Multiple sequence alignment - TraesCS5B01G348200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G348200 chr5B 100.000 3551 0 0 1 3551 529529753 529526203 0.000000e+00 6558.0
1 TraesCS5B01G348200 chr5B 91.183 465 37 2 2124 2585 416545643 416545180 2.330000e-176 628.0
2 TraesCS5B01G348200 chr5B 90.625 288 27 0 1743 2030 416546062 416545775 2.000000e-102 383.0
3 TraesCS5B01G348200 chr5B 94.191 241 13 1 3236 3476 361130123 361130362 2.010000e-97 366.0
4 TraesCS5B01G348200 chr5B 86.567 67 7 2 1034 1098 416546324 416546258 4.920000e-09 73.1
5 TraesCS5B01G348200 chr5D 92.676 1065 65 7 2128 3181 435887378 435886316 0.000000e+00 1522.0
6 TraesCS5B01G348200 chr5D 83.688 705 78 26 42 734 6114447 6115126 6.470000e-177 630.0
7 TraesCS5B01G348200 chr5D 87.701 561 41 14 756 1289 435888619 435888060 2.330000e-176 628.0
8 TraesCS5B01G348200 chr5D 93.949 314 15 3 1723 2033 435887846 435887534 4.150000e-129 472.0
9 TraesCS5B01G348200 chr5D 96.591 264 8 1 1460 1722 126262687 126262950 1.510000e-118 436.0
10 TraesCS5B01G348200 chr5A 85.227 1496 147 31 1718 3181 549805369 549803916 0.000000e+00 1471.0
11 TraesCS5B01G348200 chr5A 89.636 1071 95 9 2103 3163 549784005 549782941 0.000000e+00 1349.0
12 TraesCS5B01G348200 chr5A 89.663 445 35 8 791 1233 549794047 549793612 1.110000e-154 556.0
13 TraesCS5B01G348200 chr5A 90.625 320 24 5 1718 2033 549793189 549792872 1.520000e-113 420.0
14 TraesCS5B01G348200 chr5A 94.030 201 9 2 1090 1288 549880182 549879983 5.760000e-78 302.0
15 TraesCS5B01G348200 chr5A 87.845 181 16 2 1289 1464 549793365 549793186 1.290000e-49 207.0
16 TraesCS5B01G348200 chr5A 100.000 36 0 0 791 826 549899430 549899395 2.290000e-07 67.6
17 TraesCS5B01G348200 chr7A 86.212 660 66 19 86 734 628006108 628006753 0.000000e+00 691.0
18 TraesCS5B01G348200 chr7A 94.468 235 13 0 3242 3476 81569864 81569630 2.610000e-96 363.0
19 TraesCS5B01G348200 chr7D 85.460 674 71 21 42 703 206841559 206842217 0.000000e+00 676.0
20 TraesCS5B01G348200 chr7D 85.514 642 66 18 106 737 523543770 523543146 0.000000e+00 645.0
21 TraesCS5B01G348200 chr7D 83.356 721 82 26 1 708 178284575 178285270 1.800000e-177 632.0
22 TraesCS5B01G348200 chr7D 85.299 619 63 20 99 710 8472588 8471991 6.520000e-172 614.0
23 TraesCS5B01G348200 chr7D 94.894 235 12 0 3242 3476 381422113 381421879 5.600000e-98 368.0
24 TraesCS5B01G348200 chr7D 94.043 235 14 0 3242 3476 505238952 505238718 1.210000e-94 357.0
25 TraesCS5B01G348200 chr4A 85.781 647 68 18 1 637 158582991 158583623 0.000000e+00 664.0
26 TraesCS5B01G348200 chr4A 94.421 233 13 0 3244 3476 663174364 663174132 3.370000e-95 359.0
27 TraesCS5B01G348200 chr1B 85.281 659 66 22 99 734 289525451 289526101 0.000000e+00 651.0
28 TraesCS5B01G348200 chr1B 84.867 641 72 19 1 623 530487042 530486409 1.080000e-174 623.0
29 TraesCS5B01G348200 chr1B 94.915 236 12 0 3241 3476 455213650 455213415 1.560000e-98 370.0
30 TraesCS5B01G348200 chr1B 85.088 114 9 6 1 108 530487002 530486891 3.750000e-20 110.0
31 TraesCS5B01G348200 chrUn 96.629 267 7 2 1460 1724 108799234 108799500 3.250000e-120 442.0
32 TraesCS5B01G348200 chr6A 96.578 263 7 1 1462 1722 76520939 76520677 5.440000e-118 435.0
33 TraesCS5B01G348200 chr3D 96.591 264 6 3 1459 1722 107043537 107043797 5.440000e-118 435.0
34 TraesCS5B01G348200 chr3D 94.928 276 11 2 1462 1735 83428535 83428809 2.530000e-116 429.0
35 TraesCS5B01G348200 chr3D 94.035 285 13 4 1463 1744 407233211 407232928 2.530000e-116 429.0
36 TraesCS5B01G348200 chr3A 95.572 271 9 3 1459 1727 161457425 161457156 7.040000e-117 431.0
37 TraesCS5B01G348200 chr2D 95.896 268 8 3 1456 1721 204112950 204112684 7.040000e-117 431.0
38 TraesCS5B01G348200 chr2D 94.468 235 11 1 3242 3476 283408324 283408092 9.370000e-96 361.0
39 TraesCS5B01G348200 chr6D 94.565 276 12 2 1462 1735 256101890 256102164 1.180000e-114 424.0
40 TraesCS5B01G348200 chr7B 94.421 233 13 0 3244 3476 72074812 72075044 3.370000e-95 359.0
41 TraesCS5B01G348200 chr7B 95.062 81 4 0 3471 3551 44933005 44933085 1.030000e-25 128.0
42 TraesCS5B01G348200 chr6B 94.043 235 14 0 3242 3476 377703930 377703696 1.210000e-94 357.0
43 TraesCS5B01G348200 chr4D 91.071 56 5 0 679 734 471824406 471824461 3.800000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G348200 chr5B 529526203 529529753 3550 True 6558.000000 6558 100.000000 1 3551 1 chr5B.!!$R1 3550
1 TraesCS5B01G348200 chr5B 416545180 416546324 1144 True 361.366667 628 89.458333 1034 2585 3 chr5B.!!$R2 1551
2 TraesCS5B01G348200 chr5D 435886316 435888619 2303 True 874.000000 1522 91.442000 756 3181 3 chr5D.!!$R1 2425
3 TraesCS5B01G348200 chr5D 6114447 6115126 679 False 630.000000 630 83.688000 42 734 1 chr5D.!!$F1 692
4 TraesCS5B01G348200 chr5A 549803916 549805369 1453 True 1471.000000 1471 85.227000 1718 3181 1 chr5A.!!$R2 1463
5 TraesCS5B01G348200 chr5A 549782941 549784005 1064 True 1349.000000 1349 89.636000 2103 3163 1 chr5A.!!$R1 1060
6 TraesCS5B01G348200 chr5A 549792872 549794047 1175 True 394.333333 556 89.377667 791 2033 3 chr5A.!!$R5 1242
7 TraesCS5B01G348200 chr7A 628006108 628006753 645 False 691.000000 691 86.212000 86 734 1 chr7A.!!$F1 648
8 TraesCS5B01G348200 chr7D 206841559 206842217 658 False 676.000000 676 85.460000 42 703 1 chr7D.!!$F2 661
9 TraesCS5B01G348200 chr7D 523543146 523543770 624 True 645.000000 645 85.514000 106 737 1 chr7D.!!$R4 631
10 TraesCS5B01G348200 chr7D 178284575 178285270 695 False 632.000000 632 83.356000 1 708 1 chr7D.!!$F1 707
11 TraesCS5B01G348200 chr7D 8471991 8472588 597 True 614.000000 614 85.299000 99 710 1 chr7D.!!$R1 611
12 TraesCS5B01G348200 chr4A 158582991 158583623 632 False 664.000000 664 85.781000 1 637 1 chr4A.!!$F1 636
13 TraesCS5B01G348200 chr1B 289525451 289526101 650 False 651.000000 651 85.281000 99 734 1 chr1B.!!$F1 635
14 TraesCS5B01G348200 chr1B 530486409 530487042 633 True 366.500000 623 84.977500 1 623 2 chr1B.!!$R2 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 862 0.107017 CCCCCACGAGATCTGCAAAT 60.107 55.0 0.00 0.0 0.00 2.32 F
895 988 0.110486 TTTTCTCCCAGGGTGTCTGC 59.890 55.0 5.01 0.0 42.05 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 2090 1.270839 CCAGGTCTCCAATCGTGTGTT 60.271 52.381 0.0 0.0 0.0 3.32 R
2586 3024 1.933853 CAGTACATAGCCCTTCGTTGC 59.066 52.381 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.602517 AAATGTTCGTGAATTTGGAAAACAA 57.397 28.000 0.00 0.00 37.28 2.83
44 45 4.720649 TTGGAAAACAAATCACGGTTCA 57.279 36.364 0.00 0.00 35.79 3.18
45 46 4.720649 TGGAAAACAAATCACGGTTCAA 57.279 36.364 0.00 0.00 0.00 2.69
435 496 8.333186 GTTCGTGAGTTATAAAAAGTGTTCACT 58.667 33.333 0.00 0.00 33.41 3.41
451 513 8.574196 AGTGTTCACTGTTACAAAATAAATGC 57.426 30.769 4.58 0.00 0.00 3.56
456 518 9.624697 TTCACTGTTACAAAATAAATGCTCATC 57.375 29.630 0.00 0.00 0.00 2.92
475 537 6.678900 GCTCATCATTTTGGAGAATGTACACC 60.679 42.308 0.00 0.00 38.04 4.16
480 542 7.961351 TCATTTTGGAGAATGTACACCAATTT 58.039 30.769 14.45 4.98 39.42 1.82
486 548 8.415950 TGGAGAATGTACACCAATTTGTAAAT 57.584 30.769 0.00 0.00 33.73 1.40
755 848 3.536917 CGCTATGTCGCTCCCCCA 61.537 66.667 0.00 0.00 0.00 4.96
756 849 2.109181 GCTATGTCGCTCCCCCAC 59.891 66.667 0.00 0.00 0.00 4.61
