Multiple sequence alignment - TraesCS5B01G346100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G346100 chr5B 100.000 3099 0 0 1 3099 528556096 528552998 0.000000e+00 5723.0
1 TraesCS5B01G346100 chr5B 87.150 856 103 2 728 1577 528564297 528563443 0.000000e+00 965.0
2 TraesCS5B01G346100 chr5B 83.887 993 125 19 728 1704 528570805 528569832 0.000000e+00 915.0
3 TraesCS5B01G346100 chr5B 86.070 804 101 4 820 1615 528567245 528566445 0.000000e+00 854.0
4 TraesCS5B01G346100 chr5B 86.475 488 51 13 2621 3097 528573493 528573010 3.540000e-144 521.0
5 TraesCS5B01G346100 chr5B 84.898 490 64 8 2612 3095 528561754 528561269 1.290000e-133 486.0
6 TraesCS5B01G346100 chr5B 83.471 363 45 9 813 1169 528544942 528544589 1.070000e-84 324.0
7 TraesCS5B01G346100 chr5A 93.742 1566 80 5 728 2292 549186974 549185426 0.000000e+00 2333.0
8 TraesCS5B01G346100 chr5A 93.169 732 41 3 1 731 549187742 549187019 0.000000e+00 1066.0
9 TraesCS5B01G346100 chr5A 85.011 894 108 13 820 1709 549193267 549192396 0.000000e+00 885.0
10 TraesCS5B01G346100 chr5A 82.157 992 138 20 728 1704 549196790 549195823 0.000000e+00 815.0
11 TraesCS5B01G346100 chr5A 94.280 507 28 1 2593 3099 549166350 549165845 0.000000e+00 774.0
12 TraesCS5B01G346100 chr5A 86.242 487 54 12 2621 3097 549199573 549199090 1.650000e-142 516.0
13 TraesCS5B01G346100 chr5A 84.556 518 68 8 2593 3099 549191418 549190902 1.280000e-138 503.0
14 TraesCS5B01G346100 chr5A 80.832 673 86 26 813 1442 547640776 547641448 3.590000e-134 488.0
15 TraesCS5B01G346100 chr5A 94.534 311 14 1 2286 2593 549166880 549166570 7.780000e-131 477.0
16 TraesCS5B01G346100 chr5A 82.485 491 75 6 2617 3097 549195001 549194512 1.330000e-113 420.0
17 TraesCS5B01G346100 chr5A 84.328 268 39 1 1195 1459 549157206 549156939 3.070000e-65 259.0
18 TraesCS5B01G346100 chr5D 84.899 894 110 12 820 1709 435256176 435255304 0.000000e+00 880.0
19 TraesCS5B01G346100 chr5D 83.134 1002 128 21 728 1704 435259534 435258549 0.000000e+00 876.0
20 TraesCS5B01G346100 chr5D 87.623 509 54 5 2599 3099 435254267 435253760 1.600000e-162 582.0
21 TraesCS5B01G346100 chr5D 86.242 487 53 13 2621 3097 435262298 435261816 1.650000e-142 516.0
22 TraesCS5B01G346100 chr5D 80.608 691 85 26 813 1459 435251760 435251075 3.590000e-134 488.0
23 TraesCS5B01G346100 chr5D 82.961 493 73 8 2617 3099 435257687 435257196 4.750000e-118 435.0
24 TraesCS5B01G346100 chr5D 83.898 354 49 4 813 1161 433019019 433019369 6.410000e-87 331.0
25 TraesCS5B01G346100 chr5D 100.000 34 0 0 3066 3099 434328817 434328784 2.580000e-06 63.9
26 TraesCS5B01G346100 chr5D 100.000 34 0 0 3066 3099 434394915 434394948 2.580000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G346100 chr5B 528552998 528556096 3098 True 5723.0 5723 100.0000 1 3099 1 chr5B.!!$R2 3098
1 TraesCS5B01G346100 chr5B 528561269 528573493 12224 True 748.2 965 85.6960 728 3097 5 chr5B.!!$R3 2369
2 TraesCS5B01G346100 chr5A 549185426 549199573 14147 True 934.0 2333 86.7660 1 3099 7 chr5A.!!$R3 3098
3 TraesCS5B01G346100 chr5A 549165845 549166880 1035 True 625.5 774 94.4070 2286 3099 2 chr5A.!!$R2 813
4 TraesCS5B01G346100 chr5A 547640776 547641448 672 False 488.0 488 80.8320 813 1442 1 chr5A.!!$F1 629
5 TraesCS5B01G346100 chr5D 435251075 435262298 11223 True 629.5 880 84.2445 728 3099 6 chr5D.!!$R2 2371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.032515 TGGCCGGAGAGAATACCTGA 60.033 55.0 5.05 0.0 0.00 3.86 F
261 262 0.040204 CCCAGCTTTGGTCTTGGGAT 59.960 55.0 2.18 0.0 38.82 3.85 F
575 576 0.105224 TTTGTCGCCTCGAGTTTGGA 59.895 50.0 12.31 0.0 36.23 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 14072 0.169009 GACATTCACGCCCTTTGAGC 59.831 55.000 0.0 0.0 0.00 4.26 R
1986 14415 0.915364 AGACTCCCAGAATGAAGCCC 59.085 55.000 0.0 0.0 39.69 5.19 R
2431 14892 1.611977 GGAAGGGCTGGTGTGTAAAAC 59.388 52.381 0.0 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.109229 CCAGTCCCACCTGATATCCT 57.891 55.000 0.00 0.00 34.23 3.24
20 21 2.412591 CCAGTCCCACCTGATATCCTT 58.587 52.381 0.00 0.00 34.23 3.36
21 22 2.105477 CCAGTCCCACCTGATATCCTTG 59.895 54.545 0.00 0.00 34.23 3.61
22 23 2.774234 CAGTCCCACCTGATATCCTTGT 59.226 50.000 0.00 0.00 34.23 3.16
24 25 4.594920 CAGTCCCACCTGATATCCTTGTAT 59.405 45.833 0.00 0.00 34.23 2.29
25 26 4.594920 AGTCCCACCTGATATCCTTGTATG 59.405 45.833 0.00 0.00 0.00 2.39
26 27 3.909995 TCCCACCTGATATCCTTGTATGG 59.090 47.826 0.00 0.09 0.00 2.74
27 28 3.009473 CCCACCTGATATCCTTGTATGGG 59.991 52.174 0.00 5.39 38.46 4.00
28 29 3.560025 CCACCTGATATCCTTGTATGGGC 60.560 52.174 0.00 0.00 0.00 5.36
29 30 3.072915 CACCTGATATCCTTGTATGGGCA 59.927 47.826 0.00 0.00 0.00 5.36
30 31 3.073062 ACCTGATATCCTTGTATGGGCAC 59.927 47.826 0.00 0.00 0.00 5.01
32 33 2.969262 TGATATCCTTGTATGGGCACGA 59.031 45.455 0.00 0.00 0.00 4.35
33 34 3.006859 TGATATCCTTGTATGGGCACGAG 59.993 47.826 0.00 0.00 0.00 4.18
34 35 1.496060 ATCCTTGTATGGGCACGAGA 58.504 50.000 0.00 0.00 32.42 4.04
37 38 2.158957 TCCTTGTATGGGCACGAGAATC 60.159 50.000 0.00 0.00 32.42 2.52
38 39 2.419990 CCTTGTATGGGCACGAGAATCA 60.420 50.000 0.00 0.00 32.42 2.57
39 40 2.602257 TGTATGGGCACGAGAATCAG 57.398 50.000 0.00 0.00 33.17 2.90
40 41 2.107366 TGTATGGGCACGAGAATCAGA 58.893 47.619 0.00 0.00 33.17 3.27
41 42 2.700371 TGTATGGGCACGAGAATCAGAT 59.300 45.455 0.00 0.00 33.17 2.90
43 44 1.194218 TGGGCACGAGAATCAGATGA 58.806 50.000 0.00 0.00 33.17 2.92
44 45 1.134699 TGGGCACGAGAATCAGATGAC 60.135 52.381 0.00 0.00 33.17 3.06
46 47 1.202302 GGCACGAGAATCAGATGACGA 60.202 52.381 9.93 0.00 33.17 4.20
49 50 3.911365 GCACGAGAATCAGATGACGATAG 59.089 47.826 9.93 3.21 37.26 2.08
50 51 4.555708 GCACGAGAATCAGATGACGATAGT 60.556 45.833 9.93 0.00 46.25 2.12
51 52 5.515184 CACGAGAATCAGATGACGATAGTT 58.485 41.667 9.93 0.00 43.86 2.24
52 53 5.397828 CACGAGAATCAGATGACGATAGTTG 59.602 44.000 9.93 0.00 43.86 3.16
53 54 4.914504 CGAGAATCAGATGACGATAGTTGG 59.085 45.833 0.00 0.00 43.86 3.77
54 55 5.278022 CGAGAATCAGATGACGATAGTTGGA 60.278 44.000 0.00 0.00 43.86 3.53
55 56 6.507900 GAGAATCAGATGACGATAGTTGGAA 58.492 40.000 0.00 0.00 43.86 3.53
56 57 6.980978 GAGAATCAGATGACGATAGTTGGAAA 59.019 38.462 0.00 0.00 43.86 3.13
66 67 5.659048 CGATAGTTGGAAAATCAGTAGGC 57.341 43.478 0.00 0.00 0.00 3.93
67 68 5.116180 CGATAGTTGGAAAATCAGTAGGCA 58.884 41.667 0.00 0.00 0.00 4.75
68 69 5.584649 CGATAGTTGGAAAATCAGTAGGCAA 59.415 40.000 0.00 0.00 0.00 4.52
69 70 6.093495 CGATAGTTGGAAAATCAGTAGGCAAA 59.907 38.462 0.00 0.00 0.00 3.68
70 71 5.712152 AGTTGGAAAATCAGTAGGCAAAG 57.288 39.130 0.00 0.00 0.00 2.77
71 72 5.140454 AGTTGGAAAATCAGTAGGCAAAGT 58.860 37.500 0.00 0.00 0.00 2.66
72 73 6.303839 AGTTGGAAAATCAGTAGGCAAAGTA 58.696 36.000 0.00 0.00 0.00 2.24
73 74 6.948309 AGTTGGAAAATCAGTAGGCAAAGTAT 59.052 34.615 0.00 0.00 0.00 2.12
74 75 7.451566 AGTTGGAAAATCAGTAGGCAAAGTATT 59.548 33.333 0.00 0.00 0.00 1.89
75 76 7.156876 TGGAAAATCAGTAGGCAAAGTATTG 57.843 36.000 0.00 0.00 39.65 1.90
85 86 0.976963 CAAAGTATTGCTGCAACGCG 59.023 50.000 18.51 3.53 0.00 6.01
86 87 0.591170 AAAGTATTGCTGCAACGCGT 59.409 45.000 18.51 5.58 0.00 6.01
89 90 1.065031 GTATTGCTGCAACGCGTTGG 61.065 55.000 42.59 31.23 40.74 3.77
90 91 2.193865 TATTGCTGCAACGCGTTGGG 62.194 55.000 42.59 25.92 40.74 4.12
108 109 2.178890 GCGAGATGCCCAAGCTGAG 61.179 63.158 0.00 0.00 40.80 3.35
109 110 2.178890 CGAGATGCCCAAGCTGAGC 61.179 63.158 0.00 0.00 40.80 4.26
110 111 1.823041 GAGATGCCCAAGCTGAGCC 60.823 63.158 0.00 0.00 40.80 4.70
111 112 2.044650 GATGCCCAAGCTGAGCCA 60.045 61.111 0.00 0.00 40.80 4.75
112 113 1.455217 GATGCCCAAGCTGAGCCAT 60.455 57.895 0.00 0.00 40.80 4.40
113 114 0.179009 GATGCCCAAGCTGAGCCATA 60.179 55.000 0.00 0.00 40.80 2.74
115 116 1.225704 GCCCAAGCTGAGCCATACT 59.774 57.895 0.00 0.00 35.50 2.12
116 117 1.099879 GCCCAAGCTGAGCCATACTG 61.100 60.000 0.00 0.00 35.50 2.74
117 118 0.465097 CCCAAGCTGAGCCATACTGG 60.465 60.000 0.00 0.36 41.55 4.00
118 119 0.254178 CCAAGCTGAGCCATACTGGT 59.746 55.000 0.00 0.00 40.46 4.00
120 121 0.176680 AAGCTGAGCCATACTGGTCG 59.823 55.000 0.00 0.00 40.46 4.79
121 122 0.684479 AGCTGAGCCATACTGGTCGA 60.684 55.000 0.00 0.00 40.46 4.20
122 123 0.249238 GCTGAGCCATACTGGTCGAG 60.249 60.000 0.00 0.00 40.46 4.04
123 124 0.249238 CTGAGCCATACTGGTCGAGC 60.249 60.000 7.89 7.89 40.46 5.03
124 125 1.299468 GAGCCATACTGGTCGAGCG 60.299 63.158 10.46 7.47 40.46 5.03
125 126 2.279517 GCCATACTGGTCGAGCGG 60.280 66.667 21.50 21.50 40.46 5.52
126 127 2.417516 CCATACTGGTCGAGCGGG 59.582 66.667 26.03 15.71 31.35 6.13
127 128 2.417516 CATACTGGTCGAGCGGGG 59.582 66.667 26.03 13.34 0.00 5.73
128 129 3.537874 ATACTGGTCGAGCGGGGC 61.538 66.667 26.03 0.00 0.00 5.80
140 141 4.838152 CGGGGCGACAGTGGATGG 62.838 72.222 0.00 0.00 0.00 3.51
141 142 4.489771 GGGGCGACAGTGGATGGG 62.490 72.222 0.00 0.00 0.00 4.00
143 144 2.668632 GGCGACAGTGGATGGGAA 59.331 61.111 0.00 0.00 0.00 3.97
144 145 1.745489 GGCGACAGTGGATGGGAAC 60.745 63.158 0.00 0.00 0.00 3.62
