Multiple sequence alignment - TraesCS5B01G345200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G345200 chr5B 100.000 2726 0 0 1 2726 528152632 528149907 0.000000e+00 5035.0
1 TraesCS5B01G345200 chr5B 92.510 1028 56 6 1704 2726 170092831 170091820 0.000000e+00 1452.0
2 TraesCS5B01G345200 chr5B 79.756 410 24 22 707 1099 528381663 528381296 2.710000e-60 243.0
3 TraesCS5B01G345200 chr5B 96.040 101 3 1 1 100 125541269 125541169 2.170000e-36 163.0
4 TraesCS5B01G345200 chr5B 96.040 101 3 1 1 100 366851795 366851895 2.170000e-36 163.0
5 TraesCS5B01G345200 chr3D 88.547 1039 92 21 1703 2723 274667593 274668622 0.000000e+00 1234.0
6 TraesCS5B01G345200 chr1D 88.309 1035 91 22 1704 2718 411538403 411539427 0.000000e+00 1214.0
7 TraesCS5B01G345200 chr6B 88.000 1050 90 27 1700 2723 453120888 453121927 0.000000e+00 1208.0
8 TraesCS5B01G345200 chr6B 96.040 101 3 1 1 100 543625062 543625162 2.170000e-36 163.0
9 TraesCS5B01G345200 chr6B 100.000 31 0 0 112 142 687528897 687528927 1.050000e-04 58.4
10 TraesCS5B01G345200 chr7B 88.000 1050 89 29 1704 2726 748380916 748379877 0.000000e+00 1206.0
11 TraesCS5B01G345200 chr7B 87.775 1047 95 24 1704 2726 749484437 749483400 0.000000e+00 1194.0
12 TraesCS5B01G345200 chr7B 96.939 98 3 0 6 103 632274058 632274155 6.040000e-37 165.0
13 TraesCS5B01G345200 chr7B 96.040 101 3 1 1 100 134941538 134941438 2.170000e-36 163.0
14 TraesCS5B01G345200 chr4A 88.038 1045 92 24 1704 2723 243217525 243218561 0.000000e+00 1206.0
15 TraesCS5B01G345200 chr4A 90.598 117 9 2 1 115 652845764 652845648 1.310000e-33 154.0
16 TraesCS5B01G345200 chr3A 87.943 1045 93 24 1704 2723 252755328 252756364 0.000000e+00 1201.0
17 TraesCS5B01G345200 chrUn 94.663 712 38 0 2012 2723 374287606 374288317 0.000000e+00 1105.0
18 TraesCS5B01G345200 chrUn 92.619 691 51 0 2033 2723 45979230 45979920 0.000000e+00 994.0
19 TraesCS5B01G345200 chr5A 90.741 702 33 16 650 1344 548927617 548926941 0.000000e+00 907.0
20 TraesCS5B01G345200 chr5A 92.077 366 29 0 1337 1702 548926074 548925709 1.450000e-142 516.0
21 TraesCS5B01G345200 chr5D 92.236 322 22 2 925 1243 434974326 434974005 1.150000e-123 453.0
22 TraesCS5B01G345200 chr5D 91.205 307 27 0 1398 1704 434935016 434934710 4.200000e-113 418.0
23 TraesCS5B01G345200 chr5D 93.567 171 11 0 1240 1410 434935648 434935478 3.480000e-64 255.0
24 TraesCS5B01G345200 chr4B 96.040 101 3 1 1 100 33743044 33742944 2.170000e-36 163.0
25 TraesCS5B01G345200 chr4B 96.040 101 3 1 1 100 330634689 330634789 2.170000e-36 163.0
26 TraesCS5B01G345200 chr1B 96.040 101 3 1 1 100 412965676 412965776 2.170000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G345200 chr5B 528149907 528152632 2725 True 5035.0 5035 100.000 1 2726 1 chr5B.!!$R3 2725
1 TraesCS5B01G345200 chr5B 170091820 170092831 1011 True 1452.0 1452 92.510 1704 2726 1 chr5B.!!$R2 1022
2 TraesCS5B01G345200 chr3D 274667593 274668622 1029 False 1234.0 1234 88.547 1703 2723 1 chr3D.!!$F1 1020
3 TraesCS5B01G345200 chr1D 411538403 411539427 1024 False 1214.0 1214 88.309 1704 2718 1 chr1D.!!$F1 1014
4 TraesCS5B01G345200 chr6B 453120888 453121927 1039 False 1208.0 1208 88.000 1700 2723 1 chr6B.!!$F1 1023
5 TraesCS5B01G345200 chr7B 748379877 748380916 1039 True 1206.0 1206 88.000 1704 2726 1 chr7B.!!$R2 1022
6 TraesCS5B01G345200 chr7B 749483400 749484437 1037 True 1194.0 1194 87.775 1704 2726 1 chr7B.!!$R3 1022
7 TraesCS5B01G345200 chr4A 243217525 243218561 1036 False 1206.0 1206 88.038 1704 2723 1 chr4A.!!$F1 1019
