Multiple sequence alignment - TraesCS5B01G348900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G348900 chr5B 100.000 2312 0 0 1 2312 530333555 530335866 0.000000e+00 4270.0
1 TraesCS5B01G348900 chr5B 93.261 742 44 5 574 1314 530609045 530609781 0.000000e+00 1088.0
2 TraesCS5B01G348900 chr5B 87.668 819 72 17 516 1314 530974579 530973770 0.000000e+00 926.0
3 TraesCS5B01G348900 chr5B 86.827 706 80 11 615 1314 530613202 530613900 0.000000e+00 776.0
4 TraesCS5B01G348900 chr5D 87.813 1559 109 42 516 2039 436349069 436350581 0.000000e+00 1751.0
5 TraesCS5B01G348900 chr5D 86.765 816 80 16 516 1314 436824581 436823777 0.000000e+00 883.0
6 TraesCS5B01G348900 chr5D 88.198 627 62 10 693 1314 436578191 436578810 0.000000e+00 737.0
7 TraesCS5B01G348900 chr5D 88.889 549 26 17 1 519 436348492 436349035 0.000000e+00 643.0
8 TraesCS5B01G348900 chr5D 89.963 269 27 0 2044 2312 356671649 356671381 4.730000e-92 348.0
9 TraesCS5B01G348900 chr5A 86.786 1400 116 39 516 1873 550801589 550802961 0.000000e+00 1496.0
10 TraesCS5B01G348900 chr5A 87.763 809 78 14 516 1314 552078931 552078134 0.000000e+00 926.0
11 TraesCS5B01G348900 chr5A 86.509 719 66 20 615 1314 551041101 551041807 0.000000e+00 761.0
12 TraesCS5B01G348900 chr5A 94.215 121 4 2 1899 2018 550804089 550803971 5.070000e-42 182.0
13 TraesCS5B01G348900 chr1B 97.026 269 8 0 2044 2312 343992219 343991951 9.740000e-124 453.0
14 TraesCS5B01G348900 chr3A 92.565 269 20 0 2044 2312 418432702 418432970 1.000000e-103 387.0
15 TraesCS5B01G348900 chr3A 86.245 269 36 1 2044 2312 417533508 417533775 8.080000e-75 291.0
16 TraesCS5B01G348900 chr2B 89.219 269 29 0 2044 2312 298163298 298163030 1.020000e-88 337.0
17 TraesCS5B01G348900 chr2A 81.897 116 21 0 2061 2176 71364384 71364499 5.260000e-17 99.0
18 TraesCS5B01G348900 chr1D 80.172 116 23 0 2064 2179 233314851 233314736 1.140000e-13 87.9
19 TraesCS5B01G348900 chr3B 85.000 80 9 3 1925 2002 709454052 709454130 6.850000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G348900 chr5B 530333555 530335866 2311 False 4270 4270 100.000 1 2312 1 chr5B.!!$F1 2311
1 TraesCS5B01G348900 chr5B 530609045 530613900 4855 False 932 1088 90.044 574 1314 2 chr5B.!!$F2 740
2 TraesCS5B01G348900 chr5B 530973770 530974579 809 True 926 926 87.668 516 1314 1 chr5B.!!$R1 798
3 TraesCS5B01G348900 chr5D 436348492 436350581 2089 False 1197 1751 88.351 1 2039 2 chr5D.!!$F2 2038
4 TraesCS5B01G348900 chr5D 436823777 436824581 804 True 883 883 86.765 516 1314 1 chr5D.!!$R2 798
5 TraesCS5B01G348900 chr5D 436578191 436578810 619 False 737 737 88.198 693 1314 1 chr5D.!!$F1 621
6 TraesCS5B01G348900 chr5A 550801589 550802961 1372 False 1496 1496 86.786 516 1873 1 chr5A.!!$F1 1357
7 TraesCS5B01G348900 chr5A 552078134 552078931 797 True 926 926 87.763 516 1314 1 chr5A.!!$R2 798
8 TraesCS5B01G348900 chr5A 551041101 551041807 706 False 761 761 86.509 615 1314 1 chr5A.!!$F2 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.322098 TGCCTTCCGTAACCACATGG 60.322 55.0 0.0 0.0 42.17 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1586 5837 0.332972 AACCTTCAGCCATTCCCCTC 59.667 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.238439 AATGTCTCAACACTTGCCCG 58.762 50.000 0.00 0.00 38.48 6.13
60 61 0.322098 TGCCTTCCGTAACCACATGG 60.322 55.000 0.00 0.00 42.17 3.66
96 97 4.705991 TCAATGGCTTCAAGATGCATACAA 59.294 37.500 0.00 0.00 33.64 2.41
97 98 4.913335 ATGGCTTCAAGATGCATACAAG 57.087 40.909 0.00 0.58 33.64 3.16
99 100 3.691118 TGGCTTCAAGATGCATACAAGAC 59.309 43.478 0.00 2.19 33.64 3.01
138 139 5.996669 GTAATCGGTACCATTAAAGGTGG 57.003 43.478 13.54 2.24 43.14 4.61
166 167 1.542547 GGCGGAGACCTTGAAGTTTCA 60.543 52.381 0.00 0.00 34.92 2.69
168 169 2.160417 GCGGAGACCTTGAAGTTTCATG 59.840 50.000 0.00 0.00 37.00 3.07
180 211 8.660373 CCTTGAAGTTTCATGTAGTTGATAGAC 58.340 37.037 0.00 0.00 37.00 2.59
190 221 7.819415 TCATGTAGTTGATAGACAAAACTCCAG 59.181 37.037 0.00 0.00 40.36 3.86
282 313 2.352371 CCAGAGGGGGTGAATGGATAT 58.648 52.381 0.00 0.00 32.55 1.63
308 339 8.966155 TTTTAAAAATGTCTATTTCTCCCCCT 57.034 30.769 0.00 0.00 35.50 4.79
447 479 6.114767 ACAGTTTGCATTCTTGAAACCAAAT 58.885 32.000 11.81 3.74 31.21 2.32
590 660 2.882137 CCTGAGTTTACGCCTTCCAAAA 59.118 45.455 0.00 0.00 0.00 2.44
626 711 1.407299 CCAGCGGTCAGAAATCCATCA 60.407 52.381 0.00 0.00 0.00 3.07
629 714 2.749621 AGCGGTCAGAAATCCATCAAAC 59.250 45.455 0.00 0.00 0.00 2.93
642 727 0.881118 ATCAAACATTTCGCGGCAGT 59.119 45.000 6.13 0.00 0.00 4.40
669 760 2.988688 GCCCGCGCAGGAAAAATCA 61.989 57.895 15.51 0.00 45.00 2.57
914 1013 2.877335 GGCTATAAATCTACCTCGCCG 58.123 52.381 0.00 0.00 0.00 6.46
915 1014 2.230750 GGCTATAAATCTACCTCGCCGT 59.769 50.000 0.00 0.00 0.00 5.68
1104 5341 2.114670 CATCACCAAGCCGGCGATT 61.115 57.895 23.20 8.19 34.10 3.34
1107 5344 4.077184 ACCAAGCCGGCGATTCGA 62.077 61.111 23.20 0.00 39.03 3.71
1116 5353 2.506217 GCGATTCGACGTCTGGCA 60.506 61.111 14.70 0.00 35.59 4.92
1248 5485 2.356313 CGCCGCAAGACTGTCACT 60.356 61.111 10.88 0.00 43.02 3.41
1341 5578 2.185350 CGAATCCAGCTCGCACCT 59.815 61.111 0.00 0.00 0.00 4.00
1342 5579 2.169789 CGAATCCAGCTCGCACCTG 61.170 63.158 0.00 0.00 0.00 4.00
1343 5580 2.437359 AATCCAGCTCGCACCTGC 60.437 61.111 0.00 0.00 37.78 4.85
1353 5590 1.339291 CTCGCACCTGCTGATCAGATA 59.661 52.381 27.04 12.88 45.72 1.98
1430 5667 1.277842 TGATGTATGGTGCCTGTTCGT 59.722 47.619 0.00 0.00 0.00 3.85
1472 5710 6.240145 TGTTATTTACCCTTAACTCGCCTTT 58.760 36.000 0.00 0.00 31.16 3.11
1504 5750 3.614150 GCTGATGTGTGTTCTTCCGTCTA 60.614 47.826 0.00 0.00 0.00 2.59
1512 5758 4.994852 TGTGTTCTTCCGTCTATTTCCAAG 59.005 41.667 0.00 0.00 0.00 3.61
1522 5772 5.106673 CCGTCTATTTCCAAGTTTTCTGTCC 60.107 44.000 0.00 0.00 0.00 4.02
1550 5801 1.647545 CGCCAAATCATCCGTGTGCT 61.648 55.000 0.00 0.00 0.00 4.40
1569 5820 3.130516 TGCTCGTCAGTTTAGGGTATCTG 59.869 47.826 0.00 0.00 0.00 2.90
1586 5837 3.443099 TCTGTGCATTCAGGACGATAG 57.557 47.619 4.64 0.00 42.22 2.08
1587 5838 3.023832 TCTGTGCATTCAGGACGATAGA 58.976 45.455 4.64 0.00 42.22 1.98