145 146 2.100631 GCGACAGTGGATGGGAACG 61.101 63.158 0.00 0.00 0.00 3.95
146 147 1.589630 CGACAGTGGATGGGAACGA 59.410 57.895 0.00 0.00 0.00 3.85
147 148 0.175760 CGACAGTGGATGGGAACGAT 59.824 55.000 0.00 0.00 0.00 3.73
148 149 1.656652 GACAGTGGATGGGAACGATG 58.343 55.000 0.00 0.00 0.00 3.84
149 150 1.207089 GACAGTGGATGGGAACGATGA 59.793 52.381 0.00 0.00 0.00 2.92
150 151 1.066143 ACAGTGGATGGGAACGATGAC 60.066 52.381 0.00 0.00 0.00 3.06
152 153 0.810031 GTGGATGGGAACGATGACGG 60.810 60.000 0.00 0.00 44.46 4.79
154 155 0.177141 GGATGGGAACGATGACGGAA 59.823 55.000 0.00 0.00 44.46 4.30
155 156 1.202651 GGATGGGAACGATGACGGAAT 60.203 52.381 0.00 0.00 44.46 3.01
156 157 1.867233 GATGGGAACGATGACGGAATG 59.133 52.381 0.00 0.00 44.46 2.67
157 158 0.107897 TGGGAACGATGACGGAATGG 60.108 55.000 0.00 0.00 44.46 3.16
158 159 1.436983 GGGAACGATGACGGAATGGC 61.437 60.000 0.00 0.00 44.46 4.40
159 160 1.436983 GGAACGATGACGGAATGGCC 61.437 60.000 0.00 0.00 44.46 5.36
170 171 2.171341 GGAATGGCCGGAGAGAATAC 57.829 55.000 5.05 0.00 0.00 1.89
171 172 1.270893 GGAATGGCCGGAGAGAATACC 60.271 57.143 5.05 0.00 0.00 2.73
172 173 1.694696 GAATGGCCGGAGAGAATACCT 59.305 52.381 5.05 0.00 0.00 3.08
173 174 1.051812 ATGGCCGGAGAGAATACCTG 58.948 55.000 5.05 0.00 0.00 4.00
174 175 0.032515 TGGCCGGAGAGAATACCTGA 60.033 55.000 5.05 0.00 0.00 3.86
175 176 1.343069 GGCCGGAGAGAATACCTGAT 58.657 55.000 5.05 0.00 0.00 2.90
176 177 1.273886 GGCCGGAGAGAATACCTGATC 59.726 57.143 5.05 0.00 0.00 2.92
177 178 1.273886 GCCGGAGAGAATACCTGATCC 59.726 57.143 5.05 0.00 0.00 3.36
181 182 3.243569 CGGAGAGAATACCTGATCCACAC 60.244 52.174 0.00 0.00 31.01 3.82
182 183 3.070302 GGAGAGAATACCTGATCCACACC 59.930 52.174 0.00 0.00 31.01 4.16
183 184 3.706594 GAGAGAATACCTGATCCACACCA 59.293 47.826 0.00 0.00 0.00 4.17
184 185 3.452627 AGAGAATACCTGATCCACACCAC 59.547 47.826 0.00 0.00 0.00 4.16
185 186 3.181329 AGAATACCTGATCCACACCACA 58.819 45.455 0.00 0.00 0.00 4.17
186 187 3.587061 AGAATACCTGATCCACACCACAA 59.413 43.478 0.00 0.00 0.00 3.33
187 188 3.634397 ATACCTGATCCACACCACAAG 57.366 47.619 0.00 0.00 0.00 3.16
188 189 0.250901 ACCTGATCCACACCACAAGC 60.251 55.000 0.00 0.00 0.00 4.01
189 190 0.250858 CCTGATCCACACCACAAGCA 60.251 55.000 0.00 0.00 0.00 3.91
190 191 0.877071 CTGATCCACACCACAAGCAC 59.123 55.000 0.00 0.00 0.00 4.40
191 192 0.182299 TGATCCACACCACAAGCACA 59.818 50.000 0.00 0.00 0.00 4.57
192 193 1.317613 GATCCACACCACAAGCACAA 58.682 50.000 0.00 0.00 0.00 3.33
193 194 1.888512 GATCCACACCACAAGCACAAT 59.111 47.619 0.00 0.00 0.00 2.71
194 195 2.647683 TCCACACCACAAGCACAATA 57.352 45.000 0.00 0.00 0.00 1.90
196 197 4.293662 TCCACACCACAAGCACAATATA 57.706 40.909 0.00 0.00 0.00 0.86
197 198 4.854173 TCCACACCACAAGCACAATATAT 58.146 39.130 0.00 0.00 0.00 0.86
198 199 4.639755 TCCACACCACAAGCACAATATATG 59.360 41.667 0.00 0.00 0.00 1.78
199 200 4.639755 CCACACCACAAGCACAATATATGA 59.360 41.667 0.00 0.00 0.00 2.15
200 201 5.125257 CCACACCACAAGCACAATATATGAA 59.875 40.000 0.00 0.00 0.00 2.57
201 202 6.029607 CACACCACAAGCACAATATATGAAC 58.970 40.000 0.00 0.00 0.00 3.18
202 203 5.945784 ACACCACAAGCACAATATATGAACT 59.054 36.000 0.00 0.00 0.00 3.01
203 204 6.127925 ACACCACAAGCACAATATATGAACTG 60.128 38.462 0.00 0.00 0.00 3.16
204 205 6.093909 CACCACAAGCACAATATATGAACTGA 59.906 38.462 0.00 0.00 0.00 3.41
205 206 6.094048 ACCACAAGCACAATATATGAACTGAC 59.906 38.462 0.00 0.00 0.00 3.51
206 207 6.317140 CCACAAGCACAATATATGAACTGACT 59.683 38.462 0.00 0.00 0.00 3.41
207 208 7.148188 CCACAAGCACAATATATGAACTGACTT 60.148 37.037 0.00 0.00 0.00 3.01
209 210 8.883731 ACAAGCACAATATATGAACTGACTTAC 58.116 33.333 0.00 0.00 0.00 2.34
211 212 8.879342 AGCACAATATATGAACTGACTTACTC 57.121 34.615 0.00 0.00 0.00 2.59
212 213 7.928706 AGCACAATATATGAACTGACTTACTCC 59.071 37.037 0.00 0.00 0.00 3.85
213 214 7.710907 GCACAATATATGAACTGACTTACTCCA 59.289 37.037 0.00 0.00 0.00 3.86
214 215 9.035607 CACAATATATGAACTGACTTACTCCAC 57.964 37.037 0.00 0.00 0.00 4.02
215 216 8.758829 ACAATATATGAACTGACTTACTCCACA 58.241 33.333 0.00 0.00 0.00 4.17
216 217 9.599866 CAATATATGAACTGACTTACTCCACAA 57.400 33.333 0.00 0.00 0.00 3.33
223 224 8.204160 TGAACTGACTTACTCCACAATATATGG 58.796 37.037 0.23 0.23 38.71 2.74
224 225 7.676683 ACTGACTTACTCCACAATATATGGT 57.323 36.000 5.96 0.00 38.47 3.55
225 226 7.727181 ACTGACTTACTCCACAATATATGGTC 58.273 38.462 5.96 0.00 38.47 4.02
226 227 7.565398 ACTGACTTACTCCACAATATATGGTCT 59.435 37.037 5.96 0.00 38.47 3.85
228 229 8.857098 TGACTTACTCCACAATATATGGTCTAC 58.143 37.037 5.96 0.00 38.47 2.59
230 231 7.722728 ACTTACTCCACAATATATGGTCTACGA 59.277 37.037 5.96 0.00 38.47 3.43
231 232 8.645814 TTACTCCACAATATATGGTCTACGAT 57.354 34.615 5.96 0.00 38.47 3.73
233 234 8.824756 ACTCCACAATATATGGTCTACGATAT 57.175 34.615 5.96 3.58 38.47 1.63
234 235 9.256228 ACTCCACAATATATGGTCTACGATATT 57.744 33.333 3.41 0.00 38.47 1.28
243 244 5.779529 TGGTCTACGATATTACTGTTCCC 57.220 43.478 0.00 0.00 0.00 3.97
244 245 4.586001 TGGTCTACGATATTACTGTTCCCC 59.414 45.833 0.00 0.00 0.00 4.81
245 246 4.586001 GGTCTACGATATTACTGTTCCCCA 59.414 45.833 0.00 0.00 0.00 4.96
248 249 3.039011 ACGATATTACTGTTCCCCAGCT 58.961 45.455 0.00 0.00 45.68 4.24
249 250 3.454812 ACGATATTACTGTTCCCCAGCTT 59.545 43.478 0.00 0.00 45.68 3.74
250 251 4.080526 ACGATATTACTGTTCCCCAGCTTT 60.081 41.667 0.00 0.00 45.68 3.51
251 252 4.273480 CGATATTACTGTTCCCCAGCTTTG 59.727 45.833 0.00 0.00 45.68 2.77
252 253 2.286365 TTACTGTTCCCCAGCTTTGG 57.714 50.000 0.00 0.00 45.68 3.28
253 254 1.145571 TACTGTTCCCCAGCTTTGGT 58.854 50.000 0.00 0.00 45.68 3.67
254 255 0.178990 ACTGTTCCCCAGCTTTGGTC 60.179 55.000 0.00 0.00 45.68 4.02
255 256 0.111253 CTGTTCCCCAGCTTTGGTCT 59.889 55.000 0.00 0.00 33.59 3.85
256 257 0.555769 TGTTCCCCAGCTTTGGTCTT 59.444 50.000 0.00 0.00 0.00 3.01
257 258 0.961753 GTTCCCCAGCTTTGGTCTTG 59.038 55.000 0.00 0.00 0.00 3.02
258 259 0.178964 TTCCCCAGCTTTGGTCTTGG 60.179 55.000 0.00 0.00 0.00 3.61
259 260 1.607467 CCCCAGCTTTGGTCTTGGG 60.607 63.158 1.36 1.36 36.40 4.12
260 261 1.460255 CCCAGCTTTGGTCTTGGGA 59.540 57.895 2.18 0.00 38.82 4.37
261 262 0.040204 CCCAGCTTTGGTCTTGGGAT 59.960 55.000 2.18 0.00 38.82 3.85
262 263 1.180029 CCAGCTTTGGTCTTGGGATG 58.820 55.000 0.00 0.00 0.00 3.51
263 264 0.529378 CAGCTTTGGTCTTGGGATGC 59.471 55.000 0.00 0.00 0.00 3.91
264 265 0.112995 AGCTTTGGTCTTGGGATGCA 59.887 50.000 0.00 0.00 0.00 3.96
266 267 2.025037 AGCTTTGGTCTTGGGATGCATA 60.025 45.455 0.00 0.00 0.00 3.14
267 268 2.099756 GCTTTGGTCTTGGGATGCATAC 59.900 50.000 0.00 0.00 0.00 2.39
268 269 3.624777 CTTTGGTCTTGGGATGCATACT 58.375 45.455 9.27 0.00 0.00 2.12
269 270 3.737559 TTGGTCTTGGGATGCATACTT 57.262 42.857 9.27 0.00 0.00 2.24
270 271 3.737559 TGGTCTTGGGATGCATACTTT 57.262 42.857 9.27 0.00 0.00 2.66
271 272 4.046286 TGGTCTTGGGATGCATACTTTT 57.954 40.909 9.27 0.00 0.00 2.27
272 273 4.016444 TGGTCTTGGGATGCATACTTTTC 58.984 43.478 9.27 0.00 0.00 2.29
273 274 4.263905 TGGTCTTGGGATGCATACTTTTCT 60.264 41.667 9.27 0.00 0.00 2.52
274 275 4.706962 GGTCTTGGGATGCATACTTTTCTT 59.293 41.667 9.27 0.00 0.00 2.52
275 276 5.885912 GGTCTTGGGATGCATACTTTTCTTA 59.114 40.000 9.27 0.00 0.00 2.10
291 292 4.970662 TTCTTATGCAGAAAGTCATGGC 57.029 40.909 10.45 0.00 38.68 4.40
292 293 4.226427 TCTTATGCAGAAAGTCATGGCT 57.774 40.909 0.00 0.00 0.00 4.75
293 294 3.943381 TCTTATGCAGAAAGTCATGGCTG 59.057 43.478 0.00 0.00 0.00 4.85
294 295 1.471119 ATGCAGAAAGTCATGGCTGG 58.529 50.000 0.00 0.00 0.00 4.85
296 297 1.093159 GCAGAAAGTCATGGCTGGAG 58.907 55.000 0.00 0.00 0.00 3.86
297 298 1.612726 GCAGAAAGTCATGGCTGGAGT 60.613 52.381 0.00 0.00 0.00 3.85
298 299 2.355108 GCAGAAAGTCATGGCTGGAGTA 60.355 50.000 0.00 0.00 0.00 2.59
301 302 1.958288 AAGTCATGGCTGGAGTAGGT 58.042 50.000 0.00 0.00 0.00 3.08
302 303 1.958288 AGTCATGGCTGGAGTAGGTT 58.042 50.000 0.00 0.00 0.00 3.50
303 304 2.269940 AGTCATGGCTGGAGTAGGTTT 58.730 47.619 0.00 0.00 0.00 3.27
304 305 3.450904 AGTCATGGCTGGAGTAGGTTTA 58.549 45.455 0.00 0.00 0.00 2.01
305 306 3.452627 AGTCATGGCTGGAGTAGGTTTAG 59.547 47.826 0.00 0.00 0.00 1.85
307 308 3.451178 TCATGGCTGGAGTAGGTTTAGAC 59.549 47.826 0.00 0.00 0.00 2.59
308 309 3.185880 TGGCTGGAGTAGGTTTAGACT 57.814 47.619 0.00 0.00 0.00 3.24
309 310 3.517612 TGGCTGGAGTAGGTTTAGACTT 58.482 45.455 0.00 0.00 0.00 3.01
310 311 3.908103 TGGCTGGAGTAGGTTTAGACTTT 59.092 43.478 0.00 0.00 0.00 2.66
311 312 4.349930 TGGCTGGAGTAGGTTTAGACTTTT 59.650 41.667 0.00 0.00 0.00 2.27
313 314 5.280062 GGCTGGAGTAGGTTTAGACTTTTCT 60.280 44.000 0.00 0.00 35.66 2.52
315 316 7.384477 GCTGGAGTAGGTTTAGACTTTTCTTA 58.616 38.462 0.00 0.00 32.75 2.10
317 318 8.253867 TGGAGTAGGTTTAGACTTTTCTTACA 57.746 34.615 0.00 0.00 32.75 2.41
318 319 8.146412 TGGAGTAGGTTTAGACTTTTCTTACAC 58.854 37.037 0.00 0.00 32.75 2.90
327 328 9.511272 TTTAGACTTTTCTTACACTATTTCCCC 57.489 33.333 0.00 0.00 32.75 4.81
328 329 7.086685 AGACTTTTCTTACACTATTTCCCCA 57.913 36.000 0.00 0.00 0.00 4.96