8 TraesCS5B01G345200 chr3A 252755328 252756364 1036 False 1201.0 1201 87.943 1704 2723 1 chr3A.!!$F1 1019
9 TraesCS5B01G345200 chrUn 374287606 374288317 711 False 1105.0 1105 94.663 2012 2723 1 chrUn.!!$F2 711
10 TraesCS5B01G345200 chrUn 45979230 45979920 690 False 994.0 994 92.619 2033 2723 1 chrUn.!!$F1 690
11 TraesCS5B01G345200 chr5A 548925709 548927617 1908 True 711.5 907 91.409 650 1702 2 chr5A.!!$R1 1052
12 TraesCS5B01G345200 chr5D 434934710 434935648 938 True 336.5 418 92.386 1240 1704 2 chr5D.!!$R2 464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 648 0.031585 TCAACGAAGGTGTCCACGAG 59.968 55.0 10.77 0.0 32.3 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 3213 1.303309 CAATTCCTCCCAGATCGCAC 58.697 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.562912 CCCAATCAGCACACACGC 59.437 61.111 0.00 0.00 0.00 5.34
18 19 2.260154 CCCAATCAGCACACACGCA 61.260 57.895 0.00 0.00 0.00 5.24
19 20 1.588824 CCCAATCAGCACACACGCAT 61.589 55.000 0.00 0.00 0.00 4.73
20 21 0.179181 CCAATCAGCACACACGCATC 60.179 55.000 0.00 0.00 0.00 3.91
21 22 0.800631 CAATCAGCACACACGCATCT 59.199 50.000 0.00 0.00 0.00 2.90
22 23 1.198408 CAATCAGCACACACGCATCTT 59.802 47.619 0.00 0.00 0.00 2.40
23 24 2.385013 ATCAGCACACACGCATCTTA 57.615 45.000 0.00 0.00 0.00 2.10
24 25 2.385013 TCAGCACACACGCATCTTAT 57.615 45.000 0.00 0.00 0.00 1.73
25 26 3.518634 TCAGCACACACGCATCTTATA 57.481 42.857 0.00 0.00 0.00 0.98
26 27 3.447742 TCAGCACACACGCATCTTATAG 58.552 45.455 0.00 0.00 0.00 1.31
27 28 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
28 29 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
29 30 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
30 31 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
31 32 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
32 33 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
33 34 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
34 35 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
35 36 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
36 37 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
37 38 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
38 39 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
39 40 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
40 41 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
41 42 6.373495 GCATCTTATAGCATCACATCCAATGA 59.627 38.462 0.00 0.00 0.00 2.57
42 43 7.625817 GCATCTTATAGCATCACATCCAATGAC 60.626 40.741 0.00 0.00 0.00 3.06
43 44 7.071069 TCTTATAGCATCACATCCAATGACT 57.929 36.000 0.00 0.00 0.00 3.41
44 45 8.193953 TCTTATAGCATCACATCCAATGACTA 57.806 34.615 0.00 0.00 0.00 2.59
45 46 8.819845 TCTTATAGCATCACATCCAATGACTAT 58.180 33.333 0.00 0.00 32.32 2.12
49 50 9.797642 ATAGCATCACATCCAATGACTATAAAA 57.202 29.630 0.00 0.00 0.00 1.52
50 51 8.162878 AGCATCACATCCAATGACTATAAAAG 57.837 34.615 0.00 0.00 0.00 2.27
51 52 7.994911 AGCATCACATCCAATGACTATAAAAGA 59.005 33.333 0.00 0.00 0.00 2.52
52 53 8.790718 GCATCACATCCAATGACTATAAAAGAT 58.209 33.333 0.00 0.00 0.00 2.40
55 56 9.904198 TCACATCCAATGACTATAAAAGATGAA 57.096 29.630 0.00 0.00 35.13 2.57
99 100 9.645059 TCATCTAGATGAGTTCTAACAAAACTG 57.355 33.333 27.93 1.46 42.42 3.16
100 101 9.645059 CATCTAGATGAGTTCTAACAAAACTGA 57.355 33.333 25.78 0.00 41.20 3.41
104 105 8.738645 AGATGAGTTCTAACAAAACTGAAACT 57.261 30.769 0.00 0.00 37.10 2.66