1589 5840 2.101415 TGTGCATTCAGGACGATAGAGG 59.899 50.000 0.00 0.00 42.22 3.69
1590 5841 1.688735 TGCATTCAGGACGATAGAGGG 59.311 52.381 0.00 0.00 41.38 4.30
1591 5842 1.001406 GCATTCAGGACGATAGAGGGG 59.999 57.143 0.00 0.00 41.38 4.79
1592 5843 2.598565 CATTCAGGACGATAGAGGGGA 58.401 52.381 0.00 0.00 41.38 4.81
1593 5844 2.840640 TTCAGGACGATAGAGGGGAA 57.159 50.000 0.00 0.00 41.38 3.97
1594 5845 3.330126 TTCAGGACGATAGAGGGGAAT 57.670 47.619 0.00 0.00 41.38 3.01
1595 5846 2.598565 TCAGGACGATAGAGGGGAATG 58.401 52.381 0.00 0.00 41.38 2.67
1596 5847 1.620819 CAGGACGATAGAGGGGAATGG 59.379 57.143 0.00 0.00 41.38 3.16
1656 5925 2.162809 TCATCGACCGAAGAATTGACGA 59.837 45.455 0.00 0.00 0.00 4.20
1657 5926 2.257974 TCGACCGAAGAATTGACGAG 57.742 50.000 0.00 0.00 0.00 4.18
1670 5939 5.705441 AGAATTGACGAGGCTATTTGTTTGA 59.295 36.000 0.00 0.00 0.00 2.69
1672 5941 5.957842 TTGACGAGGCTATTTGTTTGATT 57.042 34.783 0.00 0.00 0.00 2.57
1684 5953 7.008992 GCTATTTGTTTGATTGAGAACTGCATC 59.991 37.037 0.00 0.00 0.00 3.91
1687 5960 4.275689 TGTTTGATTGAGAACTGCATCGTT 59.724 37.500 0.00 0.00 0.00 3.85
1702 5975 4.986622 GCATCGTTGCCTCTTCTATTTTT 58.013 39.130 7.24 0.00 43.38 1.94
1704 5977 5.163713 GCATCGTTGCCTCTTCTATTTTTCT 60.164 40.000 7.24 0.00 43.38 2.52
1712 5985 7.234355 TGCCTCTTCTATTTTTCTTTCCTCTT 58.766 34.615 0.00 0.00 0.00 2.85
1714 5987 8.026026 GCCTCTTCTATTTTTCTTTCCTCTTTG 58.974 37.037 0.00 0.00 0.00 2.77
1772 6045 1.917273 ACATGGACGACCGAATTACG 58.083 50.000 0.00 0.00 39.42 3.18
1773 6046 1.203052 ACATGGACGACCGAATTACGT 59.797 47.619 0.00 0.00 42.84 3.57
1774 6047 2.423185 ACATGGACGACCGAATTACGTA 59.577 45.455 0.00 0.00 40.29 3.57
1775 6048 2.542766 TGGACGACCGAATTACGTAC 57.457 50.000 0.00 0.00 40.29 3.67
1776 6049 2.083774 TGGACGACCGAATTACGTACT 58.916 47.619 0.00 0.00 40.84 2.73
1777 6050 2.095853 TGGACGACCGAATTACGTACTC 59.904 50.000 0.00 0.00 40.84 2.59
1778 6051 2.352960 GGACGACCGAATTACGTACTCT 59.647 50.000 0.00 0.00 40.29 3.24
1779 6052 3.181506 GGACGACCGAATTACGTACTCTT 60.182 47.826 0.00 0.00 40.29 2.85
1780 6053 4.008539 ACGACCGAATTACGTACTCTTC 57.991 45.455 0.00 0.00 40.78 2.87
1781 6054 3.686726 ACGACCGAATTACGTACTCTTCT 59.313 43.478 0.00 0.00 40.78 2.85
1803 6076 2.070573 ACCAATCACACCCCCTAAAGT 58.929 47.619 0.00 0.00 0.00 2.66
1804 6077 2.449345 ACCAATCACACCCCCTAAAGTT 59.551 45.455 0.00 0.00 0.00 2.66
1819 6092 6.295067 CCCCTAAAGTTAACAGAATTTGGGTG 60.295 42.308 20.32 9.01 32.96 4.61
1822 6095 8.082242 CCTAAAGTTAACAGAATTTGGGTGAAG 58.918 37.037 8.61 0.00 30.94 3.02
1955 6230 9.748708 CTATTTGTATTGATTTGGTATTGTGGG 57.251 33.333 0.00 0.00 0.00 4.61
1999 6274 7.826260 ACCTTGAACAAAGTGTACAAATTTG 57.174 32.000 23.45 23.45 39.32 2.32
2000 6275 7.607250 ACCTTGAACAAAGTGTACAAATTTGA 58.393 30.769 28.39 12.94 37.37 2.69
2001 6276 7.544217 ACCTTGAACAAAGTGTACAAATTTGAC 59.456 33.333 28.39 22.60 37.37 3.18
2002 6277 7.759433 CCTTGAACAAAGTGTACAAATTTGACT 59.241 33.333 28.39 14.29 37.37 3.41
2003 6278 9.139174 CTTGAACAAAGTGTACAAATTTGACTT 57.861 29.630 28.39 18.92 37.37 3.01
2004 6279 8.459521 TGAACAAAGTGTACAAATTTGACTTG 57.540 30.769 28.39 17.34 37.37 3.16
2005 6280 6.885735 ACAAAGTGTACAAATTTGACTTGC 57.114 33.333 28.39 6.79 37.37 4.01
2006 6281 6.393990 ACAAAGTGTACAAATTTGACTTGCA 58.606 32.000 28.39 9.33 37.37 4.08
2007 6282 6.870965 ACAAAGTGTACAAATTTGACTTGCAA 59.129 30.769 28.39 0.00 37.37 4.08
2008 6283 7.063308 ACAAAGTGTACAAATTTGACTTGCAAG 59.937 33.333 28.39 24.84 37.87 4.01
2014 6289 7.600375 TGTACAAATTTGACTTGCAAGTTGAAA 59.400 29.630 31.58 28.75 39.88 2.69
2040 6315 9.851686 ACAAAGCTAATATGTGGATTGAATAGA 57.148 29.630 0.00 0.00 0.00 1.98
2049 6324 6.961359 TGTGGATTGAATAGAACTTGTACG 57.039 37.500 0.00 0.00 0.00 3.67
2050 6325 6.693466 TGTGGATTGAATAGAACTTGTACGA 58.307 36.000 0.00 0.00 0.00 3.43
2051 6326 6.811665 TGTGGATTGAATAGAACTTGTACGAG 59.188 38.462 8.69 8.69 0.00 4.18
2052 6327 6.812160 GTGGATTGAATAGAACTTGTACGAGT 59.188 38.462 10.17 10.17 0.00 4.18
2053 6328 7.972277 GTGGATTGAATAGAACTTGTACGAGTA 59.028 37.037 16.29 1.33 0.00 2.59
2054 6329 7.972277 TGGATTGAATAGAACTTGTACGAGTAC 59.028 37.037 16.29 6.46 36.63 2.73
2055 6330 7.165483 GGATTGAATAGAACTTGTACGAGTACG 59.835 40.741 16.29 0.00 45.75 3.67
2056 6331 6.726258 TGAATAGAACTTGTACGAGTACGA 57.274 37.500 16.29 4.95 42.66 3.43
2057 6332 7.132694 TGAATAGAACTTGTACGAGTACGAA 57.867 36.000 16.29 3.45 42.66 3.85
2058 6333 7.017645 TGAATAGAACTTGTACGAGTACGAAC 58.982 38.462 16.29 7.53 42.66 3.95
2059 6334 4.818534 AGAACTTGTACGAGTACGAACA 57.181 40.909 16.29 0.00 42.66 3.18
2060 6335 4.531332 AGAACTTGTACGAGTACGAACAC 58.469 43.478 16.29 3.22 42.66 3.32
2061 6336 4.274459 AGAACTTGTACGAGTACGAACACT 59.726 41.667 16.29 0.00 42.66 3.55
2062 6337 4.139183 ACTTGTACGAGTACGAACACTC 57.861 45.455 14.42 0.00 42.66 3.51
2063 6338 3.058639 ACTTGTACGAGTACGAACACTCC 60.059 47.826 14.42 0.30 41.65 3.85
2064 6339 2.493035 TGTACGAGTACGAACACTCCA 58.507 47.619 8.62 2.30 41.65 3.86
2065 6340 3.076621 TGTACGAGTACGAACACTCCAT 58.923 45.455 8.62 3.52 41.65 3.41
2066 6341 2.631418 ACGAGTACGAACACTCCATG 57.369 50.000 9.76 0.00 41.65 3.66
2067 6342 2.156917 ACGAGTACGAACACTCCATGA 58.843 47.619 0.00 0.00 41.65 3.07
2068 6343 2.095364 ACGAGTACGAACACTCCATGAC 60.095 50.000 0.00 0.00 41.65 3.06
2069 6344 2.095415 CGAGTACGAACACTCCATGACA 60.095 50.000 0.00 0.00 41.65 3.58
2070 6345 3.610821 CGAGTACGAACACTCCATGACAA 60.611 47.826 0.00 0.00 41.65 3.18
2071 6346 3.650139 AGTACGAACACTCCATGACAAC 58.350 45.455 0.00 0.00 0.00 3.32
2072 6347 2.910688 ACGAACACTCCATGACAACT 57.089 45.000 0.00 0.00 0.00 3.16
2073 6348 3.194005 ACGAACACTCCATGACAACTT 57.806 42.857 0.00 0.00 0.00 2.66
2074 6349 3.131396 ACGAACACTCCATGACAACTTC 58.869 45.455 0.00 0.00 0.00 3.01
2075 6350 3.130633 CGAACACTCCATGACAACTTCA 58.869 45.455 0.00 0.00 39.11 3.02
2076 6351 3.748048 CGAACACTCCATGACAACTTCAT 59.252 43.478 0.00 0.00 46.75 2.57
2084 6359 2.780065 TGACAACTTCATGCTTGTGC 57.220 45.000 7.68 0.00 40.20 4.57
2101 6376 4.680237 CAAGGCACGGTCCGCAGA 62.680 66.667 12.28 0.00 0.00 4.26
2102 6377 4.681978 AAGGCACGGTCCGCAGAC 62.682 66.667 12.28 6.62 42.73 3.51
