Multiple sequence alignment - TraesCS5B01G348700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G348700 chr5B 100.000 6306 0 0 1 6306 530228479 530234784 0.000000e+00 11646.0
1 TraesCS5B01G348700 chr5B 87.885 974 90 12 1 973 530155224 530156170 0.000000e+00 1120.0
2 TraesCS5B01G348700 chr5B 86.765 136 14 3 4161 4296 516616956 516616825 1.420000e-31 148.0
3 TraesCS5B01G348700 chr5B 80.769 104 7 8 1956 2048 31701003 31701104 1.130000e-07 69.4
4 TraesCS5B01G348700 chr5A 95.140 3539 131 24 2479 5984 550643552 550647082 0.000000e+00 5544.0
5 TraesCS5B01G348700 chr5A 94.015 1721 64 16 770 2479 550641826 550643518 0.000000e+00 2571.0
6 TraesCS5B01G348700 chr5A 84.431 501 66 9 270 768 550637812 550638302 3.420000e-132 483.0
7 TraesCS5B01G348700 chr5D 97.144 2276 55 6 2479 4748 436189118 436191389 0.000000e+00 3834.0
8 TraesCS5B01G348700 chr5D 94.940 2154 79 16 333 2479 436186954 436189084 0.000000e+00 3347.0
9 TraesCS5B01G348700 chr5D 91.090 1257 63 24 4744 5984 436191494 436192717 0.000000e+00 1655.0
10 TraesCS5B01G348700 chr5D 93.030 330 21 2 1 328 436186244 436186573 1.230000e-131 481.0
11 TraesCS5B01G348700 chr5D 78.859 298 58 3 3197 3493 505116148 505116441 4.990000e-46 196.0
12 TraesCS5B01G348700 chr2D 81.325 498 73 12 4139 4631 406286341 406285859 2.760000e-103 387.0
13 TraesCS5B01G348700 chr2D 86.765 136 14 3 4161 4296 577747634 577747765 1.420000e-31 148.0
14 TraesCS5B01G348700 chr3D 80.073 547 81 16 4139 4677 347565208 347565734 1.280000e-101 381.0
15 TraesCS5B01G348700 chr7D 75.175 858 171 30 4165 4997 264743985 264744825 3.590000e-97 366.0
16 TraesCS5B01G348700 chr7D 78.586 495 78 14 4187 4677 109120263 109119793 1.030000e-77 302.0
17 TraesCS5B01G348700 chr7B 75.029 857 174 32 4165 4997 245063289 245064129 1.670000e-95 361.0
18 TraesCS5B01G348700 chr6A 84.127 252 28 5 4219 4459 11329718 11329468 3.800000e-57 233.0
19 TraesCS5B01G348700 chr4A 82.648 219 25 7 4252 4459 634348485 634348269 1.400000e-41 182.0
20 TraesCS5B01G348700 chr7A 75.181 415 80 19 2543 2947 288878642 288879043 2.340000e-39 174.0
21 TraesCS5B01G348700 chr3B 86.765 136 14 3 4161 4296 28838039 28837908 1.420000e-31 148.0
22 TraesCS5B01G348700 chr3B 81.416 113 8 8 1956 2057 3695097 3694987 5.240000e-11 80.5
23 TraesCS5B01G348700 chr2A 86.029 136 15 3 4161 4296 56599530 56599399 6.590000e-30 143.0
24 TraesCS5B01G348700 chr1D 81.818 121 9 8 1948 2057 277135639 277135521 8.710000e-14 89.8
25 TraesCS5B01G348700 chr1B 79.825 114 8 10 1956 2057 121033606 121033716 1.130000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G348700 chr5B 530228479 530234784 6305 False 11646.00 11646 100.000000 1 6306 1 chr5B.!!$F3 6305
1 TraesCS5B01G348700 chr5B 530155224 530156170 946 False 1120.00 1120 87.885000 1 973 1 chr5B.!!$F2 972
2 TraesCS5B01G348700 chr5A 550637812 550647082 9270 False 2866.00 5544 91.195333 270 5984 3 chr5A.!!$F1 5714
3 TraesCS5B01G348700 chr5D 436186244 436192717 6473 False 2329.25 3834 94.051000 1 5984 4 chr5D.!!$F2 5983
4 TraesCS5B01G348700 chr3D 347565208 347565734 526 False 381.00 381 80.073000 4139 4677 1 chr3D.!!$F1 538
5 TraesCS5B01G348700 chr7D 264743985 264744825 840 False 366.00 366 75.175000 4165 4997 1 chr7D.!!$F1 832
6 TraesCS5B01G348700 chr7B 245063289 245064129 840 False 361.00 361 75.029000 4165 4997 1 chr7B.!!$F1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 844 0.687920 TACTCCCATTTGTGTCGCCA 59.312 50.000 0.00 0.00 0.00 5.69 F
1111 5018 1.117749 CCTCTCCATCGCCATCTCCA 61.118 60.000 0.00 0.00 0.00 3.86 F
1551 5463 0.822164 ATTGATGAAAGCAGCAGGCC 59.178 50.000 0.00 0.00 46.50 5.19 F
2923 6873 1.070134 ACTTGAAGCGTGTCTTGCCTA 59.930 47.619 0.00 0.00 34.56 3.93 F
3490 7441 0.449388 GCCTATGTTGTGCACTCTGC 59.551 55.000 19.41 7.29 45.29 4.26 F
3528 7479 0.874390 TCATTGCCTTGCGTTGACTC 59.126 50.000 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 5357 1.153086 GGAGCCGGTGCATTCAGAT 60.153 57.895 1.90 0.0 41.13 2.90 R
2089 6002 1.233019 CAACACTCAGAAGGGCACAG 58.767 55.000 0.00 0.0 0.00 3.66 R
3170 7120 1.202568 TGAAGCGGTGCTCCATCATAG 60.203 52.381 5.52 0.0 38.25 2.23 R
3894 7846 1.016130 CGAAGAGCCTGCAACACGAT 61.016 55.000 0.00 0.0 0.00 3.73 R
5038 9115 0.177141 CCTTCCTTATTCCCGTGCGA 59.823 55.000 0.00 0.0 0.00 5.10 R
5386 9463 1.280457 GACTCTGGAGGGGTCAATGT 58.720 55.000 2.58 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 39 3.735720 TCATTGACATGACCCCATCAA 57.264 42.857 0.00 0.00 41.93 2.57
36 40 4.044946 TCATTGACATGACCCCATCAAA 57.955 40.909 0.00 0.00 41.93 2.69
71 75 5.762179 TCATCCATGTTTCTAGTGACCTT 57.238 39.130 0.00 0.00 0.00 3.50
93 97 7.569858 ACCTTATAGTAAGGGGTTTATGTGCTA 59.430 37.037 17.48 0.00 41.71 3.49
147 151 4.098055 AGTTGTCGTAGTAGATGTGCTG 57.902 45.455 0.00 0.00 0.00 4.41
181 185 3.093057 TGGTTGCACAACTAGTTTTGGT 58.907 40.909 20.41 7.46 40.94 3.67
217 221 2.030457 GTGGCTCATTTCGAACGGTATG 59.970 50.000 0.00 0.00 0.00 2.39
220 224 3.126343 GGCTCATTTCGAACGGTATGTTT 59.874 43.478 0.00 0.00 42.09 2.83
228 232 5.738118 TCGAACGGTATGTTTTCAACTTT 57.262 34.783 0.00 0.00 42.09 2.66
273 277 4.256110 GGAGCCCCTTGAATCAAAATTTG 58.744 43.478 0.00 0.00 0.00 2.32
362 742 4.199310 CAACTTGTTTTCTCTCACTCCCA 58.801 43.478 0.00 0.00 0.00 4.37
384 764 5.011125 CCATTCCTATTGTCGATACTCACCT 59.989 44.000 0.00 0.00 0.00 4.00
385 765 6.208797 CCATTCCTATTGTCGATACTCACCTA 59.791 42.308 0.00 0.00 0.00 3.08
386 766 6.630444 TTCCTATTGTCGATACTCACCTAC 57.370 41.667 0.00 0.00 0.00 3.18
387 767 5.938279 TCCTATTGTCGATACTCACCTACT 58.062 41.667 0.00 0.00 0.00 2.57
388 768 5.996513 TCCTATTGTCGATACTCACCTACTC 59.003 44.000 0.00 0.00 0.00 2.59
389 769 5.763698 CCTATTGTCGATACTCACCTACTCA 59.236 44.000 0.00 0.00 0.00 3.41
390 770 4.959596 TTGTCGATACTCACCTACTCAC 57.040 45.455 0.00 0.00 0.00 3.51
391 771 3.276857 TGTCGATACTCACCTACTCACC 58.723 50.000 0.00 0.00 0.00 4.02
398 778 2.110188 ACTCACCTACTCACCTCCTCAA 59.890 50.000 0.00 0.00 0.00 3.02
432 812 3.095347 GCCTCGACCACCCATCTCC 62.095 68.421 0.00 0.00 0.00 3.71
464 844 0.687920 TACTCCCATTTGTGTCGCCA 59.312 50.000 0.00 0.00 0.00 5.69
473 853 3.859411 TTTGTGTCGCCACTTTCTTTT 57.141 38.095 0.00 0.00 42.34 2.27
512 892 1.153823 CTTACACCTCACGCCCTCG 60.154 63.158 0.00 0.00 42.43 4.63
639 1020 8.554528 CAACATATCAACTCGAAGCAGAATTAT 58.445 33.333 0.00 0.00 0.00 1.28
648 1029 6.094739 TCGAAGCAGAATTATTGAAAGTCG 57.905 37.500 0.00 0.00 0.00 4.18
702 1083 8.699749 GTGCATTTTCTTTTTGTGGTACTATTC 58.300 33.333 0.00 0.00 0.00 1.75
768 1149 3.340928 CATTGCATCTCCACTCACAAGA 58.659 45.455 0.00 0.00 0.00 3.02
796 4698 5.277442 GGCCACGTTTAATAAGCGCTTTATA 60.277 40.000 30.13 18.26 31.68 0.98
797 4699 6.368213 GCCACGTTTAATAAGCGCTTTATAT 58.632 36.000 30.13 13.41 31.68 0.86
798 4700 6.854381 GCCACGTTTAATAAGCGCTTTATATT 59.146 34.615 30.13 22.89 31.68 1.28
1111 5018 1.117749 CCTCTCCATCGCCATCTCCA 61.118 60.000 0.00 0.00 0.00 3.86
1243 5150 5.308927 CAGTTCGATTCGATGTCTTGTTTC 58.691 41.667 9.96 0.00 35.23 2.78
1263 5170 3.903932 CTCTCTGTGCGCGAGTGCA 62.904 63.158 12.10 7.28 43.95 4.57
1447 5357 3.414269 GTTTGATCCGTGGAGGGTTTAA 58.586 45.455 0.00 0.00 41.52 1.52