105 106 8.831550 AGATGAGTTCTAACAAAACTGAAACTC 58.168 33.333 0.00 0.00 37.10 3.01
106 107 7.316544 TGAGTTCTAACAAAACTGAAACTCC 57.683 36.000 9.18 0.00 37.10 3.85
107 108 7.110155 TGAGTTCTAACAAAACTGAAACTCCT 58.890 34.615 9.18 0.00 37.10 3.69
108 109 7.610305 TGAGTTCTAACAAAACTGAAACTCCTT 59.390 33.333 9.18 0.00 37.10 3.36
109 110 7.986562 AGTTCTAACAAAACTGAAACTCCTTC 58.013 34.615 0.00 0.00 35.68 3.46
110 111 6.937436 TCTAACAAAACTGAAACTCCTTCC 57.063 37.500 0.00 0.00 32.53 3.46
111 112 6.419791 TCTAACAAAACTGAAACTCCTTCCA 58.580 36.000 0.00 0.00 32.53 3.53
112 113 7.060421 TCTAACAAAACTGAAACTCCTTCCAT 58.940 34.615 0.00 0.00 32.53 3.41
113 114 5.774498 ACAAAACTGAAACTCCTTCCATC 57.226 39.130 0.00 0.00 32.53 3.51
114 115 4.584743 ACAAAACTGAAACTCCTTCCATCC 59.415 41.667 0.00 0.00 32.53 3.51
115 116 4.453480 AAACTGAAACTCCTTCCATCCA 57.547 40.909 0.00 0.00 32.53 3.41
116 117 4.664688 AACTGAAACTCCTTCCATCCAT 57.335 40.909 0.00 0.00 32.53 3.41
117 118 5.779241 AACTGAAACTCCTTCCATCCATA 57.221 39.130 0.00 0.00 32.53 2.74
118 119 5.983333 ACTGAAACTCCTTCCATCCATAT 57.017 39.130 0.00 0.00 32.53 1.78
119 120 6.332976 ACTGAAACTCCTTCCATCCATATT 57.667 37.500 0.00 0.00 32.53 1.28
120 121 7.451731 ACTGAAACTCCTTCCATCCATATTA 57.548 36.000 0.00 0.00 32.53 0.98
121 122 7.872138 ACTGAAACTCCTTCCATCCATATTAA 58.128 34.615 0.00 0.00 32.53 1.40
122 123 8.506083 ACTGAAACTCCTTCCATCCATATTAAT 58.494 33.333 0.00 0.00 32.53 1.40
123 124 9.359653 CTGAAACTCCTTCCATCCATATTAATT 57.640 33.333 0.00 0.00 32.53 1.40
124 125 9.135189 TGAAACTCCTTCCATCCATATTAATTG 57.865 33.333 0.00 0.00 32.53 2.32
125 126 9.136323 GAAACTCCTTCCATCCATATTAATTGT 57.864 33.333 0.00 0.00 0.00 2.71
126 127 9.492730 AAACTCCTTCCATCCATATTAATTGTT 57.507 29.630 0.00 0.00 0.00 2.83
127 128 8.469309 ACTCCTTCCATCCATATTAATTGTTG 57.531 34.615 0.00 0.00 0.00 3.33
128 129 8.281531 ACTCCTTCCATCCATATTAATTGTTGA 58.718 33.333 0.00 0.00 0.00 3.18
129 130 9.305555 CTCCTTCCATCCATATTAATTGTTGAT 57.694 33.333 0.00 0.00 0.00 2.57
130 131 9.081204 TCCTTCCATCCATATTAATTGTTGATG 57.919 33.333 0.00 2.21 0.00 3.07
131 132 9.081204 CCTTCCATCCATATTAATTGTTGATGA 57.919 33.333 13.89 3.73 31.98 2.92
211 212 8.827177 AATATAATTAGTCCTTGCGATTCGAA 57.173 30.769 10.88 0.00 0.00 3.71
212 213 9.436957 AATATAATTAGTCCTTGCGATTCGAAT 57.563 29.630 11.20 11.20 0.00 3.34
217 218 7.812309 TTAGTCCTTGCGATTCGAATATATG 57.188 36.000 11.38 2.86 0.00 1.78
218 219 6.025749 AGTCCTTGCGATTCGAATATATGA 57.974 37.500 11.38 0.85 0.00 2.15
219 220 6.634805 AGTCCTTGCGATTCGAATATATGAT 58.365 36.000 11.38 0.00 0.00 2.45
220 221 7.099764 AGTCCTTGCGATTCGAATATATGATT 58.900 34.615 11.38 0.00 0.00 2.57
221 222 8.251026 AGTCCTTGCGATTCGAATATATGATTA 58.749 33.333 11.38 0.00 0.00 1.75
222 223 9.035607 GTCCTTGCGATTCGAATATATGATTAT 57.964 33.333 11.38 0.00 0.00 1.28
223 224 9.599866 TCCTTGCGATTCGAATATATGATTATT 57.400 29.630 11.38 0.00 0.00 1.40
226 227 9.986833 TTGCGATTCGAATATATGATTATTTGG 57.013 29.630 11.38 0.00 0.00 3.28
227 228 8.122330 TGCGATTCGAATATATGATTATTTGGC 58.878 33.333 11.38 0.00 0.00 4.52
228 229 8.338259 GCGATTCGAATATATGATTATTTGGCT 58.662 33.333 11.38 0.00 0.00 4.75
234 235 9.702726 CGAATATATGATTATTTGGCTAAACCG 57.297 33.333 0.00 0.00 43.94 4.44
241 242 8.745464 TGATTATTTGGCTAAACCGTAAAAAC 57.255 30.769 0.00 0.00 43.94 2.43
242 243 8.578151 TGATTATTTGGCTAAACCGTAAAAACT 58.422 29.630 0.00 0.00 43.94 2.66
243 244 8.751302 ATTATTTGGCTAAACCGTAAAAACTG 57.249 30.769 0.00 0.00 43.94 3.16