330 331 7.665974 AGACTTTTCTTACACTATTTCCCCAAG 59.334 37.037 0.00 0.00 0.00 3.61
331 332 7.295340 ACTTTTCTTACACTATTTCCCCAAGT 58.705 34.615 0.00 0.00 0.00 3.16
333 334 8.541899 TTTTCTTACACTATTTCCCCAAGTTT 57.458 30.769 0.00 0.00 0.00 2.66
334 335 8.541899 TTTCTTACACTATTTCCCCAAGTTTT 57.458 30.769 0.00 0.00 0.00 2.43
335 336 7.519032 TCTTACACTATTTCCCCAAGTTTTG 57.481 36.000 0.00 0.00 0.00 2.44
347 348 4.205323 CCAAGTTTTGGTCTTCGTGTAC 57.795 45.455 0.00 0.00 45.93 2.90
349 350 4.495184 CCAAGTTTTGGTCTTCGTGTACAC 60.495 45.833 16.32 16.32 45.93 2.90
350 351 3.864243 AGTTTTGGTCTTCGTGTACACA 58.136 40.909 24.98 10.07 0.00 3.72
351 352 4.255301 AGTTTTGGTCTTCGTGTACACAA 58.745 39.130 24.98 16.28 0.00 3.33
352 353 4.093850 AGTTTTGGTCTTCGTGTACACAAC 59.906 41.667 24.98 16.86 0.00 3.32
353 354 1.842720 TGGTCTTCGTGTACACAACG 58.157 50.000 24.98 12.08 0.00 4.10
354 355 0.505655 GGTCTTCGTGTACACAACGC 59.494 55.000 24.98 10.64 35.13 4.84
361 362 4.084888 GTACACAACGCGGCAGCC 62.085 66.667 12.47 0.00 41.18 4.85
378 379 3.673484 CCTTGCCAGGCAACACCG 61.673 66.667 23.88 13.23 43.99 4.94
379 380 2.594303 CTTGCCAGGCAACACCGA 60.594 61.111 23.88 1.32 43.99 4.69
380 381 2.594303 TTGCCAGGCAACACCGAG 60.594 61.111 23.88 0.00 43.99 4.63
381 382 3.414136 TTGCCAGGCAACACCGAGT 62.414 57.895 23.88 0.00 43.99 4.18
382 383 2.046009 TTGCCAGGCAACACCGAGTA 62.046 55.000 23.88 0.00 43.99 2.59
384 385 1.736645 CCAGGCAACACCGAGTACG 60.737 63.158 0.00 0.00 46.52 3.67
385 386 1.287815 CAGGCAACACCGAGTACGA 59.712 57.895 0.00 0.00 46.52 3.43
387 388 2.084681 GGCAACACCGAGTACGACG 61.085 63.158 8.17 8.17 42.66 5.12
388 389 1.370900 GCAACACCGAGTACGACGT 60.371 57.895 5.52 5.52 42.66 4.34
389 390 1.602877 GCAACACCGAGTACGACGTG 61.603 60.000 11.56 10.10 42.66 4.49
390 391 1.370900 AACACCGAGTACGACGTGC 60.371 57.895 11.56 9.77 42.66 5.34
391 392 2.503375 CACCGAGTACGACGTGCC 60.503 66.667 11.56 0.69 42.66 5.01
392 393 2.979676 ACCGAGTACGACGTGCCA 60.980 61.111 11.56 0.00 42.66 4.92
395 396 1.796355 CGAGTACGACGTGCCACAG 60.796 63.158 11.56 0.00 42.66 3.66
396 397 1.443872 GAGTACGACGTGCCACAGG 60.444 63.158 11.56 0.00 0.00 4.00
397 398 1.859427 GAGTACGACGTGCCACAGGA 61.859 60.000 11.56 0.00 0.00 3.86
398 399 1.731969 GTACGACGTGCCACAGGAC 60.732 63.158 11.56 0.00 0.00 3.85
402 403 3.168528 ACGTGCCACAGGACCCTT 61.169 61.111 0.00 0.00 0.00 3.95
403 404 2.358737 CGTGCCACAGGACCCTTC 60.359 66.667 0.00 0.00 0.00 3.46
404 405 2.358737 GTGCCACAGGACCCTTCG 60.359 66.667 0.00 0.00 0.00 3.79
405 406 3.636231 TGCCACAGGACCCTTCGG 61.636 66.667 0.00 0.00 0.00 4.30
409 410 0.605589 CCACAGGACCCTTCGGTTTC 60.606 60.000 0.00 0.00 44.88 2.78
410 411 0.396811 CACAGGACCCTTCGGTTTCT 59.603 55.000 0.00 0.00 44.88 2.52
411 412 1.137697 ACAGGACCCTTCGGTTTCTT 58.862 50.000 0.00 0.00 44.88 2.52
412 413 1.493446 ACAGGACCCTTCGGTTTCTTT 59.507 47.619 0.00 0.00 44.88 2.52
413 414 2.152016 CAGGACCCTTCGGTTTCTTTC 58.848 52.381 0.00 0.00 44.88 2.62
414 415 2.055579 AGGACCCTTCGGTTTCTTTCT 58.944 47.619 0.00 0.00 44.88 2.52
415 416 2.038689 AGGACCCTTCGGTTTCTTTCTC 59.961 50.000 0.00 0.00 44.88 2.87
416 417 2.424557 GACCCTTCGGTTTCTTTCTCC 58.575 52.381 0.00 0.00 44.88 3.71
417 418 1.772453 ACCCTTCGGTTTCTTTCTCCA 59.228 47.619 0.00 0.00 40.58 3.86
419 420 2.152016 CCTTCGGTTTCTTTCTCCACC 58.848 52.381 0.00 0.00 0.00 4.61
420 421 2.486548 CCTTCGGTTTCTTTCTCCACCA 60.487 50.000 0.00 0.00 0.00 4.17
421 422 2.249844 TCGGTTTCTTTCTCCACCAC 57.750 50.000 0.00 0.00 0.00 4.16
423 424 1.235724 GGTTTCTTTCTCCACCACCG 58.764 55.000 0.00 0.00 0.00 4.94
424 425 1.476291 GGTTTCTTTCTCCACCACCGT 60.476 52.381 0.00 0.00 0.00 4.83
425 426 2.294979 GTTTCTTTCTCCACCACCGTT 58.705 47.619 0.00 0.00 0.00 4.44
426 427 1.961793 TTCTTTCTCCACCACCGTTG 58.038 50.000 0.00 0.00 0.00 4.10
427 428 1.124780 TCTTTCTCCACCACCGTTGA 58.875 50.000 0.00 0.00 0.00 3.18
428 429 1.202604 TCTTTCTCCACCACCGTTGAC 60.203 52.381 0.00 0.00 0.00 3.18
429 430 0.531090 TTTCTCCACCACCGTTGACG 60.531 55.000 0.00 0.00 39.44 4.35
430 431 1.393487 TTCTCCACCACCGTTGACGA 61.393 55.000 4.91 0.00 43.02 4.20
432 433 2.663852 CCACCACCGTTGACGACC 60.664 66.667 4.91 0.00 43.02 4.79
435 436 2.357034 CCACCGTTGACGACCAGG 60.357 66.667 4.91 0.00 43.02 4.45
436 437 2.420043 CACCGTTGACGACCAGGT 59.580 61.111 4.91 0.00 43.02 4.00
437 438 1.954146 CACCGTTGACGACCAGGTG 60.954 63.158 0.00 5.73 45.01 4.00
438 439 2.129146 ACCGTTGACGACCAGGTGA 61.129 57.895 0.00 0.00 43.02 4.02
439 440 1.372997 CCGTTGACGACCAGGTGAG 60.373 63.158 0.00 0.00 43.02 3.51
440 441 2.022129 CGTTGACGACCAGGTGAGC 61.022 63.158 0.00 0.00 43.02 4.26
441 442 1.668151 GTTGACGACCAGGTGAGCC 60.668 63.158 0.00 0.00 0.00 4.70
443 444 1.816863 TTGACGACCAGGTGAGCCTC 61.817 60.000 0.00 0.00 44.97 4.70
444 445 1.979693 GACGACCAGGTGAGCCTCT 60.980 63.158 0.00 0.00 44.97 3.69
446 447 1.216710 CGACCAGGTGAGCCTCTTC 59.783 63.158 0.00 0.00 44.97 2.87
447 448 1.599576 GACCAGGTGAGCCTCTTCC 59.400 63.158 0.00 0.00 44.97 3.46
448 449 0.907230 GACCAGGTGAGCCTCTTCCT 60.907 60.000 0.00 3.79 44.97 3.36
449 450 0.907230 ACCAGGTGAGCCTCTTCCTC 60.907 60.000 0.00 0.00 44.97 3.71
451 452 1.306568 AGGTGAGCCTCTTCCTCCC 60.307 63.158 3.79 0.00 42.67 4.30
452 453 2.726351 GGTGAGCCTCTTCCTCCCG 61.726 68.421 0.00 0.00 0.00 5.14
453 454 3.077556 TGAGCCTCTTCCTCCCGC 61.078 66.667 0.00 0.00 0.00 6.13
454 455 3.077556 GAGCCTCTTCCTCCCGCA 61.078 66.667 0.00 0.00 0.00 5.69
455 456 3.080121 AGCCTCTTCCTCCCGCAG 61.080 66.667 0.00 0.00 0.00 5.18
456 457 3.077556 GCCTCTTCCTCCCGCAGA 61.078 66.667 0.00 0.00 0.00 4.26
457 458 2.896443 CCTCTTCCTCCCGCAGAC 59.104 66.667 0.00 0.00 0.00 3.51
458 459 2.726351 CCTCTTCCTCCCGCAGACC 61.726 68.421 0.00 0.00 0.00 3.85
459 460 1.984570 CTCTTCCTCCCGCAGACCA 60.985 63.158 0.00 0.00 0.00 4.02
460 461 2.232298 CTCTTCCTCCCGCAGACCAC 62.232 65.000 0.00 0.00 0.00 4.16
462 463 4.631740 TCCTCCCGCAGACCACCA 62.632 66.667 0.00 0.00 0.00 4.17
463 464 3.402681 CCTCCCGCAGACCACCAT 61.403 66.667 0.00 0.00 0.00 3.55
464 465 2.187946 CTCCCGCAGACCACCATC 59.812 66.667 0.00 0.00 0.00 3.51
465 466 3.391665 CTCCCGCAGACCACCATCC 62.392 68.421 0.00 0.00 0.00 3.51
467 468 2.187946 CCGCAGACCACCATCCTC 59.812 66.667 0.00 0.00 0.00 3.71
469 470 1.153489 CGCAGACCACCATCCTCTG 60.153 63.158 0.00 0.00 35.48 3.35
471 472 1.222936 CAGACCACCATCCTCTGCC 59.777 63.158 0.00 0.00 0.00 4.85
472 473 1.229625 AGACCACCATCCTCTGCCA 60.230 57.895 0.00 0.00 0.00 4.92
473 474 1.078143 GACCACCATCCTCTGCCAC 60.078 63.158 0.00 0.00 0.00 5.01
474 475 1.539869 ACCACCATCCTCTGCCACT 60.540 57.895 0.00 0.00 0.00 4.00
476 477 0.393537 CCACCATCCTCTGCCACTTC 60.394 60.000 0.00 0.00 0.00 3.01
477 478 0.617413 CACCATCCTCTGCCACTTCT 59.383 55.000 0.00 0.00 0.00 2.85
480 481 1.649664 CATCCTCTGCCACTTCTTCG 58.350 55.000 0.00 0.00 0.00 3.79
481 482 0.107945 ATCCTCTGCCACTTCTTCGC 60.108 55.000 0.00 0.00 0.00 4.70
482 483 1.188219 TCCTCTGCCACTTCTTCGCT 61.188 55.000 0.00 0.00 0.00 4.93
483 484 0.532573 CCTCTGCCACTTCTTCGCTA 59.467 55.000 0.00 0.00 0.00 4.26
484 485 1.470632 CCTCTGCCACTTCTTCGCTAG 60.471 57.143 0.00 0.00 0.00 3.42
485 486 0.108615 TCTGCCACTTCTTCGCTAGC 60.109 55.000 4.06 4.06 0.00 3.42
487 488 0.390340 TGCCACTTCTTCGCTAGCTG 60.390 55.000 13.93 6.69 0.00 4.24
488 489 0.108615 GCCACTTCTTCGCTAGCTGA 60.109 55.000 13.93 9.11 0.00 4.26
501 502 2.344950 CTAGCTGAGCAAGTCTTGTGG 58.655 52.381 14.03 3.78 0.00 4.17
502 503 0.888285 AGCTGAGCAAGTCTTGTGGC 60.888 55.000 14.03 12.09 0.00 5.01
503 504 1.168407 GCTGAGCAAGTCTTGTGGCA 61.168 55.000 14.03 8.71 0.00 4.92
504 505 0.590195 CTGAGCAAGTCTTGTGGCAC 59.410 55.000 11.55 11.55 0.00 5.01
507 508 0.181114 AGCAAGTCTTGTGGCACTCA 59.819 50.000 19.83 4.52 0.00 3.41
508 509 0.308993 GCAAGTCTTGTGGCACTCAC 59.691 55.000 19.83 12.04 46.23 3.51
509 510 0.947244 CAAGTCTTGTGGCACTCACC 59.053 55.000 19.83 4.60 45.48 4.02
510 511 0.546122 AAGTCTTGTGGCACTCACCA 59.454 50.000 19.83 0.00 45.48 4.17
511 512 0.767375 AGTCTTGTGGCACTCACCAT 59.233 50.000 19.83 0.00 45.48 3.55
513 514 0.250858 TCTTGTGGCACTCACCATGG 60.251 55.000 19.83 11.19 45.48 3.66
515 516 0.767998 TTGTGGCACTCACCATGGTA 59.232 50.000 19.28 5.48 45.48 3.25
519 520 1.423541 TGGCACTCACCATGGTAGTTT 59.576 47.619 19.28 0.00 33.75 2.66
520 521 2.084546 GGCACTCACCATGGTAGTTTC 58.915 52.381 19.28 13.70 0.00 2.78
522 523 3.412386 GCACTCACCATGGTAGTTTCTT 58.588 45.455 19.28 0.00 0.00 2.52
523 524 3.189287 GCACTCACCATGGTAGTTTCTTG 59.811 47.826 19.28 9.00 0.00 3.02
524 525 4.389374 CACTCACCATGGTAGTTTCTTGT 58.611 43.478 19.28 4.90 0.00 3.16
527 528 4.787551 TCACCATGGTAGTTTCTTGTGTT 58.212 39.130 19.28 0.00 0.00 3.32
528 529 5.197451 TCACCATGGTAGTTTCTTGTGTTT 58.803 37.500 19.28 0.00 0.00 2.83
529 530 5.298276 TCACCATGGTAGTTTCTTGTGTTTC 59.702 40.000 19.28 0.00 0.00 2.78
530 531 5.299279 CACCATGGTAGTTTCTTGTGTTTCT 59.701 40.000 19.28 0.00 0.00 2.52
531 532 5.299279 ACCATGGTAGTTTCTTGTGTTTCTG 59.701 40.000 18.10 0.00 0.00 3.02