757 850 2.417516 CTATGTCGCTCCCCCACG 59.582 66.667 0.00 0.00 0.00 4.94
758 851 2.043752 TATGTCGCTCCCCCACGA 60.044 61.111 0.00 0.00 35.62 4.35
759 852 2.076622 CTATGTCGCTCCCCCACGAG 62.077 65.000 0.00 0.00 39.30 4.18
760 853 2.561467 TATGTCGCTCCCCCACGAGA 62.561 60.000 0.00 0.00 39.30 4.04
761 854 3.148279 GTCGCTCCCCCACGAGAT 61.148 66.667 0.00 0.00 39.30 2.75
762 855 2.833582 TCGCTCCCCCACGAGATC 60.834 66.667 0.00 0.00 33.69 2.75
763 856 2.835431 CGCTCCCCCACGAGATCT 60.835 66.667 0.00 0.00 30.97 2.75
764 857 2.818132 GCTCCCCCACGAGATCTG 59.182 66.667 0.00 0.00 30.97 2.90
765 858 2.818132 CTCCCCCACGAGATCTGC 59.182 66.667 0.00 0.00 30.97 4.26
766 859 2.038813 TCCCCCACGAGATCTGCA 59.961 61.111 0.00 0.00 0.00 4.41
767 860 1.612146 TCCCCCACGAGATCTGCAA 60.612 57.895 0.00 0.00 0.00 4.08
768 861 1.198094 TCCCCCACGAGATCTGCAAA 61.198 55.000 0.00 0.00 0.00 3.68
769 862 0.107017 CCCCCACGAGATCTGCAAAT 60.107 55.000 0.00 0.00 0.00 2.32
772 865 1.667724 CCCACGAGATCTGCAAATGAC 59.332 52.381 0.00 0.00 0.00 3.06
777 870 1.329906 GAGATCTGCAAATGACTGGCG 59.670 52.381 0.00 0.00 0.00 5.69
829 922 2.582226 CGCACGCGAGCTAATCCA 60.582 61.111 25.38 0.00 42.83 3.41
833 926 2.419198 CGCGAGCTAATCCAGGCT 59.581 61.111 0.00 0.00 41.88 4.58
861 954 1.447314 GAGCCCGTACCGAAACCTG 60.447 63.158 0.00 0.00 0.00 4.00
890 983 1.003696 GGAGTCTTTTCTCCCAGGGTG 59.996 57.143 5.01 2.56 45.84 4.61
893 986 1.700186 GTCTTTTCTCCCAGGGTGTCT 59.300 52.381 5.01 0.00 0.00 3.41
894 987 1.699634 TCTTTTCTCCCAGGGTGTCTG 59.300 52.381 5.01 0.00 43.00 3.51
895 988 0.110486 TTTTCTCCCAGGGTGTCTGC 59.890 55.000 5.01 0.00 42.05 4.26
897 990 0.842030 TTCTCCCAGGGTGTCTGCAT 60.842 55.000 5.01 0.00 42.05 3.96
923 1027 2.360726 CCAAAGTGGCCCGGTACC 60.361 66.667 0.16 0.16 0.00 3.34
990 1102 4.335584 CGGAGAGAGATCGGCGGC 62.336 72.222 7.21 0.00 0.00 6.53
1010 1126 2.109431 GGCACATCATGTCGGCAAT 58.891 52.632 0.00 0.00 0.00 3.56
1069 1185 1.875514 CGTATGTATGCAGCAGCCATT 59.124 47.619 13.26 0.00 41.13 3.16
1155 1273 7.254932 GCCTCAGCGATCAGTTAGATTAAAAAT 60.255 37.037 0.00 0.00 37.00 1.82
1219 1338 5.880332 AGCATACCGTATTGTTCTGTTCAAT 59.120 36.000 0.00 0.00 38.72 2.57
1315 1624 4.036971 GCCGACTAATTAGCTTCTCAGAGA 59.963 45.833 12.54 0.00 0.00 3.10
1384 1709 8.437742 CACAACGGTTAAAGTAGTAGGTTAATG 58.562 37.037 0.00 0.00 0.00 1.90
1402 1727 4.533919 AATGGAACCGATTCATGCAAAA 57.466 36.364 0.00 0.00 36.46 2.44
1406 1731 4.946772 TGGAACCGATTCATGCAAAATCTA 59.053 37.500 17.93 0.00 36.46 1.98
1426 1751 8.552083 AATCTAAAATTCAATTGTCCCTTTGC 57.448 30.769 5.13 0.00 0.00 3.68
1466 1793 5.862323 TGTCGTTGATCAAGCTTTAGTACTC 59.138 40.000 8.80 0.00 0.00 2.59
1467 1794 5.288952 GTCGTTGATCAAGCTTTAGTACTCC 59.711 44.000 8.80 0.00 0.00 3.85
1468 1795 4.567159 CGTTGATCAAGCTTTAGTACTCCC 59.433 45.833 8.80 0.00 0.00 4.30
1471 1798 5.978814 TGATCAAGCTTTAGTACTCCCTTC 58.021 41.667 0.00 0.00 0.00 3.46
1472 1799 4.451629 TCAAGCTTTAGTACTCCCTTCG 57.548 45.455 0.00 0.00 0.00 3.79
1473 1800 3.830755 TCAAGCTTTAGTACTCCCTTCGT 59.169 43.478 0.00 0.00 0.00 3.85
1474 1801 4.282703 TCAAGCTTTAGTACTCCCTTCGTT 59.717 41.667 0.00 0.00 0.00 3.85
1475 1802 4.886496 AGCTTTAGTACTCCCTTCGTTT 57.114 40.909 0.00 0.00 0.00 3.60
1476 1803 5.224821 AGCTTTAGTACTCCCTTCGTTTT 57.775 39.130 0.00 0.00 0.00 2.43
1477 1804 5.618236 AGCTTTAGTACTCCCTTCGTTTTT 58.382 37.500 0.00 0.00 0.00 1.94
1500 1827 8.726870 TTTTTAGTCCGCATATAAGCTTTAGT 57.273 30.769 3.20 0.00 0.00 2.24
1501 1828 7.941795 TTTAGTCCGCATATAAGCTTTAGTC 57.058 36.000 3.20 0.00 0.00 2.59
1502 1829 5.531122 AGTCCGCATATAAGCTTTAGTCA 57.469 39.130 3.20 0.00 0.00 3.41
1503 1830 5.914033 AGTCCGCATATAAGCTTTAGTCAA 58.086 37.500 3.20 0.00 0.00 3.18
1504 1831 6.346096 AGTCCGCATATAAGCTTTAGTCAAA 58.654 36.000 3.20 0.00 0.00 2.69
1505 1832 6.480320 AGTCCGCATATAAGCTTTAGTCAAAG 59.520 38.462 3.20 0.00 43.46 2.77
1506 1833 6.258068 GTCCGCATATAAGCTTTAGTCAAAGT 59.742 38.462 3.20 0.00 42.71 2.66
1507 1834 6.479001 TCCGCATATAAGCTTTAGTCAAAGTC 59.521 38.462 3.20 0.00 42.71 3.01
1508 1835 6.257849 CCGCATATAAGCTTTAGTCAAAGTCA 59.742 38.462 3.20 0.00 42.71 3.41
1509 1836 7.201609 CCGCATATAAGCTTTAGTCAAAGTCAA 60.202 37.037 3.20 0.00 42.71 3.18
1510 1837 8.338259 CGCATATAAGCTTTAGTCAAAGTCAAT 58.662 33.333 3.20 0.00 42.71 2.57
1511 1838 9.657121 GCATATAAGCTTTAGTCAAAGTCAATC 57.343 33.333 3.20 0.00 42.71 2.67
1532 1859 9.832445 TCAATCTTTGTAGAGTTTGACTAACTT 57.168 29.630 3.78 0.00 47.00 2.66
1587 1914 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
1588 1915 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
1589 1916 9.569167 GAAATCAATATTATCAGATGCACCATG 57.431 33.333 0.00 0.00 0.00 3.66
1590 1917 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
1591 1918 8.873186 ATCAATATTATCAGATGCACCATGAA 57.127 30.769 0.00 0.00 0.00 2.57
1592 1919 8.694581 TCAATATTATCAGATGCACCATGAAA 57.305 30.769 0.00 0.00 0.00 2.69
1593 1920 8.570488 TCAATATTATCAGATGCACCATGAAAC 58.430 33.333 0.00 0.00 0.00 2.78
1594 1921 4.880886 TTATCAGATGCACCATGAAACG 57.119 40.909 0.00 0.00 0.00 3.60
1595 1922 2.183478 TCAGATGCACCATGAAACGT 57.817 45.000 0.00 0.00 0.00 3.99
1596 1923 3.326836 TCAGATGCACCATGAAACGTA 57.673 42.857 0.00 0.00 0.00 3.57
1597 1924 3.872696 TCAGATGCACCATGAAACGTAT 58.127 40.909 0.00 0.00 0.00 3.06
1598 1925 4.260985 TCAGATGCACCATGAAACGTATT 58.739 39.130 0.00 0.00 0.00 1.89
1599 1926 4.699735 TCAGATGCACCATGAAACGTATTT 59.300 37.500 0.00 0.00 0.00 1.40
1600 1927 5.182950 TCAGATGCACCATGAAACGTATTTT 59.817 36.000 0.00 0.00 0.00 1.82
1601 1928 5.512788 CAGATGCACCATGAAACGTATTTTC 59.487 40.000 0.00 0.00 43.63 2.29
1672 1999 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
1682 2009 6.190954 ACTTTGTGTAGTTTGACTTTGACC 57.809 37.500 0.00 0.00 0.00 4.02
1683 2010 5.708230 ACTTTGTGTAGTTTGACTTTGACCA 59.292 36.000 0.00 0.00 0.00 4.02
1684 2011 6.207810 ACTTTGTGTAGTTTGACTTTGACCAA 59.792 34.615 0.00 0.00 0.00 3.67
1685 2012 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
1686 2013 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
1687 2014 6.791303 TGTGTAGTTTGACTTTGACCAAATC 58.209 36.000 0.00 0.00 35.14 2.17
1688 2015 6.601613 TGTGTAGTTTGACTTTGACCAAATCT 59.398 34.615 0.00 0.00 35.14 2.40
1689 2016 7.122055 TGTGTAGTTTGACTTTGACCAAATCTT 59.878 33.333 0.00 0.00 35.14 2.40
1690 2017 7.644157 GTGTAGTTTGACTTTGACCAAATCTTC 59.356 37.037 0.00 0.00 35.14 2.87
1691 2018 7.556275 TGTAGTTTGACTTTGACCAAATCTTCT 59.444 33.333 0.00 0.00 35.14 2.85
1692 2019 9.052759 GTAGTTTGACTTTGACCAAATCTTCTA 57.947 33.333 0.00 0.00 35.14 2.10
1693 2020 8.697507 AGTTTGACTTTGACCAAATCTTCTAT 57.302 30.769 0.00 0.00 35.14 1.98
1694 2021 8.571336 AGTTTGACTTTGACCAAATCTTCTATG 58.429 33.333 0.00 0.00 35.14 2.23
1695 2022 6.500684 TGACTTTGACCAAATCTTCTATGC 57.499 37.500 0.00 0.00 0.00 3.14
1696 2023 5.122239 TGACTTTGACCAAATCTTCTATGCG 59.878 40.000 0.00 0.00 0.00 4.73
1697 2024 4.396166 ACTTTGACCAAATCTTCTATGCGG 59.604 41.667 0.00 0.00 0.00 5.69
1698 2025 3.904800 TGACCAAATCTTCTATGCGGA 57.095 42.857 0.00 0.00 0.00 5.54
1699 2026 3.797039 TGACCAAATCTTCTATGCGGAG 58.203 45.455 0.00 0.00 0.00 4.63