244 245 3.629438 TGGCTAAACCGTAAAAACTGC 57.371 42.857 0.00 0.00 43.94 4.40
245 246 3.215975 TGGCTAAACCGTAAAAACTGCT 58.784 40.909 0.00 0.00 43.94 4.24
246 247 3.251487 TGGCTAAACCGTAAAAACTGCTC 59.749 43.478 0.00 0.00 43.94 4.26
247 248 3.251487 GGCTAAACCGTAAAAACTGCTCA 59.749 43.478 0.00 0.00 0.00 4.26
248 249 4.216731 GCTAAACCGTAAAAACTGCTCAC 58.783 43.478 0.00 0.00 0.00 3.51
249 250 3.328237 AAACCGTAAAAACTGCTCACG 57.672 42.857 0.00 0.00 0.00 4.35
250 251 0.584876 ACCGTAAAAACTGCTCACGC 59.415 50.000 0.00 0.00 0.00 5.34
251 252 0.584396 CCGTAAAAACTGCTCACGCA 59.416 50.000 0.00 0.00 45.60 5.24
259 260 2.749682 TGCTCACGCAGGGATGTT 59.250 55.556 0.00 0.00 42.25 2.71
260 261 1.672030 TGCTCACGCAGGGATGTTG 60.672 57.895 0.00 0.00 42.25 3.33
261 262 3.044059 GCTCACGCAGGGATGTTGC 62.044 63.158 0.00 0.00 38.18 4.17
262 263 1.376424 CTCACGCAGGGATGTTGCT 60.376 57.895 0.00 0.00 39.38 3.91
263 264 0.108186 CTCACGCAGGGATGTTGCTA 60.108 55.000 0.00 0.00 39.38 3.49
264 265 0.391130 TCACGCAGGGATGTTGCTAC 60.391 55.000 0.00 0.00 39.38 3.58
265 266 0.673333 CACGCAGGGATGTTGCTACA 60.673 55.000 2.82 2.82 39.38 2.74
280 281 3.534554 TGCTACATCTGCAACATAGTGG 58.465 45.455 0.00 0.00 37.51 4.00
281 282 2.874701 GCTACATCTGCAACATAGTGGG 59.125 50.000 0.00 0.00 0.00 4.61
282 283 3.432186 GCTACATCTGCAACATAGTGGGA 60.432 47.826 0.00 0.00 0.00 4.37
283 284 3.272574 ACATCTGCAACATAGTGGGAG 57.727 47.619 0.00 0.00 0.00 4.30
284 285 1.945394 CATCTGCAACATAGTGGGAGC 59.055 52.381 0.00 0.00 0.00 4.70
285 286 0.253044 TCTGCAACATAGTGGGAGCC 59.747 55.000 0.00 0.00 0.00 4.70
286 287 0.254178 CTGCAACATAGTGGGAGCCT 59.746 55.000 0.00 0.00 0.00 4.58
287 288 0.035152 TGCAACATAGTGGGAGCCTG 60.035 55.000 0.00 0.00 0.00 4.85
288 289 0.035056 GCAACATAGTGGGAGCCTGT 60.035 55.000 0.00 0.00 0.00 4.00
289 290 2.014068 GCAACATAGTGGGAGCCTGTC 61.014 57.143 0.00 0.00 0.00 3.51
290 291 0.537188 AACATAGTGGGAGCCTGTCG 59.463 55.000 0.00 0.00 0.00 4.35
291 292 1.227380 CATAGTGGGAGCCTGTCGC 60.227 63.158 0.00 0.00 38.63 5.19
292 293 1.685765 ATAGTGGGAGCCTGTCGCA 60.686 57.895 0.00 0.00 45.47 5.10
295 296 4.100084 TGGGAGCCTGTCGCATGG 62.100 66.667 0.00 0.00 42.94 3.66
296 297 4.101448 GGGAGCCTGTCGCATGGT 62.101 66.667 0.00 0.00 41.38 3.55
297 298 2.821366 GGAGCCTGTCGCATGGTG 60.821 66.667 0.00 0.00 41.38 4.17
298 299 2.046892 GAGCCTGTCGCATGGTGT 60.047 61.111 0.00 0.00 41.38 4.16
299 300 2.359107 AGCCTGTCGCATGGTGTG 60.359 61.111 0.00 0.00 41.38 3.82
312 313 4.740822 GTGTGCCTGGCCCGGAAT 62.741 66.667 18.87 0.00 0.00 3.01
313 314 3.012119 TGTGCCTGGCCCGGAATA 61.012 61.111 18.87 0.76 0.00 1.75
314 315 2.516225 GTGCCTGGCCCGGAATAC 60.516 66.667 18.87 8.55 0.00 1.89
315 316 3.012119 TGCCTGGCCCGGAATACA 61.012 61.111 18.87 1.89 0.00 2.29
316 317 2.274104 GCCTGGCCCGGAATACAA 59.726 61.111 18.87 0.00 0.00 2.41
317 318 1.152756 GCCTGGCCCGGAATACAAT 60.153 57.895 18.87 0.00 0.00 2.71
318 319 1.455383 GCCTGGCCCGGAATACAATG 61.455 60.000 18.87 0.00 0.00 2.82
319 320 0.823356 CCTGGCCCGGAATACAATGG 60.823 60.000 7.60 0.00 0.00 3.16
320 321 0.106719 CTGGCCCGGAATACAATGGT 60.107 55.000 0.73 0.00 0.00 3.55
321 322 1.142060 CTGGCCCGGAATACAATGGTA 59.858 52.381 0.73 0.00 0.00 3.25
322 323 1.142060 TGGCCCGGAATACAATGGTAG 59.858 52.381 0.73 0.00 31.88 3.18
323 324 1.235724 GCCCGGAATACAATGGTAGC 58.764 55.000 0.73 0.00 31.88 3.58
324 325 1.508632 CCCGGAATACAATGGTAGCG 58.491 55.000 0.73 0.00 31.88 4.26
325 326 1.069513 CCCGGAATACAATGGTAGCGA 59.930 52.381 0.73 0.00 31.88 4.93