532 533 4.893424 TGGTAGTTTCTTGTGTTTCTGC 57.107 40.909 0.00 0.00 0.00 4.26
533 534 4.523083 TGGTAGTTTCTTGTGTTTCTGCT 58.477 39.130 0.00 0.00 0.00 4.24
535 536 5.417580 TGGTAGTTTCTTGTGTTTCTGCTTT 59.582 36.000 0.00 0.00 0.00 3.51
536 537 5.971792 GGTAGTTTCTTGTGTTTCTGCTTTC 59.028 40.000 0.00 0.00 0.00 2.62
539 540 5.415701 AGTTTCTTGTGTTTCTGCTTTCTGA 59.584 36.000 0.00 0.00 0.00 3.27
540 541 5.895636 TTCTTGTGTTTCTGCTTTCTGAA 57.104 34.783 0.00 0.00 0.00 3.02
541 542 5.895636 TCTTGTGTTTCTGCTTTCTGAAA 57.104 34.783 2.44 2.44 37.66 2.69
542 543 6.266168 TCTTGTGTTTCTGCTTTCTGAAAA 57.734 33.333 4.18 0.00 40.31 2.29
548 549 6.252228 GTGTTTCTGCTTTCTGAAAACTGAAG 59.748 38.462 18.61 7.43 40.31 3.02
550 551 5.998454 TCTGCTTTCTGAAAACTGAAGAG 57.002 39.130 9.69 0.00 0.00 2.85
553 554 6.769822 TCTGCTTTCTGAAAACTGAAGAGATT 59.230 34.615 9.69 0.00 0.00 2.40
554 555 6.963796 TGCTTTCTGAAAACTGAAGAGATTC 58.036 36.000 4.18 0.00 0.00 2.52
555 556 6.769822 TGCTTTCTGAAAACTGAAGAGATTCT 59.230 34.615 4.18 0.00 0.00 2.40
556 557 7.284034 TGCTTTCTGAAAACTGAAGAGATTCTT 59.716 33.333 4.18 0.00 39.87 2.52
557 558 8.134261 GCTTTCTGAAAACTGAAGAGATTCTTT 58.866 33.333 4.18 0.00 36.73 2.52
559 560 9.793252 TTTCTGAAAACTGAAGAGATTCTTTTG 57.207 29.630 0.00 0.00 36.73 2.44
560 561 8.511604 TCTGAAAACTGAAGAGATTCTTTTGT 57.488 30.769 0.00 0.00 36.73 2.83
561 562 8.616076 TCTGAAAACTGAAGAGATTCTTTTGTC 58.384 33.333 0.00 0.00 36.73 3.18
563 564 4.999751 ACTGAAGAGATTCTTTTGTCGC 57.000 40.909 0.00 0.00 36.73 5.19
564 565 3.748568 ACTGAAGAGATTCTTTTGTCGCC 59.251 43.478 0.00 0.00 36.73 5.54
565 566 3.999663 CTGAAGAGATTCTTTTGTCGCCT 59.000 43.478 0.00 0.00 36.73 5.52
568 569 2.231478 AGAGATTCTTTTGTCGCCTCGA 59.769 45.455 0.00 0.00 0.00 4.04
570 571 2.028930 AGATTCTTTTGTCGCCTCGAGT 60.029 45.455 12.31 0.00 36.23 4.18
571 572 2.234300 TTCTTTTGTCGCCTCGAGTT 57.766 45.000 12.31 0.00 36.23 3.01
573 574 1.864711 TCTTTTGTCGCCTCGAGTTTG 59.135 47.619 12.31 0.32 36.23 2.93
574 575 0.941542 TTTTGTCGCCTCGAGTTTGG 59.058 50.000 12.31 0.00 36.23 3.28
575 576 0.105224 TTTGTCGCCTCGAGTTTGGA 59.895 50.000 12.31 0.00 36.23 3.53
576 577 0.105224 TTGTCGCCTCGAGTTTGGAA 59.895 50.000 12.31 0.00 36.23 3.53
577 578 0.320374 TGTCGCCTCGAGTTTGGAAT 59.680 50.000 12.31 0.00 36.23 3.01
580 581 1.021390 CGCCTCGAGTTTGGAATGCT 61.021 55.000 12.31 0.00 0.00 3.79
581 582 1.168714 GCCTCGAGTTTGGAATGCTT 58.831 50.000 12.31 0.00 0.00 3.91
582 583 1.541588 GCCTCGAGTTTGGAATGCTTT 59.458 47.619 12.31 0.00 0.00 3.51
583 584 2.414691 GCCTCGAGTTTGGAATGCTTTC 60.415 50.000 12.31 3.77 0.00 2.62
584 585 3.077359 CCTCGAGTTTGGAATGCTTTCT 58.923 45.455 12.31 0.00 32.16 2.52
585 586 3.503748 CCTCGAGTTTGGAATGCTTTCTT 59.496 43.478 12.31 0.00 32.16 2.52
586 587 4.378874 CCTCGAGTTTGGAATGCTTTCTTC 60.379 45.833 12.31 0.00 32.16 2.87
587 588 4.389374 TCGAGTTTGGAATGCTTTCTTCT 58.611 39.130 11.68 5.81 32.16 2.85
589 590 4.023707 CGAGTTTGGAATGCTTTCTTCTGT 60.024 41.667 11.68 0.00 32.16 3.41
592 593 2.517959 TGGAATGCTTTCTTCTGTGGG 58.482 47.619 11.68 0.00 32.16 4.61
593 594 2.158475 TGGAATGCTTTCTTCTGTGGGT 60.158 45.455 11.68 0.00 32.16 4.51
594 595 2.229784 GGAATGCTTTCTTCTGTGGGTG 59.770 50.000 11.68 0.00 32.16 4.61
595 596 1.251251 ATGCTTTCTTCTGTGGGTGC 58.749 50.000 0.00 0.00 0.00 5.01
596 597 0.823356 TGCTTTCTTCTGTGGGTGCC 60.823 55.000 0.00 0.00 0.00 5.01
597 598 0.823356 GCTTTCTTCTGTGGGTGCCA 60.823 55.000 0.00 0.00 0.00 4.92
605 606 2.746277 GTGGGTGCCACGATGGTC 60.746 66.667 0.00 0.00 44.95 4.02
606 607 2.927856 TGGGTGCCACGATGGTCT 60.928 61.111 0.00 0.00 40.46 3.85
608 609 1.303317 GGGTGCCACGATGGTCTTT 60.303 57.895 0.00 0.00 40.46 2.52
610 611 1.586154 GGTGCCACGATGGTCTTTGG 61.586 60.000 0.00 0.00 40.46 3.28
611 612 0.605319 GTGCCACGATGGTCTTTGGA 60.605 55.000 0.00 0.00 40.46 3.53
613 614 1.026718 GCCACGATGGTCTTTGGAGG 61.027 60.000 0.00 0.00 40.46 4.30
614 615 1.026718 CCACGATGGTCTTTGGAGGC 61.027 60.000 0.00 0.00 31.35 4.70
615 616 0.321564 CACGATGGTCTTTGGAGGCA 60.322 55.000 0.00 0.00 0.00 4.75
616 617 0.321653 ACGATGGTCTTTGGAGGCAC 60.322 55.000 0.00 0.00 0.00 5.01
618 619 1.611673 CGATGGTCTTTGGAGGCACTT 60.612 52.381 0.00 0.00 41.55 3.16
621 622 1.271379 TGGTCTTTGGAGGCACTTAGC 60.271 52.381 0.00 0.00 41.55 3.09
637 638 7.313951 GCACTTAGCCATGGATTTATATCTC 57.686 40.000 18.40 0.00 37.23 2.75
638 639 6.881065 GCACTTAGCCATGGATTTATATCTCA 59.119 38.462 18.40 0.00 37.23 3.27
639 640 7.065563 GCACTTAGCCATGGATTTATATCTCAG 59.934 40.741 18.40 3.73 37.23 3.35
640 641 7.065563 CACTTAGCCATGGATTTATATCTCAGC 59.934 40.741 18.40 0.00 0.00 4.26
641 642 4.511527 AGCCATGGATTTATATCTCAGCG 58.488 43.478 18.40 0.00 0.00 5.18
642 643 3.064545 GCCATGGATTTATATCTCAGCGC 59.935 47.826 18.40 0.00 0.00 5.92
643 644 4.256110 CCATGGATTTATATCTCAGCGCA 58.744 43.478 11.47 0.00 0.00 6.09
644 645 4.331992 CCATGGATTTATATCTCAGCGCAG 59.668 45.833 11.47 0.00 0.00 5.18
662 663 4.651867 CCATGGGCAGGAGACAAG 57.348 61.111 2.85 0.00 0.00 3.16
663 664 1.077212 CCATGGGCAGGAGACAAGG 60.077 63.158 2.85 0.00 0.00 3.61
664 665 1.751927 CATGGGCAGGAGACAAGGC 60.752 63.158 0.00 0.00 0.00 4.35
667 668 2.679716 GGCAGGAGACAAGGCCAT 59.320 61.111 5.01 0.00 41.99 4.40
669 670 1.300963 GCAGGAGACAAGGCCATGA 59.699 57.895 16.33 0.00 0.00 3.07
670 671 0.747283 GCAGGAGACAAGGCCATGAG 60.747 60.000 16.33 0.00 0.00 2.90
671 672 0.747283 CAGGAGACAAGGCCATGAGC 60.747 60.000 16.33 6.24 42.60 4.26
673 674 0.747283 GGAGACAAGGCCATGAGCAG 60.747 60.000 16.33 0.00 46.50 4.24
674 675 1.375098 GAGACAAGGCCATGAGCAGC 61.375 60.000 16.33 0.00 46.50 5.25
680 681 3.690745 GCCATGAGCAGCCAAAGT 58.309 55.556 0.00 0.00 42.97 2.66
681 682 1.969862 GCCATGAGCAGCCAAAGTT 59.030 52.632 0.00 0.00 42.97 2.66
682 683 0.389426 GCCATGAGCAGCCAAAGTTG 60.389 55.000 0.00 0.00 42.97 3.16
683 684 0.963962 CCATGAGCAGCCAAAGTTGT 59.036 50.000 0.00 0.00 0.00 3.32
684 685 1.336517 CCATGAGCAGCCAAAGTTGTG 60.337 52.381 0.00 0.00 0.00 3.33
686 687 1.006922 GAGCAGCCAAAGTTGTGCC 60.007 57.895 3.71 0.00 36.54 5.01
688 689 2.336088 CAGCCAAAGTTGTGCCGG 59.664 61.111 0.00 0.00 0.00 6.13
690 691 3.989787 GCCAAAGTTGTGCCGGGG 61.990 66.667 2.18 0.00 0.00 5.73
691 692 3.989787 CCAAAGTTGTGCCGGGGC 61.990 66.667 2.18 1.86 42.35 5.80
706 707 3.223589 GGCAACCGGGCAAGTGTT 61.224 61.111 6.32 0.00 42.77 3.32
708 709 2.637025 CAACCGGGCAAGTGTTCG 59.363 61.111 6.32 0.00 0.00 3.95
709 710 2.593436 AACCGGGCAAGTGTTCGG 60.593 61.111 6.32 11.13 46.95 4.30
712 713 3.283684 CGGGCAAGTGTTCGGCAA 61.284 61.111 0.00 0.00 0.00 4.52
713 714 2.644992 GGGCAAGTGTTCGGCAAG 59.355 61.111 0.00 0.00 0.00 4.01
714 715 2.193536 GGGCAAGTGTTCGGCAAGT 61.194 57.895 0.00 0.00 0.00 3.16
716 717 1.658409 GCAAGTGTTCGGCAAGTGC 60.658 57.895 0.00 0.00 41.14 4.40
717 718 1.726865 CAAGTGTTCGGCAAGTGCA 59.273 52.632 5.52 0.00 44.36 4.57
718 719 0.311790 CAAGTGTTCGGCAAGTGCAT 59.688 50.000 5.52 0.00 44.36 3.96
720 721 1.730547 GTGTTCGGCAAGTGCATGC 60.731 57.895 11.82 11.82 45.67 4.06
726 727 2.100991 GCAAGTGCATGCGCTACC 59.899 61.111 32.52 21.85 41.59 3.18
729 730 0.248336 CAAGTGCATGCGCTACCATG 60.248 55.000 32.52 22.74 44.18 3.66
735 2963 4.794648 TGCGCTACCATGCCCACC 62.795 66.667 9.73 0.00 0.00 4.61
768 2996 1.027357 ACTTGCAAGTTGCCTGAGTG 58.973 50.000 26.36 10.50 44.23 3.51
769 2997 0.313043 CTTGCAAGTTGCCTGAGTGG 59.687 55.000 24.59 3.82 44.23 4.00
817 3060 3.147553 TCTGGTCCCATAGAGATCTCG 57.852 52.381 16.97 3.18 34.09 4.04
847 13170 1.808343 GTGATCACATTGTCTGCAGCA 59.192 47.619 21.07 7.85 0.00 4.41
918 13241 2.033550 ACCGCTCTTTCTGATAGCTACG 59.966 50.000 0.00 0.00 34.03 3.51
935 13258 0.179043 ACGCACAACCCACACATGTA 60.179 50.000 0.00 0.00 0.00 2.29
936 13259 0.947960 CGCACAACCCACACATGTAA 59.052 50.000 0.00 0.00 0.00 2.41
947 13270 2.226437 CACACATGTAAACTGCCCTGAC 59.774 50.000 0.00 0.00 0.00 3.51
956 13279 2.039624 TGCCCTGACCCCTCTCTC 59.960 66.667 0.00 0.00 0.00 3.20
1151 13474 1.062488 AAGTGGCAGAGGAAGGTGGT 61.062 55.000 0.00 0.00 0.00 4.16
1184 13531 4.803426 CCAGCAGACCGGCGAGTC 62.803 72.222 9.30 14.45 39.27 3.36
1268 13627 3.164269 CCCGCTGGCATACCTCCT 61.164 66.667 0.00 0.00 36.63 3.69
1325 13687 1.006571 AAGAGTTCGGCTTCGCGAA 60.007 52.632 22.01 22.01 0.00 4.70
1359 13721 2.515523 ATCATGCTGCCCTGCGAC 60.516 61.111 0.00 0.00 35.36 5.19
1442 13804 1.160137 GCGTTCTTGAGCTCCATTGT 58.840 50.000 12.15 0.00 0.00 2.71
1443 13805 1.135859 GCGTTCTTGAGCTCCATTGTG 60.136 52.381 12.15 0.00 0.00 3.33
1509 13871 3.857052 AGTTGCGCTTTGTACATAGCTA 58.143 40.909 28.17 17.92 33.98 3.32
1647 14009 2.990740 AATACCTGGCCACTCCAAAA 57.009 45.000 0.00 0.00 46.01 2.44
1667 14029 2.539302 ACCCAAGCACATTATTTGCCT 58.461 42.857 0.00 0.00 41.18 4.75
1676 14038 5.028375 GCACATTATTTGCCTTAGTTCGTC 58.972 41.667 0.00 0.00 33.58 4.20
1697 14060 6.433404 TCGTCCAAGTACTGAAGAAAGTAGAT 59.567 38.462 0.00 0.00 33.35 1.98
1709 14072 6.650807 TGAAGAAAGTAGATACAAACTGCTGG 59.349 38.462 0.00 0.00 31.36 4.85