1551 5463 0.822164 ATTGATGAAAGCAGCAGGCC 59.178 50.000 0.00 0.00 46.50 5.19
1744 5656 5.049167 GTGTGGATGATGAATGTCTCTCTC 58.951 45.833 0.00 0.00 0.00 3.20
1769 5681 5.475564 TGTGTGTATCAGTGCTTGTAGAGTA 59.524 40.000 0.00 0.00 0.00 2.59
1899 5811 7.141363 GCAACCAGATCGATATTTGCTTATTT 58.859 34.615 17.85 0.00 37.08 1.40
1941 5853 1.194781 GCAGAGAACAGGGGTGAGGA 61.195 60.000 0.00 0.00 0.00 3.71
2080 5993 9.547753 TCTCCTTCAAATATTTGCAGTATCTAC 57.452 33.333 21.15 0.00 38.05 2.59
2108 6021 1.202687 TCTGTGCCCTTCTGAGTGTTG 60.203 52.381 0.00 0.00 0.00 3.33
2198 6112 5.529800 TGTTGGGCTAGAACTACACTTTTTC 59.470 40.000 0.00 0.00 0.00 2.29
2250 6164 4.711355 AGCATGTGGTATTTATTTGGCAGT 59.289 37.500 0.00 0.00 0.00 4.40
2251 6165 5.187576 AGCATGTGGTATTTATTTGGCAGTT 59.812 36.000 0.00 0.00 0.00 3.16
2252 6166 5.874261 GCATGTGGTATTTATTTGGCAGTTT 59.126 36.000 0.00 0.00 0.00 2.66
2253 6167 6.371271 GCATGTGGTATTTATTTGGCAGTTTT 59.629 34.615 0.00 0.00 0.00 2.43
2310 6224 8.096414 CCATTTCCATTAAAGAAATCACCAACT 58.904 33.333 11.81 0.00 40.98 3.16
2329 6243 7.379529 CACCAACTTAGTTCATCATTCAACAAC 59.620 37.037 0.00 0.00 0.00 3.32
2331 6245 7.920151 CCAACTTAGTTCATCATTCAACAACAA 59.080 33.333 0.00 0.00 0.00 2.83
2332 6246 8.745837 CAACTTAGTTCATCATTCAACAACAAC 58.254 33.333 0.00 0.00 0.00 3.32
2373 6289 5.308014 TCTATTTGCCAGTATGCTATGTGG 58.692 41.667 0.00 0.00 31.97 4.17
2659 6609 8.579850 AAGATTCAAGGTATGCAATTAGTGAA 57.420 30.769 0.00 0.00 0.00 3.18
2709 6659 9.483916 TCTTCTATGACTGTTCGATTGTTTAAA 57.516 29.630 0.00 0.00 0.00 1.52
2718 6668 7.033530 TGTTCGATTGTTTAAAGTGAACCAT 57.966 32.000 11.93 0.00 34.78 3.55
2923 6873 1.070134 ACTTGAAGCGTGTCTTGCCTA 59.930 47.619 0.00 0.00 34.56 3.93
3170 7120 1.594331 GGAATATCCGGCACCAAGAC 58.406 55.000 0.00 0.00 0.00 3.01
3233 7183 1.142870 TCCTGGCCTTTATTGATCGGG 59.857 52.381 3.32 0.00 0.00 5.14
3284 7235 1.001633 GTTGAAGGCGGTGTCTCCTTA 59.998 52.381 0.00 0.00 42.37 2.69
3380 7331 1.596477 GCGATGAGGACATGAGGGC 60.596 63.158 0.00 0.00 36.82 5.19
3490 7441 0.449388 GCCTATGTTGTGCACTCTGC 59.551 55.000 19.41 7.29 45.29 4.26
3500 7451 3.475575 TGTGCACTCTGCTTGTTGATTA 58.524 40.909 19.41 0.00 45.31 1.75
3505 7456 6.421801 GTGCACTCTGCTTGTTGATTATTTTT 59.578 34.615 10.32 0.00 45.31 1.94
3511 7462 7.153315 TCTGCTTGTTGATTATTTTTGCATCA 58.847 30.769 0.00 0.00 0.00 3.07
3528 7479 0.874390 TCATTGCCTTGCGTTGACTC 59.126 50.000 0.00 0.00 0.00 3.36
3542 7493 5.123186 TGCGTTGACTCTAATAACAAATGGG 59.877 40.000 0.00 0.00 0.00 4.00
3543 7494 5.123344 GCGTTGACTCTAATAACAAATGGGT 59.877 40.000 0.00 0.00 0.00 4.51
3829 7781 6.375455 TCTCTTTTAGCTCATTTTGTGGATCC 59.625 38.462 4.20 4.20 0.00 3.36
3831 7783 2.496899 AGCTCATTTTGTGGATCCGT 57.503 45.000 7.39 0.00 0.00 4.69
3941 7893 8.270080 TGACTAAATATGACTATAGGCTCTCG 57.730 38.462 7.23 0.00 0.00 4.04
4029 7981 4.588899 TGATCCAATACAAGAGTTGGGTG 58.411 43.478 4.49 0.00 43.96 4.61
4033 7985 5.450453 TCCAATACAAGAGTTGGGTGAAAA 58.550 37.500 4.49 0.00 43.96 2.29
4063 8015 1.633561 CGAATGCGAGAGAAGAGCAA 58.366 50.000 0.00 0.00 44.51 3.91
4732 8700 8.655901 TGTATATCTCTGTTGGCCATTTGTATA 58.344 33.333 6.09 1.31 0.00 1.47
4767 8844 7.837863 TCTTAGTACATTTCCGAATTCTGACT 58.162 34.615 3.52 0.00 0.00 3.41
4938 9015 2.092598 GGAAATCCCATGGAAGCCAT 57.907 50.000 15.22 0.00 46.37 4.40
4993 9070 3.254892 TGCGTGTATATGCGAAAAGACA 58.745 40.909 0.00 0.00 41.84 3.41
5123 9200 3.196469 GGATGGATCTGACACTGAAGACA 59.804 47.826 0.00 0.00 0.00 3.41
5166 9243 6.142818 AGAAGAGATGATTACTGAAGACGG 57.857 41.667 0.00 0.00 0.00 4.79
5229 9306 3.006967 ACTGCGACAGAAGAGGTAATTGT 59.993 43.478 12.77 0.00 35.18 2.71
5251 9328 2.507324 GAAGCTGAGGCCGACGAC 60.507 66.667 0.00 0.00 39.73 4.34
5337 9414 6.292150 GCTATACAGCTTGGAGGAATTAGTT 58.708 40.000 0.00 0.00 44.93 2.24
5338 9415 6.203723 GCTATACAGCTTGGAGGAATTAGTTG 59.796 42.308 0.00 0.00 44.93 3.16
5386 9463 5.159273 TGTATGTGGTAGAAACTGATGCA 57.841 39.130 0.00 0.00 0.00 3.96
5482 9559 1.008938 AGCTGTACATCCTCTCCCCTT 59.991 52.381 0.00 0.00 0.00 3.95
5527 9616 4.431661 CCTCAATTTGGCAGTTCTCTTC 57.568 45.455 0.00 0.00 0.00 2.87
5528 9617 3.120060 CCTCAATTTGGCAGTTCTCTTCG 60.120 47.826 0.00 0.00 0.00 3.79
5546 9635 2.756829 TCGGAGTTCGTAACATTTGCA 58.243 42.857 0.00 0.00 40.32 4.08
5554 9643 2.032722 TCGTAACATTTGCACCGTTGTC 60.033 45.455 5.13 0.00 0.00 3.18
5587 9676 3.185594 CGGAATGTGTTCGTTCTGCTTTA 59.814 43.478 0.00 0.00 38.56 1.85
5593 9682 5.985781 TGTGTTCGTTCTGCTTTAGAAATC 58.014 37.500 0.00 0.00 46.48 2.17
5616 9705 0.693049 GTCCTCTTCTCCTGGCCAAA 59.307 55.000 7.01 0.00 0.00 3.28
5623 9712 0.478072 TCTCCTGGCCAAAGCTTTCA 59.522 50.000 9.23 3.73 39.73 2.69
5632 9721 3.193267 GGCCAAAGCTTTCATACATGTGA 59.807 43.478 9.23 0.00 39.73 3.58
5664 9753 7.442364 TCAATCTCTTGTGTTGTTCCTCTAAAG 59.558 37.037 0.00 0.00 33.87 1.85
5669 9759 6.986817 TCTTGTGTTGTTCCTCTAAAGAGAAG 59.013 38.462 8.60 1.64 44.74 2.85
5692 9817 7.891183 AGAATCTCATGTGTTGTTACAGTAC 57.109 36.000 0.00 0.00 34.24 2.73
5727 9860 5.483811 TGATACAGTGCCGAATTGTTCTTA 58.516 37.500 0.00 0.00 30.29 2.10
5728 9861 5.935206 TGATACAGTGCCGAATTGTTCTTAA 59.065 36.000 0.00 0.00 30.29 1.85
5729 9862 4.483476 ACAGTGCCGAATTGTTCTTAAC 57.517 40.909 0.00 0.00 0.00 2.01
5730 9863 4.134563 ACAGTGCCGAATTGTTCTTAACT 58.865 39.130 0.00 0.00 0.00 2.24
5731 9864 4.578928 ACAGTGCCGAATTGTTCTTAACTT 59.421 37.500 0.00 0.00 0.00 2.66
5732 9865 5.761234 ACAGTGCCGAATTGTTCTTAACTTA 59.239 36.000 0.00 0.00 0.00 2.24
5733 9866 6.430000 ACAGTGCCGAATTGTTCTTAACTTAT 59.570 34.615 0.00 0.00 0.00 1.73
5734 9867 6.961554 CAGTGCCGAATTGTTCTTAACTTATC 59.038 38.462 0.00 0.00 0.00 1.75
5735 9868 6.653320 AGTGCCGAATTGTTCTTAACTTATCA 59.347 34.615 0.00 0.00 0.00 2.15
5736 9869 7.336931 AGTGCCGAATTGTTCTTAACTTATCAT 59.663 33.333 0.00 0.00 0.00 2.45
5737 9870 7.429340 GTGCCGAATTGTTCTTAACTTATCATG 59.571 37.037 0.00 0.00 0.00 3.07
5738 9871 6.912591 GCCGAATTGTTCTTAACTTATCATGG 59.087 38.462 0.00 0.00 0.00 3.66
5739 9872 7.415206 GCCGAATTGTTCTTAACTTATCATGGT 60.415 37.037 0.00 0.00 0.00 3.55
5740 9873 7.910162 CCGAATTGTTCTTAACTTATCATGGTG 59.090 37.037 0.00 0.00 0.00 4.17
5741 9874 7.429340 CGAATTGTTCTTAACTTATCATGGTGC 59.571 37.037 0.00 0.00 0.00 5.01
5742 9875 7.701539 ATTGTTCTTAACTTATCATGGTGCA 57.298 32.000 0.00 0.00 0.00 4.57
5743 9876 6.741992 TGTTCTTAACTTATCATGGTGCAG 57.258 37.500 0.00 0.00 0.00 4.41
5744 9877 6.237901 TGTTCTTAACTTATCATGGTGCAGT 58.762 36.000 0.00 0.00 0.00 4.40
5745 9878 6.714810 TGTTCTTAACTTATCATGGTGCAGTT 59.285 34.615 9.60 9.60 0.00 3.16
5746 9879 6.985188 TCTTAACTTATCATGGTGCAGTTC 57.015 37.500 8.29 0.00 0.00 3.01
5747 9880 6.472016 TCTTAACTTATCATGGTGCAGTTCA 58.528 36.000 8.29 0.00 0.00 3.18
5748 9881 6.939730 TCTTAACTTATCATGGTGCAGTTCAA 59.060 34.615 8.29 3.26 0.00 2.69
5749 9882 5.633830 AACTTATCATGGTGCAGTTCAAG 57.366 39.130 0.00 0.00 0.00 3.02
5750 9883 3.441572 ACTTATCATGGTGCAGTTCAAGC 59.558 43.478 0.00 0.00 0.00 4.01
5751 9884 2.211250 ATCATGGTGCAGTTCAAGCT 57.789 45.000 0.00 0.00 0.00 3.74
5752 9885 1.985473 TCATGGTGCAGTTCAAGCTT 58.015 45.000 0.00 0.00 0.00 3.74
5753 9886 2.309613 TCATGGTGCAGTTCAAGCTTT 58.690 42.857 0.00 0.00 0.00 3.51