1700 2027 3.197766 TGACCAAATCTTCTATGCGGAGT 59.802 43.478 0.00 0.00 0.00 3.85
1701 2028 4.404394 TGACCAAATCTTCTATGCGGAGTA 59.596 41.667 0.00 0.00 0.00 2.59
1702 2029 5.105106 TGACCAAATCTTCTATGCGGAGTAA 60.105 40.000 0.00 0.00 0.00 2.24
1703 2030 5.741011 ACCAAATCTTCTATGCGGAGTAAA 58.259 37.500 0.00 0.00 0.00 2.01
1704 2031 6.177610 ACCAAATCTTCTATGCGGAGTAAAA 58.822 36.000 0.00 0.00 0.00 1.52
1705 2032 6.657541 ACCAAATCTTCTATGCGGAGTAAAAA 59.342 34.615 0.00 0.00 0.00 1.94
1706 2033 7.148239 ACCAAATCTTCTATGCGGAGTAAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
1707 2034 7.065803 CCAAATCTTCTATGCGGAGTAAAAAGA 59.934 37.037 0.00 0.00 0.00 2.52
1708 2035 8.450964 CAAATCTTCTATGCGGAGTAAAAAGAA 58.549 33.333 0.00 0.00 0.00 2.52
1709 2036 8.561738 AATCTTCTATGCGGAGTAAAAAGAAA 57.438 30.769 0.00 0.00 0.00 2.52
1710 2037 8.738645 ATCTTCTATGCGGAGTAAAAAGAAAT 57.261 30.769 0.00 0.00 0.00 2.17
1711 2038 7.974675 TCTTCTATGCGGAGTAAAAAGAAATG 58.025 34.615 0.00 0.00 0.00 2.32
1712 2039 6.677781 TCTATGCGGAGTAAAAAGAAATGG 57.322 37.500 0.00 0.00 0.00 3.16
1713 2040 6.411376 TCTATGCGGAGTAAAAAGAAATGGA 58.589 36.000 0.00 0.00 0.00 3.41
1714 2041 5.567138 ATGCGGAGTAAAAAGAAATGGAG 57.433 39.130 0.00 0.00 0.00 3.86
1715 2042 3.756434 TGCGGAGTAAAAAGAAATGGAGG 59.244 43.478 0.00 0.00 0.00 4.30
1716 2043 3.128764 GCGGAGTAAAAAGAAATGGAGGG 59.871 47.826 0.00 0.00 0.00 4.30
1717 2044 4.585879 CGGAGTAAAAAGAAATGGAGGGA 58.414 43.478 0.00 0.00 0.00 4.20
1718 2045 4.636206 CGGAGTAAAAAGAAATGGAGGGAG 59.364 45.833 0.00 0.00 0.00 4.30
1759 2090 8.177119 ACATCTTATTTCCTTTTGCAGTTACA 57.823 30.769 0.00 0.00 0.00 2.41
1813 2144 0.386352 TGGATCGTCGACGTCAACAC 60.386 55.000 34.40 20.26 40.80 3.32
1824 2155 3.061563 CGACGTCAACACAAACTCTTGAA 59.938 43.478 17.16 0.00 36.33 2.69
1845 2176 0.394216 AAATGACCGCTGCCTGCATA 60.394 50.000 0.00 0.00 43.06 3.14
2033 2364 8.110908 AGCTACCCAAATTAATAACTAACCACA 58.889 33.333 0.00 0.00 0.00 4.17
2081 2412 5.347907 ACGCCTTGACTTATTTCGAAGTTAG 59.652 40.000 0.00 1.51 39.79 2.34
2098 2430 7.750458 TCGAAGTTAGACATGCAATTTTGAATC 59.250 33.333 0.00 0.00 0.00 2.52
2137 2555 9.436957 CTGATTATATTCCTAATTAAGGCGTGT 57.563 33.333 0.00 0.00 46.10 4.49
2188 2608 1.814429 TGTGGAAGTGAAAGGGAGGA 58.186 50.000 0.00 0.00 0.00 3.71
2199 2619 4.457257 GTGAAAGGGAGGACTCAAATTCTG 59.543 45.833 1.32 0.00 0.00 3.02
2342 2762 2.637872 CCCCTTTGGAACAGAGTGACTA 59.362 50.000 0.00 0.00 39.09 2.59
2352 2772 6.096423 TGGAACAGAGTGACTATGGTATGTAC 59.904 42.308 12.25 0.00 0.00 2.90
2408 2832 5.092781 GGCCATCTTTAATGTTAACACACG 58.907 41.667 11.22 0.00 35.03 4.49
2442 2866 3.680786 GGCCCTTGTTTCGGGTGC 61.681 66.667 0.00 0.00 43.92 5.01
2586 3024 2.242926 TCACTCTGAGTGGGAAGTCTG 58.757 52.381 31.26 8.57 45.94 3.51
2587 3025 0.972883 ACTCTGAGTGGGAAGTCTGC 59.027 55.000 10.00 0.00 0.00 4.26
2609 3049 3.521947 ACGAAGGGCTATGTACTGTTC 57.478 47.619 0.00 0.00 0.00 3.18
2610 3050 2.167900 ACGAAGGGCTATGTACTGTTCC 59.832 50.000 0.00 0.00 0.00 3.62
2850 3291 0.755686 TGGTTGGGTTGTTGGAATGC 59.244 50.000 0.00 0.00 0.00 3.56
2903 3344 8.157476 AGTTTTGCTTTAGTTAGAAGGATGAGA 58.843 33.333 0.00 0.00 0.00 3.27
2921 3362 6.296894 GGATGAGAGACATTTCCCATCCATAT 60.297 42.308 15.22 0.00 45.58 1.78
2980 3421 9.638239 TCCAAAATAAATATTTCACAAGTCTGC 57.362 29.630 3.39 0.00 35.00 4.26
2992 3433 5.342433 TCACAAGTCTGCAAAATTGAACAG 58.658 37.500 7.29 0.00 0.00 3.16
3023 3464 9.346725 GACATTTCTCACCAGAATGTAATTTTC 57.653 33.333 1.39 0.00 38.50 2.29
3069 3510 8.770438 TGCACCTAATTTTCATGGTTATTTTC 57.230 30.769 0.00 0.00 0.00 2.29
3070 3511 8.370940 TGCACCTAATTTTCATGGTTATTTTCA 58.629 29.630 0.00 0.00 0.00 2.69
3073 3514 9.889128 ACCTAATTTTCATGGTTATTTTCATGG 57.111 29.630 0.00 0.00 40.63 3.66
3075 3516 9.603921 CTAATTTTCATGGTTATTTTCATGGCT 57.396 29.630 0.00 0.00 40.63 4.75
3080 3521 9.598517 TTTCATGGTTATTTTCATGGCTATTTC 57.401 29.630 0.00 0.00 40.63 2.17
3084 3532 8.359875 TGGTTATTTTCATGGCTATTTCTTGA 57.640 30.769 0.00 0.00 0.00 3.02
3086 3534 9.651913 GGTTATTTTCATGGCTATTTCTTGAAA 57.348 29.630 0.00 0.00 36.87 2.69
3145 3593 4.391155 TGGGTGTAAACGCAAGAGTTTAT 58.609 39.130 11.31 0.00 44.97 1.40
3150 3598 3.831715 AAACGCAAGAGTTTATCCAGC 57.168 42.857 0.00 0.00 41.93 4.85
3163 3611 4.744795 TTATCCAGCTTCAGTCTCCTTC 57.255 45.455 0.00 0.00 0.00 3.46
3164 3612 2.015456 TCCAGCTTCAGTCTCCTTCA 57.985 50.000 0.00 0.00 0.00 3.02
3211 3659 6.913873 TTTTGCGAATAGATACCACCTTAC 57.086 37.500 0.00 0.00 0.00 2.34
3212 3660 5.864418 TTGCGAATAGATACCACCTTACT 57.136 39.130 0.00 0.00 0.00 2.24
3213 3661 5.449107 TGCGAATAGATACCACCTTACTC 57.551 43.478 0.00 0.00 0.00 2.59
3214 3662 4.280174 TGCGAATAGATACCACCTTACTCC 59.720 45.833 0.00 0.00 0.00 3.85
3215 3663 4.523558 GCGAATAGATACCACCTTACTCCT 59.476 45.833 0.00 0.00 0.00 3.69
3216 3664 5.709164 GCGAATAGATACCACCTTACTCCTA 59.291 44.000 0.00 0.00 0.00 2.94
3217 3665 6.349197 GCGAATAGATACCACCTTACTCCTAC 60.349 46.154 0.00 0.00 0.00 3.18
3218 3666 6.941436 CGAATAGATACCACCTTACTCCTACT 59.059 42.308 0.00 0.00 0.00 2.57
3219 3667 7.094720 CGAATAGATACCACCTTACTCCTACTG 60.095 44.444 0.00 0.00 0.00 2.74
3220 3668 4.216708 AGATACCACCTTACTCCTACTGC 58.783 47.826 0.00 0.00 0.00 4.40
3221 3669 2.625282 ACCACCTTACTCCTACTGCT 57.375 50.000 0.00 0.00 0.00 4.24
3222 3670 3.752359 ACCACCTTACTCCTACTGCTA 57.248 47.619 0.00 0.00 0.00 3.49
3223 3671 3.633418 ACCACCTTACTCCTACTGCTAG 58.367 50.000 0.00 0.00 0.00 3.42
3224 3672 2.959707 CCACCTTACTCCTACTGCTAGG 59.040 54.545 0.00 0.00 41.19 3.02
3225 3673 3.627747 CCACCTTACTCCTACTGCTAGGT 60.628 52.174 0.00 0.00 40.71 3.08
3226 3674 4.024670 CACCTTACTCCTACTGCTAGGTT 58.975 47.826 0.00 0.00 40.71 3.50
3227 3675 4.466726 CACCTTACTCCTACTGCTAGGTTT 59.533 45.833 0.00 0.00 40.71 3.27
3228 3676 5.046520 CACCTTACTCCTACTGCTAGGTTTT 60.047 44.000 0.00 0.00 40.71 2.43
3229 3677 5.187381 ACCTTACTCCTACTGCTAGGTTTTC 59.813 44.000 0.00 0.00 40.71 2.29
3230 3678 5.422650 CCTTACTCCTACTGCTAGGTTTTCT 59.577 44.000 0.00 0.00 40.71 2.52
3231 3679 6.070710 CCTTACTCCTACTGCTAGGTTTTCTT 60.071 42.308 0.00 0.00 40.71 2.52
3232 3680 5.827326 ACTCCTACTGCTAGGTTTTCTTT 57.173 39.130 0.00 0.00 40.71 2.52
3233 3681 6.930068 ACTCCTACTGCTAGGTTTTCTTTA 57.070 37.500 0.00 0.00 40.71 1.85
3234 3682 6.699366 ACTCCTACTGCTAGGTTTTCTTTAC 58.301 40.000 0.00 0.00 40.71 2.01
3235 3683 6.497606 ACTCCTACTGCTAGGTTTTCTTTACT 59.502 38.462 0.00 0.00 40.71 2.24
3236 3684 6.698380 TCCTACTGCTAGGTTTTCTTTACTG 58.302 40.000 0.00 0.00 40.71 2.74
3237 3685 5.351740 CCTACTGCTAGGTTTTCTTTACTGC 59.648 44.000 0.00 0.00 35.57 4.40
3238 3686 3.746492 ACTGCTAGGTTTTCTTTACTGCG 59.254 43.478 0.00 0.00 0.00 5.18
3239 3687 3.735591 TGCTAGGTTTTCTTTACTGCGT 58.264 40.909 0.00 0.00 0.00 5.24
3240 3688 4.885413 TGCTAGGTTTTCTTTACTGCGTA 58.115 39.130 0.00 0.00 0.00 4.42
3241 3689 5.484715 TGCTAGGTTTTCTTTACTGCGTAT 58.515 37.500 0.00 0.00 0.00 3.06
3242 3690 6.632909 TGCTAGGTTTTCTTTACTGCGTATA 58.367 36.000 0.00 0.00 0.00 1.47
3243 3691 7.098477 TGCTAGGTTTTCTTTACTGCGTATAA 58.902 34.615 0.00 0.00 0.00 0.98
3244 3692 7.277098 TGCTAGGTTTTCTTTACTGCGTATAAG 59.723 37.037 0.00 0.00 0.00 1.73
3245 3693 6.980051 AGGTTTTCTTTACTGCGTATAAGG 57.020 37.500 0.00 0.00 0.00 2.69