1738 14101 1.338200 GCGTGAATGTCTGAAGGAGGT 60.338 52.381 0.00 0.00 0.00 3.85
1751 14114 7.944554 TGTCTGAAGGAGGTGAAATTCTTTTAT 59.055 33.333 0.00 0.00 0.00 1.40
1752 14115 9.449719 GTCTGAAGGAGGTGAAATTCTTTTATA 57.550 33.333 0.00 0.00 0.00 0.98
1767 14130 7.609760 TTCTTTTATATGCGTTGATGTCAGT 57.390 32.000 0.00 0.00 0.00 3.41
1771 14134 2.168326 ATGCGTTGATGTCAGTGACA 57.832 45.000 27.35 27.35 46.90 3.58
1775 14138 0.792640 GTTGATGTCAGTGACAGGCG 59.207 55.000 28.54 0.00 46.04 5.52
1866 14249 4.250464 TGAGTGGTCTATAGGTTTTTGCG 58.750 43.478 0.00 0.00 0.00 4.85
1873 14256 0.823460 ATAGGTTTTTGCGGGGCATG 59.177 50.000 0.00 0.00 38.76 4.06
1874 14257 1.254284 TAGGTTTTTGCGGGGCATGG 61.254 55.000 0.00 0.00 38.76 3.66
1875 14258 2.741985 GTTTTTGCGGGGCATGGC 60.742 61.111 11.56 11.56 38.76 4.40
1917 14310 0.990374 AATGAACTCCTCTGCTGCCT 59.010 50.000 0.00 0.00 0.00 4.75
1974 14403 2.031163 GTTCTCCTGTGCCAGCGT 59.969 61.111 0.00 0.00 0.00 5.07
1986 14415 1.734477 CCAGCGTCGTTGAGTCCTG 60.734 63.158 10.97 0.00 0.00 3.86
2003 14432 0.622665 CTGGGCTTCATTCTGGGAGT 59.377 55.000 0.00 0.00 0.00 3.85
2075 14505 0.250513 GTCGGCTTCTCCACAATCCT 59.749 55.000 0.00 0.00 34.01 3.24
2091 14521 9.489084 TCCACAATCCTATGAGAATTTAATACG 57.511 33.333 0.00 0.00 0.00 3.06
2112 14542 4.254492 CGGAATTAATAAGCCCTCTAGCC 58.746 47.826 0.00 0.00 0.00 3.93
2160 14590 7.022384 GCAGATTTTCTCAAGTTCTTCATGAG 58.978 38.462 0.00 0.00 41.51 2.90
2217 14647 9.562408 CACTTCCTACTGTTCTATATCAGTCTA 57.438 37.037 1.08 0.00 42.77 2.59
2230 14660 8.778059 TCTATATCAGTCTAATTTTGGTTGGGT 58.222 33.333 0.00 0.00 0.00 4.51
2389 14850 0.897863 TGCCAATTTGCCGCTACCTT 60.898 50.000 0.00 0.00 0.00 3.50
2395 14856 4.097892 CCAATTTGCCGCTACCTTAGAAAT 59.902 41.667 0.00 0.00 0.00 2.17
2398 14859 2.901249 TGCCGCTACCTTAGAAATCAC 58.099 47.619 0.00 0.00 0.00 3.06
2401 14862 2.169769 CCGCTACCTTAGAAATCACCCA 59.830 50.000 0.00 0.00 0.00 4.51
2431 14892 8.572828 TCTTGTATGCAACTTTACAACATTTG 57.427 30.769 6.54 0.00 34.33 2.32
2504 14965 4.926238 AGTCGTTCATGAAACTTCTGCTAG 59.074 41.667 10.35 0.00 35.59 3.42
2513 14976 9.973450 TCATGAAACTTCTGCTAGTATATCTTC 57.027 33.333 0.00 0.00 0.00 2.87
2570 15041 9.656040 CTGCAATATCTATTAATGAGAGAAGCT 57.344 33.333 0.00 0.00 0.00 3.74
2601 15309 7.701924 TGATAAATCATGAAACAATTCTTCGGC 59.298 33.333 0.00 0.00 36.48 5.54
2619 15825 3.430895 TCGGCGTTGAACTATTTTCAGAC 59.569 43.478 6.85 0.00 0.00 3.51
2703 15914 2.745884 GCGCTACATGTGGCACCA 60.746 61.111 30.25 3.56 36.84 4.17
2766 15977 4.278419 GGAATGCTCTCTCTACTTCCTCTC 59.722 50.000 0.00 0.00 31.53 3.20
2793 16004 3.413846 TTCTTCTGAGCAAGCAGATGT 57.586 42.857 13.13 0.00 43.84 3.06
2805 16019 1.410517 AGCAGATGTCATACTCCACCG 59.589 52.381 0.00 0.00 0.00 4.94
2894 16111 1.142778 GCTCGCCGAAGACTGTCATC 61.143 60.000 10.88 6.77 0.00 2.92
2969 16186 3.019564 GCAGTGGCCTTTATCTGTGATT 58.980 45.455 3.32 0.00 0.00 2.57
3002 16219 2.543641 CAGCATGCTTCGTCATCACTA 58.456 47.619 19.98 0.00 0.00 2.74
3051 16268 3.840890 CTCACTAACTGAGCGAGTCTT 57.159 47.619 0.00 0.00 40.23 3.01
3064 16281 2.540101 GCGAGTCTTTTGGGATGTATCG 59.460 50.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.105477 CAAGGATATCAGGTGGGACTGG 59.895 54.545 4.83 0.00 38.98 4.00
3 4 4.263068 CCATACAAGGATATCAGGTGGGAC 60.263 50.000 4.83 0.00 0.00 4.46
4 5 3.909995 CCATACAAGGATATCAGGTGGGA 59.090 47.826 4.83 0.00 0.00 4.37
5 6 3.009473 CCCATACAAGGATATCAGGTGGG 59.991 52.174 4.83 11.25 37.96 4.61
6 7 3.560025 GCCCATACAAGGATATCAGGTGG 60.560 52.174 4.83 6.84 0.00 4.61
7 8 3.072915 TGCCCATACAAGGATATCAGGTG 59.927 47.826 4.83 1.76 0.00 4.00
8 9 3.073062 GTGCCCATACAAGGATATCAGGT 59.927 47.826 4.83 1.97 0.00 4.00
9 10 3.679389 GTGCCCATACAAGGATATCAGG 58.321 50.000 4.83 0.00 0.00 3.86
10 11 3.006859 TCGTGCCCATACAAGGATATCAG 59.993 47.826 4.83 0.00 0.00 2.90
11 12 2.969262 TCGTGCCCATACAAGGATATCA 59.031 45.455 4.83 0.00 0.00 2.15
12 13 3.258372 TCTCGTGCCCATACAAGGATATC 59.742 47.826 0.00 0.00 0.00 1.63
13 14 3.239449 TCTCGTGCCCATACAAGGATAT 58.761 45.455 0.00 0.00 0.00 1.63
14 15 2.673258 TCTCGTGCCCATACAAGGATA 58.327 47.619 0.00 0.00 0.00 2.59
17 18 2.213499 GATTCTCGTGCCCATACAAGG 58.787 52.381 0.00 0.00 0.00 3.61
18 19 2.868583 CTGATTCTCGTGCCCATACAAG 59.131 50.000 0.00 0.00 0.00 3.16
19 20 2.499693 TCTGATTCTCGTGCCCATACAA 59.500 45.455 0.00 0.00 0.00 2.41
20 21 2.107366 TCTGATTCTCGTGCCCATACA 58.893 47.619 0.00 0.00 0.00 2.29
21 22 2.890808 TCTGATTCTCGTGCCCATAC 57.109 50.000 0.00 0.00 0.00 2.39
22 23 2.965147 TCATCTGATTCTCGTGCCCATA 59.035 45.455 0.00 0.00 0.00 2.74
24 25 1.134699 GTCATCTGATTCTCGTGCCCA 60.135 52.381 0.00 0.00 0.00 5.36
25 26 1.576356 GTCATCTGATTCTCGTGCCC 58.424 55.000 0.00 0.00 0.00 5.36
26 27 1.202302 TCGTCATCTGATTCTCGTGCC 60.202 52.381 0.00 0.00 0.00 5.01
27 28 2.194800 TCGTCATCTGATTCTCGTGC 57.805 50.000 0.00 0.00 0.00 5.34
28 29 5.102020 ACTATCGTCATCTGATTCTCGTG 57.898 43.478 0.00 0.00 0.00 4.35
29 30 5.506483 CCAACTATCGTCATCTGATTCTCGT 60.506 44.000 0.00 0.00 0.00 4.18
30 31 4.914504 CCAACTATCGTCATCTGATTCTCG 59.085 45.833 0.00 0.00 0.00 4.04
32 33 6.471233 TTCCAACTATCGTCATCTGATTCT 57.529 37.500 0.00 0.00 0.00 2.40
33 34 7.539712 TTTTCCAACTATCGTCATCTGATTC 57.460 36.000 0.00 0.00 0.00 2.52
34 35 7.770433 TGATTTTCCAACTATCGTCATCTGATT 59.230 33.333 0.00 0.00 0.00 2.57
37 38 6.536582 ACTGATTTTCCAACTATCGTCATCTG 59.463 38.462 0.00 0.00 0.00 2.90
38 39 6.644347 ACTGATTTTCCAACTATCGTCATCT 58.356 36.000 0.00 0.00 0.00 2.90
39 40 6.910536 ACTGATTTTCCAACTATCGTCATC 57.089 37.500 0.00 0.00 0.00 2.92
40 41 6.986817 CCTACTGATTTTCCAACTATCGTCAT 59.013 38.462 0.00 0.00 0.00 3.06
41 42 6.338146 CCTACTGATTTTCCAACTATCGTCA 58.662 40.000 0.00 0.00 0.00 4.35
43 44 5.116882 GCCTACTGATTTTCCAACTATCGT 58.883 41.667 0.00 0.00 0.00 3.73
44 45 5.116180 TGCCTACTGATTTTCCAACTATCG 58.884 41.667 0.00 0.00 0.00 2.92
46 47 6.948309 ACTTTGCCTACTGATTTTCCAACTAT 59.052 34.615 0.00 0.00 0.00 2.12
49 50 5.453567 ACTTTGCCTACTGATTTTCCAAC 57.546 39.130 0.00 0.00 0.00 3.77
50 51 7.601856 CAATACTTTGCCTACTGATTTTCCAA 58.398 34.615 0.00 0.00 0.00 3.53
51 52 7.156876 CAATACTTTGCCTACTGATTTTCCA 57.843 36.000 0.00 0.00 0.00 3.53
66 67 0.976963 CGCGTTGCAGCAATACTTTG 59.023 50.000 11.96 0.00 36.85 2.77
67 68 0.591170 ACGCGTTGCAGCAATACTTT 59.409 45.000 11.96 0.00 36.85 2.66
68 69 0.591170 AACGCGTTGCAGCAATACTT 59.409 45.000 26.00 0.00 36.85 2.24
69 70 0.110238 CAACGCGTTGCAGCAATACT 60.110 50.000 35.89 1.91 36.85 2.12
70 71 1.065031 CCAACGCGTTGCAGCAATAC 61.065 55.000 39.42 5.70 39.16 1.89
71 72 1.208870 CCAACGCGTTGCAGCAATA 59.791 52.632 39.42 0.00 39.16 1.90
72 73 2.050168 CCAACGCGTTGCAGCAAT 60.050 55.556 39.42 8.34 39.16 3.56
73 74 4.263209 CCCAACGCGTTGCAGCAA 62.263 61.111 39.42 2.83 39.16 3.91
90 91 2.124983 TCAGCTTGGGCATCTCGC 60.125 61.111 0.00 0.00 41.70 5.03
92 93 3.824810 GCTCAGCTTGGGCATCTC 58.175 61.111 3.49 0.00 45.01 2.75
98 99 3.091318 CAGTATGGCTCAGCTTGGG 57.909 57.895 0.00 0.00 0.00 4.12
110 111 2.417516 CCCCGCTCGACCAGTATG 59.582 66.667 0.00 0.00 0.00 2.39
111 112 3.537874 GCCCCGCTCGACCAGTAT 61.538 66.667 0.00 0.00 0.00 2.12
123 124 4.838152 CCATCCACTGTCGCCCCG 62.838 72.222 0.00 0.00 0.00 5.73
124 125 4.489771 CCCATCCACTGTCGCCCC 62.490 72.222 0.00 0.00 0.00 5.80
125 126 2.966732 TTCCCATCCACTGTCGCCC 61.967 63.158 0.00 0.00 0.00 6.13
126 127 1.745489 GTTCCCATCCACTGTCGCC 60.745 63.158 0.00 0.00 0.00 5.54
127 128 2.100631 CGTTCCCATCCACTGTCGC 61.101 63.158 0.00 0.00 0.00 5.19
128 129 0.175760 ATCGTTCCCATCCACTGTCG 59.824 55.000 0.00 0.00 0.00 4.35
131 132 1.656652 GTCATCGTTCCCATCCACTG 58.343 55.000 0.00 0.00 0.00 3.66
132 133 0.175760 CGTCATCGTTCCCATCCACT 59.824 55.000 0.00 0.00 0.00 4.00
134 135 0.973496 TCCGTCATCGTTCCCATCCA 60.973 55.000 0.00 0.00 35.01 3.41
135 136 0.177141 TTCCGTCATCGTTCCCATCC 59.823 55.000 0.00 0.00 35.01 3.51
136 137 1.867233 CATTCCGTCATCGTTCCCATC 59.133 52.381 0.00 0.00 35.01 3.51
137 138 1.475034 CCATTCCGTCATCGTTCCCAT 60.475 52.381 0.00 0.00 35.01 4.00
138 139 0.107897 CCATTCCGTCATCGTTCCCA 60.108 55.000 0.00 0.00 35.01 4.37
139 140 1.436983 GCCATTCCGTCATCGTTCCC 61.437 60.000 0.00 0.00 35.01 3.97
140 141 1.436983 GGCCATTCCGTCATCGTTCC 61.437 60.000 0.00 0.00 35.01 3.62
141 142 2.014594 GGCCATTCCGTCATCGTTC 58.985 57.895 0.00 0.00 35.01 3.95
152 153 1.694696 AGGTATTCTCTCCGGCCATTC 59.305 52.381 2.24 0.00 0.00 2.67
154 155 1.051812 CAGGTATTCTCTCCGGCCAT 58.948 55.000 2.24 0.00 0.00 4.40
155 156 0.032515 TCAGGTATTCTCTCCGGCCA 60.033 55.000 2.24 0.00 0.00 5.36
156 157 1.273886 GATCAGGTATTCTCTCCGGCC 59.726 57.143 0.00 0.00 0.00 6.13
157 158 1.273886 GGATCAGGTATTCTCTCCGGC 59.726 57.143 0.00 0.00 0.00 6.13
158 159 2.297597 GTGGATCAGGTATTCTCTCCGG 59.702 54.545 0.00 0.00 30.56 5.14
159 160 2.959030 TGTGGATCAGGTATTCTCTCCG 59.041 50.000 0.00 0.00 30.56 4.63
160 161 3.070302 GGTGTGGATCAGGTATTCTCTCC 59.930 52.174 0.00 0.00 0.00 3.71
161 162 3.706594 TGGTGTGGATCAGGTATTCTCTC 59.293 47.826 0.00 0.00 0.00 3.20