5754 9887 3.485394 TCATGGTGCAGTTCAAGCTTTA 58.515 40.909 0.00 0.00 0.00 1.85
5755 9888 3.253188 TCATGGTGCAGTTCAAGCTTTAC 59.747 43.478 0.00 0.00 0.00 2.01
5756 9889 2.930950 TGGTGCAGTTCAAGCTTTACT 58.069 42.857 0.00 0.00 0.00 2.24
5757 9890 2.618241 TGGTGCAGTTCAAGCTTTACTG 59.382 45.455 24.43 24.43 41.64 2.74
5758 9891 2.030805 GGTGCAGTTCAAGCTTTACTGG 60.031 50.000 27.36 16.01 39.66 4.00
5759 9892 2.618709 GTGCAGTTCAAGCTTTACTGGT 59.381 45.455 27.36 2.95 39.66 4.00
5760 9893 2.878406 TGCAGTTCAAGCTTTACTGGTC 59.122 45.455 27.36 17.80 39.66 4.02
5761 9894 3.142174 GCAGTTCAAGCTTTACTGGTCT 58.858 45.455 27.36 7.52 39.66 3.85
5762 9895 3.565902 GCAGTTCAAGCTTTACTGGTCTT 59.434 43.478 27.36 1.82 39.66 3.01
5776 9909 7.900782 TTACTGGTCTTTGCACTATACTTTC 57.099 36.000 0.00 0.00 0.00 2.62
5804 9937 2.268762 TGCTAAGGTGTGCATGTTCA 57.731 45.000 0.00 0.00 33.94 3.18
5842 9979 6.581919 TGAGTAAACATTCATTCGTGCATTTG 59.418 34.615 0.00 0.00 0.00 2.32
5860 9997 5.119588 GCATTTGTACTACTGTAGCGTTTCA 59.880 40.000 14.55 4.74 0.00 2.69
5886 10024 4.337763 GCATTGTTTTCTACTGCATCGAG 58.662 43.478 0.00 0.00 33.13 4.04
5931 10069 4.591072 ACAAGCCCTTGCCTTTTTAATGTA 59.409 37.500 7.88 0.00 44.03 2.29
5977 10115 9.282247 GAATCACAAAGCAGTATTGAACTATTG 57.718 33.333 0.00 0.00 35.76 1.90
5980 10118 8.629158 TCACAAAGCAGTATTGAACTATTGTTT 58.371 29.630 0.00 0.00 36.94 2.83
5985 10123 9.899226 AAGCAGTATTGAACTATTGTTTTCTTC 57.101 29.630 0.00 0.00 35.76 2.87
5986 10124 9.066892 AGCAGTATTGAACTATTGTTTTCTTCA 57.933 29.630 0.00 0.00 35.76 3.02
5987 10125 9.677567 GCAGTATTGAACTATTGTTTTCTTCAA 57.322 29.630 0.00 0.00 35.76 2.69
6006 10144 9.773328 TTCTTCAATAAAAATAGAATGCGAGTG 57.227 29.630 0.00 0.00 0.00 3.51
6007 10145 7.910162 TCTTCAATAAAAATAGAATGCGAGTGC 59.090 33.333 0.00 0.00 43.20 4.40
6008 10146 7.320443 TCAATAAAAATAGAATGCGAGTGCT 57.680 32.000 0.00 0.00 43.34 4.40
6009 10147 7.188834 TCAATAAAAATAGAATGCGAGTGCTG 58.811 34.615 0.00 0.00 43.34 4.41
6010 10148 6.925610 ATAAAAATAGAATGCGAGTGCTGA 57.074 33.333 0.00 0.00 43.34 4.26
6011 10149 5.627499 AAAAATAGAATGCGAGTGCTGAA 57.373 34.783 0.00 0.00 43.34 3.02
6012 10150 5.627499 AAAATAGAATGCGAGTGCTGAAA 57.373 34.783 0.00 0.00 43.34 2.69
6013 10151 4.606457 AATAGAATGCGAGTGCTGAAAC 57.394 40.909 0.00 0.00 43.34 2.78
6014 10152 1.882912 AGAATGCGAGTGCTGAAACA 58.117 45.000 0.00 0.00 43.34 2.83
6015 10153 2.430465 AGAATGCGAGTGCTGAAACAT 58.570 42.857 0.00 0.00 43.34 2.71
6016 10154 2.816087 AGAATGCGAGTGCTGAAACATT 59.184 40.909 0.00 0.00 43.34 2.71
6017 10155 3.254166 AGAATGCGAGTGCTGAAACATTT 59.746 39.130 0.00 0.00 43.34 2.32
6018 10156 2.686558 TGCGAGTGCTGAAACATTTC 57.313 45.000 0.00 0.00 43.34 2.17
6019 10157 2.221169 TGCGAGTGCTGAAACATTTCT 58.779 42.857 5.97 0.00 43.34 2.52
6020 10158 3.398406 TGCGAGTGCTGAAACATTTCTA 58.602 40.909 5.97 0.00 43.34 2.10
6021 10159 3.186409 TGCGAGTGCTGAAACATTTCTAC 59.814 43.478 5.97 3.32 43.34 2.59
6022 10160 3.186409 GCGAGTGCTGAAACATTTCTACA 59.814 43.478 5.97 1.76 38.02 2.74
6023 10161 4.667668 GCGAGTGCTGAAACATTTCTACAG 60.668 45.833 5.97 0.00 38.02 2.74
6024 10162 4.686091 CGAGTGCTGAAACATTTCTACAGA 59.314 41.667 5.97 0.00 38.02 3.41
6025 10163 5.177511 CGAGTGCTGAAACATTTCTACAGAA 59.822 40.000 5.97 0.00 38.02 3.02
6026 10164 6.551385 AGTGCTGAAACATTTCTACAGAAG 57.449 37.500 5.97 0.00 38.02 2.85
6027 10165 5.049129 AGTGCTGAAACATTTCTACAGAAGC 60.049 40.000 5.97 5.75 38.02 3.86
6028 10166 4.083855 TGCTGAAACATTTCTACAGAAGCG 60.084 41.667 5.97 0.00 38.02 4.68
6029 10167 4.670221 GCTGAAACATTTCTACAGAAGCGG 60.670 45.833 5.97 0.00 38.02 5.52
6030 10168 4.637276 TGAAACATTTCTACAGAAGCGGA 58.363 39.130 5.97 0.00 38.02 5.54
6031 10169 5.060506 TGAAACATTTCTACAGAAGCGGAA 58.939 37.500 5.97 0.00 38.02 4.30
6032 10170 5.179368 TGAAACATTTCTACAGAAGCGGAAG 59.821 40.000 5.97 0.00 38.02 3.46
6033 10171 4.273148 ACATTTCTACAGAAGCGGAAGT 57.727 40.909 0.00 0.00 35.21 3.01
6034 10172 4.642429 ACATTTCTACAGAAGCGGAAGTT 58.358 39.130 0.00 0.00 35.21 2.66
6035 10173 5.063880 ACATTTCTACAGAAGCGGAAGTTT 58.936 37.500 0.00 0.00 37.19 2.66
6036 10174 5.049405 ACATTTCTACAGAAGCGGAAGTTTG 60.049 40.000 0.00 0.00 33.53 2.93
6037 10175 3.040147 TCTACAGAAGCGGAAGTTTGG 57.960 47.619 0.00 0.00 33.53 3.28
6038 10176 2.631062 TCTACAGAAGCGGAAGTTTGGA 59.369 45.455 0.00 0.00 33.53 3.53
6039 10177 2.568623 ACAGAAGCGGAAGTTTGGAT 57.431 45.000 0.00 0.00 33.53 3.41
6040 10178 3.695830 ACAGAAGCGGAAGTTTGGATA 57.304 42.857 0.00 0.00 33.53 2.59
6041 10179 4.222124 ACAGAAGCGGAAGTTTGGATAT 57.778 40.909 0.00 0.00 33.53 1.63
6042 10180 5.353394 ACAGAAGCGGAAGTTTGGATATA 57.647 39.130 0.00 0.00 33.53 0.86
6043 10181 5.930135 ACAGAAGCGGAAGTTTGGATATAT 58.070 37.500 0.00 0.00 33.53 0.86
6044 10182 5.760253 ACAGAAGCGGAAGTTTGGATATATG 59.240 40.000 0.00 0.00 33.53 1.78
6045 10183 4.757149 AGAAGCGGAAGTTTGGATATATGC 59.243 41.667 0.00 0.00 33.53 3.14
6046 10184 4.357918 AGCGGAAGTTTGGATATATGCT 57.642 40.909 5.77 0.00 0.00 3.79
6047 10185 4.067896 AGCGGAAGTTTGGATATATGCTG 58.932 43.478 5.77 0.00 0.00 4.41
6048 10186 3.365364 GCGGAAGTTTGGATATATGCTGC 60.365 47.826 5.77 0.00 0.00 5.25
6049 10187 3.814842 CGGAAGTTTGGATATATGCTGCA 59.185 43.478 4.13 4.13 0.00 4.41
6050 10188 4.275689 CGGAAGTTTGGATATATGCTGCAA 59.724 41.667 6.36 0.00 0.00 4.08
6051 10189 5.048504 CGGAAGTTTGGATATATGCTGCAAT 60.049 40.000 6.36 4.55 0.00 3.56
6052 10190 6.149308 CGGAAGTTTGGATATATGCTGCAATA 59.851 38.462 6.36 6.70 0.00 1.90
6053 10191 7.148188 CGGAAGTTTGGATATATGCTGCAATAT 60.148 37.037 6.36 11.13 0.00 1.28
6054 10192 9.177608 GGAAGTTTGGATATATGCTGCAATATA 57.822 33.333 6.36 9.84 31.28 0.86
6061 10199 9.768662 TGGATATATGCTGCAATATATACTGTG 57.231 33.333 21.55 0.00 37.28 3.66
6062 10200 9.987272 GGATATATGCTGCAATATATACTGTGA 57.013 33.333 6.36 0.00 36.35 3.58
6064 10202 9.993454 ATATATGCTGCAATATATACTGTGAGG 57.007 33.333 6.36 0.00 35.07 3.86
6065 10203 5.551305 TGCTGCAATATATACTGTGAGGT 57.449 39.130 0.00 0.00 0.00 3.85
6066 10204 5.299949 TGCTGCAATATATACTGTGAGGTG 58.700 41.667 0.00 0.00 0.00 4.00
6067 10205 5.163311 TGCTGCAATATATACTGTGAGGTGT 60.163 40.000 0.00 0.00 0.00 4.16
6068 10206 5.178252 GCTGCAATATATACTGTGAGGTGTG 59.822 44.000 0.00 0.00 0.00 3.82
6069 10207 5.056480 TGCAATATATACTGTGAGGTGTGC 58.944 41.667 0.00 0.00 0.00 4.57
6070 10208 5.163311 TGCAATATATACTGTGAGGTGTGCT 60.163 40.000 0.00 0.00 0.00 4.40
6071 10209 5.178252 GCAATATATACTGTGAGGTGTGCTG 59.822 44.000 0.00 0.00 0.00 4.41
6072 10210 3.827008 ATATACTGTGAGGTGTGCTGG 57.173 47.619 0.00 0.00 0.00 4.85
6073 10211 0.615331 ATACTGTGAGGTGTGCTGGG 59.385 55.000 0.00 0.00 0.00 4.45
6074 10212 0.762842 TACTGTGAGGTGTGCTGGGT 60.763 55.000 0.00 0.00 0.00 4.51
6075 10213 1.598962 CTGTGAGGTGTGCTGGGTG 60.599 63.158 0.00 0.00 0.00 4.61
6076 10214 2.329539 CTGTGAGGTGTGCTGGGTGT 62.330 60.000 0.00 0.00 0.00 4.16
6077 10215 1.051556 TGTGAGGTGTGCTGGGTGTA 61.052 55.000 0.00 0.00 0.00 2.90
6078 10216 0.324943 GTGAGGTGTGCTGGGTGTAT 59.675 55.000 0.00 0.00 0.00 2.29
6079 10217 1.553248 GTGAGGTGTGCTGGGTGTATA 59.447 52.381 0.00 0.00 0.00 1.47
6080 10218 2.170607 GTGAGGTGTGCTGGGTGTATAT 59.829 50.000 0.00 0.00 0.00 0.86