3246 3694 5.353400 AGGTTTTCTTTACTGCGTATAAGGC 59.647 40.000 0.00 0.00 0.00 4.35
3247 3695 5.353400 GGTTTTCTTTACTGCGTATAAGGCT 59.647 40.000 0.00 0.00 0.00 4.58
3248 3696 6.536224 GGTTTTCTTTACTGCGTATAAGGCTA 59.464 38.462 0.00 0.00 0.00 3.93
3249 3697 7.254353 GGTTTTCTTTACTGCGTATAAGGCTAG 60.254 40.741 0.00 0.00 0.00 3.42
3250 3698 6.461110 TTCTTTACTGCGTATAAGGCTAGT 57.539 37.500 0.00 0.00 0.00 2.57
3251 3699 6.069684 TCTTTACTGCGTATAAGGCTAGTC 57.930 41.667 0.00 0.00 0.00 2.59
3252 3700 5.591472 TCTTTACTGCGTATAAGGCTAGTCA 59.409 40.000 0.00 0.00 0.00 3.41
3253 3701 6.264744 TCTTTACTGCGTATAAGGCTAGTCAT 59.735 38.462 0.00 0.00 0.00 3.06
3254 3702 7.446319 TCTTTACTGCGTATAAGGCTAGTCATA 59.554 37.037 0.00 0.00 0.00 2.15
3255 3703 5.630661 ACTGCGTATAAGGCTAGTCATAG 57.369 43.478 0.00 0.00 0.00 2.23
3256 3704 5.071370 ACTGCGTATAAGGCTAGTCATAGT 58.929 41.667 0.00 0.00 0.00 2.12
3257 3705 5.048643 ACTGCGTATAAGGCTAGTCATAGTG 60.049 44.000 0.00 0.00 0.00 2.74
3258 3706 4.825634 TGCGTATAAGGCTAGTCATAGTGT 59.174 41.667 0.00 0.00 0.00 3.55
3259 3707 5.154932 GCGTATAAGGCTAGTCATAGTGTG 58.845 45.833 0.00 0.00 0.00 3.82
3260 3708 5.048921 GCGTATAAGGCTAGTCATAGTGTGA 60.049 44.000 0.00 0.00 0.00 3.58
3261 3709 6.604012 CGTATAAGGCTAGTCATAGTGTGAG 58.396 44.000 0.00 0.00 37.56 3.51
3262 3710 6.205076 CGTATAAGGCTAGTCATAGTGTGAGT 59.795 42.308 0.00 2.54 43.00 3.41
3263 3711 7.387122 CGTATAAGGCTAGTCATAGTGTGAGTA 59.613 40.741 0.00 4.56 40.87 2.59
3264 3712 9.064706 GTATAAGGCTAGTCATAGTGTGAGTAA 57.935 37.037 5.99 0.00 41.13 2.24
3265 3713 5.838531 AGGCTAGTCATAGTGTGAGTAAC 57.161 43.478 5.99 2.03 41.13 2.50
3266 3714 5.262009 AGGCTAGTCATAGTGTGAGTAACA 58.738 41.667 5.99 0.00 41.13 2.41
3267 3715 5.894393 AGGCTAGTCATAGTGTGAGTAACAT 59.106 40.000 5.99 0.00 41.13 2.71
3268 3716 7.061054 AGGCTAGTCATAGTGTGAGTAACATA 58.939 38.462 5.99 0.00 41.13 2.29
3269 3717 7.560262 AGGCTAGTCATAGTGTGAGTAACATAA 59.440 37.037 5.99 0.00 41.13 1.90
3270 3718 7.863375 GGCTAGTCATAGTGTGAGTAACATAAG 59.137 40.741 5.99 0.00 41.13 1.73
3271 3719 8.407064 GCTAGTCATAGTGTGAGTAACATAAGT 58.593 37.037 5.99 0.00 41.13 2.24
3274 3722 9.463902 AGTCATAGTGTGAGTAACATAAGTAGT 57.536 33.333 0.00 0.00 41.97 2.73
3287 3735 9.976511 GTAACATAAGTAGTAACATAGATGCCA 57.023 33.333 0.00 0.00 0.00 4.92
3288 3736 8.888579 AACATAAGTAGTAACATAGATGCCAC 57.111 34.615 0.00 0.00 0.00 5.01
3289 3737 8.018537 ACATAAGTAGTAACATAGATGCCACA 57.981 34.615 0.00 0.00 0.00 4.17
3290 3738 8.651389 ACATAAGTAGTAACATAGATGCCACAT 58.349 33.333 0.00 0.00 0.00 3.21
3294 3742 7.155328 AGTAGTAACATAGATGCCACATAAGC 58.845 38.462 0.00 0.00 0.00 3.09
3295 3743 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
3296 3744 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
3297 3745 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
3298 3746 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
3299 3747 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
3329 3777 9.942850 TGATGTGTCATGTAATTAAAGAAGAGA 57.057 29.630 0.00 0.00 0.00 3.10
3371 3819 9.440773 ACATAATATGTTACCATCACATAGCAG 57.559 33.333 0.00 0.00 41.63 4.24
3372 3820 9.440773 CATAATATGTTACCATCACATAGCAGT 57.559 33.333 0.00 0.00 39.83 4.40
3374 3822 7.969536 ATATGTTACCATCACATAGCAGTTC 57.030 36.000 0.00 0.00 39.83 3.01
3375 3823 4.513442 TGTTACCATCACATAGCAGTTCC 58.487 43.478 0.00 0.00 0.00 3.62
3376 3824 2.717639 ACCATCACATAGCAGTTCCC 57.282 50.000 0.00 0.00 0.00 3.97
3377 3825 1.915489 ACCATCACATAGCAGTTCCCA 59.085 47.619 0.00 0.00 0.00 4.37
3378 3826 2.308570 ACCATCACATAGCAGTTCCCAA 59.691 45.455 0.00 0.00 0.00 4.12
3379 3827 3.053395 ACCATCACATAGCAGTTCCCAAT 60.053 43.478 0.00 0.00 0.00 3.16
3380 3828 4.165950 ACCATCACATAGCAGTTCCCAATA 59.834 41.667 0.00 0.00 0.00 1.90
3381 3829 4.516698 CCATCACATAGCAGTTCCCAATAC 59.483 45.833 0.00 0.00 0.00 1.89
3382 3830 4.835284 TCACATAGCAGTTCCCAATACA 57.165 40.909 0.00 0.00 0.00 2.29
3383 3831 5.172687 TCACATAGCAGTTCCCAATACAA 57.827 39.130 0.00 0.00 0.00 2.41
3384 3832 5.565509 TCACATAGCAGTTCCCAATACAAA 58.434 37.500 0.00 0.00 0.00 2.83
3385 3833 6.007076 TCACATAGCAGTTCCCAATACAAAA 58.993 36.000 0.00 0.00 0.00 2.44
3386 3834 6.663093 TCACATAGCAGTTCCCAATACAAAAT 59.337 34.615 0.00 0.00 0.00 1.82
3387 3835 7.831690 TCACATAGCAGTTCCCAATACAAAATA 59.168 33.333 0.00 0.00 0.00 1.40
3388 3836 8.465999 CACATAGCAGTTCCCAATACAAAATAA 58.534 33.333 0.00 0.00 0.00 1.40
3389 3837 8.686334 ACATAGCAGTTCCCAATACAAAATAAG 58.314 33.333 0.00 0.00 0.00 1.73
3390 3838 8.686334 CATAGCAGTTCCCAATACAAAATAAGT 58.314 33.333 0.00 0.00 0.00 2.24
3391 3839 7.158099 AGCAGTTCCCAATACAAAATAAGTC 57.842 36.000 0.00 0.00 0.00 3.01
3392 3840 6.948309 AGCAGTTCCCAATACAAAATAAGTCT 59.052 34.615 0.00 0.00 0.00 3.24
3393 3841 8.107095 AGCAGTTCCCAATACAAAATAAGTCTA 58.893 33.333 0.00 0.00 0.00 2.59
3394 3842 8.182227 GCAGTTCCCAATACAAAATAAGTCTAC 58.818 37.037 0.00 0.00 0.00 2.59
3395 3843 9.226606 CAGTTCCCAATACAAAATAAGTCTACA 57.773 33.333 0.00 0.00 0.00 2.74
3396 3844 9.802039 AGTTCCCAATACAAAATAAGTCTACAA 57.198 29.630 0.00 0.00 0.00 2.41
3399 3847 8.736244 TCCCAATACAAAATAAGTCTACAAAGC 58.264 33.333 0.00 0.00 0.00 3.51
3400 3848 8.519526 CCCAATACAAAATAAGTCTACAAAGCA 58.480 33.333 0.00 0.00 0.00 3.91
3401 3849 9.906660 CCAATACAAAATAAGTCTACAAAGCAA 57.093 29.630 0.00 0.00 0.00 3.91
3438 3886 7.528996 TGTATGTTAGTACACCTACAACACT 57.471 36.000 0.00 0.00 37.03 3.55
3439 3887 7.954835 TGTATGTTAGTACACCTACAACACTT 58.045 34.615 0.00 0.00 37.03 3.16
3440 3888 8.084073 TGTATGTTAGTACACCTACAACACTTC 58.916 37.037 0.00 0.00 37.03 3.01
3441 3889 5.846203 TGTTAGTACACCTACAACACTTCC 58.154 41.667 0.00 0.00 0.00 3.46
3442 3890 5.221501 TGTTAGTACACCTACAACACTTCCC 60.222 44.000 0.00 0.00 0.00 3.97
3443 3891 3.311091 AGTACACCTACAACACTTCCCA 58.689 45.455 0.00 0.00 0.00 4.37
3444 3892 2.632987 ACACCTACAACACTTCCCAC 57.367 50.000 0.00 0.00 0.00 4.61
3445 3893 2.124411 ACACCTACAACACTTCCCACT 58.876 47.619 0.00 0.00 0.00 4.00
3446 3894 3.311091 ACACCTACAACACTTCCCACTA 58.689 45.455 0.00 0.00 0.00 2.74
3447 3895 3.908103 ACACCTACAACACTTCCCACTAT 59.092 43.478 0.00 0.00 0.00 2.12
3448 3896 4.253685 CACCTACAACACTTCCCACTATG 58.746 47.826 0.00 0.00 0.00 2.23
3449 3897 4.020573 CACCTACAACACTTCCCACTATGA 60.021 45.833 0.00 0.00 0.00 2.15
3450 3898 4.595781 ACCTACAACACTTCCCACTATGAA 59.404 41.667 0.00 0.00 0.00 2.57
3451 3899 5.178797 CCTACAACACTTCCCACTATGAAG 58.821 45.833 0.00 0.00 43.82 3.02
3452 3900 4.021102 ACAACACTTCCCACTATGAAGG 57.979 45.455 5.16 0.00 42.79 3.46
3453 3901 3.394606 ACAACACTTCCCACTATGAAGGT 59.605 43.478 5.16 0.00 42.79 3.50
3454 3902 3.703001 ACACTTCCCACTATGAAGGTG 57.297 47.619 5.16 0.00 42.79 4.00
3477 3925 7.966339 TGGTAACATGGACTAGTAACATACT 57.034 36.000 11.08 5.64 46.17 2.12
3490 3938 4.942483 AGTAACATACTAGATCGGGATCGG 59.058 45.833 0.00 3.74 42.48 4.18
3491 3939 2.724454 ACATACTAGATCGGGATCGGG 58.276 52.381 0.00 3.44 42.48 5.14
3492 3940 1.405821 CATACTAGATCGGGATCGGGC 59.594 57.143 0.00 0.00 42.48 6.13
3493 3941 0.323178 TACTAGATCGGGATCGGGCC 60.323 60.000 0.00 0.00 42.48 5.80
3494 3942 1.304547 CTAGATCGGGATCGGGCCT 60.305 63.158 0.84 0.00 42.48 5.19
3495 3943 0.900647 CTAGATCGGGATCGGGCCTT 60.901 60.000 0.84 0.00 42.48 4.35