326 327 2.484065 CCCGGAATACAATGGTAGCGAA 60.484 50.000 0.73 0.00 31.88 4.70
327 328 3.399330 CCGGAATACAATGGTAGCGAAT 58.601 45.455 0.00 0.00 31.88 3.34
328 329 4.561938 CCCGGAATACAATGGTAGCGAATA 60.562 45.833 0.73 0.00 31.88 1.75
329 330 4.387862 CCGGAATACAATGGTAGCGAATAC 59.612 45.833 0.00 0.00 31.88 1.89
341 342 5.830000 GTAGCGAATACCAAATTCCCTTT 57.170 39.130 0.00 0.00 0.00 3.11
342 343 4.983671 AGCGAATACCAAATTCCCTTTC 57.016 40.909 0.00 0.00 0.00 2.62
343 344 4.340617 AGCGAATACCAAATTCCCTTTCA 58.659 39.130 0.00 0.00 0.00 2.69
344 345 4.956075 AGCGAATACCAAATTCCCTTTCAT 59.044 37.500 0.00 0.00 0.00 2.57
345 346 5.067805 AGCGAATACCAAATTCCCTTTCATC 59.932 40.000 0.00 0.00 0.00 2.92
346 347 5.067805 GCGAATACCAAATTCCCTTTCATCT 59.932 40.000 0.00 0.00 0.00 2.90
347 348 6.405842 GCGAATACCAAATTCCCTTTCATCTT 60.406 38.462 0.00 0.00 0.00 2.40
348 349 6.974622 CGAATACCAAATTCCCTTTCATCTTG 59.025 38.462 0.00 0.00 0.00 3.02
349 350 7.362920 CGAATACCAAATTCCCTTTCATCTTGT 60.363 37.037 0.00 0.00 0.00 3.16
350 351 5.728637 ACCAAATTCCCTTTCATCTTGTC 57.271 39.130 0.00 0.00 0.00 3.18
351 352 5.397360 ACCAAATTCCCTTTCATCTTGTCT 58.603 37.500 0.00 0.00 0.00 3.41
352 353 5.840693 ACCAAATTCCCTTTCATCTTGTCTT 59.159 36.000 0.00 0.00 0.00 3.01
353 354 6.015095 ACCAAATTCCCTTTCATCTTGTCTTC 60.015 38.462 0.00 0.00 0.00 2.87
354 355 6.210185 CCAAATTCCCTTTCATCTTGTCTTCT 59.790 38.462 0.00 0.00 0.00 2.85
355 356 7.394359 CCAAATTCCCTTTCATCTTGTCTTCTA 59.606 37.037 0.00 0.00 0.00 2.10
356 357 8.964772 CAAATTCCCTTTCATCTTGTCTTCTAT 58.035 33.333 0.00 0.00 0.00 1.98
357 358 8.517062 AATTCCCTTTCATCTTGTCTTCTATG 57.483 34.615 0.00 0.00 0.00 2.23
358 359 6.874278 TCCCTTTCATCTTGTCTTCTATGA 57.126 37.500 0.00 0.00 0.00 2.15
359 360 7.257790 TCCCTTTCATCTTGTCTTCTATGAA 57.742 36.000 0.00 0.00 36.75 2.57
360 361 7.865820 TCCCTTTCATCTTGTCTTCTATGAAT 58.134 34.615 0.00 0.00 37.96 2.57
361 362 8.992349 TCCCTTTCATCTTGTCTTCTATGAATA 58.008 33.333 0.00 0.00 37.96 1.75
362 363 9.790344 CCCTTTCATCTTGTCTTCTATGAATAT 57.210 33.333 0.00 0.00 37.96 1.28
396 397 7.851508 ACTCGTTCAATCCATATTAATTGTCG 58.148 34.615 0.00 10.85 35.02 4.35
397 398 6.655062 TCGTTCAATCCATATTAATTGTCGC 58.345 36.000 0.00 0.00 35.02 5.19
398 399 5.851177 CGTTCAATCCATATTAATTGTCGCC 59.149 40.000 0.00 0.00 35.02 5.54
399 400 6.512578 CGTTCAATCCATATTAATTGTCGCCA 60.513 38.462 0.00 0.00 35.02 5.69
400 401 7.370383 GTTCAATCCATATTAATTGTCGCCAT 58.630 34.615 0.00 0.00 35.02 4.40
401 402 7.523293 TCAATCCATATTAATTGTCGCCATT 57.477 32.000 0.00 0.00 35.02 3.16
402 403 7.950512 TCAATCCATATTAATTGTCGCCATTT 58.049 30.769 0.00 0.00 35.02 2.32
403 404 9.072375 TCAATCCATATTAATTGTCGCCATTTA 57.928 29.630 0.00 0.00 35.02 1.40
404 405 9.345517 CAATCCATATTAATTGTCGCCATTTAG 57.654 33.333 0.00 0.00 0.00 1.85
405 406 6.908825 TCCATATTAATTGTCGCCATTTAGC 58.091 36.000 0.00 0.00 0.00 3.09
406 407 6.488344 TCCATATTAATTGTCGCCATTTAGCA 59.512 34.615 0.00 0.00 0.00 3.49
407 408 7.176515 TCCATATTAATTGTCGCCATTTAGCAT 59.823 33.333 0.00 0.00 0.00 3.79
408 409 8.458052 CCATATTAATTGTCGCCATTTAGCATA 58.542 33.333 0.00 0.00 0.00 3.14
409 410 9.838975 CATATTAATTGTCGCCATTTAGCATAA 57.161 29.630 0.00 0.00 0.00 1.90
411 412 8.801715 ATTAATTGTCGCCATTTAGCATAAAG 57.198 30.769 0.00 0.00 0.00 1.85
412 413 5.835113 ATTGTCGCCATTTAGCATAAAGT 57.165 34.783 0.00 0.00 0.00 2.66
413 414 5.637006 TTGTCGCCATTTAGCATAAAGTT 57.363 34.783 0.00 0.00 0.00 2.66