6081 10219 2.170397 TGAGGTGTGCTGGGTGTATATG 59.830 50.000 0.00 0.00 0.00 1.78
6082 10220 1.134098 AGGTGTGCTGGGTGTATATGC 60.134 52.381 0.00 0.00 0.00 3.14
6083 10221 1.134098 GGTGTGCTGGGTGTATATGCT 60.134 52.381 0.00 0.00 0.00 3.79
6084 10222 1.942657 GTGTGCTGGGTGTATATGCTG 59.057 52.381 0.00 0.00 0.00 4.41
6085 10223 1.559219 TGTGCTGGGTGTATATGCTGT 59.441 47.619 0.00 0.00 0.00 4.40
6086 10224 2.213499 GTGCTGGGTGTATATGCTGTC 58.787 52.381 0.00 0.00 0.00 3.51
6087 10225 1.836802 TGCTGGGTGTATATGCTGTCA 59.163 47.619 0.00 0.00 0.00 3.58
6088 10226 2.158914 TGCTGGGTGTATATGCTGTCAG 60.159 50.000 0.00 0.00 0.00 3.51
6089 10227 2.487934 CTGGGTGTATATGCTGTCAGC 58.512 52.381 18.32 18.32 42.82 4.26
6090 10228 2.103771 CTGGGTGTATATGCTGTCAGCT 59.896 50.000 24.76 13.11 42.97 4.24
6091 10229 2.158914 TGGGTGTATATGCTGTCAGCTG 60.159 50.000 24.76 7.63 42.97 4.24
6092 10230 2.158900 GGGTGTATATGCTGTCAGCTGT 60.159 50.000 24.76 15.77 42.97 4.40
6093 10231 3.126831 GGTGTATATGCTGTCAGCTGTC 58.873 50.000 24.76 9.06 42.97 3.51
6094 10232 3.126831 GTGTATATGCTGTCAGCTGTCC 58.873 50.000 24.76 6.40 42.97 4.02
6095 10233 2.765699 TGTATATGCTGTCAGCTGTCCA 59.234 45.455 24.76 10.86 42.97 4.02
6096 10234 2.616634 ATATGCTGTCAGCTGTCCAG 57.383 50.000 24.76 23.26 42.97 3.86
6109 10247 2.758009 CTGTCCAGCCAAAAACAATGG 58.242 47.619 0.00 0.00 41.08 3.16
6110 10248 2.102925 CTGTCCAGCCAAAAACAATGGT 59.897 45.455 0.00 0.00 40.23 3.55
6111 10249 2.503356 TGTCCAGCCAAAAACAATGGTT 59.497 40.909 0.00 0.00 40.23 3.67
6113 10251 4.162320 TGTCCAGCCAAAAACAATGGTTTA 59.838 37.500 0.00 0.00 46.20 2.01
6114 10252 4.749598 GTCCAGCCAAAAACAATGGTTTAG 59.250 41.667 0.00 0.00 46.20 1.85
6115 10253 3.498018 CCAGCCAAAAACAATGGTTTAGC 59.502 43.478 9.79 9.79 46.20 3.09
6116 10254 4.379652 CAGCCAAAAACAATGGTTTAGCT 58.620 39.130 13.41 13.41 46.20 3.32
6117 10255 4.448732 CAGCCAAAAACAATGGTTTAGCTC 59.551 41.667 15.54 0.00 46.20 4.09
6118 10256 4.100808 AGCCAAAAACAATGGTTTAGCTCA 59.899 37.500 13.41 0.00 46.20 4.26
6119 10257 4.448732 GCCAAAAACAATGGTTTAGCTCAG 59.551 41.667 10.35 0.00 46.20 3.35
6120 10258 4.990426 CCAAAAACAATGGTTTAGCTCAGG 59.010 41.667 0.00 0.00 46.20 3.86
6121 10259 3.942130 AAACAATGGTTTAGCTCAGGC 57.058 42.857 0.00 0.00 45.12 4.85
6122 10260 1.453155 ACAATGGTTTAGCTCAGGCG 58.547 50.000 0.00 0.00 44.37 5.52
6123 10261 1.003118 ACAATGGTTTAGCTCAGGCGA 59.997 47.619 0.00 0.00 44.37 5.54
6124 10262 1.667724 CAATGGTTTAGCTCAGGCGAG 59.332 52.381 0.00 2.61 44.37 5.03
6125 10263 1.195115 ATGGTTTAGCTCAGGCGAGA 58.805 50.000 9.91 0.00 42.34 4.04
6126 10264 0.246635 TGGTTTAGCTCAGGCGAGAC 59.753 55.000 9.91 2.81 42.34 3.36
6127 10265 0.246635 GGTTTAGCTCAGGCGAGACA 59.753 55.000 9.91 0.00 42.34 3.41
6128 10266 1.134670 GGTTTAGCTCAGGCGAGACAT 60.135 52.381 9.91 0.00 42.34 3.06
6129 10267 2.100916 GGTTTAGCTCAGGCGAGACATA 59.899 50.000 9.91 0.00 42.34 2.29
6130 10268 3.430374 GGTTTAGCTCAGGCGAGACATAA 60.430 47.826 9.91 3.88 42.34 1.90
6131 10269 4.181578 GTTTAGCTCAGGCGAGACATAAA 58.818 43.478 9.91 8.29 42.34 1.40
6132 10270 4.672587 TTAGCTCAGGCGAGACATAAAT 57.327 40.909 9.91 0.00 42.34 1.40
6133 10271 2.831333 AGCTCAGGCGAGACATAAATG 58.169 47.619 9.91 0.00 42.34 2.32
6134 10272 1.869767 GCTCAGGCGAGACATAAATGG 59.130 52.381 9.91 0.00 42.34 3.16
6135 10273 2.743183 GCTCAGGCGAGACATAAATGGT 60.743 50.000 9.91 0.00 42.34 3.55
6136 10274 3.492656 GCTCAGGCGAGACATAAATGGTA 60.493 47.826 9.91 0.00 42.34 3.25
6137 10275 4.800914 GCTCAGGCGAGACATAAATGGTAT 60.801 45.833 9.91 0.00 42.34 2.73
6138 10276 5.290493 TCAGGCGAGACATAAATGGTATT 57.710 39.130 0.00 0.00 0.00 1.89
6139 10277 5.297547 TCAGGCGAGACATAAATGGTATTC 58.702 41.667 0.00 0.00 0.00 1.75
6140 10278 4.452455 CAGGCGAGACATAAATGGTATTCC 59.548 45.833 0.00 0.00 0.00 3.01
6141 10279 9.777173 CTCAGGCGAGACATAAATGGTATTCCA 62.777 44.444 0.00 0.00 44.25 3.53
6158 10296 2.288961 CCATCTTTGGAGTGCAATGC 57.711 50.000 0.00 0.00 46.92 3.56
6159 10297 1.822990 CCATCTTTGGAGTGCAATGCT 59.177 47.619 7.30 0.00 46.92 3.79
6160 10298 2.416836 CCATCTTTGGAGTGCAATGCTG 60.417 50.000 7.30 2.65 46.92 4.41
6171 10309 3.030209 CAATGCTGCATGTGCTCAC 57.970 52.632 17.00 0.00 42.66 3.51
6172 10310 0.796870 CAATGCTGCATGTGCTCACG 60.797 55.000 17.00 0.00 42.66 4.35
6173 10311 2.537792 AATGCTGCATGTGCTCACGC 62.538 55.000 17.00 0.00 42.66 5.34
6174 10312 3.729698 GCTGCATGTGCTCACGCA 61.730 61.111 9.33 9.33 45.60 5.24
6182 10320 4.735132 TGCTCACGCACCGGCTAC 62.735 66.667 0.00 0.00 42.25 3.58
6183 10321 4.735132 GCTCACGCACCGGCTACA 62.735 66.667 0.00 0.00 38.10 2.74
6184 10322 2.184322 CTCACGCACCGGCTACAT 59.816 61.111 0.00 0.00 38.10 2.29
6185 10323 2.125713 TCACGCACCGGCTACATG 60.126 61.111 0.00 0.00 38.10 3.21
6186 10324 2.434185 CACGCACCGGCTACATGT 60.434 61.111 0.00 2.69 38.10 3.21
6187 10325 2.125673 ACGCACCGGCTACATGTC 60.126 61.111 0.00 0.00 38.10 3.06
6188 10326 2.184322 CGCACCGGCTACATGTCT 59.816 61.111 0.00 0.00 38.10 3.41
6189 10327 1.317431 ACGCACCGGCTACATGTCTA 61.317 55.000 0.00 0.00 38.10 2.59
6190 10328 0.179121 CGCACCGGCTACATGTCTAA 60.179 55.000 0.00 0.00 38.10 2.10
6191 10329 1.737696 CGCACCGGCTACATGTCTAAA 60.738 52.381 0.00 0.00 38.10 1.85
6192 10330 2.561569 GCACCGGCTACATGTCTAAAT 58.438 47.619 0.00 0.00 36.96 1.40
6193 10331 2.287915 GCACCGGCTACATGTCTAAATG 59.712 50.000 0.00 0.00 36.96 2.32
6194 10332 2.872245 CACCGGCTACATGTCTAAATGG 59.128 50.000 0.00 0.65 31.46 3.16
6195 10333 2.769663 ACCGGCTACATGTCTAAATGGA 59.230 45.455 0.00 0.00 31.46 3.41
6196 10334 3.391296 ACCGGCTACATGTCTAAATGGAT 59.609 43.478 0.00 0.00 31.46 3.41
6197 10335 4.141482 ACCGGCTACATGTCTAAATGGATT 60.141 41.667 0.00 0.00 31.46 3.01
6198 10336 4.214119 CCGGCTACATGTCTAAATGGATTG 59.786 45.833 0.00 0.00 31.46 2.67
6199 10337 4.816385 CGGCTACATGTCTAAATGGATTGT 59.184 41.667 0.00 0.00 31.46 2.71
6200 10338 5.989168 CGGCTACATGTCTAAATGGATTGTA 59.011 40.000 0.00 0.00 31.46 2.41
6201 10339 6.650807 CGGCTACATGTCTAAATGGATTGTAT 59.349 38.462 0.00 0.00 31.46 2.29
6202 10340 7.173218 CGGCTACATGTCTAAATGGATTGTATT 59.827 37.037 0.00 0.00 31.46 1.89
6203 10341 8.850156 GGCTACATGTCTAAATGGATTGTATTT 58.150 33.333 0.00 0.00 31.46 1.40
6245 10383 9.411801 CGAAGGATCTCGAATCATTAAAATAGA 57.588 33.333 0.00 0.00 41.44 1.98
6252 10390 9.751542 TCTCGAATCATTAAAATAGAAGAGGAC 57.248 33.333 0.00 0.00 0.00 3.85
6253 10391 8.575565 TCGAATCATTAAAATAGAAGAGGACG 57.424 34.615 0.00 0.00 0.00 4.79
6254 10392 7.652105 TCGAATCATTAAAATAGAAGAGGACGG 59.348 37.037 0.00 0.00 0.00 4.79
6255 10393 7.438459 CGAATCATTAAAATAGAAGAGGACGGT 59.562 37.037 0.00 0.00 0.00 4.83
6256 10394 9.110502 GAATCATTAAAATAGAAGAGGACGGTT 57.889 33.333 0.00 0.00 0.00 4.44
6257 10395 7.843490 TCATTAAAATAGAAGAGGACGGTTG 57.157 36.000 0.00 0.00 0.00 3.77
6258 10396 6.315393 TCATTAAAATAGAAGAGGACGGTTGC 59.685 38.462 0.00 0.00 0.00 4.17
6259 10397 2.693267 AATAGAAGAGGACGGTTGCC 57.307 50.000 0.00 0.00 0.00 4.52
6260 10398 0.831307 ATAGAAGAGGACGGTTGCCC 59.169 55.000 0.00 0.00 0.00 5.36
6274 10412 4.075963 GGTTGCCCGGTTAATATACAGA 57.924 45.455 0.00 0.00 0.00 3.41
6275 10413 4.453751 GGTTGCCCGGTTAATATACAGAA 58.546 43.478 0.00 0.00 0.00 3.02