2108 6383 3.190849 CGGTCCGCAGACTGCATG 61.191 66.667 26.32 16.61 45.36 4.06
2109 6384 3.503363 GGTCCGCAGACTGCATGC 61.503 66.667 26.32 11.82 45.36 4.06
2110 6385 2.435586 GTCCGCAGACTGCATGCT 60.436 61.111 26.32 0.00 45.36 3.79
2111 6386 2.125391 TCCGCAGACTGCATGCTC 60.125 61.111 26.32 9.17 45.36 4.26
2112 6387 3.200593 CCGCAGACTGCATGCTCC 61.201 66.667 26.32 7.80 45.36 4.70
2113 6388 3.561213 CGCAGACTGCATGCTCCG 61.561 66.667 26.32 9.80 45.36 4.63
2114 6389 2.125391 GCAGACTGCATGCTCCGA 60.125 61.111 22.62 0.00 44.26 4.55
2115 6390 1.742880 GCAGACTGCATGCTCCGAA 60.743 57.895 22.62 0.00 44.26 4.30
2116 6391 1.703438 GCAGACTGCATGCTCCGAAG 61.703 60.000 22.62 9.90 44.26 3.79
2130 6405 3.483954 CGAAGGATCCAATGGTGCT 57.516 52.632 15.82 0.00 0.00 4.40
2131 6406 1.303309 CGAAGGATCCAATGGTGCTC 58.697 55.000 15.82 0.00 0.00 4.26
2132 6407 1.685148 GAAGGATCCAATGGTGCTCC 58.315 55.000 15.82 4.76 0.00 4.70
2133 6408 1.213926 GAAGGATCCAATGGTGCTCCT 59.786 52.381 15.82 12.67 37.12 3.69
2134 6409 0.842635 AGGATCCAATGGTGCTCCTC 59.157 55.000 15.82 0.00 32.65 3.71
2135 6410 0.548031 GGATCCAATGGTGCTCCTCA 59.452 55.000 6.95 0.00 34.23 3.86
2136 6411 1.064463 GGATCCAATGGTGCTCCTCAA 60.064 52.381 6.95 0.00 34.23 3.02
2137 6412 2.621407 GGATCCAATGGTGCTCCTCAAA 60.621 50.000 6.95 0.00 34.23 2.69
2138 6413 1.909700 TCCAATGGTGCTCCTCAAAC 58.090 50.000 6.34 0.00 34.23 2.93
2139 6414 1.425066 TCCAATGGTGCTCCTCAAACT 59.575 47.619 6.34 0.00 34.23 2.66
2140 6415 1.815003 CCAATGGTGCTCCTCAAACTC 59.185 52.381 6.34 0.00 34.23 3.01
2141 6416 1.466167 CAATGGTGCTCCTCAAACTCG 59.534 52.381 6.34 0.00 34.23 4.18
2142 6417 0.976641 ATGGTGCTCCTCAAACTCGA 59.023 50.000 6.34 0.00 34.23 4.04
2143 6418 0.033504 TGGTGCTCCTCAAACTCGAC 59.966 55.000 6.34 0.00 34.23 4.20
2144 6419 0.033504 GGTGCTCCTCAAACTCGACA 59.966 55.000 0.00 0.00 0.00 4.35
2145 6420 1.338200 GGTGCTCCTCAAACTCGACAT 60.338 52.381 0.00 0.00 0.00 3.06
2146 6421 2.094182 GGTGCTCCTCAAACTCGACATA 60.094 50.000 0.00 0.00 0.00 2.29
2147 6422 3.430929 GGTGCTCCTCAAACTCGACATAT 60.431 47.826 0.00 0.00 0.00 1.78
2148 6423 3.799420 GTGCTCCTCAAACTCGACATATC 59.201 47.826 0.00 0.00 0.00 1.63
2149 6424 3.181475 TGCTCCTCAAACTCGACATATCC 60.181 47.826 0.00 0.00 0.00 2.59
2150 6425 3.181475 GCTCCTCAAACTCGACATATCCA 60.181 47.826 0.00 0.00 0.00 3.41
2151 6426 4.680708 GCTCCTCAAACTCGACATATCCAA 60.681 45.833 0.00 0.00 0.00 3.53
2152 6427 5.414789 TCCTCAAACTCGACATATCCAAA 57.585 39.130 0.00 0.00 0.00 3.28
2153 6428 5.419542 TCCTCAAACTCGACATATCCAAAG 58.580 41.667 0.00 0.00 0.00 2.77
2154 6429 4.034510 CCTCAAACTCGACATATCCAAAGC 59.965 45.833 0.00 0.00 0.00 3.51
2155 6430 4.832248 TCAAACTCGACATATCCAAAGCT 58.168 39.130 0.00 0.00 0.00 3.74
2156 6431 5.245531 TCAAACTCGACATATCCAAAGCTT 58.754 37.500 0.00 0.00 0.00 3.74
2157 6432 5.705441 TCAAACTCGACATATCCAAAGCTTT 59.295 36.000 5.69 5.69 0.00 3.51
2158 6433 6.206634 TCAAACTCGACATATCCAAAGCTTTT 59.793 34.615 9.53 0.00 0.00 2.27
2159 6434 5.551760 ACTCGACATATCCAAAGCTTTTG 57.448 39.130 9.53 6.43 0.00 2.44
2160 6435 5.245531 ACTCGACATATCCAAAGCTTTTGA 58.754 37.500 14.69 14.69 0.00 2.69
2161 6436 5.122396 ACTCGACATATCCAAAGCTTTTGAC 59.878 40.000 14.64 7.51 0.00 3.18
2162 6437 5.000591 TCGACATATCCAAAGCTTTTGACA 58.999 37.500 14.64 4.38 0.00 3.58
2163 6438 5.088739 CGACATATCCAAAGCTTTTGACAC 58.911 41.667 14.64 5.02 0.00 3.67
2164 6439 5.391312 ACATATCCAAAGCTTTTGACACC 57.609 39.130 14.64 0.00 0.00 4.16
2165 6440 4.082787 ACATATCCAAAGCTTTTGACACCG 60.083 41.667 14.64 7.08 0.00 4.94
2166 6441 1.757682 TCCAAAGCTTTTGACACCGT 58.242 45.000 9.53 0.00 0.00 4.83
2167 6442 1.403679 TCCAAAGCTTTTGACACCGTG 59.596 47.619 9.53 0.00 0.00 4.94
2168 6443 1.199624 CAAAGCTTTTGACACCGTGC 58.800 50.000 9.53 0.00 0.00 5.34
2169 6444 0.814457 AAAGCTTTTGACACCGTGCA 59.186 45.000 5.69 0.00 0.00 4.57
2170 6445 0.814457 AAGCTTTTGACACCGTGCAA 59.186 45.000 0.00 1.54 0.00 4.08
2171 6446 1.032014 AGCTTTTGACACCGTGCAAT 58.968 45.000 0.00 0.00 0.00 3.56
2172 6447 2.226330 AGCTTTTGACACCGTGCAATA 58.774 42.857 0.00 0.00 0.00 1.90
2173 6448 2.226437 AGCTTTTGACACCGTGCAATAG 59.774 45.455 15.23 15.23 0.00 1.73
2174 6449 2.584791 CTTTTGACACCGTGCAATAGC 58.415 47.619 0.00 0.00 42.57 2.97
2175 6450 0.878416 TTTGACACCGTGCAATAGCC 59.122 50.000 0.00 0.00 41.13 3.93
2176 6451 1.295357 TTGACACCGTGCAATAGCCG 61.295 55.000 0.00 0.00 41.13 5.52
2177 6452 1.740296 GACACCGTGCAATAGCCGT 60.740 57.895 0.00 0.00 41.13 5.68
2178 6453 1.296056 GACACCGTGCAATAGCCGTT 61.296 55.000 0.00 0.00 41.13 4.44
2179 6454 0.887387 ACACCGTGCAATAGCCGTTT 60.887 50.000 0.00 0.00 41.13 3.60
2180 6455 0.239879 CACCGTGCAATAGCCGTTTT 59.760 50.000 0.00 0.00 41.13 2.43
2181 6456 0.955905 ACCGTGCAATAGCCGTTTTT 59.044 45.000 0.00 0.00 41.13 1.94
2182 6457 1.335506 ACCGTGCAATAGCCGTTTTTG 60.336 47.619 0.00 0.00 41.13 2.44
2183 6458 1.335935 CGTGCAATAGCCGTTTTTGG 58.664 50.000 0.00 0.00 41.13 3.28
2184 6459 1.335506 CGTGCAATAGCCGTTTTTGGT 60.336 47.619 0.00 0.00 41.13 3.67
2185 6460 2.058057 GTGCAATAGCCGTTTTTGGTG 58.942 47.619 0.00 0.00 41.13 4.17
2186 6461 1.000283 TGCAATAGCCGTTTTTGGTGG 60.000 47.619 0.00 0.00 41.13 4.61
2187 6462 1.271102 GCAATAGCCGTTTTTGGTGGA 59.729 47.619 0.00 0.00 33.58 4.02
2188 6463 2.671070 GCAATAGCCGTTTTTGGTGGAG 60.671 50.000 0.00 0.00 33.58 3.86
2189 6464 1.834188 ATAGCCGTTTTTGGTGGAGG 58.166 50.000 0.00 0.00 0.00 4.30
2190 6465 0.475044 TAGCCGTTTTTGGTGGAGGT 59.525 50.000 0.00 0.00 0.00 3.85
2191 6466 0.396556 AGCCGTTTTTGGTGGAGGTT 60.397 50.000 0.00 0.00 0.00 3.50
2192 6467 0.031585 GCCGTTTTTGGTGGAGGTTC 59.968 55.000 0.00 0.00 0.00 3.62
2193 6468 1.687563 CCGTTTTTGGTGGAGGTTCT 58.312 50.000 0.00 0.00 0.00 3.01
2194 6469 1.336755 CCGTTTTTGGTGGAGGTTCTG 59.663 52.381 0.00 0.00 0.00 3.02
2195 6470 2.021457 CGTTTTTGGTGGAGGTTCTGT 58.979 47.619 0.00 0.00 0.00 3.41
2196 6471 2.032924 CGTTTTTGGTGGAGGTTCTGTC 59.967 50.000 0.00 0.00 0.00 3.51
2197 6472 3.288092 GTTTTTGGTGGAGGTTCTGTCT 58.712 45.455 0.00 0.00 0.00 3.41
2198 6473 3.662759 TTTTGGTGGAGGTTCTGTCTT 57.337 42.857 0.00 0.00 0.00 3.01