3496 3944 1.185618 TAGATCGGGATCGGGCCTTG 61.186 60.000 0.84 0.00 42.48 3.61
3497 3945 3.537206 GATCGGGATCGGGCCTTGG 62.537 68.421 0.84 0.00 36.95 3.61
3522 3970 2.484742 GGGTACCGGTCTCAACATTT 57.515 50.000 12.40 0.00 40.86 2.32
3523 3971 2.786777 GGGTACCGGTCTCAACATTTT 58.213 47.619 12.40 0.00 40.86 1.82
3524 3972 2.486592 GGGTACCGGTCTCAACATTTTG 59.513 50.000 12.40 0.00 40.86 2.44
3525 3973 2.486592 GGTACCGGTCTCAACATTTTGG 59.513 50.000 12.40 0.00 33.06 3.28
3526 3974 2.358322 ACCGGTCTCAACATTTTGGT 57.642 45.000 0.00 0.00 33.06 3.67
3527 3975 2.227194 ACCGGTCTCAACATTTTGGTC 58.773 47.619 0.00 0.00 33.06 4.02
3528 3976 2.226330 CCGGTCTCAACATTTTGGTCA 58.774 47.619 0.00 0.00 33.06 4.02
3529 3977 2.621055 CCGGTCTCAACATTTTGGTCAA 59.379 45.455 0.00 0.00 33.06 3.18
3530 3978 3.550030 CCGGTCTCAACATTTTGGTCAAC 60.550 47.826 0.00 0.00 33.06 3.18
3531 3979 3.550030 CGGTCTCAACATTTTGGTCAACC 60.550 47.826 0.00 0.00 33.06 3.77
3532 3980 3.383185 GGTCTCAACATTTTGGTCAACCA 59.617 43.478 0.00 0.00 45.94 3.67
3546 3994 6.575244 TGGTCAACCAGATAATGATAAGGT 57.425 37.500 0.00 0.00 42.01 3.50
3547 3995 6.356556 TGGTCAACCAGATAATGATAAGGTG 58.643 40.000 0.00 0.00 42.01 4.00
3548 3996 5.765182 GGTCAACCAGATAATGATAAGGTGG 59.235 44.000 0.00 0.00 35.64 4.61
3549 3997 6.357367 GTCAACCAGATAATGATAAGGTGGT 58.643 40.000 0.00 0.00 38.48 4.16
3550 3998 7.419750 GGTCAACCAGATAATGATAAGGTGGTA 60.420 40.741 0.00 0.00 35.76 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 95 9.906660 TGTGAATATTTTTCGAATTAGCAAACT 57.093 25.926 0.00 0.00 0.00 2.66
90 136 8.815141 TGTGAATGTTTTTCGAATCATGAATT 57.185 26.923 0.00 0.00 0.00 2.17
91 137 8.815141 TTGTGAATGTTTTTCGAATCATGAAT 57.185 26.923 0.00 0.00 0.00 2.57
96 142 8.640091 TCAAATTGTGAATGTTTTTCGAATCA 57.360 26.923 0.00 0.00 31.51 2.57
130 177 6.090129 CGACCATTTTGTTTGGATCGTTAAT 58.910 36.000 0.00 0.00 37.69 1.40
133 180 3.855524 GCGACCATTTTGTTTGGATCGTT 60.856 43.478 12.66 0.00 37.69 3.85
139 186 4.323336 CGAATTAGCGACCATTTTGTTTGG 59.677 41.667 0.00 0.00 40.26 3.28
144 191 6.683090 TTTTTCGAATTAGCGACCATTTTG 57.317 33.333 0.00 0.00 40.42 2.44
151 200 5.001267 CGTGAACATTTTTCGAATTAGCGAC 59.999 40.000 0.00 0.00 40.42 5.19
451 513 6.375174 TGGTGTACATTCTCCAAAATGATGAG 59.625 38.462 0.00 0.00 38.64 2.90
456 518 7.656948 ACAAATTGGTGTACATTCTCCAAAATG 59.343 33.333 16.88 18.25 41.88 2.32
685 778 4.277515 ACCCGTTTTAGGAAGGTTCTAC 57.722 45.455 0.00 0.00 0.00 2.59
697 790 0.554792 TTCACCCCCAACCCGTTTTA 59.445 50.000 0.00 0.00 0.00 1.52
738 831 3.536917 TGGGGGAGCGACATAGCG 61.537 66.667 0.00 0.00 43.00 4.26
739 832 2.109181 GTGGGGGAGCGACATAGC 59.891 66.667 0.00 0.00 37.41 2.97
740 833 2.076622 CTCGTGGGGGAGCGACATAG 62.077 65.000 0.00 0.00 33.33 2.23
741 834 2.043752 TCGTGGGGGAGCGACATA 60.044 61.111 0.00 0.00 31.76 2.29
742 835 3.461773 CTCGTGGGGGAGCGACAT 61.462 66.667 0.00 0.00 33.33 3.06
743 836 3.957435 ATCTCGTGGGGGAGCGACA 62.957 63.158 0.00 0.00 33.98 4.35
744 837 3.140225 GATCTCGTGGGGGAGCGAC 62.140 68.421 0.00 0.00 33.98 5.19
745 838 2.833582 GATCTCGTGGGGGAGCGA 60.834 66.667 0.00 0.00 33.98 4.93
746 839 2.835431 AGATCTCGTGGGGGAGCG 60.835 66.667 0.00 0.00 33.98 5.03
747 840 2.818132 CAGATCTCGTGGGGGAGC 59.182 66.667 0.00 0.00 33.98 4.70
748 841 1.617018 TTGCAGATCTCGTGGGGGAG 61.617 60.000 0.00 0.00 35.32 4.30
749 842 1.198094 TTTGCAGATCTCGTGGGGGA 61.198 55.000 0.00 0.00 0.00 4.81
750 843 0.107017 ATTTGCAGATCTCGTGGGGG 60.107 55.000 0.00 0.00 0.00 5.40
751 844 1.019673 CATTTGCAGATCTCGTGGGG 58.980 55.000 0.00 0.00 0.00 4.96
752 845 1.667724 GTCATTTGCAGATCTCGTGGG 59.332 52.381 0.00 0.00 0.00 4.61
753 846 2.350804 CAGTCATTTGCAGATCTCGTGG 59.649 50.000 0.00 0.00 0.00 4.94
754 847 2.350804 CCAGTCATTTGCAGATCTCGTG 59.649 50.000 0.00 0.00 0.00 4.35
755 848 2.625737 CCAGTCATTTGCAGATCTCGT 58.374 47.619 0.00 0.00 0.00 4.18
756 849 1.329906 GCCAGTCATTTGCAGATCTCG 59.670 52.381 0.00 0.00 0.00 4.04
757 850 1.329906 CGCCAGTCATTTGCAGATCTC 59.670 52.381 0.00 0.00 0.00 2.75
758 851 1.065926 TCGCCAGTCATTTGCAGATCT 60.066 47.619 0.00 0.00 0.00 2.75
759 852 1.063174 GTCGCCAGTCATTTGCAGATC 59.937 52.381 0.00 0.00 0.00 2.75
760 853 1.089920 GTCGCCAGTCATTTGCAGAT 58.910 50.000 0.00 0.00 0.00 2.90
761 854 0.250252 TGTCGCCAGTCATTTGCAGA 60.250 50.000 0.00 0.00 0.00 4.26
762 855 0.806868 ATGTCGCCAGTCATTTGCAG 59.193 50.000 0.00 0.00 0.00 4.41
763 856 0.804364 GATGTCGCCAGTCATTTGCA 59.196 50.000 0.00 0.00 0.00 4.08
764 857 0.247814 CGATGTCGCCAGTCATTTGC 60.248 55.000 0.00 0.00 0.00 3.68
765 858 3.883779 CGATGTCGCCAGTCATTTG 57.116 52.632 0.00 0.00 0.00 2.32
777 870 3.799755 GTGGCAACCCGCGATGTC 61.800 66.667 8.23 5.86 43.84 3.06
788 881 1.522668 CCAATTGACTCTCGTGGCAA 58.477 50.000 7.12 0.00 0.00 4.52
789 882 0.321564 CCCAATTGACTCTCGTGGCA 60.322 55.000 7.12 0.00 0.00 4.92
826 919 0.906756 CTCCCTGAACTGAGCCTGGA 60.907 60.000 0.00 0.00 0.00 3.86
829 922 3.397906 GCTCCCTGAACTGAGCCT 58.602 61.111 0.08 0.00 46.50 4.58
833 926 1.077805 TACGGGCTCCCTGAACTGA 59.922 57.895 3.11 0.00 33.36 3.41
861 954 3.867857 GAGAAAAGACTCCAGTCCATCC 58.132 50.000 2.96 0.00 45.85 3.51
884 977 6.061441 TGGTTTATTATATGCAGACACCCTG 58.939 40.000 0.00 0.00 45.67 4.45
886 979 6.952773 TTGGTTTATTATATGCAGACACCC 57.047 37.500 0.00 0.00 0.00 4.61
890 983 6.918022 GCCACTTTGGTTTATTATATGCAGAC 59.082 38.462 0.00 0.00 40.46 3.51
893 986 5.069781 GGGCCACTTTGGTTTATTATATGCA 59.930 40.000 4.39 0.00 40.46 3.96
894 987 5.538118 GGGCCACTTTGGTTTATTATATGC 58.462 41.667 4.39 0.00 40.46 3.14
895 988 5.278758 CCGGGCCACTTTGGTTTATTATATG 60.279 44.000 4.39 0.00 40.46 1.78
897 990 4.208746 CCGGGCCACTTTGGTTTATTATA 58.791 43.478 4.39 0.00 40.46 0.98
990 1102 3.576356 GCCGACATGATGTGCCGG 61.576 66.667 18.14 18.14 39.75 6.13
1007 1123 2.162921 CTGATAAGCGGCGCGGATTG 62.163 60.000 27.59 15.33 0.00 2.67
1010 1126 4.585526 CCTGATAAGCGGCGCGGA 62.586 66.667 27.59 18.86 0.00 5.54
1069 1185 5.893255 AGCATGCAGAAAATAAGTGGGATAA 59.107 36.000 21.98 0.00 0.00 1.75
1155 1273 7.503902 TGCAGTAAATAGATCTGAGCTCTCTAA 59.496 37.037 16.19 0.00 0.00 2.10
1171 1290 5.726397 ACGGTGATTAGTGTGCAGTAAATA 58.274 37.500 3.90 0.00 30.80 1.40
1384 1709 4.376340 AGATTTTGCATGAATCGGTTCC 57.624 40.909 5.84 0.00 38.29 3.62
1402 1727 7.820872 CAGCAAAGGGACAATTGAATTTTAGAT 59.179 33.333 13.59 0.00 30.59 1.98
1406 1731 4.516321 GCAGCAAAGGGACAATTGAATTTT 59.484 37.500 13.59 4.54 30.59 1.82
1415 1740 0.685785 TGGTTGCAGCAAAGGGACAA 60.686 50.000 10.11 0.00 0.00 3.18
1475 1802 8.726870 ACTAAAGCTTATATGCGGACTAAAAA 57.273 30.769 0.00 0.00 38.13 1.94
1476 1803 7.982919 TGACTAAAGCTTATATGCGGACTAAAA 59.017 33.333 0.00 0.00 38.13 1.52
1477 1804 7.494211 TGACTAAAGCTTATATGCGGACTAAA 58.506 34.615 0.00 0.00 38.13 1.85
1478 1805 7.046292 TGACTAAAGCTTATATGCGGACTAA 57.954 36.000 0.00 0.00 38.13 2.24
1479 1806 6.644248 TGACTAAAGCTTATATGCGGACTA 57.356 37.500 0.00 0.00 38.13 2.59
1480 1807 5.531122 TGACTAAAGCTTATATGCGGACT 57.469 39.130 0.00 0.00 38.13 3.85
1481 1808 6.258068 ACTTTGACTAAAGCTTATATGCGGAC 59.742 38.462 0.00 0.34 45.72 4.79
1482 1809 6.346096 ACTTTGACTAAAGCTTATATGCGGA 58.654 36.000 0.00 0.00 45.72 5.54