6276 10414 4.274214 GGTTGCCCGGTTAATATACAGAAC 59.726 45.833 0.00 0.00 0.00 3.01
6277 10415 4.075963 TGCCCGGTTAATATACAGAACC 57.924 45.455 0.00 0.00 39.44 3.62
6278 10416 3.455177 TGCCCGGTTAATATACAGAACCA 59.545 43.478 0.00 0.00 42.36 3.67
6279 10417 4.062991 GCCCGGTTAATATACAGAACCAG 58.937 47.826 0.00 2.38 42.36 4.00
6280 10418 4.202284 GCCCGGTTAATATACAGAACCAGA 60.202 45.833 0.00 0.00 42.36 3.86
6281 10419 5.295152 CCCGGTTAATATACAGAACCAGAC 58.705 45.833 0.00 0.00 42.36 3.51
6282 10420 5.070047 CCCGGTTAATATACAGAACCAGACT 59.930 44.000 0.00 0.00 42.36 3.24
6283 10421 6.266103 CCCGGTTAATATACAGAACCAGACTA 59.734 42.308 0.00 0.00 42.36 2.59
6284 10422 7.201938 CCCGGTTAATATACAGAACCAGACTAA 60.202 40.741 0.00 0.00 42.36 2.24
6285 10423 8.199449 CCGGTTAATATACAGAACCAGACTAAA 58.801 37.037 11.06 0.00 42.36 1.85
6286 10424 9.590451 CGGTTAATATACAGAACCAGACTAAAA 57.410 33.333 11.06 0.00 42.36 1.52
6289 10427 9.590451 TTAATATACAGAACCAGACTAAAACCG 57.410 33.333 0.00 0.00 0.00 4.44
6290 10428 3.832615 ACAGAACCAGACTAAAACCGT 57.167 42.857 0.00 0.00 0.00 4.83
6291 10429 3.725490 ACAGAACCAGACTAAAACCGTC 58.275 45.455 0.00 0.00 0.00 4.79
6292 10430 3.133362 ACAGAACCAGACTAAAACCGTCA 59.867 43.478 0.00 0.00 33.89 4.35
6293 10431 3.493503 CAGAACCAGACTAAAACCGTCAC 59.506 47.826 0.00 0.00 33.89 3.67
6294 10432 3.133362 AGAACCAGACTAAAACCGTCACA 59.867 43.478 0.00 0.00 33.89 3.58
6295 10433 3.547054 ACCAGACTAAAACCGTCACAA 57.453 42.857 0.00 0.00 33.89 3.33
6296 10434 3.200483 ACCAGACTAAAACCGTCACAAC 58.800 45.455 0.00 0.00 33.89 3.32
6297 10435 3.199677 CCAGACTAAAACCGTCACAACA 58.800 45.455 0.00 0.00 33.89 3.33
6298 10436 3.247648 CCAGACTAAAACCGTCACAACAG 59.752 47.826 0.00 0.00 33.89 3.16
6299 10437 2.870411 AGACTAAAACCGTCACAACAGC 59.130 45.455 0.00 0.00 33.89 4.40
6300 10438 1.944709 ACTAAAACCGTCACAACAGCC 59.055 47.619 0.00 0.00 0.00 4.85
6301 10439 1.265905 CTAAAACCGTCACAACAGCCC 59.734 52.381 0.00 0.00 0.00 5.19
6302 10440 0.681564 AAAACCGTCACAACAGCCCA 60.682 50.000 0.00 0.00 0.00 5.36
6303 10441 1.381165 AAACCGTCACAACAGCCCAC 61.381 55.000 0.00 0.00 0.00 4.61
6304 10442 2.203139 CCGTCACAACAGCCCACA 60.203 61.111 0.00 0.00 0.00 4.17
6305 10443 2.542907 CCGTCACAACAGCCCACAC 61.543 63.158 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.822132 AAAAATTTGATGGGGTCATGTCA 57.178 34.783 0.00 0.00 36.54 3.58
71 75 7.307550 TCCTAGCACATAAACCCCTTACTATA 58.692 38.462 0.00 0.00 0.00 1.31
93 97 3.118592 GGCAACTTGTAGATGCTACTCCT 60.119 47.826 8.51 0.00 42.71 3.69
130 134 1.405821 AGGCAGCACATCTACTACGAC 59.594 52.381 0.00 0.00 0.00 4.34
147 151 4.815269 TGTGCAACCACATTTATTAAGGC 58.185 39.130 0.00 0.00 46.51 4.35
181 185 3.635836 TGAGCCACACAAATTGATCACAA 59.364 39.130 0.00 0.00 40.42 3.33
191 195 2.286713 CGTTCGAAATGAGCCACACAAA 60.287 45.455 0.00 0.00 0.00 2.83
228 232 6.070656 CCAGGCTCCCAATTTCATAGAAATA 58.929 40.000 5.50 0.00 0.00 1.40
362 742 7.005296 AGTAGGTGAGTATCGACAATAGGAAT 58.995 38.462 0.00 0.00 38.61 3.01
384 764 5.211973 AGCAATAGATTGAGGAGGTGAGTA 58.788 41.667 6.43 0.00 40.14 2.59
385 765 4.036518 AGCAATAGATTGAGGAGGTGAGT 58.963 43.478 6.43 0.00 40.14 3.41
386 766 4.686191 AGCAATAGATTGAGGAGGTGAG 57.314 45.455 6.43 0.00 40.14 3.51
387 767 4.141620 GGAAGCAATAGATTGAGGAGGTGA 60.142 45.833 6.43 0.00 40.14 4.02
388 768 4.133078 GGAAGCAATAGATTGAGGAGGTG 58.867 47.826 6.43 0.00 40.14 4.00
389 769 3.137360 GGGAAGCAATAGATTGAGGAGGT 59.863 47.826 6.43 0.00 40.14 3.85
390 770 3.497584 GGGGAAGCAATAGATTGAGGAGG 60.498 52.174 6.43 0.00 40.14 4.30
391 771 3.137176 TGGGGAAGCAATAGATTGAGGAG 59.863 47.826 6.43 0.00 40.14 3.69
432 812 2.181021 GAGTAGTGTGGACCCGCG 59.819 66.667 0.00 0.00 0.00 6.46
438 818 2.708861 ACACAAATGGGAGTAGTGTGGA 59.291 45.455 7.00 0.00 43.05 4.02
505 885 2.432628 GTTGAGGTGACGAGGGCG 60.433 66.667 0.00 0.00 44.79 6.13
512 892 2.148916 TGTCGACATGTTGAGGTGAC 57.851 50.000 15.76 9.92 0.00 3.67
590 971 9.758651 GTTGATGAAAAAGTTACCACCTTAATT 57.241 29.630 0.00 0.00 0.00 1.40
639 1020 5.408909 TCATTTATACGCAACCGACTTTCAA 59.591 36.000 0.00 0.00 38.29 2.69
702 1083 3.508793 AGTGCCACAATGGATTCTTCTTG 59.491 43.478 0.00 0.00 40.96 3.02
755 1136 0.321122 GCCTGGTCTTGTGAGTGGAG 60.321 60.000 0.00 0.00 0.00 3.86
768 1149 2.089201 GCTTATTAAACGTGGCCTGGT 58.911 47.619 3.32 0.00 0.00 4.00
810 4712 9.173939 GATTTCTATTTGAATATTGGTTCGCTG 57.826 33.333 0.00 0.00 34.24 5.18
811 4713 9.125026 AGATTTCTATTTGAATATTGGTTCGCT 57.875 29.630 0.00 0.00 34.24 4.93
813 4715 9.884465 GGAGATTTCTATTTGAATATTGGTTCG 57.116 33.333 0.00 0.00 34.24 3.95
903 4810 1.067495 GCGACATAGATCAGGGGCTAC 60.067 57.143 0.00 0.00 0.00 3.58
1447 5357 1.153086 GGAGCCGGTGCATTCAGAT 60.153 57.895 1.90 0.00 41.13 2.90
1579 5491 7.308469 GGGTAACACGACAACAACCAATTAATA 60.308 37.037 0.00 0.00 39.74 0.98
1744 5656 4.809673 TCTACAAGCACTGATACACACAG 58.190 43.478 0.00 0.00 40.68 3.66
1769 5681 7.728532 ACCTCAAAAGTATTCCCAAAATGTAGT 59.271 33.333 0.00 0.00 0.00 2.73
1786 5698 7.957484 CGTAATACAAAGATGACACCTCAAAAG 59.043 37.037 0.00 0.00 0.00 2.27
1828 5740 7.178451 CAGGATTTTAAAAAGGCTTTAGGAGGA 59.822 37.037 13.77 0.00 0.00 3.71
1899 5811 5.551233 CTGATTCAGACCTCCACTTGTAAA 58.449 41.667 8.00 0.00 32.44 2.01
1941 5853 2.997897 GAGGTCGGGACAGGTGCT 60.998 66.667 0.75 0.00 0.00 4.40
2080 5993 3.318839 TCAGAAGGGCACAGAAACAAATG 59.681 43.478 0.00 0.00 0.00 2.32
2089 6002 1.233019 CAACACTCAGAAGGGCACAG 58.767 55.000 0.00 0.00 0.00 3.66
2152 6065 7.962964 ACAGAAACTTCTCAAATGTATTCGA 57.037 32.000 0.00 0.00 34.74 3.71
2198 6112 2.022934 GTAGGTCTAGTCCGGTCCAAG 58.977 57.143 0.00 0.00 0.00 3.61
2310 6224 9.645059 TTTTGTTGTTGTTGAATGATGAACTAA 57.355 25.926 0.00 0.00 0.00 2.24
2347 6263 6.652062 CACATAGCATACTGGCAAATAGATCA 59.348 38.462 0.00 0.00 35.83 2.92
2373 6289 1.683385 AGAAACAAAGGAAGCTGGTGC 59.317 47.619 0.00 0.00 40.05 5.01
2459 6375 7.523219 CACACTTGCGGTAAATTGTTATTCTA 58.477 34.615 0.00 0.00 0.00 2.10
2659 6609 2.582052 TGAGTTCAAATTTGGGAGCGT 58.418 42.857 17.90 0.00 0.00 5.07
2709 6659 3.701040 AGAACAAGTGCAAATGGTTCACT 59.299 39.130 18.14 1.41 42.28 3.41
2718 6668 9.920133 TTGCATTAATTATAGAACAAGTGCAAA 57.080 25.926 11.53 0.95 43.30 3.68
2923 6873 7.336931 ACAACTTACATGTTTCTTCAGAAGTGT 59.663 33.333 2.30 8.95 35.21 3.55
3027 6977 7.822161 TGACAAGAAAATCAGGAGAATTTCA 57.178 32.000 8.27 0.00 43.14 2.69
3170 7120 1.202568 TGAAGCGGTGCTCCATCATAG 60.203 52.381 5.52 0.00 38.25 2.23
3233 7183 1.786582 CAAGTTCTCGCTGCTGAGC 59.213 57.895 13.96 0.00 42.37 4.26
3284 7235 2.980233 GAAGGCCAGCGCAACAGT 60.980 61.111 11.47 0.00 36.38 3.55
3325 7276 2.562298 TGGCATGGACAAGGATTTTCAC 59.438 45.455 0.00 0.00 0.00 3.18
3404 7355 3.947834 CCAAAGTCAACTTCTTCCACAGT 59.052 43.478 0.00 0.00 34.61 3.55
3511 7462 2.472695 TAGAGTCAACGCAAGGCAAT 57.527 45.000 0.00 0.00 46.39 3.56
3528 7479 5.384063 TGCACACACCCATTTGTTATTAG 57.616 39.130 0.00 0.00 0.00 1.73
3614 7566 3.625764 TGGCCAGTTAATCTAACGAATGC 59.374 43.478 0.00 0.00 43.29 3.56
3640 7592 5.331876 ACTGTCAGAGTATCAGGTAAAGC 57.668 43.478 6.91 0.00 37.82 3.51
3690 7642 7.654923 CCTACATAGGTAAATTCGGTAAAGGTC 59.345 40.741 0.00 0.00 38.69 3.85
3894 7846 1.016130 CGAAGAGCCTGCAACACGAT 61.016 55.000 0.00 0.00 0.00 3.73
