.333 0.00 0.00 34.04 4.40
167 171 8.879342 AGTAACTACAGATCATCTATTTGTGC 57.121 34.615 0.00 0.00 34.04 4.57
177 181 9.877178 CCACTCTTTTAAGTAACTACAGATCAT 57.123 33.333 0.00 0.00 0.00 2.45
178 182 8.867097 ACCACTCTTTTAAGTAACTACAGATCA 58.133 33.333 0.00 0.00 0.00 2.92
179 183 9.141400 CACCACTCTTTTAAGTAACTACAGATC 57.859 37.037 0.00 0.00 0.00 2.75
180 184 8.648693 ACACCACTCTTTTAAGTAACTACAGAT 58.351 33.333 0.00 0.00 0.00 2.90
181 185 7.924412 CACACCACTCTTTTAAGTAACTACAGA 59.076 37.037 0.00 0.00 0.00 3.41
182 186 7.170998 CCACACCACTCTTTTAAGTAACTACAG 59.829 40.741 0.00 0.00 0.00 2.74
183 187 6.987992 CCACACCACTCTTTTAAGTAACTACA 59.012 38.462 0.00 0.00 0.00 2.74
184 188 6.988580 ACCACACCACTCTTTTAAGTAACTAC 59.011 38.462 0.00 0.00 0.00 2.73
185 189 7.128234 ACCACACCACTCTTTTAAGTAACTA 57.872 36.000 0.00 0.00 0.00 2.24
186 190 5.997843 ACCACACCACTCTTTTAAGTAACT 58.002 37.500 0.00 0.00 0.00 2.24
187 191 7.974482 ATACCACACCACTCTTTTAAGTAAC 57.026 36.000 0.00 0.00 0.00 2.50
188 192 9.715121 CTTATACCACACCACTCTTTTAAGTAA 57.285 33.333 0.00 0.00 0.00 2.24
189 193 8.873144 ACTTATACCACACCACTCTTTTAAGTA 58.127 33.333 0.00 0.00 0.00 2.24
190 194 7.742767 ACTTATACCACACCACTCTTTTAAGT 58.257 34.615 0.00 0.00 0.00 2.24
191 195 9.367444 CTACTTATACCACACCACTCTTTTAAG 57.633 37.037 0.00 0.00 0.00 1.85
192 196 9.092338 TCTACTTATACCACACCACTCTTTTAA 57.908 33.333 0.00 0.00 0.00 1.52
193 197 8.654485 TCTACTTATACCACACCACTCTTTTA 57.346 34.615 0.00 0.00 0.00 1.52
194 198 7.549147 TCTACTTATACCACACCACTCTTTT 57.451 36.000 0.00 0.00 0.00 2.27
195 199 7.549147 TTCTACTTATACCACACCACTCTTT 57.451 36.000 0.00 0.00 0.00 2.52
196 200 7.234988 AGTTTCTACTTATACCACACCACTCTT 59.765 37.037 0.00 0.00 0.00 2.85
197 201 6.724905 AGTTTCTACTTATACCACACCACTCT 59.275 38.462 0.00 0.00 0.00 3.24
198 202 6.932947 AGTTTCTACTTATACCACACCACTC 58.067 40.000 0.00 0.00 0.00 3.51
199 203 6.724905 AGAGTTTCTACTTATACCACACCACT 59.275 38.462 0.00 0.00 33.84 4.00
200 204 6.812160 CAGAGTTTCTACTTATACCACACCAC 59.188 42.308 0.00 0.00 33.84 4.16
201 205 6.070995 CCAGAGTTTCTACTTATACCACACCA 60.071 42.308 0.00 0.00 33.84 4.17
202 206 6.338937 CCAGAGTTTCTACTTATACCACACC 58.661 44.000 0.00 0.00 33.84 4.16
203 207 5.811100 GCCAGAGTTTCTACTTATACCACAC 59.189 44.000 0.00 0.00 33.84 3.82
204 208 5.720041 AGCCAGAGTTTCTACTTATACCACA 59.280 40.000 0.00 0.00 33.84 4.17
205 209 6.043411 CAGCCAGAGTTTCTACTTATACCAC 58.957 44.000 0.00 0.00 33.84 4.16
206 210 5.128827 CCAGCCAGAGTTTCTACTTATACCA 59.871 44.000 0.00 0.00 33.84 3.25
207 211 5.128991 ACCAGCCAGAGTTTCTACTTATACC 59.871 44.000 0.00 0.00 33.84 2.73
208 212 6.043411 CACCAGCCAGAGTTTCTACTTATAC 58.957 44.000 0.00 0.00 33.84 1.47
209 213 5.128827 CCACCAGCCAGAGTTTCTACTTATA 59.871 44.000 0.00 0.00 33.84 0.98
210 214 4.080863 CCACCAGCCAGAGTTTCTACTTAT 60.081 45.833 0.00 0.00 33.84 1.73
211 215 3.260884 CCACCAGCCAGAGTTTCTACTTA 59.739 47.826 0.00 0.00 33.84 2.24
212 216 2.039084 CCACCAGCCAGAGTTTCTACTT 59.961 50.000 0.00 0.00 33.84 2.24
213 217 1.625818 CCACCAGCCAGAGTTTCTACT 59.374 52.381 0.00 0.00 37.31 2.57
214 218 1.946283 GCCACCAGCCAGAGTTTCTAC 60.946 57.143 0.00 0.00 34.35 2.59
215 219 0.324943 GCCACCAGCCAGAGTTTCTA 59.675 55.000 0.00 0.00 34.35 2.10
216 220 1.073897 GCCACCAGCCAGAGTTTCT 59.926 57.895 0.00 0.00 34.35 2.52
217 221 3.673599 GCCACCAGCCAGAGTTTC 58.326 61.111 0.00 0.00 34.35 2.78
226 230 1.678970 CTTGGTAAGGGCCACCAGC 60.679 63.158 14.71 5.22 46.44 4.85
227 231 1.000896 CCTTGGTAAGGGCCACCAG 60.001 63.158 14.71 9.71 46.44 4.00
228 232 3.176297 CCTTGGTAAGGGCCACCA 58.824 61.111 11.52 11.52 45.27 4.17