2199 6474 2.930826 TTGGTGGAGGTTCTGTCTTC 57.069 50.000 0.00 0.00 0.00 2.87
2200 6475 0.679505 TGGTGGAGGTTCTGTCTTCG 59.320 55.000 0.00 0.00 0.00 3.79
2201 6476 0.670854 GGTGGAGGTTCTGTCTTCGC 60.671 60.000 0.00 0.00 0.00 4.70
2202 6477 0.318762 GTGGAGGTTCTGTCTTCGCT 59.681 55.000 0.00 0.00 0.00 4.93
2203 6478 0.318441 TGGAGGTTCTGTCTTCGCTG 59.682 55.000 0.00 0.00 0.00 5.18
2204 6479 0.390472 GGAGGTTCTGTCTTCGCTGG 60.390 60.000 0.00 0.00 0.00 4.85
2205 6480 0.390472 GAGGTTCTGTCTTCGCTGGG 60.390 60.000 0.00 0.00 0.00 4.45
2206 6481 1.122019 AGGTTCTGTCTTCGCTGGGT 61.122 55.000 0.00 0.00 0.00 4.51
2207 6482 0.250338 GGTTCTGTCTTCGCTGGGTT 60.250 55.000 0.00 0.00 0.00 4.11
2208 6483 1.594331 GTTCTGTCTTCGCTGGGTTT 58.406 50.000 0.00 0.00 0.00 3.27
2209 6484 1.947456 GTTCTGTCTTCGCTGGGTTTT 59.053 47.619 0.00 0.00 0.00 2.43
2210 6485 1.593196 TCTGTCTTCGCTGGGTTTTG 58.407 50.000 0.00 0.00 0.00 2.44
2211 6486 0.593128 CTGTCTTCGCTGGGTTTTGG 59.407 55.000 0.00 0.00 0.00 3.28
2212 6487 0.821711 TGTCTTCGCTGGGTTTTGGG 60.822 55.000 0.00 0.00 0.00 4.12
2213 6488 1.901464 TCTTCGCTGGGTTTTGGGC 60.901 57.895 0.00 0.00 0.00 5.36
2214 6489 2.915137 TTCGCTGGGTTTTGGGCC 60.915 61.111 0.00 0.00 0.00 5.80
2215 6490 3.740495 TTCGCTGGGTTTTGGGCCA 62.740 57.895 0.00 0.00 0.00 5.36
2216 6491 3.230245 CGCTGGGTTTTGGGCCAA 61.230 61.111 16.66 16.66 0.00 4.52
2217 6492 2.801631 CGCTGGGTTTTGGGCCAAA 61.802 57.895 27.28 27.28 0.00 3.28
2218 6493 1.071299 GCTGGGTTTTGGGCCAAAG 59.929 57.895 28.89 19.32 34.72 2.77
2219 6494 1.695114 GCTGGGTTTTGGGCCAAAGT 61.695 55.000 28.89 0.00 34.72 2.66
2220 6495 0.106521 CTGGGTTTTGGGCCAAAGTG 59.893 55.000 28.89 15.52 34.72 3.16
2221 6496 1.341156 TGGGTTTTGGGCCAAAGTGG 61.341 55.000 28.89 0.00 41.55 4.00
2230 6505 3.058160 CCAAAGTGGCTCGCCTGG 61.058 66.667 9.65 4.59 36.94 4.45
2231 6506 2.032528 CAAAGTGGCTCGCCTGGA 59.967 61.111 9.65 0.00 36.94 3.86
2232 6507 1.377725 CAAAGTGGCTCGCCTGGAT 60.378 57.895 9.65 0.00 36.94 3.41
2233 6508 0.107703 CAAAGTGGCTCGCCTGGATA 60.108 55.000 9.65 0.00 36.94 2.59
2234 6509 0.839946 AAAGTGGCTCGCCTGGATAT 59.160 50.000 9.65 0.00 36.94 1.63
2235 6510 0.107456 AAGTGGCTCGCCTGGATATG 59.893 55.000 9.65 0.00 36.94 1.78
2236 6511 1.050988 AGTGGCTCGCCTGGATATGT 61.051 55.000 9.65 0.00 36.94 2.29
2237 6512 0.882042 GTGGCTCGCCTGGATATGTG 60.882 60.000 9.65 0.00 36.94 3.21
2238 6513 1.302033 GGCTCGCCTGGATATGTGG 60.302 63.158 0.00 0.00 0.00 4.17
2239 6514 1.447643 GCTCGCCTGGATATGTGGT 59.552 57.895 0.00 0.00 0.00 4.16
2240 6515 0.601311 GCTCGCCTGGATATGTGGTC 60.601 60.000 0.00 0.00 0.00 4.02
2241 6516 1.043816 CTCGCCTGGATATGTGGTCT 58.956 55.000 0.00 0.00 0.00 3.85
2242 6517 0.752658 TCGCCTGGATATGTGGTCTG 59.247 55.000 0.00 0.00 0.00 3.51
2243 6518 0.465705 CGCCTGGATATGTGGTCTGT 59.534 55.000 0.00 0.00 0.00 3.41
2244 6519 1.134401 CGCCTGGATATGTGGTCTGTT 60.134 52.381 0.00 0.00 0.00 3.16
2245 6520 2.292267 GCCTGGATATGTGGTCTGTTG 58.708 52.381 0.00 0.00 0.00 3.33
2246 6521 2.923121 CCTGGATATGTGGTCTGTTGG 58.077 52.381 0.00 0.00 0.00 3.77
2247 6522 2.292267 CTGGATATGTGGTCTGTTGGC 58.708 52.381 0.00 0.00 0.00 4.52
2248 6523 1.299541 GGATATGTGGTCTGTTGGCG 58.700 55.000 0.00 0.00 0.00 5.69
2249 6524 1.134521 GGATATGTGGTCTGTTGGCGA 60.135 52.381 0.00 0.00 0.00 5.54
2250 6525 1.933853 GATATGTGGTCTGTTGGCGAC 59.066 52.381 0.00 0.00 0.00 5.19
2251 6526 0.389296 TATGTGGTCTGTTGGCGACG 60.389 55.000 0.00 0.00 32.24 5.12
2252 6527 2.279918 GTGGTCTGTTGGCGACGT 60.280 61.111 0.00 0.00 32.24 4.34
2253 6528 2.028484 TGGTCTGTTGGCGACGTC 59.972 61.111 5.18 5.18 32.24 4.34
2254 6529 2.737376 GGTCTGTTGGCGACGTCC 60.737 66.667 10.58 2.55 32.24 4.79
2255 6530 2.028484 GTCTGTTGGCGACGTCCA 59.972 61.111 10.58 0.00 0.00 4.02
2256 6531 2.028484 TCTGTTGGCGACGTCCAC 59.972 61.111 10.58 3.65 35.50 4.02
2257 6532 3.041940 CTGTTGGCGACGTCCACC 61.042 66.667 10.58 12.57 35.50 4.61
2258 6533 3.800685 CTGTTGGCGACGTCCACCA 62.801 63.158 18.46 18.46 35.50 4.17
2259 6534 2.358247 GTTGGCGACGTCCACCAT 60.358 61.111 21.86 0.00 35.50 3.55
2260 6535 2.047655 TTGGCGACGTCCACCATC 60.048 61.111 21.86 2.49 35.50 3.51
2261 6536 2.873525 TTGGCGACGTCCACCATCA 61.874 57.895 21.86 8.72 35.50 3.07
2262 6537 2.047655 GGCGACGTCCACCATCAA 60.048 61.111 15.57 0.00 0.00 2.57
2263 6538 2.100631 GGCGACGTCCACCATCAAG 61.101 63.158 15.57 0.00 0.00 3.02
2264 6539 1.080093 GCGACGTCCACCATCAAGA 60.080 57.895 10.58 0.00 0.00 3.02
2265 6540 0.460284 GCGACGTCCACCATCAAGAT 60.460 55.000 10.58 0.00 0.00 2.40
2266 6541 1.560923 CGACGTCCACCATCAAGATC 58.439 55.000 10.58 0.00 0.00 2.75
2267 6542 1.560923 GACGTCCACCATCAAGATCG 58.439 55.000 3.51 0.00 0.00 3.69
2268 6543 0.460284 ACGTCCACCATCAAGATCGC 60.460 55.000 0.00 0.00 0.00 4.58
2269 6544 0.179100 CGTCCACCATCAAGATCGCT 60.179 55.000 0.00 0.00 0.00 4.93
2270 6545 1.293924 GTCCACCATCAAGATCGCTG 58.706 55.000 0.00 0.00 0.00 5.18
2271 6546 0.904649 TCCACCATCAAGATCGCTGT 59.095 50.000 0.00 0.00 0.00 4.40
2272 6547 1.134699 TCCACCATCAAGATCGCTGTC 60.135 52.381 0.00 0.00 0.00 3.51
2273 6548 1.405933 CCACCATCAAGATCGCTGTCA 60.406 52.381 0.00 0.00 0.00 3.58
2274 6549 2.349590 CACCATCAAGATCGCTGTCAA 58.650 47.619 0.00 0.00 0.00 3.18
2275 6550 2.941064 CACCATCAAGATCGCTGTCAAT 59.059 45.455 0.00 0.00 0.00 2.57
2276 6551 2.941064 ACCATCAAGATCGCTGTCAATG 59.059 45.455 0.00 0.00 0.00 2.82
2277 6552 2.289820 CCATCAAGATCGCTGTCAATGG 59.710 50.000 0.00 0.00 0.00 3.16
2278 6553 1.372582 TCAAGATCGCTGTCAATGGC 58.627 50.000 0.00 0.00 0.00 4.40
2279 6554 1.089112 CAAGATCGCTGTCAATGGCA 58.911 50.000 0.00 0.00 0.00 4.92
2280 6555 1.674441 CAAGATCGCTGTCAATGGCAT 59.326 47.619 0.00 0.00 0.00 4.40
2281 6556 2.874086 CAAGATCGCTGTCAATGGCATA 59.126 45.455 0.00 0.00 0.00 3.14
2282 6557 2.763933 AGATCGCTGTCAATGGCATAG 58.236 47.619 0.00 0.00 0.00 2.23
2283 6558 1.196354 GATCGCTGTCAATGGCATAGC 59.804 52.381 9.44 9.44 0.00 2.97
2284 6559 0.107752 TCGCTGTCAATGGCATAGCA 60.108 50.000 17.48 8.93 34.16 3.49
2285 6560 0.306840 CGCTGTCAATGGCATAGCAG 59.693 55.000 17.48 16.96 34.16 4.24