3941 7893 5.790593 TGTAGGTCAGTGTCCAACTTATTC 58.209 41.667 9.17 0.00 36.83 1.75
4063 8015 9.638176 ACCTCAGATGAAGAGCAATAAAATATT 57.362 29.630 0.00 0.00 0.00 1.28
4107 8059 5.711976 CCAAAGGAAATGTGTAGATCAAGGT 59.288 40.000 0.00 0.00 0.00 3.50
4145 8097 6.115446 TGCCATAAAGGAGTGAACTTAGATG 58.885 40.000 0.00 0.00 41.22 2.90
4732 8700 8.258007 TCGGAAATGTACTAAGATGAACAAGAT 58.742 33.333 0.00 0.00 0.00 2.40
4756 8833 2.998670 AGCATCACACAGTCAGAATTCG 59.001 45.455 0.00 0.00 0.00 3.34
4767 8844 1.079612 CGAGGAGCAGCATCACACA 60.080 57.895 0.00 0.00 0.00 3.72
4966 9043 0.597377 CGCATATACACGCAGCAGGA 60.597 55.000 0.00 0.00 0.00 3.86
4993 9070 4.823989 CCAGGGCTCGATTTATTTTCATCT 59.176 41.667 0.00 0.00 0.00 2.90
5035 9112 2.702592 TCCTTATTCCCGTGCGATTT 57.297 45.000 0.00 0.00 0.00 2.17
5038 9115 0.177141 CCTTCCTTATTCCCGTGCGA 59.823 55.000 0.00 0.00 0.00 5.10
5166 9243 2.125350 CTTCTCCAGCGGCAGGAC 60.125 66.667 10.36 0.00 0.00 3.85
5229 9306 1.980232 TCGGCCTCAGCTTCGGTAA 60.980 57.895 0.00 0.00 39.73 2.85
5318 9395 4.042187 ACTCAACTAATTCCTCCAAGCTGT 59.958 41.667 0.00 0.00 0.00 4.40
5337 9414 9.008965 ACACTTGTATTGTATGCAAATAACTCA 57.991 29.630 0.00 0.00 38.21 3.41
5338 9415 9.840427 AACACTTGTATTGTATGCAAATAACTC 57.160 29.630 0.00 0.00 38.21 3.01
5386 9463 1.280457 GACTCTGGAGGGGTCAATGT 58.720 55.000 2.58 0.00 0.00 2.71
5426 9503 6.495181 ACAAGATCTATATGTACACCAGAGGG 59.505 42.308 0.00 0.00 41.29 4.30
5482 9559 2.451493 TTGTTGGGCCAGGAGGGA 60.451 61.111 6.23 0.00 40.01 4.20
5527 9616 2.412325 GGTGCAAATGTTACGAACTCCG 60.412 50.000 0.00 0.00 45.44 4.63
5528 9617 2.412325 CGGTGCAAATGTTACGAACTCC 60.412 50.000 0.00 0.00 0.00 3.85
5546 9635 0.240411 GACGAGCTACAGACAACGGT 59.760 55.000 0.00 0.00 0.00 4.83
5554 9643 1.135373 ACACATTCCGACGAGCTACAG 60.135 52.381 0.00 0.00 0.00 2.74
5587 9676 4.711355 CAGGAGAAGAGGACAGAGATTTCT 59.289 45.833 0.00 0.00 0.00 2.52
5593 9682 0.823460 GCCAGGAGAAGAGGACAGAG 59.177 60.000 0.00 0.00 0.00 3.35
5616 9705 6.175471 TGAAGATGTCACATGTATGAAAGCT 58.825 36.000 0.00 0.00 33.91 3.74
5623 9712 8.045507 ACAAGAGATTGAAGATGTCACATGTAT 58.954 33.333 0.00 0.00 35.39 2.29
5632 9721 6.016777 GGAACAACACAAGAGATTGAAGATGT 60.017 38.462 0.00 0.00 0.00 3.06
5669 9759 7.652300 TGTACTGTAACAACACATGAGATTC 57.348 36.000 0.00 0.00 0.00 2.52
5692 9817 6.868339 TCGGCACTGTATCAGTTCATAATATG 59.132 38.462 0.00 0.00 42.59 1.78
5727 9860 4.082571 GCTTGAACTGCACCATGATAAGTT 60.083 41.667 0.00 0.00 33.91 2.66
5728 9861 3.441572 GCTTGAACTGCACCATGATAAGT 59.558 43.478 0.00 0.00 0.00 2.24
5729 9862 3.693085 AGCTTGAACTGCACCATGATAAG 59.307 43.478 0.00 0.00 0.00 1.73
5730 9863 3.689347 AGCTTGAACTGCACCATGATAA 58.311 40.909 0.00 0.00 0.00 1.75
5731 9864 3.354948 AGCTTGAACTGCACCATGATA 57.645 42.857 0.00 0.00 0.00 2.15
5732 9865 2.211250 AGCTTGAACTGCACCATGAT 57.789 45.000 0.00 0.00 0.00 2.45
5733 9866 1.985473 AAGCTTGAACTGCACCATGA 58.015 45.000 0.00 0.00 0.00 3.07
5734 9867 2.806608 AAAGCTTGAACTGCACCATG 57.193 45.000 0.00 0.00 0.00 3.66
5735 9868 3.254166 CAGTAAAGCTTGAACTGCACCAT 59.746 43.478 22.32 0.00 34.73 3.55
5736 9869 2.618241 CAGTAAAGCTTGAACTGCACCA 59.382 45.455 22.32 0.00 34.73 4.17
5737 9870 2.030805 CCAGTAAAGCTTGAACTGCACC 60.031 50.000 26.03 0.00 39.42 5.01
5738 9871 2.618709 ACCAGTAAAGCTTGAACTGCAC 59.381 45.455 26.03 7.74 39.42 4.57
5739 9872 2.878406 GACCAGTAAAGCTTGAACTGCA 59.122 45.455 26.03 0.00 39.42 4.41
5740 9873 3.142174 AGACCAGTAAAGCTTGAACTGC 58.858 45.455 26.03 17.75 39.42 4.40
5741 9874 5.514279 CAAAGACCAGTAAAGCTTGAACTG 58.486 41.667 25.10 25.10 40.24 3.16
5742 9875 4.036852 GCAAAGACCAGTAAAGCTTGAACT 59.963 41.667 0.00 4.11 0.00 3.01
5743 9876 4.202010 TGCAAAGACCAGTAAAGCTTGAAC 60.202 41.667 0.00 1.38 0.00 3.18
5744 9877 3.951037 TGCAAAGACCAGTAAAGCTTGAA 59.049 39.130 0.00 0.00 0.00 2.69
5745 9878 3.315191 GTGCAAAGACCAGTAAAGCTTGA 59.685 43.478 0.00 0.00 0.00 3.02
5746 9879 3.316308 AGTGCAAAGACCAGTAAAGCTTG 59.684 43.478 0.00 0.00 0.00 4.01
5747 9880 3.555966 AGTGCAAAGACCAGTAAAGCTT 58.444 40.909 0.00 0.00 0.00 3.74
5748 9881 3.214696 AGTGCAAAGACCAGTAAAGCT 57.785 42.857 0.00 0.00 0.00 3.74
5749 9882 5.875359 AGTATAGTGCAAAGACCAGTAAAGC 59.125 40.000 0.00 0.00 0.00 3.51
5750 9883 7.907214 AAGTATAGTGCAAAGACCAGTAAAG 57.093 36.000 0.00 0.00 0.00 1.85
5751 9884 8.154856 AGAAAGTATAGTGCAAAGACCAGTAAA 58.845 33.333 0.00 0.00 0.00 2.01
5752 9885 7.676947 AGAAAGTATAGTGCAAAGACCAGTAA 58.323 34.615 0.00 0.00 0.00 2.24
5753 9886 7.039293 TGAGAAAGTATAGTGCAAAGACCAGTA 60.039 37.037 0.00 0.00 0.00 2.74
5754 9887 6.115448 AGAAAGTATAGTGCAAAGACCAGT 57.885 37.500 0.00 0.00 0.00 4.00
5755 9888 6.166279 TGAGAAAGTATAGTGCAAAGACCAG 58.834 40.000 0.00 0.00 0.00 4.00
5756 9889 6.109156 TGAGAAAGTATAGTGCAAAGACCA 57.891 37.500 0.00 0.00 0.00 4.02
5757 9890 6.595716 ACATGAGAAAGTATAGTGCAAAGACC 59.404 38.462 0.00 0.00 0.00 3.85
5758 9891 7.602517 ACATGAGAAAGTATAGTGCAAAGAC 57.397 36.000 0.00 0.00 0.00 3.01
5759 9892 8.621532 AAACATGAGAAAGTATAGTGCAAAGA 57.378 30.769 0.00 0.00 0.00 2.52
5760 9893 9.121517 CAAAACATGAGAAAGTATAGTGCAAAG 57.878 33.333 0.00 0.00 0.00 2.77
5761 9894 7.594758 GCAAAACATGAGAAAGTATAGTGCAAA 59.405 33.333 0.00 0.00 0.00 3.68
5762 9895 7.040478 AGCAAAACATGAGAAAGTATAGTGCAA 60.040 33.333 0.00 0.00 0.00 4.08
5776 9909 3.004629 TGCACACCTTAGCAAAACATGAG 59.995 43.478 0.00 0.00 37.90 2.90
5804 9937 9.778741 TGAATGTTTACTCAAATCTTACAGAGT 57.221 29.630 0.00 0.00 43.25 3.24
5842 9979 5.601778 CGATTGAAACGCTACAGTAGTAC 57.398 43.478 9.42 0.00 0.00 2.73
5860 9997 4.764679 TGCAGTAGAAAACAATGCGATT 57.235 36.364 0.00 0.00 39.74 3.34
5867 10005 4.377021 ACACTCGATGCAGTAGAAAACAA 58.623 39.130 0.00 0.00 0.00 2.83
5886 10024 1.574702 GCCCGGTGCAGTAGAAACAC 61.575 60.000 9.72 0.00 40.77 3.32
5943 10081 8.781196 CAATACTGCTTTGTGATTCTATATGCT 58.219 33.333 0.00 0.00 0.00 3.79
5944 10082 8.777413 TCAATACTGCTTTGTGATTCTATATGC 58.223 33.333 0.00 0.00 0.00 3.14
5947 10085 9.890629 AGTTCAATACTGCTTTGTGATTCTATA 57.109 29.630 0.00 0.00 35.19 1.31
5954 10092 7.744087 ACAATAGTTCAATACTGCTTTGTGA 57.256 32.000 0.00 0.00 37.73 3.58
5961 10099 9.677567 TTGAAGAAAACAATAGTTCAATACTGC 57.322 29.630 0.00 0.00 36.84 4.40
5980 10118 9.773328 CACTCGCATTCTATTTTTATTGAAGAA 57.227 29.630 0.00 0.00 0.00 2.52
5984 10122 7.065683 TCAGCACTCGCATTCTATTTTTATTGA 59.934 33.333 0.00 0.00 42.27 2.57
5985 10123 7.188834 TCAGCACTCGCATTCTATTTTTATTG 58.811 34.615 0.00 0.00 42.27 1.90
5986 10124 7.320443 TCAGCACTCGCATTCTATTTTTATT 57.680 32.000 0.00 0.00 42.27 1.40
5987 10125 6.925610 TCAGCACTCGCATTCTATTTTTAT 57.074 33.333 0.00 0.00 42.27 1.40
5988 10126 6.735678 TTCAGCACTCGCATTCTATTTTTA 57.264 33.333 0.00 0.00 42.27 1.52
5989 10127 5.627499 TTCAGCACTCGCATTCTATTTTT 57.373 34.783 0.00 0.00 42.27 1.94
5990 10128 5.048782 TGTTTCAGCACTCGCATTCTATTTT 60.049 36.000 0.00 0.00 42.27 1.82
5991 10129 4.455533 TGTTTCAGCACTCGCATTCTATTT 59.544 37.500 0.00 0.00 42.27 1.40
5992 10130 4.002982 TGTTTCAGCACTCGCATTCTATT 58.997 39.130 0.00 0.00 42.27 1.73
5993 10131 3.599343 TGTTTCAGCACTCGCATTCTAT 58.401 40.909 0.00 0.00 42.27 1.98
5994 10132 3.038788 TGTTTCAGCACTCGCATTCTA 57.961 42.857 0.00 0.00 42.27 2.10