235 239 4.227527 ACCTTCTTATCACCCTTGGTAAGG 59.772 45.833 8.15 8.15 43.96 2.69
236 240 5.437191 ACCTTCTTATCACCCTTGGTAAG 57.563 43.478 0.00 0.00 44.83 2.34
237 241 5.104652 GCTACCTTCTTATCACCCTTGGTAA 60.105 44.000 0.00 0.00 32.11 2.85
238 242 4.407945 GCTACCTTCTTATCACCCTTGGTA 59.592 45.833 0.00 0.00 32.11 3.25
239 243 3.200165 GCTACCTTCTTATCACCCTTGGT 59.800 47.826 0.00 0.00 35.62 3.67
240 244 3.199946 TGCTACCTTCTTATCACCCTTGG 59.800 47.826 0.00 0.00 0.00 3.61
241 245 4.487714 TGCTACCTTCTTATCACCCTTG 57.512 45.455 0.00 0.00 0.00 3.61
242 246 4.783227 TCTTGCTACCTTCTTATCACCCTT 59.217 41.667 0.00 0.00 0.00 3.95
243 247 4.362677 TCTTGCTACCTTCTTATCACCCT 58.637 43.478 0.00 0.00 0.00 4.34
244 248 4.755266 TCTTGCTACCTTCTTATCACCC 57.245 45.455 0.00 0.00 0.00 4.61
245 249 5.008118 GCATTCTTGCTACCTTCTTATCACC 59.992 44.000 0.00 0.00 45.77 4.02
246 250 6.054035 GCATTCTTGCTACCTTCTTATCAC 57.946 41.667 0.00 0.00 45.77 3.06
269 273 0.396060 GGAGATGGGCTGCTCCTTAG 59.604 60.000 0.00 0.00 45.72 2.18
270 274 2.532854 GGAGATGGGCTGCTCCTTA 58.467 57.895 0.00 0.00 45.72 2.69
271 275 3.329093 GGAGATGGGCTGCTCCTT 58.671 61.111 0.00 0.00 45.72 3.36
273 277 2.509916 CAGGAGATGGGCTGCTCC 59.490 66.667 0.00 11.22 44.25 4.70
274 278 2.509916 CCAGGAGATGGGCTGCTC 59.490 66.667 0.00 0.00 44.25 4.26
282 286 0.617413 AGTTCACAGGCCAGGAGATG 59.383 55.000 5.01 0.00 0.00 2.90
283 287 2.114616 CTAGTTCACAGGCCAGGAGAT 58.885 52.381 5.01 0.00 0.00 2.75
284 288 1.561643 CTAGTTCACAGGCCAGGAGA 58.438 55.000 5.01 0.00 0.00 3.71
285 289 0.539051 CCTAGTTCACAGGCCAGGAG 59.461 60.000 5.01 0.00 0.00 3.69
286 290 0.116342 TCCTAGTTCACAGGCCAGGA 59.884 55.000 5.01 2.10 32.82 3.86
287 291 0.539051 CTCCTAGTTCACAGGCCAGG 59.461 60.000 5.01 0.00 32.82 4.45
288 292 0.107945 GCTCCTAGTTCACAGGCCAG 60.108 60.000 5.01 0.00 32.82 4.85
289 293 0.545309 AGCTCCTAGTTCACAGGCCA 60.545 55.000 5.01 0.00 32.82 5.36
290 294 0.176910 GAGCTCCTAGTTCACAGGCC 59.823 60.000 0.87 0.00 32.82 5.19
291 295 0.176910 GGAGCTCCTAGTTCACAGGC 59.823 60.000 26.25 0.00 32.82 4.85
292 296 0.457851 CGGAGCTCCTAGTTCACAGG 59.542 60.000 29.73 6.88 34.20 4.00
293 297 1.403679 CTCGGAGCTCCTAGTTCACAG 59.596 57.143 29.73 11.42 0.00 3.66
294 298 1.004394 TCTCGGAGCTCCTAGTTCACA 59.996 52.381 28.26 10.70 31.36 3.58
295 299 1.752683 TCTCGGAGCTCCTAGTTCAC 58.247 55.000 28.26 3.46 31.36 3.18
296 300 2.509166 TTCTCGGAGCTCCTAGTTCA 57.491 50.000 28.26 14.49 31.36 3.18
297 301 2.031508 CGATTCTCGGAGCTCCTAGTTC 60.032 54.545 28.26 23.72 36.00 3.01
298 302 1.950909 CGATTCTCGGAGCTCCTAGTT 59.049 52.381 28.26 19.20 36.00 2.24
299 303 1.600023 CGATTCTCGGAGCTCCTAGT 58.400 55.000 28.26 14.39 36.00 2.57
310 314 3.377485 TCTTCTACCTCAACCGATTCTCG 59.623 47.826 0.00 0.00 40.07 4.04
311 315 4.985538 TCTTCTACCTCAACCGATTCTC 57.014 45.455 0.00 0.00 0.00 2.87
312 316 4.380655 CGTTCTTCTACCTCAACCGATTCT 60.381 45.833 0.00 0.00 0.00 2.40
313 317 3.858238 CGTTCTTCTACCTCAACCGATTC 59.142 47.826 0.00 0.00 0.00 2.52
314 318 3.846360 CGTTCTTCTACCTCAACCGATT 58.154 45.455 0.00 0.00 0.00 3.34
315 319 2.416972 GCGTTCTTCTACCTCAACCGAT 60.417 50.000 0.00 0.00 0.00 4.18
316 320 1.068055 GCGTTCTTCTACCTCAACCGA 60.068 52.381 0.00 0.00 0.00 4.69
317 321 1.336517 TGCGTTCTTCTACCTCAACCG 60.337 52.381 0.00 0.00 0.00 4.44
318 322 2.450609 TGCGTTCTTCTACCTCAACC 57.549 50.000 0.00 0.00 0.00 3.77
319 323 3.125316 CCATTGCGTTCTTCTACCTCAAC 59.875 47.826 0.00 0.00 0.00 3.18
320 324 3.334691 CCATTGCGTTCTTCTACCTCAA 58.665 45.455 0.00 0.00 0.00 3.02