414 415 6.745159 TTGTCGCCATTTAGCATAAAGTTA 57.255 33.333 0.00 0.00 0.00 2.24
415 416 6.935741 TGTCGCCATTTAGCATAAAGTTAT 57.064 33.333 0.00 0.00 0.00 1.89
416 417 8.439993 TTGTCGCCATTTAGCATAAAGTTATA 57.560 30.769 0.00 0.00 0.00 0.98
417 418 8.615878 TGTCGCCATTTAGCATAAAGTTATAT 57.384 30.769 0.00 0.00 0.00 0.86
418 419 9.713713 TGTCGCCATTTAGCATAAAGTTATATA 57.286 29.630 0.00 0.00 0.00 0.86
490 491 9.193133 AGTTCTTACGATTCCAATTATATGACG 57.807 33.333 0.00 0.00 0.00 4.35
491 492 7.576750 TCTTACGATTCCAATTATATGACGC 57.423 36.000 0.00 0.00 0.00 5.19
492 493 7.149307 TCTTACGATTCCAATTATATGACGCA 58.851 34.615 0.00 0.00 0.00 5.24
493 494 7.817478 TCTTACGATTCCAATTATATGACGCAT 59.183 33.333 0.00 0.00 0.00 4.73
494 495 6.408858 ACGATTCCAATTATATGACGCATC 57.591 37.500 0.00 0.00 0.00 3.91
495 496 5.351465 ACGATTCCAATTATATGACGCATCC 59.649 40.000 0.00 0.00 0.00 3.51
496 497 5.582269 CGATTCCAATTATATGACGCATCCT 59.418 40.000 0.00 0.00 0.00 3.24
497 498 6.237942 CGATTCCAATTATATGACGCATCCTC 60.238 42.308 0.00 0.00 0.00 3.71
498 499 5.482163 TCCAATTATATGACGCATCCTCA 57.518 39.130 0.00 0.00 0.00 3.86
499 500 5.863965 TCCAATTATATGACGCATCCTCAA 58.136 37.500 0.00 0.00 0.00 3.02
500 501 6.475504 TCCAATTATATGACGCATCCTCAAT 58.524 36.000 0.00 0.00 0.00 2.57
501 502 7.619965 TCCAATTATATGACGCATCCTCAATA 58.380 34.615 0.00 0.00 0.00 1.90
502 503 7.549134 TCCAATTATATGACGCATCCTCAATAC 59.451 37.037 0.00 0.00 0.00 1.89
503 504 7.334171 CCAATTATATGACGCATCCTCAATACA 59.666 37.037 0.00 0.00 0.00 2.29
504 505 8.720562 CAATTATATGACGCATCCTCAATACAA 58.279 33.333 0.00 0.00 0.00 2.41
505 506 9.453572 AATTATATGACGCATCCTCAATACAAT 57.546 29.630 0.00 0.00 0.00 2.71
506 507 6.732531 ATATGACGCATCCTCAATACAATG 57.267 37.500 0.00 0.00 0.00 2.82
507 508 3.872696 TGACGCATCCTCAATACAATGT 58.127 40.909 0.00 0.00 0.00 2.71
508 509 3.871006 TGACGCATCCTCAATACAATGTC 59.129 43.478 0.00 0.00 0.00 3.06
509 510 4.122776 GACGCATCCTCAATACAATGTCT 58.877 43.478 0.00 0.00 0.00 3.41
510 511 5.163457 TGACGCATCCTCAATACAATGTCTA 60.163 40.000 0.00 0.00 0.00 2.59
511 512 5.858381 ACGCATCCTCAATACAATGTCTAT 58.142 37.500 0.00 0.00 0.00 1.98
512 513 6.291377 ACGCATCCTCAATACAATGTCTATT 58.709 36.000 0.00 0.00 0.00 1.73
513 514 6.767902 ACGCATCCTCAATACAATGTCTATTT 59.232 34.615 0.00 0.00 0.00 1.40
514 515 7.283127 ACGCATCCTCAATACAATGTCTATTTT 59.717 33.333 0.00 0.00 0.00 1.82
515 516 8.773645 CGCATCCTCAATACAATGTCTATTTTA 58.226 33.333 0.00 0.00 0.00 1.52
543 544 9.228949 AGTACGACTATATTGTATAGAGGTTGG 57.771 37.037 10.17 0.00 29.47 3.77
544 545 7.463961 ACGACTATATTGTATAGAGGTTGGG 57.536 40.000 10.17 0.00 0.00 4.12
545 546 7.008941 ACGACTATATTGTATAGAGGTTGGGT 58.991 38.462 10.17 0.00 0.00 4.51
546 547 7.176340 ACGACTATATTGTATAGAGGTTGGGTC 59.824 40.741 10.17 0.00 0.00 4.46
547 548 7.463961 ACTATATTGTATAGAGGTTGGGTCG 57.536 40.000 10.17 0.00 0.00 4.79
548 549 7.236529 ACTATATTGTATAGAGGTTGGGTCGA 58.763 38.462 10.17 0.00 0.00 4.20
549 550 4.939052 ATTGTATAGAGGTTGGGTCGAG 57.061 45.455 0.00 0.00 0.00 4.04
550 551 3.377253 TGTATAGAGGTTGGGTCGAGT 57.623 47.619 0.00 0.00 0.00 4.18
551 552 3.705051 TGTATAGAGGTTGGGTCGAGTT 58.295 45.455 0.00 0.00 0.00 3.01
552 553 4.858850 TGTATAGAGGTTGGGTCGAGTTA 58.141 43.478 0.00 0.00 0.00 2.24
553 554 5.452255 TGTATAGAGGTTGGGTCGAGTTAT 58.548 41.667 0.00 0.00 0.00 1.89
554 555 6.604171 TGTATAGAGGTTGGGTCGAGTTATA 58.396 40.000 0.00 0.00 0.00 0.98
555 556 7.236529 TGTATAGAGGTTGGGTCGAGTTATAT 58.763 38.462 0.00 0.00 0.00 0.86