5995 10133 1.882912 TGTTTCAGCACTCGCATTCT 58.117 45.000 0.00 0.00 42.27 2.40
5996 10134 2.907910 ATGTTTCAGCACTCGCATTC 57.092 45.000 0.00 0.00 42.27 2.67
5997 10135 3.254166 AGAAATGTTTCAGCACTCGCATT 59.746 39.130 8.09 0.00 39.61 3.56
5998 10136 2.816087 AGAAATGTTTCAGCACTCGCAT 59.184 40.909 8.09 0.00 39.61 4.73
5999 10137 2.221169 AGAAATGTTTCAGCACTCGCA 58.779 42.857 8.09 0.00 39.61 5.10
6000 10138 2.977405 AGAAATGTTTCAGCACTCGC 57.023 45.000 8.09 0.00 39.61 5.03
6001 10139 4.686091 TCTGTAGAAATGTTTCAGCACTCG 59.314 41.667 8.09 0.00 39.61 4.18
6002 10140 6.545504 TTCTGTAGAAATGTTTCAGCACTC 57.454 37.500 8.09 0.00 39.61 3.51
6003 10141 5.049129 GCTTCTGTAGAAATGTTTCAGCACT 60.049 40.000 8.09 0.00 39.61 4.40
6004 10142 5.149977 GCTTCTGTAGAAATGTTTCAGCAC 58.850 41.667 8.09 3.89 39.61 4.40
6005 10143 4.083855 CGCTTCTGTAGAAATGTTTCAGCA 60.084 41.667 8.09 5.40 39.61 4.41
6006 10144 4.398247 CGCTTCTGTAGAAATGTTTCAGC 58.602 43.478 8.09 5.91 39.61 4.26
6007 10145 4.690748 TCCGCTTCTGTAGAAATGTTTCAG 59.309 41.667 8.09 0.00 39.61 3.02
6008 10146 4.637276 TCCGCTTCTGTAGAAATGTTTCA 58.363 39.130 8.09 0.00 39.61 2.69
6009 10147 5.179555 ACTTCCGCTTCTGTAGAAATGTTTC 59.820 40.000 0.00 0.00 37.45 2.78
6010 10148 5.063880 ACTTCCGCTTCTGTAGAAATGTTT 58.936 37.500 0.00 0.00 33.07 2.83
6011 10149 4.642429 ACTTCCGCTTCTGTAGAAATGTT 58.358 39.130 0.00 0.00 33.07 2.71
6012 10150 4.273148 ACTTCCGCTTCTGTAGAAATGT 57.727 40.909 0.00 0.00 33.07 2.71
6013 10151 5.385617 CAAACTTCCGCTTCTGTAGAAATG 58.614 41.667 0.00 0.00 33.07 2.32
6014 10152 4.455877 CCAAACTTCCGCTTCTGTAGAAAT 59.544 41.667 0.00 0.00 33.07 2.17
6015 10153 3.813166 CCAAACTTCCGCTTCTGTAGAAA 59.187 43.478 0.00 0.00 33.07 2.52
6016 10154 3.070446 TCCAAACTTCCGCTTCTGTAGAA 59.930 43.478 0.00 0.00 0.00 2.10
6017 10155 2.631062 TCCAAACTTCCGCTTCTGTAGA 59.369 45.455 0.00 0.00 0.00 2.59
6018 10156 3.040147 TCCAAACTTCCGCTTCTGTAG 57.960 47.619 0.00 0.00 0.00 2.74
6019 10157 3.695830 ATCCAAACTTCCGCTTCTGTA 57.304 42.857 0.00 0.00 0.00 2.74
6020 10158 2.568623 ATCCAAACTTCCGCTTCTGT 57.431 45.000 0.00 0.00 0.00 3.41
6021 10159 5.334414 GCATATATCCAAACTTCCGCTTCTG 60.334 44.000 0.00 0.00 0.00 3.02
6022 10160 4.757149 GCATATATCCAAACTTCCGCTTCT 59.243 41.667 0.00 0.00 0.00 2.85
6023 10161 4.757149 AGCATATATCCAAACTTCCGCTTC 59.243 41.667 0.00 0.00 0.00 3.86
6024 10162 4.516698 CAGCATATATCCAAACTTCCGCTT 59.483 41.667 0.00 0.00 0.00 4.68
6025 10163 4.067896 CAGCATATATCCAAACTTCCGCT 58.932 43.478 0.00 0.00 0.00 5.52
6026 10164 3.365364 GCAGCATATATCCAAACTTCCGC 60.365 47.826 0.00 0.00 0.00 5.54
6027 10165 3.814842 TGCAGCATATATCCAAACTTCCG 59.185 43.478 0.00 0.00 0.00 4.30
6028 10166 5.772825 TTGCAGCATATATCCAAACTTCC 57.227 39.130 0.00 0.00 0.00 3.46
6035 10173 9.768662 CACAGTATATATTGCAGCATATATCCA 57.231 33.333 12.25 0.00 30.90 3.41
6036 10174 9.987272 TCACAGTATATATTGCAGCATATATCC 57.013 33.333 12.25 4.30 30.90 2.59
6038 10176 9.993454 CCTCACAGTATATATTGCAGCATATAT 57.007 33.333 13.10 13.10 32.51 0.86
6039 10177 8.981659 ACCTCACAGTATATATTGCAGCATATA 58.018 33.333 0.00 1.70 0.00 0.86
6040 10178 7.767659 CACCTCACAGTATATATTGCAGCATAT 59.232 37.037 0.00 0.00 0.00 1.78
6041 10179 7.099120 CACCTCACAGTATATATTGCAGCATA 58.901 38.462 0.00 0.00 0.00 3.14
6042 10180 5.936372 CACCTCACAGTATATATTGCAGCAT 59.064 40.000 0.00 0.00 0.00 3.79
6043 10181 5.163311 ACACCTCACAGTATATATTGCAGCA 60.163 40.000 5.22 0.00 0.00 4.41
6044 10182 5.178252 CACACCTCACAGTATATATTGCAGC 59.822 44.000 5.22 0.00 0.00 5.25
6045 10183 5.178252 GCACACCTCACAGTATATATTGCAG 59.822 44.000 5.22 2.36 0.00 4.41
6046 10184 5.056480 GCACACCTCACAGTATATATTGCA 58.944 41.667 5.22 0.00 0.00 4.08
6047 10185 5.178252 CAGCACACCTCACAGTATATATTGC 59.822 44.000 5.22 0.00 0.00 3.56
6048 10186 5.698089 CCAGCACACCTCACAGTATATATTG 59.302 44.000 3.83 3.83 0.00 1.90
6049 10187 5.221722 CCCAGCACACCTCACAGTATATATT 60.222 44.000 0.00 0.00 0.00 1.28
6050 10188 4.284490 CCCAGCACACCTCACAGTATATAT 59.716 45.833 0.00 0.00 0.00 0.86
6051 10189 3.641436 CCCAGCACACCTCACAGTATATA 59.359 47.826 0.00 0.00 0.00 0.86
6052 10190 2.435805 CCCAGCACACCTCACAGTATAT 59.564 50.000 0.00 0.00 0.00 0.86
6053 10191 1.831106 CCCAGCACACCTCACAGTATA 59.169 52.381 0.00 0.00 0.00 1.47
6054 10192 0.615331 CCCAGCACACCTCACAGTAT 59.385 55.000 0.00 0.00 0.00 2.12
6055 10193 0.762842 ACCCAGCACACCTCACAGTA 60.763 55.000 0.00 0.00 0.00 2.74
6056 10194 2.072487 ACCCAGCACACCTCACAGT 61.072 57.895 0.00 0.00 0.00 3.55
6057 10195 1.598962 CACCCAGCACACCTCACAG 60.599 63.158 0.00 0.00 0.00 3.66
6058 10196 1.051556 TACACCCAGCACACCTCACA 61.052 55.000 0.00 0.00 0.00 3.58
6059 10197 0.324943 ATACACCCAGCACACCTCAC 59.675 55.000 0.00 0.00 0.00 3.51
6060 10198 1.945580 TATACACCCAGCACACCTCA 58.054 50.000 0.00 0.00 0.00 3.86
6061 10199 2.838736 CATATACACCCAGCACACCTC 58.161 52.381 0.00 0.00 0.00 3.85
6062 10200 1.134098 GCATATACACCCAGCACACCT 60.134 52.381 0.00 0.00 0.00 4.00
6063 10201 1.134098 AGCATATACACCCAGCACACC 60.134 52.381 0.00 0.00 0.00 4.16
6064 10202 1.942657 CAGCATATACACCCAGCACAC 59.057 52.381 0.00 0.00 0.00 3.82
6065 10203 1.559219 ACAGCATATACACCCAGCACA 59.441 47.619 0.00 0.00 0.00 4.57
6066 10204 2.213499 GACAGCATATACACCCAGCAC 58.787 52.381 0.00 0.00 0.00 4.40
6067 10205 1.836802 TGACAGCATATACACCCAGCA 59.163 47.619 0.00 0.00 0.00 4.41
6068 10206 2.487934 CTGACAGCATATACACCCAGC 58.512 52.381 0.00 0.00 0.00 4.85
6069 10207 2.103771 AGCTGACAGCATATACACCCAG 59.896 50.000 28.43 0.00 45.56 4.45
6070 10208 2.118679 AGCTGACAGCATATACACCCA 58.881 47.619 28.43 0.00 45.56 4.51
6071 10209 2.158900 ACAGCTGACAGCATATACACCC 60.159 50.000 28.43 0.00 45.56 4.61
6072 10210 3.126831 GACAGCTGACAGCATATACACC 58.873 50.000 28.43 5.67 45.56 4.16
6073 10211 3.126831 GGACAGCTGACAGCATATACAC 58.873 50.000 28.43 11.93 45.56 2.90
6074 10212 2.765699 TGGACAGCTGACAGCATATACA 59.234 45.455 28.43 16.81 45.56 2.29
6075 10213 3.388308 CTGGACAGCTGACAGCATATAC 58.612 50.000 28.43 14.47 45.56 1.47
6076 10214 3.740631 CTGGACAGCTGACAGCATATA 57.259 47.619 28.43 10.17 45.56 0.86
6077 10215 2.616634 CTGGACAGCTGACAGCATAT 57.383 50.000 28.43 13.53 45.56 1.78
6089 10227 2.102925 ACCATTGTTTTTGGCTGGACAG 59.897 45.455 0.00 0.00 37.81 3.51
6090 10228 2.114616 ACCATTGTTTTTGGCTGGACA 58.885 42.857 0.00 0.00 37.81 4.02
6091 10229 2.908688 ACCATTGTTTTTGGCTGGAC 57.091 45.000 0.00 0.00 37.81 4.02
6092 10230 3.922171 AAACCATTGTTTTTGGCTGGA 57.078 38.095 0.00 0.00 41.92 3.86
6093 10231 3.498018 GCTAAACCATTGTTTTTGGCTGG 59.502 43.478 0.00 0.00 41.92 4.85
6094 10232 4.379652 AGCTAAACCATTGTTTTTGGCTG 58.620 39.130 14.26 0.00 41.92 4.85
6095 10233 4.100808 TGAGCTAAACCATTGTTTTTGGCT 59.899 37.500 14.69 14.69 41.92 4.75
6096 10234 4.376146 TGAGCTAAACCATTGTTTTTGGC 58.624 39.130 0.00 7.74 41.92 4.52
6097 10235 4.990426 CCTGAGCTAAACCATTGTTTTTGG 59.010 41.667 0.00 0.00 41.92 3.28
6098 10236 4.448732 GCCTGAGCTAAACCATTGTTTTTG 59.551 41.667 0.00 0.00 44.12 2.44
6099 10237 4.631131 GCCTGAGCTAAACCATTGTTTTT 58.369 39.130 0.00 0.00 44.12 1.94
6100 10238 3.305335 CGCCTGAGCTAAACCATTGTTTT 60.305 43.478 0.00 0.00 44.12 2.43