321 325 2.354704 CCCATTGCGTTCTTCTACCTCA 60.355 50.000 0.00 0.00 0.00 3.86
322 326 2.093658 TCCCATTGCGTTCTTCTACCTC 60.094 50.000 0.00 0.00 0.00 3.85
323 327 1.906574 TCCCATTGCGTTCTTCTACCT 59.093 47.619 0.00 0.00 0.00 3.08
324 328 2.396590 TCCCATTGCGTTCTTCTACC 57.603 50.000 0.00 0.00 0.00 3.18
325 329 3.487544 GCATTCCCATTGCGTTCTTCTAC 60.488 47.826 0.00 0.00 0.00 2.59
326 330 2.682856 GCATTCCCATTGCGTTCTTCTA 59.317 45.455 0.00 0.00 0.00 2.10
327 331 1.474077 GCATTCCCATTGCGTTCTTCT 59.526 47.619 0.00 0.00 0.00 2.85
328 332 1.469767 GGCATTCCCATTGCGTTCTTC 60.470 52.381 0.00 0.00 41.07 2.87
329 333 0.532115 GGCATTCCCATTGCGTTCTT 59.468 50.000 0.00 0.00 41.07 2.52
330 334 2.192605 GGCATTCCCATTGCGTTCT 58.807 52.632 0.00 0.00 41.07 3.01
331 335 4.812814 GGCATTCCCATTGCGTTC 57.187 55.556 0.00 0.00 41.07 3.95
346 350 4.840005 GACTGCTACGCCTGGGGC 62.840 72.222 11.10 0.00 46.75 5.80
347 351 3.376935 CTGACTGCTACGCCTGGGG 62.377 68.421 9.49 9.49 0.00 4.96
348 352 2.185350 CTGACTGCTACGCCTGGG 59.815 66.667 0.00 0.00 0.00 4.45
349 353 1.320344 TACCTGACTGCTACGCCTGG 61.320 60.000 0.00 0.00 0.00 4.45
350 354 0.747255 ATACCTGACTGCTACGCCTG 59.253 55.000 0.00 0.00 0.00 4.85
351 355 0.747255 CATACCTGACTGCTACGCCT 59.253 55.000 0.00 0.00 0.00 5.52
352 356 0.744874 TCATACCTGACTGCTACGCC 59.255 55.000 0.00 0.00 0.00 5.68
353 357 2.608261 GGATCATACCTGACTGCTACGC 60.608 54.545 0.00 0.00 33.22 4.42
354 358 2.623416 TGGATCATACCTGACTGCTACG 59.377 50.000 0.00 0.00 33.22 3.51
355 359 4.526262 AGATGGATCATACCTGACTGCTAC 59.474 45.833 0.00 0.00 33.22 3.58
356 360 4.745351 AGATGGATCATACCTGACTGCTA 58.255 43.478 0.00 0.00 33.22 3.49
357 361 3.577848 GAGATGGATCATACCTGACTGCT 59.422 47.826 0.00 0.00 33.22 4.24
358 362 3.577848 AGAGATGGATCATACCTGACTGC 59.422 47.826 0.00 0.00 33.22 4.40
359 363 5.564455 CGAAGAGATGGATCATACCTGACTG 60.564 48.000 0.00 0.00 33.22 3.51
360 364 4.522405 CGAAGAGATGGATCATACCTGACT 59.478 45.833 0.00 0.00 33.22 3.41
361 365 4.279671 ACGAAGAGATGGATCATACCTGAC 59.720 45.833 0.00 0.00 33.22 3.51
362 366 4.474394 ACGAAGAGATGGATCATACCTGA 58.526 43.478 0.00 0.00 35.41 3.86
363 367 4.321601 GGACGAAGAGATGGATCATACCTG 60.322 50.000 0.00 0.00 0.00 4.00
364 368 3.829601 GGACGAAGAGATGGATCATACCT 59.170 47.826 0.00 0.00 0.00 3.08
365 369 3.366476 CGGACGAAGAGATGGATCATACC 60.366 52.174 0.00 0.00 0.00 2.73
366 370 3.502595 TCGGACGAAGAGATGGATCATAC 59.497 47.826 0.00 0.00 0.00 2.39
367 371 3.502595 GTCGGACGAAGAGATGGATCATA 59.497 47.826 0.00 0.00 0.00 2.15
368 372 2.294791 GTCGGACGAAGAGATGGATCAT 59.705 50.000 0.00 0.00 0.00 2.45
369 373 1.676529 GTCGGACGAAGAGATGGATCA 59.323 52.381 0.00 0.00 0.00 2.92
370 374 1.676529 TGTCGGACGAAGAGATGGATC 59.323 52.381 3.34 0.00 0.00 3.36
371 375 1.763968 TGTCGGACGAAGAGATGGAT 58.236 50.000 3.34 0.00 0.00 3.41
372 376 1.541379 TTGTCGGACGAAGAGATGGA 58.459 50.000 3.34 0.00 0.00 3.41
373 377 2.363788 TTTGTCGGACGAAGAGATGG 57.636 50.000 6.72 0.00 0.00 3.51
374 378 6.036083 ACAATAATTTGTCGGACGAAGAGATG 59.964 38.462 15.54 13.38 42.43 2.90
375 379 6.036083 CACAATAATTTGTCGGACGAAGAGAT 59.964 38.462 15.54 6.65 44.24 2.75
376 380 5.347635 CACAATAATTTGTCGGACGAAGAGA 59.652 40.000 15.54 4.79 44.24 3.10
377 381 5.550981 CACAATAATTTGTCGGACGAAGAG 58.449 41.667 15.54 6.70 44.24 2.85
378 382 4.142988 GCACAATAATTTGTCGGACGAAGA 60.143 41.667 15.54 7.32 44.24 2.87
379 383 4.088648 GCACAATAATTTGTCGGACGAAG 58.911 43.478 15.54 5.14 44.24 3.79
380 384 3.498777 TGCACAATAATTTGTCGGACGAA 59.501 39.130 12.96 12.96 44.24 3.85
381 385 3.067833 TGCACAATAATTTGTCGGACGA 58.932 40.909 3.34 0.00 44.24 4.20