2286 6561 0.666913 GCTGTCAATGGCATAGCAGG 59.333 55.000 19.99 6.64 34.64 4.85
2287 6562 1.748244 GCTGTCAATGGCATAGCAGGA 60.748 52.381 19.99 5.28 34.64 3.86
2288 6563 2.219458 CTGTCAATGGCATAGCAGGAG 58.781 52.381 0.00 0.00 0.00 3.69
2289 6564 1.839354 TGTCAATGGCATAGCAGGAGA 59.161 47.619 0.00 0.00 0.00 3.71
2290 6565 2.158856 TGTCAATGGCATAGCAGGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
2291 6566 2.103771 GTCAATGGCATAGCAGGAGAGA 59.896 50.000 0.00 0.00 0.00 3.10
2292 6567 2.977580 TCAATGGCATAGCAGGAGAGAT 59.022 45.455 0.00 0.00 0.00 2.75
2293 6568 3.007723 TCAATGGCATAGCAGGAGAGATC 59.992 47.826 0.00 0.00 0.00 2.75
2294 6569 2.092598 TGGCATAGCAGGAGAGATCA 57.907 50.000 0.00 0.00 0.00 2.92
2295 6570 2.617658 TGGCATAGCAGGAGAGATCAT 58.382 47.619 0.00 0.00 0.00 2.45
2296 6571 2.566279 TGGCATAGCAGGAGAGATCATC 59.434 50.000 0.00 0.00 0.00 2.92
2297 6572 2.833338 GGCATAGCAGGAGAGATCATCT 59.167 50.000 0.00 0.00 42.61 2.90
2298 6573 4.022603 GGCATAGCAGGAGAGATCATCTA 58.977 47.826 0.00 0.00 38.84 1.98
2299 6574 4.142182 GGCATAGCAGGAGAGATCATCTAC 60.142 50.000 0.00 0.00 38.84 2.59
2300 6575 4.462132 GCATAGCAGGAGAGATCATCTACA 59.538 45.833 0.00 0.00 42.01 2.74
2301 6576 5.047448 GCATAGCAGGAGAGATCATCTACAA 60.047 44.000 0.00 0.00 42.01 2.41
2302 6577 4.935352 AGCAGGAGAGATCATCTACAAC 57.065 45.455 0.00 0.00 42.01 3.32
2303 6578 4.545678 AGCAGGAGAGATCATCTACAACT 58.454 43.478 0.00 0.00 42.01 3.16
2304 6579 4.341806 AGCAGGAGAGATCATCTACAACTG 59.658 45.833 0.00 0.00 42.01 3.16
2305 6580 4.099266 GCAGGAGAGATCATCTACAACTGT 59.901 45.833 0.00 0.00 42.01 3.55
2306 6581 5.735922 GCAGGAGAGATCATCTACAACTGTC 60.736 48.000 0.00 0.00 42.01 3.51
2307 6582 5.359292 CAGGAGAGATCATCTACAACTGTCA 59.641 44.000 0.00 0.00 42.01 3.58
2308 6583 5.593909 AGGAGAGATCATCTACAACTGTCAG 59.406 44.000 0.00 0.00 42.01 3.51
2309 6584 5.221224 GGAGAGATCATCTACAACTGTCAGG 60.221 48.000 4.53 0.00 38.94 3.86
2310 6585 4.648762 AGAGATCATCTACAACTGTCAGGG 59.351 45.833 4.53 0.00 36.10 4.45
2311 6586 3.133721 AGATCATCTACAACTGTCAGGGC 59.866 47.826 4.53 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.249868 CTCGGGCAAGTGTTGAGACA 60.250 55.000 0.00 0.00 0.00 3.41
97 98 9.946165 CCGATTACCTTATTGGAAAAATAAGTC 57.054 33.333 13.84 6.60 38.12 3.01
117 118 4.720773 TCCCACCTTTAATGGTACCGATTA 59.279 41.667 12.39 9.61 38.45 1.75
130 131 0.250553 CGCCAAGTGTCCCACCTTTA 60.251 55.000 0.00 0.00 34.49 1.85
138 139 2.047179 GGTCTCCGCCAAGTGTCC 60.047 66.667 0.00 0.00 0.00 4.02
166 167 7.106239 CCTGGAGTTTTGTCTATCAACTACAT 58.894 38.462 0.00 0.00 35.61 2.29
168 169 6.369065 CACCTGGAGTTTTGTCTATCAACTAC 59.631 42.308 0.00 0.00 35.61 2.73
180 211 9.143631 GATTTGATTTAATCACCTGGAGTTTTG 57.856 33.333 7.19 0.00 39.39 2.44
282 313 9.387397 AGGGGGAGAAATAGACATTTTTAAAAA 57.613 29.630 15.38 15.38 34.44 1.94
365 397 5.344743 AGTTGGTAGGAGTACATGACATG 57.655 43.478 14.02 14.02 0.00 3.21
420 452 4.351192 GTTTCAAGAATGCAAACTGTCGT 58.649 39.130 0.00 0.00 0.00 4.34
421 453 3.730715 GGTTTCAAGAATGCAAACTGTCG 59.269 43.478 0.00 0.00 32.22 4.35
447 479 0.403655 TCAGTGCATTTGGCCCTGTA 59.596 50.000 0.00 0.00 46.61 2.74
507 539 1.325640 CACGATCAATTGAGCAGGTCG 59.674 52.381 22.50 21.67 0.00 4.79
609 694 2.487762 TGTTTGATGGATTTCTGACCGC 59.512 45.455 0.00 0.00 0.00 5.68
626 711 0.238289 CTCACTGCCGCGAAATGTTT 59.762 50.000 8.23 0.00 0.00 2.83
629 714 2.099062 GCTCACTGCCGCGAAATG 59.901 61.111 8.23 0.00 35.15 2.32
802 900 2.123726 GCGGGCAATGGGGAAGAT 60.124 61.111 0.00 0.00 0.00 2.40
914 1013 2.255252 GATGGTTGTGGCGTGCAC 59.745 61.111 6.82 6.82 0.00 4.57
915 1014 2.203266 TGATGGTTGTGGCGTGCA 60.203 55.556 0.00 0.00 0.00 4.57
983 5214 3.066621 CGACATCTTCTCCCTTCTCTCTG 59.933 52.174 0.00 0.00 0.00 3.35
1242 5479 1.005037 GACGTCCATGGCAGTGACA 60.005 57.895 15.20 0.00 0.00 3.58
1248 5485 1.509463 GTAGACGACGTCCATGGCA 59.491 57.895 23.76 0.00 32.18 4.92
1296 5533 1.075226 AGCCTAGCCTCCGAATCCA 60.075 57.895 0.00 0.00 0.00 3.41
1341 5578 7.001099 TGCTAATCTGAATATCTGATCAGCA 57.999 36.000 18.36 16.53 46.85 4.41
1342 5579 7.098477 ACTGCTAATCTGAATATCTGATCAGC 58.902 38.462 18.36 12.80 42.82 4.26
1343 5580 9.791820 CTACTGCTAATCTGAATATCTGATCAG 57.208 37.037 17.07 17.07 43.51 2.90
1430 5667 7.581213 AATAACAGCGATTTATCCATTCCAA 57.419 32.000 0.00 0.00 0.00 3.53
1472 5710 4.558226 ACACACATCAGCCAAGAGATTA 57.442 40.909 0.00 0.00 0.00 1.75
1504 5750 7.287696 ACAGTTATGGACAGAAAACTTGGAAAT 59.712 33.333 0.00 0.00 29.93 2.17
1512 5758 3.120304 GGCGACAGTTATGGACAGAAAAC 60.120 47.826 0.00 0.00 0.00 2.43
1522 5772 3.303329 CGGATGATTTGGCGACAGTTATG 60.303 47.826 0.00 0.00 44.54 1.90
1550 5801 3.119245 GCACAGATACCCTAAACTGACGA 60.119 47.826 0.00 0.00 34.88 4.20
1569 5820 2.546795 CCCTCTATCGTCCTGAATGCAC 60.547 54.545 0.00 0.00 0.00 4.57
1586 5837 0.332972 AACCTTCAGCCATTCCCCTC 59.667 55.000 0.00 0.00 0.00 4.30
1587 5838 0.786435 AAACCTTCAGCCATTCCCCT 59.214 50.000 0.00 0.00 0.00 4.79
1589 5840 1.338105 GCAAAACCTTCAGCCATTCCC 60.338 52.381 0.00 0.00 0.00 3.97
1590 5841 1.620323 AGCAAAACCTTCAGCCATTCC 59.380 47.619 0.00 0.00 0.00 3.01
1591 5842 3.391506 AAGCAAAACCTTCAGCCATTC 57.608 42.857 0.00 0.00 0.00 2.67
1592 5843 3.469739 CAAAGCAAAACCTTCAGCCATT 58.530 40.909 0.00 0.00 0.00 3.16
1593 5844 2.224354 CCAAAGCAAAACCTTCAGCCAT 60.224 45.455 0.00 0.00 0.00 4.40
1594 5845 1.138661 CCAAAGCAAAACCTTCAGCCA 59.861 47.619 0.00 0.00 0.00 4.75
1595 5846 1.412343 TCCAAAGCAAAACCTTCAGCC 59.588 47.619 0.00 0.00 0.00 4.85
1596 5847 2.888834 TCCAAAGCAAAACCTTCAGC 57.111 45.000 0.00 0.00 0.00 4.26
1656 5925 6.571150 GCAGTTCTCAATCAAACAAATAGCCT 60.571 38.462 0.00 0.00 0.00 4.58
1657 5926 5.574443 GCAGTTCTCAATCAAACAAATAGCC 59.426 40.000 0.00 0.00 0.00 3.93
1684 5953 6.072452 AGGAAAGAAAAATAGAAGAGGCAACG 60.072 38.462 0.00 0.00 46.39 4.10
1687 5960 6.784031 AGAGGAAAGAAAAATAGAAGAGGCA 58.216 36.000 0.00 0.00 0.00 4.75
1702 5975 6.998074 TGATAGCTGAAAACAAAGAGGAAAGA 59.002 34.615 0.00 0.00 0.00 2.52
1704 5977 6.772716 ACTGATAGCTGAAAACAAAGAGGAAA 59.227 34.615 0.00 0.00 0.00 3.13
1712 5985 6.710295 TGCTAGAAACTGATAGCTGAAAACAA 59.290 34.615 0.00 0.00 43.87 2.83