162 163 3.452627 GTGGTGTGGATCAGGTATTCTCT 59.547 47.826 0.00 0.00 0.00 3.10
163 164 3.197766 TGTGGTGTGGATCAGGTATTCTC 59.802 47.826 0.00 0.00 0.00 2.87
164 165 3.181329 TGTGGTGTGGATCAGGTATTCT 58.819 45.455 0.00 0.00 0.00 2.40
167 168 2.356125 GCTTGTGGTGTGGATCAGGTAT 60.356 50.000 0.00 0.00 0.00 2.73
168 169 1.003118 GCTTGTGGTGTGGATCAGGTA 59.997 52.381 0.00 0.00 0.00 3.08
170 171 0.250858 TGCTTGTGGTGTGGATCAGG 60.251 55.000 0.00 0.00 0.00 3.86
171 172 0.877071 GTGCTTGTGGTGTGGATCAG 59.123 55.000 0.00 0.00 0.00 2.90
172 173 0.182299 TGTGCTTGTGGTGTGGATCA 59.818 50.000 0.00 0.00 0.00 2.92
173 174 1.317613 TTGTGCTTGTGGTGTGGATC 58.682 50.000 0.00 0.00 0.00 3.36
174 175 1.999648 ATTGTGCTTGTGGTGTGGAT 58.000 45.000 0.00 0.00 0.00 3.41
175 176 2.647683 TATTGTGCTTGTGGTGTGGA 57.352 45.000 0.00 0.00 0.00 4.02
176 177 4.639755 TCATATATTGTGCTTGTGGTGTGG 59.360 41.667 0.00 0.00 0.00 4.17
177 178 5.816449 TCATATATTGTGCTTGTGGTGTG 57.184 39.130 0.00 0.00 0.00 3.82
181 182 6.317140 AGTCAGTTCATATATTGTGCTTGTGG 59.683 38.462 0.00 0.00 0.00 4.17
182 183 7.312657 AGTCAGTTCATATATTGTGCTTGTG 57.687 36.000 0.00 0.00 0.00 3.33
183 184 7.928307 AAGTCAGTTCATATATTGTGCTTGT 57.072 32.000 0.00 0.00 0.00 3.16
184 185 9.102757 AGTAAGTCAGTTCATATATTGTGCTTG 57.897 33.333 0.00 0.00 0.00 4.01
185 186 9.319143 GAGTAAGTCAGTTCATATATTGTGCTT 57.681 33.333 0.00 0.00 0.00 3.91
186 187 7.928706 GGAGTAAGTCAGTTCATATATTGTGCT 59.071 37.037 0.00 0.00 0.00 4.40
187 188 7.710907 TGGAGTAAGTCAGTTCATATATTGTGC 59.289 37.037 0.00 0.00 0.00 4.57
188 189 9.035607 GTGGAGTAAGTCAGTTCATATATTGTG 57.964 37.037 0.00 0.00 0.00 3.33
189 190 8.758829 TGTGGAGTAAGTCAGTTCATATATTGT 58.241 33.333 0.00 0.00 0.00 2.71
190 191 9.599866 TTGTGGAGTAAGTCAGTTCATATATTG 57.400 33.333 0.00 0.00 0.00 1.90
196 197 9.770097 CATATATTGTGGAGTAAGTCAGTTCAT 57.230 33.333 0.00 0.00 0.00 2.57
197 198 8.204160 CCATATATTGTGGAGTAAGTCAGTTCA 58.796 37.037 1.55 0.00 39.12 3.18
198 199 8.204836 ACCATATATTGTGGAGTAAGTCAGTTC 58.795 37.037 12.36 0.00 39.12 3.01
199 200 8.090788 ACCATATATTGTGGAGTAAGTCAGTT 57.909 34.615 12.36 0.00 39.12 3.16
200 201 7.565398 AGACCATATATTGTGGAGTAAGTCAGT 59.435 37.037 12.36 0.00 39.12 3.41
201 202 7.957002 AGACCATATATTGTGGAGTAAGTCAG 58.043 38.462 12.36 0.00 39.12 3.51
202 203 7.914427 AGACCATATATTGTGGAGTAAGTCA 57.086 36.000 12.36 0.00 39.12 3.41
203 204 8.021973 CGTAGACCATATATTGTGGAGTAAGTC 58.978 40.741 12.36 0.00 39.12 3.01
204 205 7.722728 TCGTAGACCATATATTGTGGAGTAAGT 59.277 37.037 12.36 0.00 39.12 2.24
205 206 8.107399 TCGTAGACCATATATTGTGGAGTAAG 57.893 38.462 12.36 6.75 39.12 2.34
206 207 8.645814 ATCGTAGACCATATATTGTGGAGTAA 57.354 34.615 12.36 0.00 42.51 2.24
207 208 9.916360 ATATCGTAGACCATATATTGTGGAGTA 57.084 33.333 12.36 2.80 42.51 2.59
217 218 9.182214 GGGAACAGTAATATCGTAGACCATATA 57.818 37.037 0.00 0.00 42.51 0.86
218 219 7.123847 GGGGAACAGTAATATCGTAGACCATAT 59.876 40.741 0.00 0.00 42.51 1.78
219 220 6.435277 GGGGAACAGTAATATCGTAGACCATA 59.565 42.308 0.00 0.00 42.51 2.74
220 221 5.245526 GGGGAACAGTAATATCGTAGACCAT 59.754 44.000 0.00 0.00 42.51 3.55
223 224 5.770417 CTGGGGAACAGTAATATCGTAGAC 58.230 45.833 0.00 0.00 40.57 2.59
244 245 0.529378 GCATCCCAAGACCAAAGCTG 59.471 55.000 0.00 0.00 0.00 4.24
245 246 0.112995 TGCATCCCAAGACCAAAGCT 59.887 50.000 0.00 0.00 0.00 3.74
246 247 1.188863 ATGCATCCCAAGACCAAAGC 58.811 50.000 0.00 0.00 0.00 3.51
248 249 3.737559 AGTATGCATCCCAAGACCAAA 57.262 42.857 0.19 0.00 0.00 3.28
249 250 3.737559 AAGTATGCATCCCAAGACCAA 57.262 42.857 0.19 0.00 0.00 3.67
250 251 3.737559 AAAGTATGCATCCCAAGACCA 57.262 42.857 0.19 0.00 0.00 4.02
251 252 4.273318 AGAAAAGTATGCATCCCAAGACC 58.727 43.478 0.19 0.00 0.00 3.85
252 253 5.904362 AAGAAAAGTATGCATCCCAAGAC 57.096 39.130 0.19 0.00 0.00 3.01
253 254 7.572523 CATAAGAAAAGTATGCATCCCAAGA 57.427 36.000 0.19 0.00 0.00 3.02
270 271 4.397103 CAGCCATGACTTTCTGCATAAGAA 59.603 41.667 13.80 0.00 43.37 2.52
271 272 3.943381 CAGCCATGACTTTCTGCATAAGA 59.057 43.478 13.80 0.00 0.00 2.10
272 273 3.066342 CCAGCCATGACTTTCTGCATAAG 59.934 47.826 0.00 7.06 0.00 1.73
273 274 3.018856 CCAGCCATGACTTTCTGCATAA 58.981 45.455 0.00 0.00 0.00 1.90
274 275 2.239402 TCCAGCCATGACTTTCTGCATA 59.761 45.455 0.00 0.00 0.00 3.14
275 276 1.005097 TCCAGCCATGACTTTCTGCAT 59.995 47.619 0.00 0.00 0.00 3.96
278 279 2.486472 ACTCCAGCCATGACTTTCTG 57.514 50.000 0.00 0.00 0.00 3.02
279 280 2.503356 CCTACTCCAGCCATGACTTTCT 59.497 50.000 0.00 0.00 0.00 2.52
281 282 2.269940 ACCTACTCCAGCCATGACTTT 58.730 47.619 0.00 0.00 0.00 2.66
282 283 1.958288 ACCTACTCCAGCCATGACTT 58.042 50.000 0.00 0.00 0.00 3.01
283 284 1.958288 AACCTACTCCAGCCATGACT 58.042 50.000 0.00 0.00 0.00 3.41
284 285 2.789409 AAACCTACTCCAGCCATGAC 57.211 50.000 0.00 0.00 0.00 3.06
285 286 3.451178 GTCTAAACCTACTCCAGCCATGA 59.549 47.826 0.00 0.00 0.00 3.07
286 287 3.452627 AGTCTAAACCTACTCCAGCCATG 59.547 47.826 0.00 0.00 0.00 3.66
287 288 3.725634 AGTCTAAACCTACTCCAGCCAT 58.274 45.455 0.00 0.00 0.00 4.40
288 289 3.185880 AGTCTAAACCTACTCCAGCCA 57.814 47.619 0.00 0.00 0.00 4.75
289 290 4.554960 AAAGTCTAAACCTACTCCAGCC 57.445 45.455 0.00 0.00 0.00 4.85
290 291 5.795972 AGAAAAGTCTAAACCTACTCCAGC 58.204 41.667 0.00 0.00 29.93 4.85
291 292 8.365647 TGTAAGAAAAGTCTAAACCTACTCCAG 58.634 37.037 0.00 0.00 32.16 3.86
292 293 8.146412 GTGTAAGAAAAGTCTAAACCTACTCCA 58.854 37.037 0.00 0.00 32.16 3.86
293 294 8.366401 AGTGTAAGAAAAGTCTAAACCTACTCC 58.634 37.037 0.00 0.00 32.16 3.85
301 302 9.511272 GGGGAAATAGTGTAAGAAAAGTCTAAA 57.489 33.333 0.00 0.00 32.16 1.85
302 303 8.662255 TGGGGAAATAGTGTAAGAAAAGTCTAA 58.338 33.333 0.00 0.00 32.16 2.10
303 304 8.209802 TGGGGAAATAGTGTAAGAAAAGTCTA 57.790 34.615 0.00 0.00 32.16 2.59
304 305 7.086685 TGGGGAAATAGTGTAAGAAAAGTCT 57.913 36.000 0.00 0.00 34.72 3.24
305 306 7.447545 ACTTGGGGAAATAGTGTAAGAAAAGTC 59.552 37.037 0.00 0.00 0.00 3.01
307 308 7.761038 ACTTGGGGAAATAGTGTAAGAAAAG 57.239 36.000 0.00 0.00 0.00 2.27
308 309 8.541899 AAACTTGGGGAAATAGTGTAAGAAAA 57.458 30.769 0.00 0.00 0.00 2.29
309 310 8.417884 CAAAACTTGGGGAAATAGTGTAAGAAA 58.582 33.333 0.00 0.00 0.00 2.52
310 311 7.947282 CAAAACTTGGGGAAATAGTGTAAGAA 58.053 34.615 0.00 0.00 0.00 2.52
311 312 7.519032 CAAAACTTGGGGAAATAGTGTAAGA 57.481 36.000 0.00 0.00 0.00 2.10
327 328 4.093703 TGTGTACACGAAGACCAAAACTTG 59.906 41.667 20.61 0.00 0.00 3.16
328 329 4.255301 TGTGTACACGAAGACCAAAACTT 58.745 39.130 20.61 0.00 0.00 2.66
330 331 4.336932 GTTGTGTACACGAAGACCAAAAC 58.663 43.478 17.65 10.36 0.00 2.43
331 332 3.062369 CGTTGTGTACACGAAGACCAAAA 59.938 43.478 20.79 4.65 0.00 2.44
333 334 2.195096 CGTTGTGTACACGAAGACCAA 58.805 47.619 20.79 6.08 0.00 3.67
334 335 1.842720 CGTTGTGTACACGAAGACCA 58.157 50.000 20.79 0.00 0.00 4.02
335 336 0.505655 GCGTTGTGTACACGAAGACC 59.494 55.000 27.22 11.38 0.00 3.85
336 337 0.158096 CGCGTTGTGTACACGAAGAC 59.842 55.000 27.22 18.36 34.29 3.01
337 338 0.935831 CCGCGTTGTGTACACGAAGA 60.936 55.000 27.22 6.52 34.29 2.87
338 339 1.485514 CCGCGTTGTGTACACGAAG 59.514 57.895 21.00 21.00 34.29 3.79
339 340 2.587679 GCCGCGTTGTGTACACGAA 61.588 57.895 17.65 11.44 34.29 3.85
341 342 3.276409 CTGCCGCGTTGTGTACACG 62.276 63.158 20.61 10.53 32.24 4.49
342 343 2.549282 CTGCCGCGTTGTGTACAC 59.451 61.111 19.36 19.36 0.00 2.90
343 344 3.342627 GCTGCCGCGTTGTGTACA 61.343 61.111 4.92 0.00 0.00 2.90
344 345 4.084888 GGCTGCCGCGTTGTGTAC 62.085 66.667 1.35 0.00 36.88 2.90
364 365 2.512355 TACTCGGTGTTGCCTGGCA 61.512 57.895 19.30 19.30 36.47 4.92
365 366 2.033194 GTACTCGGTGTTGCCTGGC 61.033 63.158 12.87 12.87 34.25 4.85
367 368 1.007336 GTCGTACTCGGTGTTGCCTG 61.007 60.000 0.00 0.00 37.69 4.85
368 369 1.288127 GTCGTACTCGGTGTTGCCT 59.712 57.895 0.00 0.00 37.69 4.75
370 371 1.370900 ACGTCGTACTCGGTGTTGC 60.371 57.895 0.00 0.00 37.69 4.17
371 372 1.602877 GCACGTCGTACTCGGTGTTG 61.603 60.000 0.00 3.08 37.69 3.33
372 373 1.370900 GCACGTCGTACTCGGTGTT 60.371 57.895 0.00 0.00 37.69 3.32
373 374 2.253452 GCACGTCGTACTCGGTGT 59.747 61.111 0.00 0.00 37.69 4.16
374 375 2.503375 GGCACGTCGTACTCGGTG 60.503 66.667 0.00 7.28 37.69 4.94
375 376 2.979676 TGGCACGTCGTACTCGGT 60.980 61.111 0.00 0.00 37.69 4.69
376 377 2.503375 GTGGCACGTCGTACTCGG 60.503 66.667 0.00 0.00 37.69 4.63
378 379 1.443872 CCTGTGGCACGTCGTACTC 60.444 63.158 13.77 0.00 0.00 2.59
379 380 1.900016 TCCTGTGGCACGTCGTACT 60.900 57.895 13.77 0.00 0.00 2.73
380 381 1.731969 GTCCTGTGGCACGTCGTAC 60.732 63.158 13.77 3.07 0.00 3.67
381 382 2.646719 GTCCTGTGGCACGTCGTA 59.353 61.111 13.77 0.00 0.00 3.43
382 383 4.295119 GGTCCTGTGGCACGTCGT 62.295 66.667 13.77 0.00 0.00 4.34
384 385 3.178540 AAGGGTCCTGTGGCACGTC 62.179 63.158 13.77 3.08 0.00 4.34
385 386 3.168528 AAGGGTCCTGTGGCACGT 61.169 61.111 13.77 0.00 0.00 4.49
387 388 2.358737 CGAAGGGTCCTGTGGCAC 60.359 66.667 11.55 11.55 0.00 5.01
400 401 2.548480 GTGGTGGAGAAAGAAACCGAAG 59.452 50.000 0.00 0.00 35.33 3.79