382 386 3.463533 TGCACAATAATTTGTCGGACG 57.536 42.857 3.34 0.00 44.24 4.79
383 387 4.104776 CCATGCACAATAATTTGTCGGAC 58.895 43.478 0.00 0.00 44.24 4.79
384 388 4.013050 TCCATGCACAATAATTTGTCGGA 58.987 39.130 0.00 0.00 44.24 4.55
385 389 4.368874 TCCATGCACAATAATTTGTCGG 57.631 40.909 0.00 0.00 44.24 4.79
386 390 6.728200 AGTATCCATGCACAATAATTTGTCG 58.272 36.000 0.00 0.00 44.24 4.35
387 391 7.436080 CCAAGTATCCATGCACAATAATTTGTC 59.564 37.037 0.00 0.00 44.24 3.18
389 393 6.201425 GCCAAGTATCCATGCACAATAATTTG 59.799 38.462 0.00 0.00 38.86 2.32
390 394 6.098695 AGCCAAGTATCCATGCACAATAATTT 59.901 34.615 0.00 0.00 0.00 1.82
391 395 5.599656 AGCCAAGTATCCATGCACAATAATT 59.400 36.000 0.00 0.00 0.00 1.40
392 396 5.142639 AGCCAAGTATCCATGCACAATAAT 58.857 37.500 0.00 0.00 0.00 1.28
393 397 4.535781 AGCCAAGTATCCATGCACAATAA 58.464 39.130 0.00 0.00 0.00 1.40
394 398 4.136796 GAGCCAAGTATCCATGCACAATA 58.863 43.478 0.00 0.00 0.00 1.90
395 399 2.954318 GAGCCAAGTATCCATGCACAAT 59.046 45.455 0.00 0.00 0.00 2.71
396 400 2.368439 GAGCCAAGTATCCATGCACAA 58.632 47.619 0.00 0.00 0.00 3.33
397 401 1.408683 GGAGCCAAGTATCCATGCACA 60.409 52.381 0.00 0.00 35.54 4.57
398 402 1.133976 AGGAGCCAAGTATCCATGCAC 60.134 52.381 0.00 0.00 38.12 4.57
399 403 1.134007 CAGGAGCCAAGTATCCATGCA 60.134 52.381 0.00 0.00 38.12 3.96
400 404 1.141657 TCAGGAGCCAAGTATCCATGC 59.858 52.381 0.00 0.00 38.12 4.06
401 405 2.437281 ACTCAGGAGCCAAGTATCCATG 59.563 50.000 0.00 0.00 38.12 3.66
402 406 2.437281 CACTCAGGAGCCAAGTATCCAT 59.563 50.000 0.00 0.00 38.12 3.41
403 407 1.833630 CACTCAGGAGCCAAGTATCCA 59.166 52.381 0.00 0.00 38.12 3.41
404 408 1.474143 GCACTCAGGAGCCAAGTATCC 60.474 57.143 0.00 0.00 35.71 2.59
405 409 1.208052 TGCACTCAGGAGCCAAGTATC 59.792 52.381 0.00 0.00 0.00 2.24
406 410 1.279496 TGCACTCAGGAGCCAAGTAT 58.721 50.000 0.00 0.00 0.00 2.12
407 411 1.055849 TTGCACTCAGGAGCCAAGTA 58.944 50.000 0.00 0.00 0.00 2.24
408 412 0.536006 GTTGCACTCAGGAGCCAAGT 60.536 55.000 0.00 0.00 0.00 3.16
409 413 0.535780 TGTTGCACTCAGGAGCCAAG 60.536 55.000 0.00 0.00 0.00 3.61
410 414 0.106769 TTGTTGCACTCAGGAGCCAA 60.107 50.000 0.00 0.00 0.00 4.52
411 415 0.819259 GTTGTTGCACTCAGGAGCCA 60.819 55.000 0.00 0.00 0.00 4.75
412 416 0.819259 TGTTGTTGCACTCAGGAGCC 60.819 55.000 0.00 0.00 0.00 4.70
413 417 0.590195 CTGTTGTTGCACTCAGGAGC 59.410 55.000 0.00 0.00 0.00 4.70
414 418 1.600957 CACTGTTGTTGCACTCAGGAG 59.399 52.381 10.06 0.00 32.92 3.69
415 419 1.209261 TCACTGTTGTTGCACTCAGGA 59.791 47.619 10.06 4.01 32.92 3.86
416 420 1.667236 TCACTGTTGTTGCACTCAGG 58.333 50.000 10.06 2.33 32.92 3.86
417 421 2.419673 TGTTCACTGTTGTTGCACTCAG 59.580 45.455 0.00 0.00 0.00 3.35
418 422 2.431454 TGTTCACTGTTGTTGCACTCA 58.569 42.857 0.00 0.00 0.00 3.41
419 423 3.485947 TTGTTCACTGTTGTTGCACTC 57.514 42.857 0.00 0.00 0.00 3.51
420 424 4.454728 AATTGTTCACTGTTGTTGCACT 57.545 36.364 0.00 0.00 0.00 4.40
421 425 6.639671 TTTAATTGTTCACTGTTGTTGCAC 57.360 33.333 0.00 0.00 0.00 4.57
422 426 7.840342 AATTTAATTGTTCACTGTTGTTGCA 57.160 28.000 0.00 0.00 0.00 4.08
423 427 8.487176 CCTAATTTAATTGTTCACTGTTGTTGC 58.513 33.333 0.00 0.00 0.00 4.17
424 428 9.743057 TCCTAATTTAATTGTTCACTGTTGTTG 57.257 29.630 0.00 0.00 0.00 3.33
425 429 9.744468 GTCCTAATTTAATTGTTCACTGTTGTT 57.256 29.630 0.00 0.00 0.00 2.83
426 430 9.131791 AGTCCTAATTTAATTGTTCACTGTTGT 57.868 29.630 0.00 0.00 0.00 3.32
427 431 9.965824 AAGTCCTAATTTAATTGTTCACTGTTG 57.034 29.630 0.00 0.00 0.00 3.33
442 446 9.634021 AAGAGTTCAGAGAAAAAGTCCTAATTT 57.366 29.630 0.00 0.00 0.00 1.82