1714 5987 6.147821 TGTGCTAGAAACTGATAGCTGAAAAC 59.852 38.462 0.00 0.00 43.87 2.43
1772 6045 5.176592 GGGTGTGATTGGTTAGAAGAGTAC 58.823 45.833 0.00 0.00 0.00 2.73
1773 6046 4.224370 GGGGTGTGATTGGTTAGAAGAGTA 59.776 45.833 0.00 0.00 0.00 2.59
1774 6047 3.009143 GGGGTGTGATTGGTTAGAAGAGT 59.991 47.826 0.00 0.00 0.00 3.24
1775 6048 3.610911 GGGGTGTGATTGGTTAGAAGAG 58.389 50.000 0.00 0.00 0.00 2.85
1776 6049 2.307686 GGGGGTGTGATTGGTTAGAAGA 59.692 50.000 0.00 0.00 0.00 2.87
1777 6050 2.308866 AGGGGGTGTGATTGGTTAGAAG 59.691 50.000 0.00 0.00 0.00 2.85
1778 6051 2.354328 AGGGGGTGTGATTGGTTAGAA 58.646 47.619 0.00 0.00 0.00 2.10
1779 6052 2.053747 AGGGGGTGTGATTGGTTAGA 57.946 50.000 0.00 0.00 0.00 2.10
1780 6053 4.263771 ACTTTAGGGGGTGTGATTGGTTAG 60.264 45.833 0.00 0.00 0.00 2.34
1781 6054 3.658705 ACTTTAGGGGGTGTGATTGGTTA 59.341 43.478 0.00 0.00 0.00 2.85
1803 6076 9.362151 AGATTTACTTCACCCAAATTCTGTTAA 57.638 29.630 0.00 0.00 0.00 2.01
1804 6077 8.934023 AGATTTACTTCACCCAAATTCTGTTA 57.066 30.769 0.00 0.00 0.00 2.41
1819 6092 9.794653 GTTTGACTTAAGTCGAAGATTTACTTC 57.205 33.333 30.44 16.19 45.99 3.01
1911 6186 6.429692 ACAAATAGAATCAACATTGGACACGA 59.570 34.615 0.00 0.00 0.00 4.35
1912 6187 6.611381 ACAAATAGAATCAACATTGGACACG 58.389 36.000 0.00 0.00 0.00 4.49
1977 6252 8.687824 AGTCAAATTTGTACACTTTGTTCAAG 57.312 30.769 17.47 4.35 38.53 3.02
1988 6263 6.625362 TCAACTTGCAAGTCAAATTTGTACA 58.375 32.000 31.20 7.41 38.57 2.90
1989 6264 7.518731 TTCAACTTGCAAGTCAAATTTGTAC 57.481 32.000 31.20 13.64 38.57 2.90
1995 6270 6.402442 GCTTTGTTTCAACTTGCAAGTCAAAT 60.402 34.615 31.20 14.02 38.57 2.32
1999 6274 4.176271 AGCTTTGTTTCAACTTGCAAGTC 58.824 39.130 31.20 18.81 38.57 3.01
2000 6275 4.192429 AGCTTTGTTTCAACTTGCAAGT 57.808 36.364 26.36 26.36 42.04 3.16
2001 6276 6.833342 ATTAGCTTTGTTTCAACTTGCAAG 57.167 33.333 24.84 24.84 0.00 4.01
2002 6277 7.925483 ACATATTAGCTTTGTTTCAACTTGCAA 59.075 29.630 0.00 0.00 0.00 4.08
2003 6278 7.381948 CACATATTAGCTTTGTTTCAACTTGCA 59.618 33.333 0.00 0.00 0.00 4.08
2004 6279 7.148755 CCACATATTAGCTTTGTTTCAACTTGC 60.149 37.037 0.00 0.00 0.00 4.01
2005 6280 8.081633 TCCACATATTAGCTTTGTTTCAACTTG 58.918 33.333 0.00 0.00 0.00 3.16
2006 6281 8.177119 TCCACATATTAGCTTTGTTTCAACTT 57.823 30.769 0.00 0.00 0.00 2.66
2007 6282 7.759489 TCCACATATTAGCTTTGTTTCAACT 57.241 32.000 0.00 0.00 0.00 3.16
2008 6283 8.863049 CAATCCACATATTAGCTTTGTTTCAAC 58.137 33.333 0.00 0.00 0.00 3.18
2014 6289 9.851686 TCTATTCAATCCACATATTAGCTTTGT 57.148 29.630 0.00 0.00 0.00 2.83
2039 6314 4.531332 AGTGTTCGTACTCGTACAAGTTC 58.469 43.478 7.86 0.00 45.55 3.01
2040 6315 4.531332 GAGTGTTCGTACTCGTACAAGTT 58.469 43.478 7.86 0.00 45.55 2.66
2041 6316 3.058639 GGAGTGTTCGTACTCGTACAAGT 60.059 47.826 7.86 0.00 45.55 3.16
2042 6317 3.058708 TGGAGTGTTCGTACTCGTACAAG 60.059 47.826 7.86 0.00 45.55 3.16
2043 6318 2.877786 TGGAGTGTTCGTACTCGTACAA 59.122 45.455 7.86 0.00 45.55 2.41
2044 6319 2.493035 TGGAGTGTTCGTACTCGTACA 58.507 47.619 7.86 0.00 46.29 2.90
2045 6320 3.125829 TCATGGAGTGTTCGTACTCGTAC 59.874 47.826 0.00 0.00 46.29 3.67
2046 6321 3.125829 GTCATGGAGTGTTCGTACTCGTA 59.874 47.826 0.00 4.32 46.29 3.43
2047 6322 2.095364 GTCATGGAGTGTTCGTACTCGT 60.095 50.000 0.00 1.73 46.29 4.18
2048 6323 2.095415 TGTCATGGAGTGTTCGTACTCG 60.095 50.000 0.00 0.00 46.29 4.18
2049 6324 3.570926 TGTCATGGAGTGTTCGTACTC 57.429 47.619 0.00 8.15 44.96 2.59
2050 6325 3.321111 AGTTGTCATGGAGTGTTCGTACT 59.679 43.478 0.00 0.00 0.00 2.73
2051 6326 3.650139 AGTTGTCATGGAGTGTTCGTAC 58.350 45.455 0.00 0.00 0.00 3.67
2052 6327 4.202172 TGAAGTTGTCATGGAGTGTTCGTA 60.202 41.667 0.00 0.00 0.00 3.43
2053 6328 2.910688 AGTTGTCATGGAGTGTTCGT 57.089 45.000 0.00 0.00 0.00 3.85
2054 6329 3.130633 TGAAGTTGTCATGGAGTGTTCG 58.869 45.455 0.00 0.00 0.00 3.95
2065 6340 2.780065 GCACAAGCATGAAGTTGTCA 57.220 45.000 0.00 0.00 41.67 3.58
2084 6359 4.680237 TCTGCGGACCGTGCCTTG 62.680 66.667 16.73 0.06 0.00 3.61
2085 6360 4.681978 GTCTGCGGACCGTGCCTT 62.682 66.667 15.20 0.00 36.53 4.35
2097 6372 1.703438 CTTCGGAGCATGCAGTCTGC 61.703 60.000 21.98 18.32 45.29 4.26
2098 6373 1.088340 CCTTCGGAGCATGCAGTCTG 61.088 60.000 21.98 14.69 0.00 3.51
2099 6374 1.220206 CCTTCGGAGCATGCAGTCT 59.780 57.895 21.98 0.00 0.00 3.24
2100 6375 0.179062 ATCCTTCGGAGCATGCAGTC 60.179 55.000 21.98 9.59 34.05 3.51
2101 6376 0.179062 GATCCTTCGGAGCATGCAGT 60.179 55.000 21.98 0.00 38.12 4.40
2102 6377 0.883814 GGATCCTTCGGAGCATGCAG 60.884 60.000 21.98 10.95 40.28 4.41
2103 6378 1.146930 GGATCCTTCGGAGCATGCA 59.853 57.895 21.98 0.00 40.28 3.96
2104 6379 0.464373 TTGGATCCTTCGGAGCATGC 60.464 55.000 14.23 10.51 40.28 4.06
2105 6380 1.878088 CATTGGATCCTTCGGAGCATG 59.122 52.381 14.23 0.00 40.28 4.06
2106 6381 1.202855 CCATTGGATCCTTCGGAGCAT 60.203 52.381 14.23 0.00 40.28 3.79
2107 6382 0.181114 CCATTGGATCCTTCGGAGCA 59.819 55.000 14.23 0.00 40.28 4.26
2108 6383 0.181350 ACCATTGGATCCTTCGGAGC 59.819 55.000 14.23 0.00 37.39 4.70
2109 6384 1.959042 CACCATTGGATCCTTCGGAG 58.041 55.000 14.23 5.22 34.05 4.63
2110 6385 0.107214 GCACCATTGGATCCTTCGGA 60.107 55.000 14.23 0.00 35.55 4.55
2111 6386 0.107017 AGCACCATTGGATCCTTCGG 60.107 55.000 14.23 12.39 0.00 4.30
2112 6387 1.303309 GAGCACCATTGGATCCTTCG 58.697 55.000 14.23 0.41 0.00 3.79
2113 6388 1.213926 AGGAGCACCATTGGATCCTTC 59.786 52.381 14.23 1.22 37.05 3.46
2114 6389 1.213926 GAGGAGCACCATTGGATCCTT 59.786 52.381 21.61 11.34 40.48 3.36
2115 6390 0.842635 GAGGAGCACCATTGGATCCT 59.157 55.000 21.15 21.15 43.08 3.24
2116 6391 0.548031 TGAGGAGCACCATTGGATCC 59.452 55.000 10.37 4.20 38.94 3.36
2117 6392 2.424956 GTTTGAGGAGCACCATTGGATC 59.575 50.000 10.37 4.36 38.94 3.36
2118 6393 2.042162 AGTTTGAGGAGCACCATTGGAT 59.958 45.455 10.37 0.00 38.94 3.41
2119 6394 1.425066 AGTTTGAGGAGCACCATTGGA 59.575 47.619 10.37 0.00 38.94 3.53
2120 6395 1.815003 GAGTTTGAGGAGCACCATTGG 59.185 52.381 2.07 0.00 38.94 3.16
2121 6396 1.466167 CGAGTTTGAGGAGCACCATTG 59.534 52.381 2.07 0.00 38.94 2.82
2122 6397 1.347707 TCGAGTTTGAGGAGCACCATT 59.652 47.619 2.07 0.00 38.94 3.16