556 557 7.727186 TGTATAGAGGTTGGGTCGAGTTATATT 59.273 37.037 0.00 0.00 0.00 1.28
557 558 5.532664 AGAGGTTGGGTCGAGTTATATTC 57.467 43.478 0.00 0.00 0.00 1.75
558 559 4.037684 AGAGGTTGGGTCGAGTTATATTCG 59.962 45.833 0.00 1.81 39.33 3.34
559 560 3.956199 AGGTTGGGTCGAGTTATATTCGA 59.044 43.478 5.93 5.93 44.05 3.71
568 569 6.057627 TCGAGTTATATTCGACTTGGAGAC 57.942 41.667 5.93 0.00 41.68 3.36
569 570 5.587443 TCGAGTTATATTCGACTTGGAGACA 59.413 40.000 5.93 0.00 41.68 3.41
570 571 5.910166 CGAGTTATATTCGACTTGGAGACAG 59.090 44.000 1.99 0.00 40.29 3.51
571 572 6.458478 CGAGTTATATTCGACTTGGAGACAGT 60.458 42.308 1.99 0.00 40.29 3.55
572 573 7.254692 CGAGTTATATTCGACTTGGAGACAGTA 60.255 40.741 1.99 0.00 40.29 2.74
573 574 8.289939 AGTTATATTCGACTTGGAGACAGTAA 57.710 34.615 0.00 0.00 44.54 2.24
574 575 8.915036 AGTTATATTCGACTTGGAGACAGTAAT 58.085 33.333 0.00 0.00 44.54 1.89
582 583 9.570468 TCGACTTGGAGACAGTAATATAATACT 57.430 33.333 0.00 0.00 44.54 2.12
583 584 9.828852 CGACTTGGAGACAGTAATATAATACTC 57.171 37.037 0.00 0.00 44.54 2.59
585 586 9.884814 ACTTGGAGACAGTAATATAATACTCCT 57.115 33.333 0.00 0.00 44.54 3.69
599 600 9.760926 ATATAATACTCCTATGAAGAGACAGCA 57.239 33.333 0.00 0.00 35.27 4.41
600 601 6.992664 AATACTCCTATGAAGAGACAGCAT 57.007 37.500 0.00 0.00 35.27 3.79
601 602 6.992664 ATACTCCTATGAAGAGACAGCATT 57.007 37.500 0.00 0.00 35.27 3.56
602 603 5.021033 ACTCCTATGAAGAGACAGCATTG 57.979 43.478 0.00 0.00 35.27 2.82
603 604 3.801698 TCCTATGAAGAGACAGCATTGC 58.198 45.455 0.00 0.00 0.00 3.56
604 605 2.877168 CCTATGAAGAGACAGCATTGCC 59.123 50.000 4.70 0.00 0.00 4.52
605 606 2.803030 ATGAAGAGACAGCATTGCCT 57.197 45.000 4.70 0.00 0.00 4.75
606 607 2.574006 TGAAGAGACAGCATTGCCTT 57.426 45.000 4.70 0.74 0.00 4.35
607 608 2.156917 TGAAGAGACAGCATTGCCTTG 58.843 47.619 4.70 0.31 0.00 3.61
608 609 2.157738 GAAGAGACAGCATTGCCTTGT 58.842 47.619 4.70 3.98 0.00 3.16
609 610 3.244526 TGAAGAGACAGCATTGCCTTGTA 60.245 43.478 4.70 0.00 0.00 2.41
610 611 3.423539 AGAGACAGCATTGCCTTGTAA 57.576 42.857 4.70 0.00 0.00 2.41
611 612 3.341823 AGAGACAGCATTGCCTTGTAAG 58.658 45.455 4.70 0.00 0.00 2.34
612 613 3.077359 GAGACAGCATTGCCTTGTAAGT 58.923 45.455 4.70 0.00 0.00 2.24
613 614 3.077359 AGACAGCATTGCCTTGTAAGTC 58.923 45.455 4.70 3.08 0.00 3.01
614 615 1.806542 ACAGCATTGCCTTGTAAGTCG 59.193 47.619 4.70 0.00 0.00 4.18
615 616 1.806542 CAGCATTGCCTTGTAAGTCGT 59.193 47.619 4.70 0.00 0.00 4.34
616 617 3.000041 CAGCATTGCCTTGTAAGTCGTA 59.000 45.455 4.70 0.00 0.00 3.43
617 618 3.000727 AGCATTGCCTTGTAAGTCGTAC 58.999 45.455 4.70 0.00 0.00 3.67
618 619 2.095372 GCATTGCCTTGTAAGTCGTACC 59.905 50.000 0.00 0.00 30.94 3.34
619 620 3.331150 CATTGCCTTGTAAGTCGTACCA 58.669 45.455 0.00 0.00 30.94 3.25
620 621 2.736144 TGCCTTGTAAGTCGTACCAG 57.264 50.000 0.00 0.00 30.94 4.00
621 622 1.337447 TGCCTTGTAAGTCGTACCAGC 60.337 52.381 0.00 0.00 30.94 4.85
622 623 1.625616 CCTTGTAAGTCGTACCAGCG 58.374 55.000 0.00 0.00 30.94 5.18
623 624 1.068055 CCTTGTAAGTCGTACCAGCGT 60.068 52.381 0.00 0.00 30.94 5.07
624 625 2.162208 CCTTGTAAGTCGTACCAGCGTA 59.838 50.000 0.00 0.00 30.94 4.42
625 626 3.423571 CTTGTAAGTCGTACCAGCGTAG 58.576 50.000 0.00 0.00 30.94 3.51
626 627 1.131126 TGTAAGTCGTACCAGCGTAGC 59.869 52.381 0.00 0.00 43.24 3.58
642 643 3.307379 AGCTTCAACGAAGGTGTCC 57.693 52.632 7.58 0.00 46.56 4.02
643 644 0.468226 AGCTTCAACGAAGGTGTCCA 59.532 50.000 7.58 0.00 46.56 4.02
644 645 0.586802 GCTTCAACGAAGGTGTCCAC 59.413 55.000 5.92 0.00 39.76 4.02