443 447 9.278978 GAAGAGTTCAGAGAAAAAGTCCTAATT 57.721 33.333 0.00 0.00 0.00 1.40
444 448 8.655901 AGAAGAGTTCAGAGAAAAAGTCCTAAT 58.344 33.333 0.00 0.00 0.00 1.73
445 449 8.024145 AGAAGAGTTCAGAGAAAAAGTCCTAA 57.976 34.615 0.00 0.00 0.00 2.69
446 450 7.604657 AGAAGAGTTCAGAGAAAAAGTCCTA 57.395 36.000 0.00 0.00 0.00 2.94
447 451 6.493189 AGAAGAGTTCAGAGAAAAAGTCCT 57.507 37.500 0.00 0.00 0.00 3.85
448 452 7.497579 AGAAAGAAGAGTTCAGAGAAAAAGTCC 59.502 37.037 0.00 0.00 0.00 3.85
449 453 8.432110 AGAAAGAAGAGTTCAGAGAAAAAGTC 57.568 34.615 0.00 0.00 0.00 3.01
450 454 8.800370 AAGAAAGAAGAGTTCAGAGAAAAAGT 57.200 30.769 0.00 0.00 0.00 2.66
452 456 9.846248 CAAAAGAAAGAAGAGTTCAGAGAAAAA 57.154 29.630 0.00 0.00 0.00 1.94
453 457 9.231297 TCAAAAGAAAGAAGAGTTCAGAGAAAA 57.769 29.630 0.00 0.00 0.00 2.29
454 458 8.792830 TCAAAAGAAAGAAGAGTTCAGAGAAA 57.207 30.769 0.00 0.00 0.00 2.52
455 459 8.970859 ATCAAAAGAAAGAAGAGTTCAGAGAA 57.029 30.769 0.00 0.00 0.00 2.87
456 460 8.206867 TGATCAAAAGAAAGAAGAGTTCAGAGA 58.793 33.333 0.00 0.00 0.00 3.10
457 461 8.281893 GTGATCAAAAGAAAGAAGAGTTCAGAG 58.718 37.037 0.00 0.00 0.00 3.35
458 462 7.227512 GGTGATCAAAAGAAAGAAGAGTTCAGA 59.772 37.037 0.00 0.00 0.00 3.27
459 463 7.358830 GGTGATCAAAAGAAAGAAGAGTTCAG 58.641 38.462 0.00 0.00 0.00 3.02
460 464 6.263168 GGGTGATCAAAAGAAAGAAGAGTTCA 59.737 38.462 0.00 0.00 0.00 3.18
461 465 6.488344 AGGGTGATCAAAAGAAAGAAGAGTTC 59.512 38.462 0.00 0.00 0.00 3.01
462 466 6.264067 CAGGGTGATCAAAAGAAAGAAGAGTT 59.736 38.462 0.00 0.00 0.00 3.01
463 467 5.767168 CAGGGTGATCAAAAGAAAGAAGAGT 59.233 40.000 0.00 0.00 0.00 3.24
464 468 5.335504 GCAGGGTGATCAAAAGAAAGAAGAG 60.336 44.000 0.00 0.00 0.00 2.85
465 469 4.520492 GCAGGGTGATCAAAAGAAAGAAGA 59.480 41.667 0.00 0.00 0.00 2.87
466 470 4.279169 TGCAGGGTGATCAAAAGAAAGAAG 59.721 41.667 0.00 0.00 0.00 2.85
467 471 4.214310 TGCAGGGTGATCAAAAGAAAGAA 58.786 39.130 0.00 0.00 0.00 2.52
468 472 3.822735 CTGCAGGGTGATCAAAAGAAAGA 59.177 43.478 5.57 0.00 0.00 2.52
469 473 3.571401 ACTGCAGGGTGATCAAAAGAAAG 59.429 43.478 19.93 0.00 0.00 2.62
470 474 3.318839 CACTGCAGGGTGATCAAAAGAAA 59.681 43.478 19.93 0.00 39.34 2.52
471 475 2.886523 CACTGCAGGGTGATCAAAAGAA 59.113 45.455 19.93 0.00 39.34 2.52
472 476 2.507484 CACTGCAGGGTGATCAAAAGA 58.493 47.619 19.93 0.00 39.34 2.52
473 477 1.542915 CCACTGCAGGGTGATCAAAAG 59.457 52.381 19.93 0.00 39.34 2.27
474 478 1.144708 TCCACTGCAGGGTGATCAAAA 59.855 47.619 19.93 0.00 39.34 2.44
475 479 0.770499 TCCACTGCAGGGTGATCAAA 59.230 50.000 19.93 0.00 39.34 2.69
476 480 0.325933 CTCCACTGCAGGGTGATCAA 59.674 55.000 19.93 0.00 39.34 2.57
477 481 0.545071 TCTCCACTGCAGGGTGATCA 60.545 55.000 19.93 0.00 39.34 2.92
478 482 0.177604 CTCTCCACTGCAGGGTGATC 59.822 60.000 19.93 0.00 39.34 2.92
479 483 0.546267 ACTCTCCACTGCAGGGTGAT 60.546 55.000 19.93 9.56 39.34 3.06
480 484 0.114364 TACTCTCCACTGCAGGGTGA 59.886 55.000 19.93 19.20 39.34 4.02
481 485 0.534412 CTACTCTCCACTGCAGGGTG 59.466 60.000 19.93 16.22 37.00 4.61
482 486 1.261238 GCTACTCTCCACTGCAGGGT 61.261 60.000 19.93 8.95 0.00 4.34
483 487 1.260538 TGCTACTCTCCACTGCAGGG 61.261 60.000 19.93 15.23 0.00 4.45
484 488 0.175302 CTGCTACTCTCCACTGCAGG 59.825 60.000 19.93 6.95 44.95 4.85
485 489 3.737127 CTGCTACTCTCCACTGCAG 57.263 57.895 13.48 13.48 43.71 4.41
486 490 0.251787 TCCTGCTACTCTCCACTGCA 60.252 55.000 0.00 0.00 0.00 4.41
487 491 0.459489 CTCCTGCTACTCTCCACTGC 59.541 60.000 0.00 0.00 0.00 4.40
488 492 2.023673 CTCTCCTGCTACTCTCCACTG 58.976 57.143 0.00 0.00 0.00 3.66
489 493 1.684869 GCTCTCCTGCTACTCTCCACT 60.685 57.143 0.00 0.00 0.00 4.00