402 403 1.202722 GGTGGTGGAGAAAGAAACCGA 60.203 52.381 0.00 0.00 35.33 4.69
403 404 1.235724 GGTGGTGGAGAAAGAAACCG 58.764 55.000 0.00 0.00 35.33 4.44
404 405 1.235724 CGGTGGTGGAGAAAGAAACC 58.764 55.000 0.00 0.00 0.00 3.27
405 406 1.963172 ACGGTGGTGGAGAAAGAAAC 58.037 50.000 0.00 0.00 0.00 2.78
406 407 2.092861 TCAACGGTGGTGGAGAAAGAAA 60.093 45.455 0.00 0.00 0.00 2.52
409 410 1.226746 GTCAACGGTGGTGGAGAAAG 58.773 55.000 0.00 0.00 0.00 2.62
410 411 0.531090 CGTCAACGGTGGTGGAGAAA 60.531 55.000 0.00 0.00 35.37 2.52
411 412 1.068417 CGTCAACGGTGGTGGAGAA 59.932 57.895 0.00 0.00 35.37 2.87
412 413 1.829096 TCGTCAACGGTGGTGGAGA 60.829 57.895 0.00 0.00 40.29 3.71
413 414 1.663702 GTCGTCAACGGTGGTGGAG 60.664 63.158 0.00 0.00 40.29 3.86
414 415 2.418356 GTCGTCAACGGTGGTGGA 59.582 61.111 0.00 0.00 40.29 4.02
415 416 2.663852 GGTCGTCAACGGTGGTGG 60.664 66.667 0.00 0.00 40.29 4.61
416 417 1.954146 CTGGTCGTCAACGGTGGTG 60.954 63.158 0.00 0.00 40.29 4.17
417 418 2.420043 CTGGTCGTCAACGGTGGT 59.580 61.111 0.00 0.00 40.29 4.16
419 420 1.954146 CACCTGGTCGTCAACGGTG 60.954 63.158 0.00 0.00 39.14 4.94
420 421 2.083835 CTCACCTGGTCGTCAACGGT 62.084 60.000 0.00 0.00 40.29 4.83
421 422 1.372997 CTCACCTGGTCGTCAACGG 60.373 63.158 0.00 0.00 40.29 4.44
423 424 1.668151 GGCTCACCTGGTCGTCAAC 60.668 63.158 0.00 0.00 0.00 3.18
424 425 2.741092 GGCTCACCTGGTCGTCAA 59.259 61.111 0.00 0.00 0.00 3.18
435 436 2.896443 CGGGAGGAAGAGGCTCAC 59.104 66.667 18.26 10.08 0.00 3.51
436 437 3.077556 GCGGGAGGAAGAGGCTCA 61.078 66.667 18.26 0.00 0.00 4.26
437 438 3.077556 TGCGGGAGGAAGAGGCTC 61.078 66.667 6.34 6.34 0.00 4.70
438 439 3.080121 CTGCGGGAGGAAGAGGCT 61.080 66.667 0.00 0.00 0.00 4.58
439 440 3.077556 TCTGCGGGAGGAAGAGGC 61.078 66.667 0.00 0.00 0.00 4.70
440 441 2.726351 GGTCTGCGGGAGGAAGAGG 61.726 68.421 0.00 0.00 0.00 3.69
441 442 1.984570 TGGTCTGCGGGAGGAAGAG 60.985 63.158 0.00 0.00 0.00 2.85
442 443 2.119611 TGGTCTGCGGGAGGAAGA 59.880 61.111 0.00 0.00 0.00 2.87
443 444 2.266055 GTGGTCTGCGGGAGGAAG 59.734 66.667 0.00 0.00 0.00 3.46
444 445 3.319198 GGTGGTCTGCGGGAGGAA 61.319 66.667 0.00 0.00 0.00 3.36
446 447 3.391665 GATGGTGGTCTGCGGGAGG 62.392 68.421 0.00 0.00 0.00 4.30
447 448 2.187946 GATGGTGGTCTGCGGGAG 59.812 66.667 0.00 0.00 0.00 4.30
448 449 3.399181 GGATGGTGGTCTGCGGGA 61.399 66.667 0.00 0.00 0.00 5.14
449 450 3.391665 GAGGATGGTGGTCTGCGGG 62.392 68.421 0.00 0.00 0.00 6.13
451 452 1.153489 CAGAGGATGGTGGTCTGCG 60.153 63.158 0.00 0.00 31.83 5.18
452 453 4.950479 CAGAGGATGGTGGTCTGC 57.050 61.111 0.00 0.00 31.83 4.26
453 454 1.222936 GGCAGAGGATGGTGGTCTG 59.777 63.158 0.00 0.00 40.66 3.51
454 455 1.229625 TGGCAGAGGATGGTGGTCT 60.230 57.895 0.00 0.00 0.00 3.85
455 456 1.078143 GTGGCAGAGGATGGTGGTC 60.078 63.158 0.00 0.00 0.00 4.02
456 457 1.136329 AAGTGGCAGAGGATGGTGGT 61.136 55.000 0.00 0.00 0.00 4.16
457 458 0.393537 GAAGTGGCAGAGGATGGTGG 60.394 60.000 0.00 0.00 0.00 4.61
458 459 0.617413 AGAAGTGGCAGAGGATGGTG 59.383 55.000 0.00 0.00 0.00 4.17
459 460 1.280421 GAAGAAGTGGCAGAGGATGGT 59.720 52.381 0.00 0.00 0.00 3.55
460 461 1.741732 CGAAGAAGTGGCAGAGGATGG 60.742 57.143 0.00 0.00 0.00 3.51
462 463 0.107945 GCGAAGAAGTGGCAGAGGAT 60.108 55.000 0.00 0.00 0.00 3.24
463 464 1.188219 AGCGAAGAAGTGGCAGAGGA 61.188 55.000 0.00 0.00 32.37 3.71
464 465 0.532573 TAGCGAAGAAGTGGCAGAGG 59.467 55.000 0.00 0.00 32.37 3.69
465 466 1.919918 CTAGCGAAGAAGTGGCAGAG 58.080 55.000 0.00 0.00 32.37 3.35
467 468 0.108424 AGCTAGCGAAGAAGTGGCAG 60.108 55.000 9.55 0.00 32.37 4.85
469 470 0.108615 TCAGCTAGCGAAGAAGTGGC 60.109 55.000 9.55 0.00 0.00 5.01
471 472 1.276415 GCTCAGCTAGCGAAGAAGTG 58.724 55.000 19.71 7.44 42.53 3.16
472 473 3.731295 GCTCAGCTAGCGAAGAAGT 57.269 52.632 19.71 0.00 42.53 3.01
481 482 2.344950 CCACAAGACTTGCTCAGCTAG 58.655 52.381 15.24 6.56 37.42 3.42
482 483 1.609061 GCCACAAGACTTGCTCAGCTA 60.609 52.381 15.24 0.00 0.00 3.32
483 484 0.888285 GCCACAAGACTTGCTCAGCT 60.888 55.000 15.24 0.00 0.00 4.24
484 485 1.168407 TGCCACAAGACTTGCTCAGC 61.168 55.000 15.24 12.55 0.00 4.26
485 486 0.590195 GTGCCACAAGACTTGCTCAG 59.410 55.000 15.24 2.91 0.00 3.35
487 488 0.871057 GAGTGCCACAAGACTTGCTC 59.129 55.000 15.24 9.18 0.00 4.26
488 489 0.181114 TGAGTGCCACAAGACTTGCT 59.819 50.000 15.24 3.63 0.00 3.91
498 499 0.324943 ACTACCATGGTGAGTGCCAC 59.675 55.000 28.17 0.00 41.94 5.01
499 500 1.064003 AACTACCATGGTGAGTGCCA 58.936 50.000 28.17 4.19 43.48 4.92
500 501 2.084546 GAAACTACCATGGTGAGTGCC 58.915 52.381 28.17 15.71 0.00 5.01
501 502 3.059352 AGAAACTACCATGGTGAGTGC 57.941 47.619 28.17 18.67 0.00 4.40
502 503 4.214119 CACAAGAAACTACCATGGTGAGTG 59.786 45.833 28.17 17.45 0.00 3.51
503 504 4.141482 ACACAAGAAACTACCATGGTGAGT 60.141 41.667 28.17 21.29 0.00 3.41
504 505 4.389374 ACACAAGAAACTACCATGGTGAG 58.611 43.478 28.17 20.68 0.00 3.51
507 508 5.299279 CAGAAACACAAGAAACTACCATGGT 59.701 40.000 23.55 23.55 0.00 3.55
508 509 5.762045 CAGAAACACAAGAAACTACCATGG 58.238 41.667 11.19 11.19 0.00 3.66
509 510 5.009010 AGCAGAAACACAAGAAACTACCATG 59.991 40.000 0.00 0.00 0.00 3.66
510 511 5.133221 AGCAGAAACACAAGAAACTACCAT 58.867 37.500 0.00 0.00 0.00 3.55
511 512 4.523083 AGCAGAAACACAAGAAACTACCA 58.477 39.130 0.00 0.00 0.00 3.25
513 514 6.688813 CAGAAAGCAGAAACACAAGAAACTAC 59.311 38.462 0.00 0.00 0.00 2.73
515 516 5.415701 TCAGAAAGCAGAAACACAAGAAACT 59.584 36.000 0.00 0.00 0.00 2.66
519 520 5.895636 TTTCAGAAAGCAGAAACACAAGA 57.104 34.783 0.00 0.00 0.00 3.02
520 521 6.034256 CAGTTTTCAGAAAGCAGAAACACAAG 59.966 38.462 11.86 0.00 33.82 3.16
522 523 5.182950 TCAGTTTTCAGAAAGCAGAAACACA 59.817 36.000 11.86 0.00 33.82 3.72
523 524 5.640732 TCAGTTTTCAGAAAGCAGAAACAC 58.359 37.500 11.86 0.00 33.82 3.32
524 525 5.895636 TCAGTTTTCAGAAAGCAGAAACA 57.104 34.783 11.86 0.00 33.82 2.83
527 528 6.115446 TCTCTTCAGTTTTCAGAAAGCAGAA 58.885 36.000 14.23 14.23 0.00 3.02
528 529 5.674525 TCTCTTCAGTTTTCAGAAAGCAGA 58.325 37.500 11.86 6.62 0.00 4.26
529 530 5.998454 TCTCTTCAGTTTTCAGAAAGCAG 57.002 39.130 11.86 4.37 0.00 4.24
530 531 6.769822 AGAATCTCTTCAGTTTTCAGAAAGCA 59.230 34.615 11.86 0.00 33.56 3.91
531 532 7.200778 AGAATCTCTTCAGTTTTCAGAAAGC 57.799 36.000 1.55 1.55 33.56 3.51
533 534 9.793252 CAAAAGAATCTCTTCAGTTTTCAGAAA 57.207 29.630 0.00 0.00 35.27 2.52
535 536 8.511604 ACAAAAGAATCTCTTCAGTTTTCAGA 57.488 30.769 0.00 0.00 35.27 3.27
536 537 7.585573 CGACAAAAGAATCTCTTCAGTTTTCAG 59.414 37.037 0.00 0.00 35.27 3.02
539 540 6.202226 GCGACAAAAGAATCTCTTCAGTTTT 58.798 36.000 0.00 0.00 35.27 2.43
540 541 5.278022 GGCGACAAAAGAATCTCTTCAGTTT 60.278 40.000 0.00 0.00 35.27 2.66
541 542 4.214332 GGCGACAAAAGAATCTCTTCAGTT 59.786 41.667 0.00 0.00 35.27 3.16
542 543 3.748568 GGCGACAAAAGAATCTCTTCAGT 59.251 43.478 0.00 0.00 35.27 3.41
548 549 2.600867 CTCGAGGCGACAAAAGAATCTC 59.399 50.000 3.91 0.00 0.00 2.75
550 551 2.338500 ACTCGAGGCGACAAAAGAATC 58.662 47.619 18.41 0.00 0.00 2.52
553 554 1.864711 CAAACTCGAGGCGACAAAAGA 59.135 47.619 18.41 0.00 0.00 2.52
554 555 1.069906 CCAAACTCGAGGCGACAAAAG 60.070 52.381 18.41 0.00 0.00 2.27
555 556 0.941542 CCAAACTCGAGGCGACAAAA 59.058 50.000 18.41 0.00 0.00 2.44
556 557 0.105224 TCCAAACTCGAGGCGACAAA 59.895 50.000 18.41 0.00 0.00 2.83
557 558 0.105224 TTCCAAACTCGAGGCGACAA 59.895 50.000 18.41 0.74 0.00 3.18
558 559 0.320374 ATTCCAAACTCGAGGCGACA 59.680 50.000 18.41 0.00 0.00 4.35
559 560 0.721718 CATTCCAAACTCGAGGCGAC 59.278 55.000 18.41 0.00 0.00 5.19
560 561 1.019278 GCATTCCAAACTCGAGGCGA 61.019 55.000 18.41 3.15 0.00 5.54
561 562 1.021390 AGCATTCCAAACTCGAGGCG 61.021 55.000 18.41 4.16 0.00 5.52
563 564 3.077359 AGAAAGCATTCCAAACTCGAGG 58.923 45.455 18.41 0.00 36.12 4.63
564 565 4.453819 AGAAGAAAGCATTCCAAACTCGAG 59.546 41.667 11.84 11.84 36.12 4.04
565 566 4.214119 CAGAAGAAAGCATTCCAAACTCGA 59.786 41.667 0.00 0.00 36.12 4.04
568 569 4.038402 CCACAGAAGAAAGCATTCCAAACT 59.962 41.667 0.00 0.00 36.12 2.66
570 571 3.321682 CCCACAGAAGAAAGCATTCCAAA 59.678 43.478 0.00 0.00 36.12 3.28
571 572 2.892852 CCCACAGAAGAAAGCATTCCAA 59.107 45.455 0.00 0.00 36.12 3.53
573 574 2.229784 CACCCACAGAAGAAAGCATTCC 59.770 50.000 0.00 0.00 36.12 3.01
574 575 2.352127 GCACCCACAGAAGAAAGCATTC 60.352 50.000 0.00 0.00 35.70 2.67
575 576 1.615392 GCACCCACAGAAGAAAGCATT 59.385 47.619 0.00 0.00 0.00 3.56
576 577 1.251251 GCACCCACAGAAGAAAGCAT 58.749 50.000 0.00 0.00 0.00 3.79
577 578 0.823356 GGCACCCACAGAAGAAAGCA 60.823 55.000 0.00 0.00 0.00 3.91
589 590 2.063015 AAAGACCATCGTGGCACCCA 62.063 55.000 12.86 0.00 42.67 4.51
592 593 0.605319 TCCAAAGACCATCGTGGCAC 60.605 55.000 7.79 7.79 42.67 5.01
593 594 0.321564 CTCCAAAGACCATCGTGGCA 60.322 55.000 4.23 0.00 42.67 4.92
594 595 1.026718 CCTCCAAAGACCATCGTGGC 61.027 60.000 4.23 0.00 42.67 5.01
595 596 1.026718 GCCTCCAAAGACCATCGTGG 61.027 60.000 2.92 2.92 45.02 4.94
596 597 0.321564 TGCCTCCAAAGACCATCGTG 60.322 55.000 0.00 0.00 0.00 4.35
597 598 0.321653 GTGCCTCCAAAGACCATCGT 60.322 55.000 0.00 0.00 0.00 3.73