2123 6398 0.976641 TCGAGTTTGAGGAGCACCAT 59.023 50.000 2.07 0.00 38.94 3.55
2124 6399 0.033504 GTCGAGTTTGAGGAGCACCA 59.966 55.000 2.07 0.00 38.94 4.17
2125 6400 0.033504 TGTCGAGTTTGAGGAGCACC 59.966 55.000 0.00 0.00 0.00 5.01
2126 6401 2.086054 ATGTCGAGTTTGAGGAGCAC 57.914 50.000 0.00 0.00 0.00 4.40
2127 6402 3.181475 GGATATGTCGAGTTTGAGGAGCA 60.181 47.826 0.00 0.00 0.00 4.26
2128 6403 3.181475 TGGATATGTCGAGTTTGAGGAGC 60.181 47.826 0.00 0.00 0.00 4.70
2129 6404 4.655762 TGGATATGTCGAGTTTGAGGAG 57.344 45.455 0.00 0.00 0.00 3.69
2130 6405 5.414789 TTTGGATATGTCGAGTTTGAGGA 57.585 39.130 0.00 0.00 0.00 3.71
2131 6406 4.034510 GCTTTGGATATGTCGAGTTTGAGG 59.965 45.833 0.00 0.00 0.00 3.86
2132 6407 4.872691 AGCTTTGGATATGTCGAGTTTGAG 59.127 41.667 0.00 0.00 0.00 3.02
2133 6408 4.832248 AGCTTTGGATATGTCGAGTTTGA 58.168 39.130 0.00 0.00 0.00 2.69
2134 6409 5.551760 AAGCTTTGGATATGTCGAGTTTG 57.448 39.130 0.00 0.00 0.00 2.93
2135 6410 6.206634 TCAAAAGCTTTGGATATGTCGAGTTT 59.793 34.615 13.54 0.00 0.00 2.66
2136 6411 5.705441 TCAAAAGCTTTGGATATGTCGAGTT 59.295 36.000 13.54 0.00 0.00 3.01
2137 6412 5.122396 GTCAAAAGCTTTGGATATGTCGAGT 59.878 40.000 19.15 0.00 0.00 4.18
2138 6413 5.122239 TGTCAAAAGCTTTGGATATGTCGAG 59.878 40.000 19.15 0.00 0.00 4.04
2139 6414 5.000591 TGTCAAAAGCTTTGGATATGTCGA 58.999 37.500 19.15 0.06 0.00 4.20
2140 6415 5.088739 GTGTCAAAAGCTTTGGATATGTCG 58.911 41.667 19.15 0.00 0.00 4.35
2141 6416 5.402398 GGTGTCAAAAGCTTTGGATATGTC 58.598 41.667 19.15 6.85 0.00 3.06
2142 6417 4.082787 CGGTGTCAAAAGCTTTGGATATGT 60.083 41.667 19.15 0.00 0.00 2.29
2143 6418 4.082787 ACGGTGTCAAAAGCTTTGGATATG 60.083 41.667 19.15 14.62 0.00 1.78
2144 6419 4.079253 ACGGTGTCAAAAGCTTTGGATAT 58.921 39.130 19.15 0.00 0.00 1.63
2145 6420 3.252215 CACGGTGTCAAAAGCTTTGGATA 59.748 43.478 19.15 13.96 0.00 2.59
2146 6421 2.034558 CACGGTGTCAAAAGCTTTGGAT 59.965 45.455 19.15 0.06 0.00 3.41
2147 6422 1.403679 CACGGTGTCAAAAGCTTTGGA 59.596 47.619 13.54 12.96 0.00 3.53
2148 6423 1.838913 CACGGTGTCAAAAGCTTTGG 58.161 50.000 13.54 10.31 0.00 3.28
2149 6424 1.199624 GCACGGTGTCAAAAGCTTTG 58.800 50.000 13.54 7.34 0.00 2.77
2150 6425 0.814457 TGCACGGTGTCAAAAGCTTT 59.186 45.000 5.69 5.69 0.00 3.51
2151 6426 0.814457 TTGCACGGTGTCAAAAGCTT 59.186 45.000 10.24 0.00 0.00 3.74
2152 6427 1.032014 ATTGCACGGTGTCAAAAGCT 58.968 45.000 17.41 3.78 0.00 3.74
2153 6428 2.584791 CTATTGCACGGTGTCAAAAGC 58.415 47.619 17.41 0.68 0.00 3.51
2154 6429 2.584791 GCTATTGCACGGTGTCAAAAG 58.415 47.619 17.41 8.10 39.41 2.27
2155 6430 1.268352 GGCTATTGCACGGTGTCAAAA 59.732 47.619 17.41 6.24 41.91 2.44
2156 6431 0.878416 GGCTATTGCACGGTGTCAAA 59.122 50.000 17.41 8.26 41.91 2.69
2157 6432 1.295357 CGGCTATTGCACGGTGTCAA 61.295 55.000 16.34 16.34 41.91 3.18
2158 6433 1.739929 CGGCTATTGCACGGTGTCA 60.740 57.895 10.24 5.62 41.91 3.58
2159 6434 1.296056 AACGGCTATTGCACGGTGTC 61.296 55.000 10.24 2.94 41.91 3.67
2160 6435 0.887387 AAACGGCTATTGCACGGTGT 60.887 50.000 10.24 0.00 41.91 4.16
2161 6436 0.239879 AAAACGGCTATTGCACGGTG 59.760 50.000 3.15 3.15 41.91 4.94
2162 6437 0.955905 AAAAACGGCTATTGCACGGT 59.044 45.000 12.62 5.20 41.91 4.83
2163 6438 1.335935 CAAAAACGGCTATTGCACGG 58.664 50.000 12.62 0.20 41.91 4.94
2164 6439 1.335506 ACCAAAAACGGCTATTGCACG 60.336 47.619 0.66 5.09 41.91 5.34
2165 6440 2.058057 CACCAAAAACGGCTATTGCAC 58.942 47.619 0.66 0.00 41.91 4.57
2166 6441 1.000283 CCACCAAAAACGGCTATTGCA 60.000 47.619 0.66 0.00 41.91 4.08
2167 6442 1.271102 TCCACCAAAAACGGCTATTGC 59.729 47.619 0.00 0.00 38.76 3.56
2168 6443 2.094752 CCTCCACCAAAAACGGCTATTG 60.095 50.000 0.00 0.00 0.00 1.90
2169 6444 2.167662 CCTCCACCAAAAACGGCTATT 58.832 47.619 0.00 0.00 0.00 1.73
2170 6445 1.074889 ACCTCCACCAAAAACGGCTAT 59.925 47.619 0.00 0.00 0.00 2.97
2171 6446 0.475044 ACCTCCACCAAAAACGGCTA 59.525 50.000 0.00 0.00 0.00 3.93
2172 6447 0.396556 AACCTCCACCAAAAACGGCT 60.397 50.000 0.00 0.00 0.00 5.52
2173 6448 0.031585 GAACCTCCACCAAAAACGGC 59.968 55.000 0.00 0.00 0.00 5.68
2174 6449 1.336755 CAGAACCTCCACCAAAAACGG 59.663 52.381 0.00 0.00 0.00 4.44
2175 6450 2.021457 ACAGAACCTCCACCAAAAACG 58.979 47.619 0.00 0.00 0.00 3.60
2176 6451 3.288092 AGACAGAACCTCCACCAAAAAC 58.712 45.455 0.00 0.00 0.00 2.43
2177 6452 3.662759 AGACAGAACCTCCACCAAAAA 57.337 42.857 0.00 0.00 0.00 1.94
2178 6453 3.551846 GAAGACAGAACCTCCACCAAAA 58.448 45.455 0.00 0.00 0.00 2.44
2179 6454 2.484770 CGAAGACAGAACCTCCACCAAA 60.485 50.000 0.00 0.00 0.00 3.28
2180 6455 1.070134 CGAAGACAGAACCTCCACCAA 59.930 52.381 0.00 0.00 0.00 3.67
2181 6456 0.679505 CGAAGACAGAACCTCCACCA 59.320 55.000 0.00 0.00 0.00 4.17
2182 6457 0.670854 GCGAAGACAGAACCTCCACC 60.671 60.000 0.00 0.00 0.00 4.61
2183 6458 0.318762 AGCGAAGACAGAACCTCCAC 59.681 55.000 0.00 0.00 0.00 4.02
2184 6459 0.318441 CAGCGAAGACAGAACCTCCA 59.682 55.000 0.00 0.00 0.00 3.86
2185 6460 0.390472 CCAGCGAAGACAGAACCTCC 60.390 60.000 0.00 0.00 0.00 4.30
2186 6461 0.390472 CCCAGCGAAGACAGAACCTC 60.390 60.000 0.00 0.00 0.00 3.85
2187 6462 1.122019 ACCCAGCGAAGACAGAACCT 61.122 55.000 0.00 0.00 0.00 3.50
2188 6463 0.250338 AACCCAGCGAAGACAGAACC 60.250 55.000 0.00 0.00 0.00 3.62
2189 6464 1.594331 AAACCCAGCGAAGACAGAAC 58.406 50.000 0.00 0.00 0.00 3.01
2190 6465 1.946768 CAAAACCCAGCGAAGACAGAA 59.053 47.619 0.00 0.00 0.00 3.02
2191 6466 1.593196 CAAAACCCAGCGAAGACAGA 58.407 50.000 0.00 0.00 0.00 3.41
2192 6467 0.593128 CCAAAACCCAGCGAAGACAG 59.407 55.000 0.00 0.00 0.00 3.51
2193 6468 0.821711 CCCAAAACCCAGCGAAGACA 60.822 55.000 0.00 0.00 0.00 3.41
2194 6469 1.956802 CCCAAAACCCAGCGAAGAC 59.043 57.895 0.00 0.00 0.00 3.01
2195 6470 1.901464 GCCCAAAACCCAGCGAAGA 60.901 57.895 0.00 0.00 0.00 2.87
2196 6471 2.650778 GCCCAAAACCCAGCGAAG 59.349 61.111 0.00 0.00 0.00 3.79
2197 6472 2.915137 GGCCCAAAACCCAGCGAA 60.915 61.111 0.00 0.00 0.00 4.70
2198 6473 3.740495 TTGGCCCAAAACCCAGCGA 62.740 57.895 0.00 0.00 31.73 4.93
2199 6474 2.713927 CTTTGGCCCAAAACCCAGCG 62.714 60.000 10.66 0.00 32.75 5.18
2200 6475 1.071299 CTTTGGCCCAAAACCCAGC 59.929 57.895 10.66 0.00 32.75 4.85