490 494 0.744281 GCTCTCCTGCTACTCTCCAC 59.256 60.000 0.00 0.00 0.00 4.02
491 495 0.628522 AGCTCTCCTGCTACTCTCCA 59.371 55.000 0.00 0.00 42.10 3.86
492 496 2.105821 TCTAGCTCTCCTGCTACTCTCC 59.894 54.545 0.00 0.00 43.74 3.71
493 497 3.071023 TCTCTAGCTCTCCTGCTACTCTC 59.929 52.174 0.00 0.00 43.74 3.20
494 498 3.045634 TCTCTAGCTCTCCTGCTACTCT 58.954 50.000 0.00 0.00 43.74 3.24
495 499 3.485463 TCTCTAGCTCTCCTGCTACTC 57.515 52.381 0.00 0.00 43.74 2.59
496 500 3.138283 ACATCTCTAGCTCTCCTGCTACT 59.862 47.826 0.00 0.00 43.74 2.57
497 501 3.486383 ACATCTCTAGCTCTCCTGCTAC 58.514 50.000 0.00 0.00 43.74 3.58
498 502 3.137360 TGACATCTCTAGCTCTCCTGCTA 59.863 47.826 0.00 0.00 43.74 3.49
499 503 2.091939 TGACATCTCTAGCTCTCCTGCT 60.092 50.000 0.00 0.00 46.11 4.24
500 504 2.034558 GTGACATCTCTAGCTCTCCTGC 59.965 54.545 0.00 0.00 0.00 4.85
501 505 2.622942 GGTGACATCTCTAGCTCTCCTG 59.377 54.545 0.00 0.00 0.00 3.86
502 506 2.243478 TGGTGACATCTCTAGCTCTCCT 59.757 50.000 0.00 0.00 33.40 3.69
503 507 2.660572 TGGTGACATCTCTAGCTCTCC 58.339 52.381 0.00 0.00 33.40 3.71
520 524 1.333619 GAGTGCACAAACACGAATGGT 59.666 47.619 21.04 0.00 45.45 3.55
521 525 1.603802 AGAGTGCACAAACACGAATGG 59.396 47.619 21.04 0.00 45.45 3.16
522 526 2.642995 CAGAGTGCACAAACACGAATG 58.357 47.619 21.04 0.10 45.45 2.67
523 527 1.002468 GCAGAGTGCACAAACACGAAT 60.002 47.619 21.04 0.00 45.45 3.34
524 528 0.376852 GCAGAGTGCACAAACACGAA 59.623 50.000 21.04 0.00 45.45 3.85
525 529 2.013807 GCAGAGTGCACAAACACGA 58.986 52.632 21.04 0.00 45.45 4.35
526 530 4.595629 GCAGAGTGCACAAACACG 57.404 55.556 21.04 6.69 45.45 4.49
535 539 0.594602 TTGACATTGCTGCAGAGTGC 59.405 50.000 20.43 2.64 45.29 4.40
536 540 3.487042 GCTATTGACATTGCTGCAGAGTG 60.487 47.826 20.43 14.41 0.00 3.51
537 541 2.681848 GCTATTGACATTGCTGCAGAGT 59.318 45.455 20.43 9.64 0.00 3.24
538 542 2.286242 CGCTATTGACATTGCTGCAGAG 60.286 50.000 20.43 6.11 0.00 3.35
539 543 1.667212 CGCTATTGACATTGCTGCAGA 59.333 47.619 20.43 0.00 0.00 4.26
540 544 1.268386 CCGCTATTGACATTGCTGCAG 60.268 52.381 10.11 10.11 0.00 4.41
541 545 0.734309 CCGCTATTGACATTGCTGCA 59.266 50.000 0.00 0.00 0.00 4.41
542 546 1.016627 TCCGCTATTGACATTGCTGC 58.983 50.000 0.00 0.00 0.00 5.25
543 547 2.283298 AGTCCGCTATTGACATTGCTG 58.717 47.619 0.00 0.00 35.15 4.41
544 548 2.698855 AGTCCGCTATTGACATTGCT 57.301 45.000 0.00 0.00 35.15 3.91
545 549 2.939103 AGAAGTCCGCTATTGACATTGC 59.061 45.455 0.00 0.00 35.15 3.56
546 550 3.310774 CCAGAAGTCCGCTATTGACATTG 59.689 47.826 0.00 0.00 35.15 2.82
547 551 3.055094 ACCAGAAGTCCGCTATTGACATT 60.055 43.478 0.00 0.00 35.15 2.71
548 552 2.501723 ACCAGAAGTCCGCTATTGACAT 59.498 45.455 0.00 0.00 35.15 3.06
549 553 1.899814 ACCAGAAGTCCGCTATTGACA 59.100 47.619 0.00 0.00 35.15 3.58
550 554 2.674796 ACCAGAAGTCCGCTATTGAC 57.325 50.000 0.00 0.00 0.00 3.18
551 555 3.118884 GGTTACCAGAAGTCCGCTATTGA 60.119 47.826 0.00 0.00 0.00 2.57
552 556 3.195661 GGTTACCAGAAGTCCGCTATTG 58.804 50.000 0.00 0.00 0.00 1.90
553 557 2.159142 CGGTTACCAGAAGTCCGCTATT 60.159 50.000 1.13 0.00 35.01 1.73
554 558 1.407979 CGGTTACCAGAAGTCCGCTAT 59.592 52.381 1.13 0.00 35.01 2.97
555 559 0.813184 CGGTTACCAGAAGTCCGCTA 59.187 55.000 1.13 0.00 35.01 4.26
556 560 0.896940 TCGGTTACCAGAAGTCCGCT 60.897 55.000 1.13 0.00 40.81 5.52
557 561 0.735287 GTCGGTTACCAGAAGTCCGC 60.735 60.000 1.13 0.00 40.81 5.54
558 562 0.599558 TGTCGGTTACCAGAAGTCCG 59.400 55.000 1.13 0.00 42.12 4.79
559 563 2.224113 TGTTGTCGGTTACCAGAAGTCC 60.224 50.000 1.13 0.00 0.00 3.85
560 564 3.057734 CTGTTGTCGGTTACCAGAAGTC 58.942 50.000 1.13 0.00 0.00 3.01