6101 10239 2.228822 CGCCTGAGCTAAACCATTGTTT 59.771 45.455 0.13 0.13 46.22 2.83
6102 10240 1.812571 CGCCTGAGCTAAACCATTGTT 59.187 47.619 0.00 0.00 36.60 2.83
6103 10241 1.003118 TCGCCTGAGCTAAACCATTGT 59.997 47.619 0.00 0.00 36.60 2.71
6104 10242 1.667724 CTCGCCTGAGCTAAACCATTG 59.332 52.381 0.00 0.00 34.96 2.82
6105 10243 1.555075 TCTCGCCTGAGCTAAACCATT 59.445 47.619 0.00 0.00 42.26 3.16
6106 10244 1.134670 GTCTCGCCTGAGCTAAACCAT 60.135 52.381 0.00 0.00 42.26 3.55
6107 10245 0.246635 GTCTCGCCTGAGCTAAACCA 59.753 55.000 0.00 0.00 42.26 3.67
6108 10246 0.246635 TGTCTCGCCTGAGCTAAACC 59.753 55.000 0.00 0.00 42.26 3.27
6109 10247 2.301577 ATGTCTCGCCTGAGCTAAAC 57.698 50.000 0.00 0.00 42.26 2.01
6110 10248 4.465632 TTTATGTCTCGCCTGAGCTAAA 57.534 40.909 0.00 0.00 42.26 1.85
6111 10249 4.371786 CATTTATGTCTCGCCTGAGCTAA 58.628 43.478 0.00 0.00 42.26 3.09
6112 10250 3.243873 CCATTTATGTCTCGCCTGAGCTA 60.244 47.826 0.00 0.00 42.26 3.32
6113 10251 2.484417 CCATTTATGTCTCGCCTGAGCT 60.484 50.000 0.00 0.00 42.26 4.09
6114 10252 1.869767 CCATTTATGTCTCGCCTGAGC 59.130 52.381 0.00 0.00 42.26 4.26
6115 10253 3.185246 ACCATTTATGTCTCGCCTGAG 57.815 47.619 0.00 0.00 43.99 3.35
6116 10254 4.955811 ATACCATTTATGTCTCGCCTGA 57.044 40.909 0.00 0.00 0.00 3.86
6117 10255 4.452455 GGAATACCATTTATGTCTCGCCTG 59.548 45.833 0.00 0.00 35.97 4.85
6118 10256 4.102524 TGGAATACCATTTATGTCTCGCCT 59.897 41.667 0.00 0.00 41.77 5.52
6119 10257 4.385825 TGGAATACCATTTATGTCTCGCC 58.614 43.478 0.00 0.00 41.77 5.54
6140 10278 2.876091 CAGCATTGCACTCCAAAGATG 58.124 47.619 11.91 0.00 36.92 2.90
6153 10291 0.796870 CGTGAGCACATGCAGCATTG 60.797 55.000 4.69 8.96 45.16 2.82
6154 10292 1.504900 CGTGAGCACATGCAGCATT 59.495 52.632 4.69 0.00 45.16 3.56
6155 10293 3.184206 CGTGAGCACATGCAGCAT 58.816 55.556 0.52 0.52 45.16 3.79
6167 10305 2.167219 CATGTAGCCGGTGCGTGAG 61.167 63.158 1.90 0.00 44.33 3.51
6168 10306 2.125713 CATGTAGCCGGTGCGTGA 60.126 61.111 1.90 0.00 44.33 4.35
6169 10307 2.434185 ACATGTAGCCGGTGCGTG 60.434 61.111 1.90 7.97 44.33 5.34
6170 10308 1.317431 TAGACATGTAGCCGGTGCGT 61.317 55.000 1.90 0.00 44.33 5.24
6171 10309 0.179121 TTAGACATGTAGCCGGTGCG 60.179 55.000 1.90 0.00 44.33 5.34
6172 10310 2.018542 TTTAGACATGTAGCCGGTGC 57.981 50.000 1.90 0.00 37.95 5.01
6173 10311 2.872245 CCATTTAGACATGTAGCCGGTG 59.128 50.000 1.90 0.00 0.00 4.94
6174 10312 2.769663 TCCATTTAGACATGTAGCCGGT 59.230 45.455 1.90 0.00 0.00 5.28
6175 10313 3.469008 TCCATTTAGACATGTAGCCGG 57.531 47.619 0.00 0.00 0.00 6.13
6176 10314 4.816385 ACAATCCATTTAGACATGTAGCCG 59.184 41.667 0.00 0.00 0.00 5.52
6177 10315 7.986085 ATACAATCCATTTAGACATGTAGCC 57.014 36.000 0.00 0.00 29.80 3.93
6213 10351 2.278857 CGAGATCCTTCGGTGCCG 60.279 66.667 3.94 3.94 36.95 5.69
6214 10352 0.105039 ATTCGAGATCCTTCGGTGCC 59.895 55.000 4.72 0.00 40.83 5.01
6215 10353 1.202417 TGATTCGAGATCCTTCGGTGC 60.202 52.381 4.72 0.00 40.83 5.01
6216 10354 2.871182 TGATTCGAGATCCTTCGGTG 57.129 50.000 4.72 0.00 40.83 4.94
6217 10355 5.531122 TTAATGATTCGAGATCCTTCGGT 57.469 39.130 4.72 0.00 40.83 4.69
6218 10356 6.844696 TTTTAATGATTCGAGATCCTTCGG 57.155 37.500 4.72 0.00 40.83 4.30
6219 10357 9.411801 TCTATTTTAATGATTCGAGATCCTTCG 57.588 33.333 0.00 0.00 41.79 3.79
6226 10364 9.751542 GTCCTCTTCTATTTTAATGATTCGAGA 57.248 33.333 0.00 0.00 0.00 4.04
6227 10365 8.695284 CGTCCTCTTCTATTTTAATGATTCGAG 58.305 37.037 0.00 0.00 0.00 4.04
6228 10366 7.652105 CCGTCCTCTTCTATTTTAATGATTCGA 59.348 37.037 0.00 0.00 0.00 3.71
6229 10367 7.438459 ACCGTCCTCTTCTATTTTAATGATTCG 59.562 37.037 0.00 0.00 0.00 3.34
6230 10368 8.664211 ACCGTCCTCTTCTATTTTAATGATTC 57.336 34.615 0.00 0.00 0.00 2.52
6231 10369 8.893727 CAACCGTCCTCTTCTATTTTAATGATT 58.106 33.333 0.00 0.00 0.00 2.57
6232 10370 7.012421 GCAACCGTCCTCTTCTATTTTAATGAT 59.988 37.037 0.00 0.00 0.00 2.45
6233 10371 6.315393 GCAACCGTCCTCTTCTATTTTAATGA 59.685 38.462 0.00 0.00 0.00 2.57
6234 10372 6.458342 GGCAACCGTCCTCTTCTATTTTAATG 60.458 42.308 0.00 0.00 0.00 1.90
6235 10373 5.589050 GGCAACCGTCCTCTTCTATTTTAAT 59.411 40.000 0.00 0.00 0.00 1.40
6236 10374 4.939439 GGCAACCGTCCTCTTCTATTTTAA 59.061 41.667 0.00 0.00 0.00 1.52
6237 10375 4.510571 GGCAACCGTCCTCTTCTATTTTA 58.489 43.478 0.00 0.00 0.00 1.52
6238 10376 3.344515 GGCAACCGTCCTCTTCTATTTT 58.655 45.455 0.00 0.00 0.00 1.82
6239 10377 2.987232 GGCAACCGTCCTCTTCTATTT 58.013 47.619 0.00 0.00 0.00 1.40
6240 10378 2.693267 GGCAACCGTCCTCTTCTATT 57.307 50.000 0.00 0.00 0.00 1.73
6254 10392 4.274214 GGTTCTGTATATTAACCGGGCAAC 59.726 45.833 6.32 0.00 33.85 4.17
6255 10393 4.080469 TGGTTCTGTATATTAACCGGGCAA 60.080 41.667 6.32 0.00 44.62 4.52
6256 10394 3.455177 TGGTTCTGTATATTAACCGGGCA 59.545 43.478 6.32 0.00 44.62 5.36
6257 10395 4.062991 CTGGTTCTGTATATTAACCGGGC 58.937 47.826 6.32 0.00 44.62 6.13
6258 10396 5.070047 AGTCTGGTTCTGTATATTAACCGGG 59.930 44.000 6.32 0.00 45.72 5.73
6259 10397 6.158023 AGTCTGGTTCTGTATATTAACCGG 57.842 41.667 0.00 0.00 46.62 5.28
6260 10398 9.590451 TTTTAGTCTGGTTCTGTATATTAACCG 57.410 33.333 0.00 0.00 44.62 4.44
6263 10401 9.590451 CGGTTTTAGTCTGGTTCTGTATATTAA 57.410 33.333 0.00 0.00 0.00 1.40
6264 10402 8.752187 ACGGTTTTAGTCTGGTTCTGTATATTA 58.248 33.333 0.00 0.00 0.00 0.98
6265 10403 7.618137 ACGGTTTTAGTCTGGTTCTGTATATT 58.382 34.615 0.00 0.00 0.00 1.28
6266 10404 7.093640 TGACGGTTTTAGTCTGGTTCTGTATAT 60.094 37.037 0.00 0.00 39.24 0.86
6267 10405 6.209192 TGACGGTTTTAGTCTGGTTCTGTATA 59.791 38.462 0.00 0.00 39.24 1.47
6268 10406 5.011329 TGACGGTTTTAGTCTGGTTCTGTAT 59.989 40.000 0.00 0.00 39.24 2.29
6269 10407 4.341806 TGACGGTTTTAGTCTGGTTCTGTA 59.658 41.667 0.00 0.00 39.24 2.74
6270 10408 3.133362 TGACGGTTTTAGTCTGGTTCTGT 59.867 43.478 0.00 0.00 39.24 3.41
6271 10409 3.493503 GTGACGGTTTTAGTCTGGTTCTG 59.506 47.826 0.00 0.00 39.24 3.02
6272 10410 3.133362 TGTGACGGTTTTAGTCTGGTTCT 59.867 43.478 0.00 0.00 39.24 3.01
6273 10411 3.460103 TGTGACGGTTTTAGTCTGGTTC 58.540 45.455 0.00 0.00 39.24 3.62
6274 10412 3.547054 TGTGACGGTTTTAGTCTGGTT 57.453 42.857 0.00 0.00 39.24 3.67
6275 10413 3.200483 GTTGTGACGGTTTTAGTCTGGT 58.800 45.455 0.00 0.00 39.24 4.00
6276 10414 3.199677 TGTTGTGACGGTTTTAGTCTGG 58.800 45.455 0.00 0.00 39.24 3.86
6277 10415 3.303132 GCTGTTGTGACGGTTTTAGTCTG 60.303 47.826 0.00 0.00 39.24 3.51
6278 10416 2.870411 GCTGTTGTGACGGTTTTAGTCT 59.130 45.455 0.00 0.00 39.24 3.24
6279 10417 2.032290 GGCTGTTGTGACGGTTTTAGTC 60.032 50.000 0.00 0.00 38.98 2.59
6280 10418 1.944709 GGCTGTTGTGACGGTTTTAGT 59.055 47.619 0.00 0.00 34.50 2.24
6281 10419 1.265905 GGGCTGTTGTGACGGTTTTAG 59.734 52.381 0.00 0.00 34.50 1.85
6282 10420 1.310904 GGGCTGTTGTGACGGTTTTA 58.689 50.000 0.00 0.00 34.50 1.52
6283 10421 0.681564 TGGGCTGTTGTGACGGTTTT 60.682 50.000 0.00 0.00 34.50 2.43
6284 10422 1.077357 TGGGCTGTTGTGACGGTTT 60.077 52.632 0.00 0.00 34.50 3.27
6285 10423 1.822186 GTGGGCTGTTGTGACGGTT 60.822 57.895 0.00 0.00 34.50 4.44
6286 10424 2.203153 GTGGGCTGTTGTGACGGT 60.203 61.111 0.00 0.00 34.50 4.83
6287 10425 2.203139 TGTGGGCTGTTGTGACGG 60.203 61.111 0.00 0.00 35.15 4.79
6288 10426 3.022287 GTGTGGGCTGTTGTGACG 58.978 61.111 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.