1483 1810 6.257849 TGACTTTGACTAAAGCTTATATGCGG 59.742 38.462 0.00 1.14 45.72 5.69
1484 1811 7.234187 TGACTTTGACTAAAGCTTATATGCG 57.766 36.000 0.00 0.00 45.72 4.73
1485 1812 9.657121 GATTGACTTTGACTAAAGCTTATATGC 57.343 33.333 0.00 2.42 45.72 3.14
1505 1832 9.262358 AGTTAGTCAAACTCTACAAAGATTGAC 57.738 33.333 15.20 15.20 45.64 3.18
1561 1888 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
1562 1889 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
1563 1890 9.569167 CATGGTGCATCTGATAATATTGATTTC 57.431 33.333 0.00 0.00 0.00 2.17
1564 1891 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
1565 1892 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
1566 1893 8.873186 TTCATGGTGCATCTGATAATATTGAT 57.127 30.769 0.00 0.00 0.00 2.57
1567 1894 8.570488 GTTTCATGGTGCATCTGATAATATTGA 58.430 33.333 0.00 0.00 0.00 2.57
1568 1895 7.536281 CGTTTCATGGTGCATCTGATAATATTG 59.464 37.037 0.00 0.00 0.00 1.90
1569 1896 7.229306 ACGTTTCATGGTGCATCTGATAATATT 59.771 33.333 0.00 0.00 0.00 1.28
1570 1897 6.712095 ACGTTTCATGGTGCATCTGATAATAT 59.288 34.615 0.00 0.00 0.00 1.28
1571 1898 6.054941 ACGTTTCATGGTGCATCTGATAATA 58.945 36.000 0.00 0.00 0.00 0.98
1572 1899 4.883585 ACGTTTCATGGTGCATCTGATAAT 59.116 37.500 0.00 0.00 0.00 1.28
1573 1900 4.260985 ACGTTTCATGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
1574 1901 3.872696 ACGTTTCATGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
1575 1902 2.715046 ACGTTTCATGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
1576 1903 2.183478 ACGTTTCATGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
1577 1904 4.621068 AATACGTTTCATGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
1578 1905 5.640732 GAAAATACGTTTCATGGTGCATCT 58.359 37.500 0.00 0.00 44.42 2.90
1579 1906 5.932021 GAAAATACGTTTCATGGTGCATC 57.068 39.130 0.00 0.00 44.42 3.91
1646 1973 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
1647 1974 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
1658 1985 6.207810 TGGTCAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
1659 1986 5.708230 TGGTCAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
1660 1987 6.189677 TGGTCAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 0.00 2.77
1661 1988 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
1662 1989 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
1663 1990 6.601613 AGATTTGGTCAAAGTCAAACTACACA 59.398 34.615 2.55 0.00 35.97 3.72
1664 1991 7.027778 AGATTTGGTCAAAGTCAAACTACAC 57.972 36.000 2.55 0.00 35.97 2.90
1665 1992 7.556275 AGAAGATTTGGTCAAAGTCAAACTACA 59.444 33.333 2.55 0.00 35.97 2.74
1666 1993 7.931275 AGAAGATTTGGTCAAAGTCAAACTAC 58.069 34.615 2.55 0.00 35.97 2.73
1667 1994 9.793259 ATAGAAGATTTGGTCAAAGTCAAACTA 57.207 29.630 2.55 0.00 35.97 2.24
1668 1995 8.571336 CATAGAAGATTTGGTCAAAGTCAAACT 58.429 33.333 2.55 0.00 35.97 2.66
1669 1996 7.327032 GCATAGAAGATTTGGTCAAAGTCAAAC 59.673 37.037 2.55 0.00 35.97 2.93
1670 1997 7.370383 GCATAGAAGATTTGGTCAAAGTCAAA 58.630 34.615 2.55 0.00 37.29 2.69
1671 1998 6.348458 CGCATAGAAGATTTGGTCAAAGTCAA 60.348 38.462 2.55 0.00 33.32 3.18
1672 1999 5.122239 CGCATAGAAGATTTGGTCAAAGTCA 59.878 40.000 2.55 0.00 33.32 3.41
1673 2000 5.447818 CCGCATAGAAGATTTGGTCAAAGTC 60.448 44.000 2.55 0.82 33.32 3.01
1674 2001 4.396166 CCGCATAGAAGATTTGGTCAAAGT 59.604 41.667 2.55 0.00 33.32 2.66
1675 2002 4.635765 TCCGCATAGAAGATTTGGTCAAAG 59.364 41.667 2.55 0.00 33.32 2.77
1676 2003 4.584874 TCCGCATAGAAGATTTGGTCAAA 58.415 39.130 0.00 0.00 34.46 2.69
1677 2004 4.191544 CTCCGCATAGAAGATTTGGTCAA 58.808 43.478 0.00 0.00 0.00 3.18
1678 2005 3.197766 ACTCCGCATAGAAGATTTGGTCA 59.802 43.478 0.00 0.00 0.00 4.02
1679 2006 3.798202 ACTCCGCATAGAAGATTTGGTC 58.202 45.455 0.00 0.00 0.00 4.02
1680 2007 3.914426 ACTCCGCATAGAAGATTTGGT 57.086 42.857 0.00 0.00 0.00 3.67
1681 2008 6.677781 TTTTACTCCGCATAGAAGATTTGG 57.322 37.500 0.00 0.00 0.00 3.28
1682 2009 7.974675 TCTTTTTACTCCGCATAGAAGATTTG 58.025 34.615 0.00 0.00 0.00 2.32
1683 2010 8.561738 TTCTTTTTACTCCGCATAGAAGATTT 57.438 30.769 0.00 0.00 0.00 2.17
1684 2011 8.561738 TTTCTTTTTACTCCGCATAGAAGATT 57.438 30.769 0.00 0.00 0.00 2.40
1685 2012 8.616076 CATTTCTTTTTACTCCGCATAGAAGAT 58.384 33.333 0.00 0.00 0.00 2.40
1686 2013 7.065803 CCATTTCTTTTTACTCCGCATAGAAGA 59.934 37.037 0.00 0.00 0.00 2.87
1687 2014 7.065803 TCCATTTCTTTTTACTCCGCATAGAAG 59.934 37.037 0.00 0.00 0.00 2.85
1688 2015 6.882140 TCCATTTCTTTTTACTCCGCATAGAA 59.118 34.615 0.00 0.00 0.00 2.10
1689 2016 6.411376 TCCATTTCTTTTTACTCCGCATAGA 58.589 36.000 0.00 0.00 0.00 1.98
1690 2017 6.238484 CCTCCATTTCTTTTTACTCCGCATAG 60.238 42.308 0.00 0.00 0.00 2.23
1691 2018 5.588648 CCTCCATTTCTTTTTACTCCGCATA 59.411 40.000 0.00 0.00 0.00 3.14
1692 2019 4.399303 CCTCCATTTCTTTTTACTCCGCAT 59.601 41.667 0.00 0.00 0.00 4.73
1693 2020 3.756434 CCTCCATTTCTTTTTACTCCGCA 59.244 43.478 0.00 0.00 0.00 5.69
1694 2021 3.128764 CCCTCCATTTCTTTTTACTCCGC 59.871 47.826 0.00 0.00 0.00 5.54
1695 2022 4.585879 TCCCTCCATTTCTTTTTACTCCG 58.414 43.478 0.00 0.00 0.00 4.63
1696 2023 5.571285 ACTCCCTCCATTTCTTTTTACTCC 58.429 41.667 0.00 0.00 0.00 3.85
1697 2024 6.313164 CGTACTCCCTCCATTTCTTTTTACTC 59.687 42.308 0.00 0.00 0.00 2.59
1698 2025 6.171213 CGTACTCCCTCCATTTCTTTTTACT 58.829 40.000 0.00 0.00 0.00 2.24
1699 2026 5.936372 ACGTACTCCCTCCATTTCTTTTTAC 59.064 40.000 0.00 0.00 0.00 2.01
1700 2027 6.117975 ACGTACTCCCTCCATTTCTTTTTA 57.882 37.500 0.00 0.00 0.00 1.52
1701 2028 4.981812 ACGTACTCCCTCCATTTCTTTTT 58.018 39.130 0.00 0.00 0.00 1.94
1702 2029 4.635699 ACGTACTCCCTCCATTTCTTTT 57.364 40.909 0.00 0.00 0.00 2.27
1703 2030 4.635699 AACGTACTCCCTCCATTTCTTT 57.364 40.909 0.00 0.00 0.00 2.52
1704 2031 5.750352 TTAACGTACTCCCTCCATTTCTT 57.250 39.130 0.00 0.00 0.00 2.52
1705 2032 5.952347 ATTAACGTACTCCCTCCATTTCT 57.048 39.130 0.00 0.00 0.00 2.52
1706 2033 8.672823 AATTATTAACGTACTCCCTCCATTTC 57.327 34.615 0.00 0.00 0.00 2.17
1707 2034 9.470399 AAAATTATTAACGTACTCCCTCCATTT 57.530 29.630 0.00 0.00 0.00 2.32
1709 2036 9.551734 GTAAAATTATTAACGTACTCCCTCCAT 57.448 33.333 0.00 0.00 0.00 3.41
1710 2037 8.538701 TGTAAAATTATTAACGTACTCCCTCCA 58.461 33.333 0.00 0.00 0.00 3.86
1711 2038 8.947055 TGTAAAATTATTAACGTACTCCCTCC 57.053 34.615 0.00 0.00 0.00 4.30
1734 2061 8.177119 TGTAACTGCAAAAGGAAATAAGATGT 57.823 30.769 0.00 0.00 0.00 3.06
1759 2090 1.270839 CCAGGTCTCCAATCGTGTGTT 60.271 52.381 0.00 0.00 0.00 3.32
1813 2144 4.023707 AGCGGTCATTTCTTCAAGAGTTTG 60.024 41.667 0.00 0.00 35.57 2.93
1824 2155 2.042831 GCAGGCAGCGGTCATTTCT 61.043 57.895 0.00 0.00 0.00 2.52
2027 2358 6.777580 AGTTATTCCTGTCAAAGAATGTGGTT 59.222 34.615 7.66 0.00 34.60 3.67
2033 2364 7.119262 CGTGGTAAGTTATTCCTGTCAAAGAAT 59.881 37.037 3.86 3.86 36.67 2.40
2036 2367 5.390567 GCGTGGTAAGTTATTCCTGTCAAAG 60.391 44.000 0.00 0.00 0.00 2.77
2040 2371 2.934553 GGCGTGGTAAGTTATTCCTGTC 59.065 50.000 0.00 0.00 0.00 3.51
2137 2555 5.472478 GCTCATCTGGCTGAAATATCAATGA 59.528 40.000 0.00 0.00 34.49 2.57
2188 2608 3.126001 TGAGCGTTCCAGAATTTGAGT 57.874 42.857 0.00 0.00 0.00 3.41
2199 2619 3.001736 GCAGATATTCTGTTGAGCGTTCC 59.998 47.826 6.40 0.00 45.94 3.62
2235 2655 5.657745 TGATATGCCATCCATTTGTTTCACT 59.342 36.000 0.00 0.00 35.34 3.41