561 565 2.433239 ACTGTTGTCGGTTACCAGAAGT 59.567 45.455 1.13 0.00 0.00 3.01
562 566 3.107642 ACTGTTGTCGGTTACCAGAAG 57.892 47.619 1.13 0.00 0.00 2.85
563 567 4.370917 GTTACTGTTGTCGGTTACCAGAA 58.629 43.478 1.13 0.00 34.68 3.02
564 568 3.550639 CGTTACTGTTGTCGGTTACCAGA 60.551 47.826 1.13 0.00 34.68 3.86
565 569 2.727798 CGTTACTGTTGTCGGTTACCAG 59.272 50.000 1.13 0.00 34.68 4.00
566 570 2.360483 TCGTTACTGTTGTCGGTTACCA 59.640 45.455 1.13 0.00 34.68 3.25
567 571 2.982470 CTCGTTACTGTTGTCGGTTACC 59.018 50.000 0.00 0.00 34.68 2.85
568 572 2.406357 GCTCGTTACTGTTGTCGGTTAC 59.594 50.000 0.00 0.00 34.68 2.50
569 573 2.294233 AGCTCGTTACTGTTGTCGGTTA 59.706 45.455 0.00 0.00 34.68 2.85
570 574 1.068127 AGCTCGTTACTGTTGTCGGTT 59.932 47.619 0.00 0.00 34.68 4.44
571 575 0.672342 AGCTCGTTACTGTTGTCGGT 59.328 50.000 0.00 0.00 37.00 4.69
572 576 1.337821 GAGCTCGTTACTGTTGTCGG 58.662 55.000 0.00 0.00 0.00 4.79
573 577 0.975544 CGAGCTCGTTACTGTTGTCG 59.024 55.000 27.79 0.00 34.11 4.35
574 578 0.708918 GCGAGCTCGTTACTGTTGTC 59.291 55.000 34.46 12.23 42.22 3.18
575 579 0.666577 GGCGAGCTCGTTACTGTTGT 60.667 55.000 34.46 0.00 42.22 3.32
576 580 1.352156 GGGCGAGCTCGTTACTGTTG 61.352 60.000 34.46 6.54 42.22 3.33
577 581 1.080025 GGGCGAGCTCGTTACTGTT 60.080 57.895 34.46 0.00 42.22 3.16
578 582 2.572284 GGGCGAGCTCGTTACTGT 59.428 61.111 34.46 0.00 42.22 3.55
579 583 2.202756 GGGGCGAGCTCGTTACTG 60.203 66.667 34.46 8.82 42.22 2.74
580 584 2.362632 AGGGGCGAGCTCGTTACT 60.363 61.111 34.46 25.57 42.22 2.24
581 585 2.202756 CAGGGGCGAGCTCGTTAC 60.203 66.667 34.46 24.36 42.22 2.50
582 586 2.842188 TACCAGGGGCGAGCTCGTTA 62.842 60.000 34.46 13.27 42.22 3.18
584 588 4.753662 TACCAGGGGCGAGCTCGT 62.754 66.667 34.46 17.21 42.22 4.18
585 589 3.432051 CTTACCAGGGGCGAGCTCG 62.432 68.421 31.37 31.37 43.27 5.03
586 590 2.501610 CTTACCAGGGGCGAGCTC 59.498 66.667 2.73 2.73 0.00 4.09
587 591 3.787001 GCTTACCAGGGGCGAGCT 61.787 66.667 0.00 0.00 33.18 4.09
588 592 3.741830 GAGCTTACCAGGGGCGAGC 62.742 68.421 0.00 3.13 35.19 5.03
589 593 2.501610 GAGCTTACCAGGGGCGAG 59.498 66.667 0.00 0.00 0.00 5.03
590 594 3.458163 CGAGCTTACCAGGGGCGA 61.458 66.667 0.00 0.00 0.00 5.54
591 595 4.530857 CCGAGCTTACCAGGGGCG 62.531 72.222 0.00 0.00 0.00 6.13
592 596 3.400054 ACCGAGCTTACCAGGGGC 61.400 66.667 0.00 0.00 0.00 5.80
593 597 2.584608 CACCGAGCTTACCAGGGG 59.415 66.667 0.00 0.00 0.00 4.79
594 598 1.987855 TCCACCGAGCTTACCAGGG 60.988 63.158 0.00 0.00 0.00 4.45
595 599 1.218316 GTCCACCGAGCTTACCAGG 59.782 63.158 0.00 0.00 0.00 4.45
596 600 0.608640 AAGTCCACCGAGCTTACCAG 59.391 55.000 0.00 0.00 0.00 4.00
597 601 1.053424 AAAGTCCACCGAGCTTACCA 58.947 50.000 0.00 0.00 0.00 3.25
598 602 1.439679 CAAAGTCCACCGAGCTTACC 58.560 55.000 0.00 0.00 0.00 2.85
599 603 0.796927 GCAAAGTCCACCGAGCTTAC 59.203 55.000 0.00 0.00 0.00 2.34
600 604 0.394938 TGCAAAGTCCACCGAGCTTA 59.605 50.000 0.00 0.00 0.00 3.09
601 605 1.148273 TGCAAAGTCCACCGAGCTT 59.852 52.632 0.00 0.00 0.00 3.74
602 606 1.598130 GTGCAAAGTCCACCGAGCT 60.598 57.895 0.00 0.00 0.00 4.09
603 607 2.617274 GGTGCAAAGTCCACCGAGC 61.617 63.158 0.00 0.00 42.86 5.03
604 608 3.655481 GGTGCAAAGTCCACCGAG 58.345 61.111 0.00 0.00 42.86 4.63
608 612 2.639286 CTGCGGTGCAAAGTCCAC 59.361 61.111 0.00 0.00 38.41 4.02
609 613 3.286751 GCTGCGGTGCAAAGTCCA 61.287 61.111 0.00 0.00 38.41 4.02
610 614 4.389576 CGCTGCGGTGCAAAGTCC 62.390 66.667 15.40 0.00 38.41 3.85
623 627 2.960957 CTACTCCGACATGGGCGCTG 62.961 65.000 7.64 0.00 38.76 5.18