598 599 0.036010 AGTGCCTCCAAAGACCATCG 60.036 55.000 0.00 0.00 0.00 3.84
600 601 2.619074 GCTAAGTGCCTCCAAAGACCAT 60.619 50.000 0.00 0.00 35.15 3.55
601 602 1.271379 GCTAAGTGCCTCCAAAGACCA 60.271 52.381 0.00 0.00 35.15 4.02
602 603 1.454201 GCTAAGTGCCTCCAAAGACC 58.546 55.000 0.00 0.00 35.15 3.85
610 611 7.799315 AGATATAAATCCATGGCTAAGTGCCTC 60.799 40.741 6.96 0.00 46.60 4.70
611 612 6.012157 AGATATAAATCCATGGCTAAGTGCCT 60.012 38.462 6.96 0.00 46.60 4.75
613 614 6.881065 TGAGATATAAATCCATGGCTAAGTGC 59.119 38.462 6.96 0.00 35.21 4.40
614 615 7.065563 GCTGAGATATAAATCCATGGCTAAGTG 59.934 40.741 6.96 0.00 31.98 3.16
615 616 7.108847 GCTGAGATATAAATCCATGGCTAAGT 58.891 38.462 6.96 0.00 31.98 2.24
616 617 6.257411 CGCTGAGATATAAATCCATGGCTAAG 59.743 42.308 6.96 0.00 31.98 2.18
617 618 6.108687 CGCTGAGATATAAATCCATGGCTAA 58.891 40.000 6.96 0.00 31.98 3.09
618 619 5.664457 CGCTGAGATATAAATCCATGGCTA 58.336 41.667 6.96 0.00 31.98 3.93
621 622 4.256110 TGCGCTGAGATATAAATCCATGG 58.744 43.478 9.73 4.97 31.98 3.66
622 623 4.201792 GCTGCGCTGAGATATAAATCCATG 60.202 45.833 19.32 0.00 31.98 3.66
624 625 3.329386 GCTGCGCTGAGATATAAATCCA 58.671 45.455 19.32 0.00 31.98 3.41
626 627 3.329386 TGGCTGCGCTGAGATATAAATC 58.671 45.455 19.32 0.00 0.00 2.17
628 629 2.908688 TGGCTGCGCTGAGATATAAA 57.091 45.000 19.32 0.00 0.00 1.40
629 630 2.613725 CCATGGCTGCGCTGAGATATAA 60.614 50.000 19.32 0.00 0.00 0.98
630 631 1.066645 CCATGGCTGCGCTGAGATATA 60.067 52.381 19.32 0.00 0.00 0.86
632 633 1.070275 CCATGGCTGCGCTGAGATA 59.930 57.895 19.32 0.70 0.00 1.98
645 646 1.077212 CCTTGTCTCCTGCCCATGG 60.077 63.158 4.14 4.14 0.00 3.66
646 647 1.751927 GCCTTGTCTCCTGCCCATG 60.752 63.158 0.00 0.00 0.00 3.66
647 648 2.679716 GCCTTGTCTCCTGCCCAT 59.320 61.111 0.00 0.00 0.00 4.00
650 651 1.751927 CATGGCCTTGTCTCCTGCC 60.752 63.158 10.48 0.00 44.27 4.85
651 652 0.747283 CTCATGGCCTTGTCTCCTGC 60.747 60.000 17.54 0.00 0.00 4.85
652 653 0.747283 GCTCATGGCCTTGTCTCCTG 60.747 60.000 17.54 4.85 34.27 3.86
653 654 1.203441 TGCTCATGGCCTTGTCTCCT 61.203 55.000 17.54 0.00 40.92 3.69
655 656 1.375098 GCTGCTCATGGCCTTGTCTC 61.375 60.000 17.54 8.95 40.92 3.36
656 657 1.378250 GCTGCTCATGGCCTTGTCT 60.378 57.895 17.54 0.00 40.92 3.41
657 658 2.413142 GGCTGCTCATGGCCTTGTC 61.413 63.158 17.54 11.43 44.48 3.18
658 659 2.362120 GGCTGCTCATGGCCTTGT 60.362 61.111 17.54 0.00 44.48 3.16
663 664 0.389426 CAACTTTGGCTGCTCATGGC 60.389 55.000 0.00 0.00 42.22 4.40
664 665 0.963962 ACAACTTTGGCTGCTCATGG 59.036 50.000 0.00 0.00 0.00 3.66
665 666 1.933500 GCACAACTTTGGCTGCTCATG 60.934 52.381 0.00 0.00 30.27 3.07
666 667 0.316204 GCACAACTTTGGCTGCTCAT 59.684 50.000 0.00 0.00 30.27 2.90
667 668 1.735360 GCACAACTTTGGCTGCTCA 59.265 52.632 0.00 0.00 30.27 4.26
669 670 2.848858 CGGCACAACTTTGGCTGCT 61.849 57.895 0.00 0.00 39.89 4.24
670 671 2.355009 CGGCACAACTTTGGCTGC 60.355 61.111 0.00 0.00 39.89 5.25
671 672 2.336088 CCGGCACAACTTTGGCTG 59.664 61.111 0.00 0.04 39.89 4.85
673 674 3.989787 CCCCGGCACAACTTTGGC 61.990 66.667 0.00 0.00 38.68 4.52
674 675 3.989787 GCCCCGGCACAACTTTGG 61.990 66.667 0.00 0.00 41.49 3.28
690 691 2.335011 GAACACTTGCCCGGTTGC 59.665 61.111 0.00 0.00 0.00 4.17
691 692 2.637025 CGAACACTTGCCCGGTTG 59.363 61.111 0.00 0.00 0.00 3.77
692 693 2.593436 CCGAACACTTGCCCGGTT 60.593 61.111 0.00 0.00 37.40 4.44
695 696 3.254014 CTTGCCGAACACTTGCCCG 62.254 63.158 0.00 0.00 0.00 6.13
696 697 2.193536 ACTTGCCGAACACTTGCCC 61.194 57.895 0.00 0.00 0.00 5.36
697 698 1.008538 CACTTGCCGAACACTTGCC 60.009 57.895 0.00 0.00 0.00 4.52
698 699 1.658409 GCACTTGCCGAACACTTGC 60.658 57.895 0.00 0.00 34.31 4.01
699 700 0.311790 ATGCACTTGCCGAACACTTG 59.688 50.000 0.00 0.00 41.18 3.16
700 701 0.311790 CATGCACTTGCCGAACACTT 59.688 50.000 0.00 0.00 41.18 3.16
701 702 1.951510 CATGCACTTGCCGAACACT 59.048 52.632 0.00 0.00 41.18 3.55
702 703 1.730547 GCATGCACTTGCCGAACAC 60.731 57.895 14.21 0.00 41.18 3.32
703 704 2.644418 GCATGCACTTGCCGAACA 59.356 55.556 14.21 0.00 41.18 3.18
704 705 2.502510 CGCATGCACTTGCCGAAC 60.503 61.111 19.57 0.00 39.52 3.95
706 707 3.948961 TAGCGCATGCACTTGCCGA 62.949 57.895 19.57 1.05 46.23 5.54
708 709 2.100991 GTAGCGCATGCACTTGCC 59.899 61.111 19.57 1.36 46.23 4.52
709 710 1.996786 ATGGTAGCGCATGCACTTGC 61.997 55.000 19.57 12.89 46.23 4.01
710 711 0.248336 CATGGTAGCGCATGCACTTG 60.248 55.000 19.57 4.58 46.23 3.16
712 713 3.817787 CATGGTAGCGCATGCACT 58.182 55.556 19.57 16.50 46.23 4.40
729 730 1.153842 GCAGTATTTTGCGGTGGGC 60.154 57.895 0.00 0.00 43.96 5.36
768 2996 0.682209 AGTGATCAGCCATTGTGCCC 60.682 55.000 0.00 0.00 0.00 5.36
769 2997 0.737219 GAGTGATCAGCCATTGTGCC 59.263 55.000 0.00 0.00 0.00 5.01
817 3060 6.800408 CAGACAATGTGATCACTGATTTTGAC 59.200 38.462 25.55 18.31 0.00 3.18
869 13192 1.281287 AGACAATGCCATGAGTGCTCT 59.719 47.619 0.00 0.00 0.00 4.09
918 13241 2.360801 AGTTTACATGTGTGGGTTGTGC 59.639 45.455 9.11 0.00 0.00 4.57
935 13258 1.464198 AGAGGGGTCAGGGCAGTTT 60.464 57.895 0.00 0.00 0.00 2.66
936 13259 1.920835 GAGAGGGGTCAGGGCAGTT 60.921 63.158 0.00 0.00 0.00 3.16
947 13270 5.602291 TTATAGTAGAAGGGAGAGAGGGG 57.398 47.826 0.00 0.00 0.00 4.79
956 13279 5.251700 AGGCCATGGATTTATAGTAGAAGGG 59.748 44.000 18.40 0.00 0.00 3.95
1268 13627 0.591659 CTCACCGAAGACTGTCGTGA 59.408 55.000 13.21 13.21 39.43 4.35
1325 13687 3.991924 ATCCTGCCTCCCTCGCTGT 62.992 63.158 0.00 0.00 0.00 4.40
1359 13721 1.079405 ATACTCCACAACCACGGCG 60.079 57.895 4.80 4.80 0.00 6.46
1455 13817 1.721664 CCACCGATGCATCTTGGCTG 61.722 60.000 23.83 17.48 34.04 4.85
1594 13956 9.884636 TCCGAGAGAAAAAGATATATTTTGTGA 57.115 29.630 8.74 0.00 32.81 3.58
1618 13980 4.103311 AGTGGCCAGGTATTAGATTTCTCC 59.897 45.833 5.11 0.00 0.00 3.71
1647 14009 2.539302 AGGCAAATAATGTGCTTGGGT 58.461 42.857 0.00 0.00 41.88 4.51
1667 14029 6.395426 TTCTTCAGTACTTGGACGAACTAA 57.605 37.500 0.00 0.00 0.00 2.24
1676 14038 9.706691 TTTGTATCTACTTTCTTCAGTACTTGG 57.293 33.333 0.00 0.00 0.00 3.61
1697 14060 2.229792 CCTTTGAGCCAGCAGTTTGTA 58.770 47.619 0.00 0.00 0.00 2.41
1709 14072 0.169009 GACATTCACGCCCTTTGAGC 59.831 55.000 0.00 0.00 0.00 4.26
1738 14101 9.502145 GACATCAACGCATATAAAAGAATTTCA 57.498 29.630 0.00 0.00 37.28 2.69
1751 14114 3.253230 CTGTCACTGACATCAACGCATA 58.747 45.455 12.34 0.00 41.94 3.14
1752 14115 2.071540 CTGTCACTGACATCAACGCAT 58.928 47.619 12.34 0.00 41.94 4.73
1767 14130 4.687215 GCCTCTGCACGCCTGTCA 62.687 66.667 0.00 0.00 37.47 3.58
1775 14138 1.089920 AATCATCAACGCCTCTGCAC 58.910 50.000 0.00 0.00 37.32 4.57
1881 14264 2.843912 ATTTCCCAGGCAGGCTTCGG 62.844 60.000 0.00 0.00 35.39 4.30
1882 14265 1.379044 ATTTCCCAGGCAGGCTTCG 60.379 57.895 0.00 0.00 35.39 3.79
1974 14403 1.118965 TGAAGCCCAGGACTCAACGA 61.119 55.000 0.00 0.00 0.00 3.85
1986 14415 0.915364 AGACTCCCAGAATGAAGCCC 59.085 55.000 0.00 0.00 39.69 5.19
2091 14521 4.254492 CGGCTAGAGGGCTTATTAATTCC 58.746 47.826 0.00 0.00 38.46 3.01
2094 14524 3.261137 GTCCGGCTAGAGGGCTTATTAAT 59.739 47.826 0.00 0.00 38.46 1.40
2095 14525 2.631545 GTCCGGCTAGAGGGCTTATTAA 59.368 50.000 0.00 0.00 38.46 1.40
2096 14526 2.158355 AGTCCGGCTAGAGGGCTTATTA 60.158 50.000 6.04 0.00 41.69 0.98
2112 14542 1.996191 GCTTTTCTGCAGACTAGTCCG 59.004 52.381 18.03 10.64 0.00 4.79
2160 14590 3.631145 TCTTGAATCACAACAAGCAGC 57.369 42.857 0.00 0.00 41.91 5.25
2217 14647 6.137559 TCCTAGTTTGTACCCAACCAAAATT 58.862 36.000 0.00 0.00 32.77 1.82
2389 14850 7.229306 GCATACAAGAATGATGGGTGATTTCTA 59.771 37.037 0.00 0.00 0.00 2.10
2395 14856 4.233632 TGCATACAAGAATGATGGGTGA 57.766 40.909 0.00 0.00 0.00 4.02
2398 14859 5.587388 AAGTTGCATACAAGAATGATGGG 57.413 39.130 0.00 0.00 36.16 4.00
2401 14862 8.575589 TGTTGTAAAGTTGCATACAAGAATGAT 58.424 29.630 10.19 0.00 41.31 2.45
2431 14892 1.611977 GGAAGGGCTGGTGTGTAAAAC 59.388 52.381 0.00 0.00 0.00 2.43
2574 15045 9.013490 CCGAAGAATTGTTTCATGATTTATCAC 57.987 33.333 0.00 0.00 40.03 3.06
2601 15309 4.383774 TGCGTCTGAAAATAGTTCAACG 57.616 40.909 14.05 14.05 36.73 4.10
2619 15825 3.504863 CCTCATTGTTCTCCATTTTGCG 58.495 45.455 0.00 0.00 0.00 4.85
2703 15914 4.147321 CCTTGCCAATATCCAAGCTGTAT 58.853 43.478 0.00 0.00 37.66 2.29
2766 15977 3.243336 GCTTGCTCAGAAGAAATGCTTG 58.757 45.455 0.00 0.00 36.83 4.01
2793 16004 0.104855 GATGCAGCGGTGGAGTATGA 59.895 55.000 17.54 0.00 0.00 2.15
2894 16111 0.679002 TCCCCTTGACGTACCTCGAG 60.679 60.000 5.13 5.13 42.86 4.04
2923 16140 3.665515 TACACGGCCGATGGGAGGA 62.666 63.158 35.90 7.76 34.06 3.71
2969 16186 0.599060 CATGCTGCACAACATCACCA 59.401 50.000 3.57 0.00 0.00 4.17
3023 16240 3.667497 CTCAGTTAGTGAGCAAGTGGA 57.333 47.619 3.96 0.00 46.41 4.02
3036 16253 2.631062 TCCCAAAAGACTCGCTCAGTTA 59.369 45.455 0.00 0.00 34.41 2.24
3045 16262 3.871594 CCACGATACATCCCAAAAGACTC 59.128 47.826 0.00 0.00 0.00 3.36
3051 16268 0.621082 TGGCCACGATACATCCCAAA 59.379 50.000 0.00 0.00 0.00 3.28
3064 16281 0.318955 GAACACACAAGCATGGCCAC 60.319 55.000 8.16 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.