2352 2772 8.620116 AATGGAAGGGAAAAACAATACAAATG 57.380 30.769 0.00 0.00 0.00 2.32
2408 2832 5.921962 AGGGCCTTCAAAGATATCAAAAC 57.078 39.130 0.00 0.00 0.00 2.43
2442 2866 4.038642 GGGTGCTTAAGGTCTCTATCTCTG 59.961 50.000 4.29 0.00 0.00 3.35
2586 3024 1.933853 CAGTACATAGCCCTTCGTTGC 59.066 52.381 0.00 0.00 0.00 4.17
2587 3025 3.247006 ACAGTACATAGCCCTTCGTTG 57.753 47.619 0.00 0.00 0.00 4.10
2609 3049 5.323371 TGTGTCTCTTTTTCCAAAACTGG 57.677 39.130 0.00 0.00 0.00 4.00
2610 3050 6.868339 AGTTTGTGTCTCTTTTTCCAAAACTG 59.132 34.615 0.00 0.00 0.00 3.16
2668 3108 6.645415 AGTTCATACACAACTCTAGAAAACGG 59.355 38.462 0.00 0.00 27.00 4.44
2675 3115 7.976175 TGCTTCATAGTTCATACACAACTCTAG 59.024 37.037 0.00 0.00 35.63 2.43
2752 3192 9.101971 GAAAATAAATGGTCAAAACAATTTCGC 57.898 29.630 0.00 0.00 38.17 4.70
2815 3256 2.977169 CAACCAAACGATTAAAGTGGCG 59.023 45.455 0.00 0.00 32.27 5.69
2824 3265 2.159028 CCAACAACCCAACCAAACGATT 60.159 45.455 0.00 0.00 0.00 3.34
2903 3344 5.015497 TGGCATATATGGATGGGAAATGTCT 59.985 40.000 14.51 0.00 0.00 3.41
2921 3362 6.278172 TGTTTATGTTGCTCAAATGGCATA 57.722 33.333 0.00 0.00 39.54 3.14
2965 3406 7.978414 TGTTCAATTTTGCAGACTTGTGAAATA 59.022 29.630 7.13 0.00 0.00 1.40
2980 3421 8.752766 AGAAATGTCTATGCTGTTCAATTTTG 57.247 30.769 0.00 0.00 29.93 2.44
2992 3433 5.587844 ACATTCTGGTGAGAAATGTCTATGC 59.412 40.000 0.00 0.00 41.64 3.14
3023 3464 4.201891 GCAGTGAATGATGCTCTGTTAAGG 60.202 45.833 4.56 0.00 39.38 2.69
3069 3510 8.991243 TTCTCAATTTTCAAGAAATAGCCATG 57.009 30.769 0.00 0.00 0.00 3.66
3070 3511 7.763071 GCTTCTCAATTTTCAAGAAATAGCCAT 59.237 33.333 0.00 0.00 0.00 4.40
3073 3514 6.237411 GCGCTTCTCAATTTTCAAGAAATAGC 60.237 38.462 0.00 0.00 0.00 2.97
3075 3516 6.676950 TGCGCTTCTCAATTTTCAAGAAATA 58.323 32.000 9.73 0.00 0.00 1.40
3078 3519 4.036734 ACTGCGCTTCTCAATTTTCAAGAA 59.963 37.500 9.73 0.00 0.00 2.52
3080 3521 3.667261 CACTGCGCTTCTCAATTTTCAAG 59.333 43.478 9.73 0.00 0.00 3.02
3084 3532 2.358898 ACACACTGCGCTTCTCAATTTT 59.641 40.909 9.73 0.00 0.00 1.82
3086 3534 1.597742 ACACACTGCGCTTCTCAATT 58.402 45.000 9.73 0.00 0.00 2.32
3089 3537 1.732405 CGATACACACTGCGCTTCTCA 60.732 52.381 9.73 0.00 0.00 3.27
3145 3593 2.015456 TGAAGGAGACTGAAGCTGGA 57.985 50.000 0.00 0.00 42.68 3.86
3150 3598 3.580458 TCCCTCTTTGAAGGAGACTGAAG 59.420 47.826 5.83 0.00 42.68 3.02
3187 3635 7.107542 AGTAAGGTGGTATCTATTCGCAAAAA 58.892 34.615 0.00 0.00 0.00 1.94
3188 3636 6.646267 AGTAAGGTGGTATCTATTCGCAAAA 58.354 36.000 0.00 0.00 0.00 2.44
3189 3637 6.229936 AGTAAGGTGGTATCTATTCGCAAA 57.770 37.500 0.00 0.00 0.00 3.68
3190 3638 5.221382 GGAGTAAGGTGGTATCTATTCGCAA 60.221 44.000 0.00 0.00 0.00 4.85
3191 3639 4.280174 GGAGTAAGGTGGTATCTATTCGCA 59.720 45.833 0.00 0.00 0.00 5.10
3192 3640 4.523558 AGGAGTAAGGTGGTATCTATTCGC 59.476 45.833 0.00 0.00 0.00 4.70
3193 3641 6.941436 AGTAGGAGTAAGGTGGTATCTATTCG 59.059 42.308 0.00 0.00 0.00 3.34
3194 3642 7.309316 GCAGTAGGAGTAAGGTGGTATCTATTC 60.309 44.444 0.00 0.00 0.00 1.75
3195 3643 6.494146 GCAGTAGGAGTAAGGTGGTATCTATT 59.506 42.308 0.00 0.00 0.00 1.73
3196 3644 6.011481 GCAGTAGGAGTAAGGTGGTATCTAT 58.989 44.000 0.00 0.00 0.00 1.98
3197 3645 5.133999 AGCAGTAGGAGTAAGGTGGTATCTA 59.866 44.000 0.00 0.00 0.00 1.98
3198 3646 4.079096 AGCAGTAGGAGTAAGGTGGTATCT 60.079 45.833 0.00 0.00 0.00 1.98
3199 3647 4.216708 AGCAGTAGGAGTAAGGTGGTATC 58.783 47.826 0.00 0.00 0.00 2.24
3200 3648 4.267341 AGCAGTAGGAGTAAGGTGGTAT 57.733 45.455 0.00 0.00 0.00 2.73
3201 3649 3.752359 AGCAGTAGGAGTAAGGTGGTA 57.248 47.619 0.00 0.00 0.00 3.25
3202 3650 2.625282 AGCAGTAGGAGTAAGGTGGT 57.375 50.000 0.00 0.00 0.00 4.16
3214 3662 5.062308 CGCAGTAAAGAAAACCTAGCAGTAG 59.938 44.000 0.00 0.00 0.00 2.57
3215 3663 4.927425 CGCAGTAAAGAAAACCTAGCAGTA 59.073 41.667 0.00 0.00 0.00 2.74
3216 3664 3.746492 CGCAGTAAAGAAAACCTAGCAGT 59.254 43.478 0.00 0.00 0.00 4.40
3217 3665 3.746492 ACGCAGTAAAGAAAACCTAGCAG 59.254 43.478 0.00 0.00 41.94 4.24
3218 3666 3.735591 ACGCAGTAAAGAAAACCTAGCA 58.264 40.909 0.00 0.00 41.94 3.49
3234 3682 5.048643 ACACTATGACTAGCCTTATACGCAG 60.049 44.000 0.00 0.00 0.00 5.18
3235 3683 4.825634 ACACTATGACTAGCCTTATACGCA 59.174 41.667 0.00 0.00 0.00 5.24
3236 3684 5.048921 TCACACTATGACTAGCCTTATACGC 60.049 44.000 0.00 0.00 29.99 4.42
3237 3685 6.205076 ACTCACACTATGACTAGCCTTATACG 59.795 42.308 0.00 0.00 32.37 3.06
3238 3686 7.513371 ACTCACACTATGACTAGCCTTATAC 57.487 40.000 0.00 0.00 32.37 1.47
3239 3687 9.064706 GTTACTCACACTATGACTAGCCTTATA 57.935 37.037 0.00 0.00 32.37 0.98
3240 3688 7.560262 TGTTACTCACACTATGACTAGCCTTAT 59.440 37.037 0.00 0.00 32.37 1.73
3241 3689 6.888088 TGTTACTCACACTATGACTAGCCTTA 59.112 38.462 0.00 0.00 32.37 2.69
3242 3690 5.715279 TGTTACTCACACTATGACTAGCCTT 59.285 40.000 0.00 0.00 32.37 4.35
3243 3691 5.262009 TGTTACTCACACTATGACTAGCCT 58.738 41.667 0.00 0.00 32.37 4.58
3244 3692 5.578005 TGTTACTCACACTATGACTAGCC 57.422 43.478 0.00 0.00 32.37 3.93
3245 3693 8.407064 ACTTATGTTACTCACACTATGACTAGC 58.593 37.037 0.00 0.00 38.61 3.42
3248 3696 9.463902 ACTACTTATGTTACTCACACTATGACT 57.536 33.333 0.00 0.00 38.61 3.41
3261 3709 9.976511 TGGCATCTATGTTACTACTTATGTTAC 57.023 33.333 0.00 0.00 0.00 2.50
3262 3710 9.976511 GTGGCATCTATGTTACTACTTATGTTA 57.023 33.333 0.00 0.00 0.00 2.41
3263 3711 8.482943 TGTGGCATCTATGTTACTACTTATGTT 58.517 33.333 0.00 0.00 0.00 2.71
3264 3712 8.018537 TGTGGCATCTATGTTACTACTTATGT 57.981 34.615 0.00 0.00 0.00 2.29
3268 3716 7.657761 GCTTATGTGGCATCTATGTTACTACTT 59.342 37.037 0.00 0.00 0.00 2.24
3269 3717 7.155328 GCTTATGTGGCATCTATGTTACTACT 58.845 38.462 0.00 0.00 0.00 2.57
3270 3718 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
3271 3719 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
3272 3720 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
3273 3721 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
3274 3722 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
3275 3723 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
3276 3724 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
3303 3751 9.942850 TCTCTTCTTTAATTACATGACACATCA 57.057 29.630 0.00 0.00 39.83 3.07
3354 3802 3.877508 GGGAACTGCTATGTGATGGTAAC 59.122 47.826 0.00 0.00 0.00 2.50
3355 3803 3.521531 TGGGAACTGCTATGTGATGGTAA 59.478 43.478 0.00 0.00 0.00 2.85
3356 3804 3.111484 TGGGAACTGCTATGTGATGGTA 58.889 45.455 0.00 0.00 0.00 3.25
3357 3805 1.915489 TGGGAACTGCTATGTGATGGT 59.085 47.619 0.00 0.00 0.00 3.55
3358 3806 2.715749 TGGGAACTGCTATGTGATGG 57.284 50.000 0.00 0.00 0.00 3.51
3359 3807 5.125356 TGTATTGGGAACTGCTATGTGATG 58.875 41.667 0.00 0.00 0.00 3.07
3360 3808 5.372343 TGTATTGGGAACTGCTATGTGAT 57.628 39.130 0.00 0.00 0.00 3.06
3361 3809 4.835284 TGTATTGGGAACTGCTATGTGA 57.165 40.909 0.00 0.00 0.00 3.58
3362 3810 5.895636 TTTGTATTGGGAACTGCTATGTG 57.104 39.130 0.00 0.00 0.00 3.21
3363 3811 8.588290 TTATTTTGTATTGGGAACTGCTATGT 57.412 30.769 0.00 0.00 0.00 2.29
3364 3812 8.686334 ACTTATTTTGTATTGGGAACTGCTATG 58.314 33.333 0.00 0.00 0.00 2.23
3365 3813 8.823220 ACTTATTTTGTATTGGGAACTGCTAT 57.177 30.769 0.00 0.00 0.00 2.97
3366 3814 8.107095 AGACTTATTTTGTATTGGGAACTGCTA 58.893 33.333 0.00 0.00 0.00 3.49