624 628 2.758327 TACTCCGACATGGGCGCT 60.758 61.111 7.64 0.00 38.76 5.92
625 629 2.279517 CTACTCCGACATGGGCGC 60.280 66.667 0.00 0.00 38.76 6.53
626 630 1.226974 CACTACTCCGACATGGGCG 60.227 63.158 0.00 0.00 38.76 6.13
627 631 0.103208 CTCACTACTCCGACATGGGC 59.897 60.000 0.00 0.00 38.76 5.36
628 632 1.475403 ACTCACTACTCCGACATGGG 58.525 55.000 0.00 0.00 38.76 4.00
629 633 4.920640 ATAACTCACTACTCCGACATGG 57.079 45.455 0.00 0.00 40.09 3.66
630 634 6.696148 GGTAAATAACTCACTACTCCGACATG 59.304 42.308 0.00 0.00 0.00 3.21
631 635 6.183360 GGGTAAATAACTCACTACTCCGACAT 60.183 42.308 0.00 0.00 0.00 3.06
632 636 5.126061 GGGTAAATAACTCACTACTCCGACA 59.874 44.000 0.00 0.00 0.00 4.35
633 637 5.126061 TGGGTAAATAACTCACTACTCCGAC 59.874 44.000 0.00 0.00 31.95 4.79
634 638 5.263599 TGGGTAAATAACTCACTACTCCGA 58.736 41.667 0.00 0.00 31.95 4.55
635 639 5.587388 TGGGTAAATAACTCACTACTCCG 57.413 43.478 0.00 0.00 31.95 4.63
636 640 7.120285 GGTTTTGGGTAAATAACTCACTACTCC 59.880 40.741 0.00 0.00 38.70 3.85
637 641 7.662669 TGGTTTTGGGTAAATAACTCACTACTC 59.337 37.037 0.00 0.00 38.70 2.59
638 642 7.446319 GTGGTTTTGGGTAAATAACTCACTACT 59.554 37.037 0.00 0.00 38.70 2.57
639 643 7.308770 GGTGGTTTTGGGTAAATAACTCACTAC 60.309 40.741 0.00 0.00 38.70 2.73
640 644 6.716173 GGTGGTTTTGGGTAAATAACTCACTA 59.284 38.462 0.00 0.00 38.70 2.74
641 645 5.537295 GGTGGTTTTGGGTAAATAACTCACT 59.463 40.000 0.00 0.00 38.70 3.41
642 646 5.302313 TGGTGGTTTTGGGTAAATAACTCAC 59.698 40.000 0.00 0.00 38.70 3.51
681 685 6.931281 CCTGAAATGTGATACCGATCTGTTAT 59.069 38.462 0.00 0.00 32.79 1.89
703 707 1.476085 TGGTTTTGTGTGAACTGCCTG 59.524 47.619 0.00 0.00 0.00 4.85
776 780 0.787787 TGTCGGATTCGCTGTTTTCG 59.212 50.000 0.00 0.00 36.13 3.46
1145 1158 1.804151 GCACAAATGAGCGACCTTGTA 59.196 47.619 0.00 0.00 31.00 2.41
1148 1161 1.317613 TTGCACAAATGAGCGACCTT 58.682 45.000 0.00 0.00 34.29 3.50
1358 1371 9.857957 AACTAAGTTAATCTACTTACAGTGAGC 57.142 33.333 0.00 0.00 39.08 4.26
1377 1391 7.778382 AGTGAATGGACCAAAAACTAACTAAGT 59.222 33.333 0.00 0.00 41.49 2.24
1434 1448 6.265196 TGAAGCAACAACTATCCAGAAACAAT 59.735 34.615 0.00 0.00 0.00 2.71
1671 1971 7.476540 TCCAGATAGTTGCACTTTAGTTCTA 57.523 36.000 0.00 0.00 0.00 2.10
1697 1997 0.105039 GGCCACTCTTGGTCTATCCG 59.895 60.000 0.00 0.00 45.07 4.18
1715 2015 1.661341 GAGAACTGCATAGCCACTGG 58.339 55.000 0.00 0.00 0.00 4.00
1777 2077 3.854784 GCTCAACATTTTCTGTGTGCCTC 60.855 47.826 0.00 0.00 38.39 4.70
2022 2325 2.313342 AGCTGGTCCCTCTCTTTCTCTA 59.687 50.000 0.00 0.00 0.00 2.43
2070 2373 4.618920 TGTTTAAGTTGGTCCCTCTCTC 57.381 45.455 0.00 0.00 0.00 3.20
2561 4094 5.124645 TGCTGTGATGTGTGCAATATATGA 58.875 37.500 0.00 0.00 32.12 2.15
2562 4095 5.427036 TGCTGTGATGTGTGCAATATATG 57.573 39.130 0.00 0.00 32.12 1.78
2567 4104 3.671008 ATTTGCTGTGATGTGTGCAAT 57.329 38.095 0.00 0.00 43.53 3.56
2677 4376 5.957774 ACCTTTGTATGGCATTATGAACCTT 59.042 36.000 4.78 0.00 0.00 3.50
2724 4463 2.633860 GGCACTATGGCACTATGGC 58.366 57.895 0.00 0.00 43.14 4.40
2869 4650 3.776969 AGTACATGAGCAAGAGGATGGAA 59.223 43.478 0.00 0.00 0.00 3.53
2945 4726 2.958355 CAAGGTTGAAGCCTCCAAGAAA 59.042 45.455 0.00 0.00 38.03 2.52
2959 4740 1.818642 CTGGAAGAGGAGCAAGGTTG 58.181 55.000 0.00 0.00 34.07 3.77
3073 4930 2.667418 GCTCCTGCTGCTGGAAGA 59.333 61.111 25.42 7.38 33.35 2.87
3123 5040 2.612972 GGTGCAAAGACTACTGCTGCTA 60.613 50.000 0.00 0.00 39.38 3.49
3124 5041 1.517242 GTGCAAAGACTACTGCTGCT 58.483 50.000 0.00 0.00 39.38 4.24
3125 5042 0.519077 GGTGCAAAGACTACTGCTGC 59.481 55.000 10.02 0.00 39.38 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.