2201 6476 0.106521 CACTTTGGCCCAAAACCCAG 59.893 55.000 10.66 0.15 32.75 4.45
2202 6477 1.341156 CCACTTTGGCCCAAAACCCA 61.341 55.000 10.66 0.00 32.75 4.51
2203 6478 1.449782 CCACTTTGGCCCAAAACCC 59.550 57.895 10.66 0.00 32.75 4.11
2213 6488 2.826777 ATCCAGGCGAGCCACTTTGG 62.827 60.000 17.18 14.48 41.55 3.28
2214 6489 0.107703 TATCCAGGCGAGCCACTTTG 60.108 55.000 17.18 5.53 38.92 2.77
2215 6490 0.839946 ATATCCAGGCGAGCCACTTT 59.160 50.000 17.18 1.19 38.92 2.66
2216 6491 0.107456 CATATCCAGGCGAGCCACTT 59.893 55.000 17.18 0.83 38.92 3.16
2217 6492 1.050988 ACATATCCAGGCGAGCCACT 61.051 55.000 17.18 0.00 38.92 4.00
2218 6493 0.882042 CACATATCCAGGCGAGCCAC 60.882 60.000 17.18 0.00 38.92 5.01
2219 6494 1.447217 CACATATCCAGGCGAGCCA 59.553 57.895 17.18 0.00 38.92 4.75
2220 6495 1.302033 CCACATATCCAGGCGAGCC 60.302 63.158 5.89 5.89 0.00 4.70
2221 6496 0.601311 GACCACATATCCAGGCGAGC 60.601 60.000 0.00 0.00 0.00 5.03
2222 6497 1.043816 AGACCACATATCCAGGCGAG 58.956 55.000 0.00 0.00 0.00 5.03
2223 6498 0.752658 CAGACCACATATCCAGGCGA 59.247 55.000 0.00 0.00 0.00 5.54
2224 6499 0.465705 ACAGACCACATATCCAGGCG 59.534 55.000 0.00 0.00 0.00 5.52
2225 6500 2.292267 CAACAGACCACATATCCAGGC 58.708 52.381 0.00 0.00 0.00 4.85
2226 6501 2.923121 CCAACAGACCACATATCCAGG 58.077 52.381 0.00 0.00 0.00 4.45
2227 6502 2.292267 GCCAACAGACCACATATCCAG 58.708 52.381 0.00 0.00 0.00 3.86
2228 6503 1.406751 CGCCAACAGACCACATATCCA 60.407 52.381 0.00 0.00 0.00 3.41
2229 6504 1.134521 TCGCCAACAGACCACATATCC 60.135 52.381 0.00 0.00 0.00 2.59
2230 6505 1.933853 GTCGCCAACAGACCACATATC 59.066 52.381 0.00 0.00 32.78 1.63
2231 6506 1.739035 CGTCGCCAACAGACCACATAT 60.739 52.381 0.00 0.00 35.33 1.78
2232 6507 0.389296 CGTCGCCAACAGACCACATA 60.389 55.000 0.00 0.00 35.33 2.29
2233 6508 1.667830 CGTCGCCAACAGACCACAT 60.668 57.895 0.00 0.00 35.33 3.21
2234 6509 2.279851 CGTCGCCAACAGACCACA 60.280 61.111 0.00 0.00 35.33 4.17
2235 6510 2.279918 ACGTCGCCAACAGACCAC 60.280 61.111 0.00 0.00 35.33 4.16
2236 6511 2.028484 GACGTCGCCAACAGACCA 59.972 61.111 0.00 0.00 35.33 4.02
2237 6512 2.737376 GGACGTCGCCAACAGACC 60.737 66.667 9.92 0.00 35.33 3.85
2238 6513 2.028484 TGGACGTCGCCAACAGAC 59.972 61.111 9.92 0.00 34.31 3.51
2239 6514 2.028484 GTGGACGTCGCCAACAGA 59.972 61.111 9.92 0.00 40.20 3.41
2240 6515 3.041940 GGTGGACGTCGCCAACAG 61.042 66.667 18.99 0.00 45.19 3.16
2245 6520 2.047655 TTGATGGTGGACGTCGCC 60.048 61.111 17.61 17.61 46.03 5.54
2246 6521 0.460284 ATCTTGATGGTGGACGTCGC 60.460 55.000 9.92 4.80 37.96 5.19
2247 6522 1.560923 GATCTTGATGGTGGACGTCG 58.439 55.000 9.92 0.00 37.96 5.12
2248 6523 1.560923 CGATCTTGATGGTGGACGTC 58.439 55.000 7.13 7.13 35.60 4.34
2249 6524 0.460284 GCGATCTTGATGGTGGACGT 60.460 55.000 0.00 0.00 0.00 4.34
2250 6525 0.179100 AGCGATCTTGATGGTGGACG 60.179 55.000 0.00 0.00 0.00 4.79
2251 6526 1.293924 CAGCGATCTTGATGGTGGAC 58.706 55.000 0.00 0.00 0.00 4.02
2252 6527 0.904649 ACAGCGATCTTGATGGTGGA 59.095 50.000 12.80 0.00 35.52 4.02
2253 6528 1.293924 GACAGCGATCTTGATGGTGG 58.706 55.000 12.80 2.68 35.52 4.61
2254 6529 2.014335 TGACAGCGATCTTGATGGTG 57.986 50.000 0.00 0.00 37.16 4.17
2255 6530 2.768253 TTGACAGCGATCTTGATGGT 57.232 45.000 0.00 0.00 0.00 3.55
2256 6531 2.289820 CCATTGACAGCGATCTTGATGG 59.710 50.000 0.00 0.00 0.00 3.51
2257 6532 2.286831 GCCATTGACAGCGATCTTGATG 60.287 50.000 0.00 0.00 0.00 3.07
2258 6533 1.945394 GCCATTGACAGCGATCTTGAT 59.055 47.619 0.00 0.00 0.00 2.57
2259 6534 1.338960 TGCCATTGACAGCGATCTTGA 60.339 47.619 0.00 0.00 0.00 3.02
2260 6535 1.089112 TGCCATTGACAGCGATCTTG 58.911 50.000 0.00 0.00 0.00 3.02
2261 6536 2.048444 ATGCCATTGACAGCGATCTT 57.952 45.000 0.00 0.00 0.00 2.40
2262 6537 2.763933 CTATGCCATTGACAGCGATCT 58.236 47.619 0.00 0.00 0.00 2.75
2263 6538 1.196354 GCTATGCCATTGACAGCGATC 59.804 52.381 0.00 0.00 0.00 3.69
2264 6539 1.233019 GCTATGCCATTGACAGCGAT 58.767 50.000 0.00 0.00 0.00 4.58
2265 6540 0.107752 TGCTATGCCATTGACAGCGA 60.108 50.000 0.00 0.00 34.96 4.93
2266 6541 0.306840 CTGCTATGCCATTGACAGCG 59.693 55.000 0.00 0.00 34.96 5.18
2267 6542 0.666913 CCTGCTATGCCATTGACAGC 59.333 55.000 0.00 0.00 0.00 4.40
2268 6543 2.158856 TCTCCTGCTATGCCATTGACAG 60.159 50.000 0.00 0.00 0.00 3.51
2269 6544 1.839354 TCTCCTGCTATGCCATTGACA 59.161 47.619 0.00 0.00 0.00 3.58
2270 6545 2.103771 TCTCTCCTGCTATGCCATTGAC 59.896 50.000 0.00 0.00 0.00 3.18
2271 6546 2.401568 TCTCTCCTGCTATGCCATTGA 58.598 47.619 0.00 0.00 0.00 2.57
2272 6547 2.924757 TCTCTCCTGCTATGCCATTG 57.075 50.000 0.00 0.00 0.00 2.82
2273 6548 2.977580 TGATCTCTCCTGCTATGCCATT 59.022 45.455 0.00 0.00 0.00 3.16
2274 6549 2.617658 TGATCTCTCCTGCTATGCCAT 58.382 47.619 0.00 0.00 0.00 4.40
2275 6550 2.092598 TGATCTCTCCTGCTATGCCA 57.907 50.000 0.00 0.00 0.00 4.92
2276 6551 2.833338 AGATGATCTCTCCTGCTATGCC 59.167 50.000 0.00 0.00 0.00 4.40
2277 6552 4.462132 TGTAGATGATCTCTCCTGCTATGC 59.538 45.833 0.00 0.00 35.28 3.14
2278 6553 6.209192 AGTTGTAGATGATCTCTCCTGCTATG 59.791 42.308 0.00 0.00 35.28 2.23
2279 6554 6.209192 CAGTTGTAGATGATCTCTCCTGCTAT 59.791 42.308 0.00 0.00 35.28 2.97
2280 6555 5.534278 CAGTTGTAGATGATCTCTCCTGCTA 59.466 44.000 0.00 0.00 35.28 3.49
2281 6556 4.341806 CAGTTGTAGATGATCTCTCCTGCT 59.658 45.833 0.00 0.00 35.28 4.24
2282 6557 4.099266 ACAGTTGTAGATGATCTCTCCTGC 59.901 45.833 0.00 0.00 35.28 4.85
2283 6558 5.359292 TGACAGTTGTAGATGATCTCTCCTG 59.641 44.000 0.00 4.22 35.28 3.86
2284 6559 5.514169 TGACAGTTGTAGATGATCTCTCCT 58.486 41.667 0.00 0.00 35.28 3.69
2285 6560 5.221224 CCTGACAGTTGTAGATGATCTCTCC 60.221 48.000 0.00 0.00 35.28 3.71
2286 6561 5.221224 CCCTGACAGTTGTAGATGATCTCTC 60.221 48.000 0.00 0.00 35.28 3.20
2287 6562 4.648762 CCCTGACAGTTGTAGATGATCTCT 59.351 45.833 0.00 0.00 38.06 3.10
2288 6563 4.739137 GCCCTGACAGTTGTAGATGATCTC 60.739 50.000 0.00 0.00 0.00 2.75
2289 6564 3.133721 GCCCTGACAGTTGTAGATGATCT 59.866 47.826 0.00 0.00 0.00 2.75
2290 6565 3.462021 GCCCTGACAGTTGTAGATGATC 58.538 50.000 0.93 0.00 0.00 2.92
2291 6566 3.550437 GCCCTGACAGTTGTAGATGAT 57.450 47.619 0.93 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.