3367 3815 6.948309 AGACTTATTTTGTATTGGGAACTGCT 59.052 34.615 0.00 0.00 0.00 4.24
3368 3816 7.158099 AGACTTATTTTGTATTGGGAACTGC 57.842 36.000 0.00 0.00 0.00 4.40
3369 3817 9.226606 TGTAGACTTATTTTGTATTGGGAACTG 57.773 33.333 0.00 0.00 0.00 3.16
3370 3818 9.802039 TTGTAGACTTATTTTGTATTGGGAACT 57.198 29.630 0.00 0.00 0.00 3.01
3373 3821 8.736244 GCTTTGTAGACTTATTTTGTATTGGGA 58.264 33.333 0.00 0.00 0.00 4.37
3374 3822 8.519526 TGCTTTGTAGACTTATTTTGTATTGGG 58.480 33.333 0.00 0.00 0.00 4.12
3375 3823 9.906660 TTGCTTTGTAGACTTATTTTGTATTGG 57.093 29.630 0.00 0.00 0.00 3.16
3412 3860 9.246670 AGTGTTGTAGGTGTACTAACATACATA 57.753 33.333 10.49 3.04 44.19 2.29
3413 3861 8.130671 AGTGTTGTAGGTGTACTAACATACAT 57.869 34.615 10.49 0.00 44.19 2.29
3414 3862 7.528996 AGTGTTGTAGGTGTACTAACATACA 57.471 36.000 6.72 6.72 43.41 2.29
3415 3863 7.543520 GGAAGTGTTGTAGGTGTACTAACATAC 59.456 40.741 0.00 0.00 38.08 2.39
3416 3864 7.309990 GGGAAGTGTTGTAGGTGTACTAACATA 60.310 40.741 0.00 0.00 38.08 2.29
3417 3865 6.461640 GGAAGTGTTGTAGGTGTACTAACAT 58.538 40.000 0.00 0.00 38.08 2.71
3418 3866 5.221501 GGGAAGTGTTGTAGGTGTACTAACA 60.222 44.000 0.00 0.00 32.48 2.41
3419 3867 5.221501 TGGGAAGTGTTGTAGGTGTACTAAC 60.222 44.000 0.00 0.00 32.37 2.34
3420 3868 4.900652 TGGGAAGTGTTGTAGGTGTACTAA 59.099 41.667 0.00 0.00 32.37 2.24
3421 3869 4.281688 GTGGGAAGTGTTGTAGGTGTACTA 59.718 45.833 0.00 0.00 0.00 1.82
3422 3870 3.070590 GTGGGAAGTGTTGTAGGTGTACT 59.929 47.826 0.00 0.00 0.00 2.73
3423 3871 3.070590 AGTGGGAAGTGTTGTAGGTGTAC 59.929 47.826 0.00 0.00 0.00 2.90
3424 3872 3.311091 AGTGGGAAGTGTTGTAGGTGTA 58.689 45.455 0.00 0.00 0.00 2.90
3425 3873 2.124411 AGTGGGAAGTGTTGTAGGTGT 58.876 47.619 0.00 0.00 0.00 4.16
3426 3874 2.930826 AGTGGGAAGTGTTGTAGGTG 57.069 50.000 0.00 0.00 0.00 4.00
3427 3875 4.164981 TCATAGTGGGAAGTGTTGTAGGT 58.835 43.478 0.00 0.00 0.00 3.08
3428 3876 4.819105 TCATAGTGGGAAGTGTTGTAGG 57.181 45.455 0.00 0.00 0.00 3.18
3429 3877 5.178797 CCTTCATAGTGGGAAGTGTTGTAG 58.821 45.833 0.00 0.00 40.06 2.74
3430 3878 4.595781 ACCTTCATAGTGGGAAGTGTTGTA 59.404 41.667 0.00 0.00 40.06 2.41
3431 3879 3.394606 ACCTTCATAGTGGGAAGTGTTGT 59.605 43.478 0.00 0.00 40.06 3.32
3432 3880 3.753272 CACCTTCATAGTGGGAAGTGTTG 59.247 47.826 0.00 0.00 40.06 3.33
3433 3881 4.021102 CACCTTCATAGTGGGAAGTGTT 57.979 45.455 0.00 0.00 40.06 3.32
3434 3882 3.703001 CACCTTCATAGTGGGAAGTGT 57.297 47.619 0.00 0.00 40.06 3.55
3442 3890 4.876107 GTCCATGTTACCACCTTCATAGTG 59.124 45.833 0.00 0.00 34.91 2.74
3443 3891 4.783227 AGTCCATGTTACCACCTTCATAGT 59.217 41.667 0.00 0.00 0.00 2.12
3444 3892 5.359194 AGTCCATGTTACCACCTTCATAG 57.641 43.478 0.00 0.00 0.00 2.23
3445 3893 5.962031 ACTAGTCCATGTTACCACCTTCATA 59.038 40.000 0.00 0.00 0.00 2.15
3446 3894 4.783227 ACTAGTCCATGTTACCACCTTCAT 59.217 41.667 0.00 0.00 0.00 2.57
3447 3895 4.164981 ACTAGTCCATGTTACCACCTTCA 58.835 43.478 0.00 0.00 0.00 3.02
3448 3896 4.820894 ACTAGTCCATGTTACCACCTTC 57.179 45.455 0.00 0.00 0.00 3.46
3449 3897 5.544948 TGTTACTAGTCCATGTTACCACCTT 59.455 40.000 0.00 0.00 0.00 3.50
3450 3898 5.088730 TGTTACTAGTCCATGTTACCACCT 58.911 41.667 0.00 0.00 0.00 4.00
3451 3899 5.410355 TGTTACTAGTCCATGTTACCACC 57.590 43.478 0.00 0.00 0.00 4.61
3452 3900 7.779073 AGTATGTTACTAGTCCATGTTACCAC 58.221 38.462 14.97 6.84 37.23 4.16
3453 3901 7.966339 AGTATGTTACTAGTCCATGTTACCA 57.034 36.000 14.97 0.00 37.23 3.25
3463 3911 7.010367 CGATCCCGATCTAGTATGTTACTAGTC 59.990 44.444 17.07 13.54 46.26 2.59
3464 3912 6.817641 CGATCCCGATCTAGTATGTTACTAGT 59.182 42.308 17.07 0.00 46.26 2.57
3465 3913 6.258287 CCGATCCCGATCTAGTATGTTACTAG 59.742 46.154 13.24 13.24 46.83 2.57
3466 3914 6.111382 CCGATCCCGATCTAGTATGTTACTA 58.889 44.000 3.35 0.00 37.87 1.82
3467 3915 4.942483 CCGATCCCGATCTAGTATGTTACT 59.058 45.833 3.35 0.00 39.36 2.24
3468 3916 4.096081 CCCGATCCCGATCTAGTATGTTAC 59.904 50.000 3.35 0.00 38.22 2.50
3469 3917 4.267536 CCCGATCCCGATCTAGTATGTTA 58.732 47.826 3.35 0.00 38.22 2.41
3470 3918 3.090037 CCCGATCCCGATCTAGTATGTT 58.910 50.000 3.35 0.00 38.22 2.71
3471 3919 2.724454 CCCGATCCCGATCTAGTATGT 58.276 52.381 3.35 0.00 38.22 2.29
3472 3920 1.405821 GCCCGATCCCGATCTAGTATG 59.594 57.143 3.35 0.00 38.22 2.39
3473 3921 1.685491 GGCCCGATCCCGATCTAGTAT 60.685 57.143 0.00 0.00 38.22 2.12
3474 3922 0.323178 GGCCCGATCCCGATCTAGTA 60.323 60.000 0.00 0.00 38.22 1.82
3475 3923 1.606889 GGCCCGATCCCGATCTAGT 60.607 63.158 0.00 0.00 38.22 2.57
3476 3924 0.900647 AAGGCCCGATCCCGATCTAG 60.901 60.000 0.00 0.00 38.22 2.43
3477 3925 1.155390 AAGGCCCGATCCCGATCTA 59.845 57.895 0.00 0.00 38.22 1.98
3478 3926 2.122813 AAGGCCCGATCCCGATCT 60.123 61.111 0.00 0.00 38.22 2.75
3479 3927 2.031163 CAAGGCCCGATCCCGATC 59.969 66.667 0.00 0.00 38.22 3.69
3480 3928 3.560251 CCAAGGCCCGATCCCGAT 61.560 66.667 0.00 0.00 38.22 4.18
3498 3946 4.487412 GAGACCGGTACCCACGCG 62.487 72.222 7.34 3.53 0.00 6.01
3499 3947 2.934570 TTGAGACCGGTACCCACGC 61.935 63.158 7.34 0.00 0.00 5.34
3500 3948 1.080298 GTTGAGACCGGTACCCACG 60.080 63.158 7.34 0.00 0.00 4.94
3501 3949 0.611714 ATGTTGAGACCGGTACCCAC 59.388 55.000 7.34 4.96 0.00 4.61
3502 3950 1.354101 AATGTTGAGACCGGTACCCA 58.646 50.000 7.34 2.45 0.00 4.51
3503 3951 2.484742 AAATGTTGAGACCGGTACCC 57.515 50.000 7.34 0.00 0.00 3.69
3504 3952 2.486592 CCAAAATGTTGAGACCGGTACC 59.513 50.000 7.34 0.16 36.83 3.34
3505 3953 3.143728 ACCAAAATGTTGAGACCGGTAC 58.856 45.455 7.34 1.70 36.83 3.34
3506 3954 3.181453 TGACCAAAATGTTGAGACCGGTA 60.181 43.478 7.34 0.00 36.83 4.02
3507 3955 2.227194 GACCAAAATGTTGAGACCGGT 58.773 47.619 6.92 6.92 36.83 5.28
3508 3956 2.226330 TGACCAAAATGTTGAGACCGG 58.774 47.619 0.00 0.00 36.83 5.28
3509 3957 3.550030 GGTTGACCAAAATGTTGAGACCG 60.550 47.826 0.00 0.00 36.83 4.79
3510 3958 3.383185 TGGTTGACCAAAATGTTGAGACC 59.617 43.478 0.00 0.59 44.35 3.85
3511 3959 4.338118 TCTGGTTGACCAAAATGTTGAGAC 59.662 41.667 4.18 0.00 46.97 3.36
3512 3960 4.531854 TCTGGTTGACCAAAATGTTGAGA 58.468 39.130 4.18 0.00 46.97 3.27
3513 3961 4.916983 TCTGGTTGACCAAAATGTTGAG 57.083 40.909 4.18 0.00 46.97 3.02
3514 3962 6.968263 TTATCTGGTTGACCAAAATGTTGA 57.032 33.333 4.18 0.00 46.97 3.18
3515 3963 7.377398 TCATTATCTGGTTGACCAAAATGTTG 58.623 34.615 20.49 12.66 46.97 3.33
3516 3964 7.537596 TCATTATCTGGTTGACCAAAATGTT 57.462 32.000 20.49 5.03 46.97 2.71
3517 3965 7.722949 ATCATTATCTGGTTGACCAAAATGT 57.277 32.000 20.49 12.20 46.97 2.71
3518 3966 9.740239 CTTATCATTATCTGGTTGACCAAAATG 57.260 33.333 17.81 17.81 46.97 2.32
3519 3967 8.917088 CCTTATCATTATCTGGTTGACCAAAAT 58.083 33.333 4.18 4.02 46.97 1.82
3520 3968 7.893302 ACCTTATCATTATCTGGTTGACCAAAA 59.107 33.333 4.18 0.25 46.97 2.44
3521 3969 7.339212 CACCTTATCATTATCTGGTTGACCAAA 59.661 37.037 4.18 0.00 46.97 3.28
3522 3970 6.828273 CACCTTATCATTATCTGGTTGACCAA 59.172 38.462 4.18 0.00 46.97 3.67
3523 3971 6.356556 CACCTTATCATTATCTGGTTGACCA 58.643 40.000 2.40 2.40 45.30 4.02
3524 3972 5.765182 CCACCTTATCATTATCTGGTTGACC 59.235 44.000 0.00 0.00 0.00 4.02
3525 3973 6.357367 ACCACCTTATCATTATCTGGTTGAC 58.643 40.000 0.00 0.00 0.00 3.18
3526 3974 6.575244 ACCACCTTATCATTATCTGGTTGA 57.425 37.500 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.