645 646 0.859232 CTTCAACGAAGGTGTCCACG 59.141 55.000 0.00 0.00 36.16 4.94
646 647 0.460722 TTCAACGAAGGTGTCCACGA 59.539 50.000 10.77 0.00 32.30 4.35
647 648 0.031585 TCAACGAAGGTGTCCACGAG 59.968 55.000 10.77 0.00 32.30 4.18
648 649 0.249322 CAACGAAGGTGTCCACGAGT 60.249 55.000 10.77 0.00 32.30 4.18
715 716 3.587840 TGGACTCCCCAACCAAGG 58.412 61.111 0.00 0.00 43.29 3.61
717 718 0.699577 TGGACTCCCCAACCAAGGAA 60.700 55.000 0.00 0.00 43.29 3.36
718 719 0.704664 GGACTCCCCAACCAAGGAAT 59.295 55.000 0.00 0.00 34.14 3.01
719 720 1.616994 GGACTCCCCAACCAAGGAATG 60.617 57.143 0.00 0.00 34.14 2.67
755 756 5.172053 CGTTTCTGTTCACAATCAAGAAAGC 59.828 40.000 0.00 0.00 0.00 3.51
760 761 6.039605 TCTGTTCACAATCAAGAAAGCAATCA 59.960 34.615 0.00 0.00 0.00 2.57
762 763 6.864685 TGTTCACAATCAAGAAAGCAATCATC 59.135 34.615 0.00 0.00 0.00 2.92
812 813 3.546617 CGATTAGGACTTGTCTCGATCG 58.453 50.000 9.36 9.36 0.00 3.69
814 815 4.529446 GATTAGGACTTGTCTCGATCGAC 58.471 47.826 15.15 6.88 34.52 4.20
828 829 2.806745 CGATCGACCTACCATGCCAAAT 60.807 50.000 10.26 0.00 0.00 2.32
835 836 1.942657 CTACCATGCCAAATCGGAGTG 59.057 52.381 0.00 0.00 36.56 3.51
893 900 0.247460 CTGACGAACAGCTCCATCCA 59.753 55.000 0.00 0.00 39.86 3.41
895 902 2.101415 CTGACGAACAGCTCCATCCATA 59.899 50.000 0.00 0.00 39.86 2.74
911 918 5.009310 CCATCCATACATGCATGCCATATAC 59.991 44.000 26.53 0.00 31.47 1.47
912 919 5.440207 TCCATACATGCATGCCATATACT 57.560 39.130 26.53 7.00 31.47 2.12
959 966 3.609703 AGCGAGCTTCGATCAGGT 58.390 55.556 9.32 0.00 43.74 4.00
970 977 0.250234 CGATCAGGTCATGTGGGTGT 59.750 55.000 0.00 0.00 0.00 4.16
1081 1088 1.153061 ATGCTCATGGCCATCCTGG 59.847 57.895 17.61 4.60 41.55 4.45
1101 1108 2.126189 GCCACGGTGACCTACGTC 60.126 66.667 10.28 0.00 42.04 4.34
1209 1216 0.529992 GCCGCTACAACGCCTTCTAT 60.530 55.000 0.00 0.00 0.00 1.98
1226 1233 1.363145 TATTACAGCAACGCCACCGC 61.363 55.000 0.00 0.00 38.22 5.68
1233 1240 2.282180 AACGCCACCGCCTTCATT 60.282 55.556 0.00 0.00 38.22 2.57
1323 1330 4.131088 GTCGTCCGGCTCCTCACC 62.131 72.222 0.00 0.00 0.00 4.02
1347 1354 1.377725 CAGGGTGGTCATGGTGCTC 60.378 63.158 0.00 0.00 0.00 4.26
1368 2249 0.896940 ACTTCTTCGCGGTCCTGGTA 60.897 55.000 6.13 0.00 0.00 3.25
1485 2840 4.749310 CGTGCGCTCTTCAGGCCT 62.749 66.667 9.73 0.00 0.00 5.19
1488 2843 2.107953 GCGCTCTTCAGGCCTAGG 59.892 66.667 3.98 3.67 0.00 3.02
1532 2887 4.776322 CCACGGCCCATCGCTCAA 62.776 66.667 0.00 0.00 37.74 3.02
1674 3029 2.448582 CCCAGGCAGCCCGGTTATA 61.449 63.158 13.12 0.00 35.76 0.98
1743 3098 4.870991 GGTTAGCTAGCAGGTTCAGTTTAG 59.129 45.833 18.83 0.00 0.00 1.85
1774 3159 8.865001 CAGTTAGTTCAGTTAGCAGATAAGTTC 58.135 37.037 0.00 0.00 0.00 3.01
1781 3166 8.123639 TCAGTTAGCAGATAAGTTCAGTTAGT 57.876 34.615 0.00 0.00 0.00 2.24
1965 3356 2.954318 AGAAGAAAGCAGAAAAGCAGCA 59.046 40.909 0.00 0.00 36.85 4.41
2002 3403 4.671766 GCAAAACTCTCTCGTGTGTGTTTT 60.672 41.667 18.78 18.78 40.63 2.43
2053 3454 2.819595 CATGTCAAGGACGCCGGG 60.820 66.667 2.18 0.00 34.95 5.73
2175 3576 2.045143 TGCCAATGCAGCCGATGA 60.045 55.556 0.00 0.00 44.23 2.92
2216 3617 4.819761 GCGCTCCCGATGCTGACA 62.820 66.667 0.00 0.00 36.29 3.58
2255 3656 0.747283 GGGCTCTGCTCATGAAGGTG 60.747 60.000 0.00 0.00 0.00 4.00
2612 4013 0.179124 TGGCCAAGTTTTTGCGTGTC 60.179 50.000 0.61 0.00 32.79 3.67
2681 4082 0.684479 ACATCAGCACGCTCTCCCTA 60.684 55.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.588824 ATGCGTGTGTGCTGATTGGG 61.589 55.000 0.00 0.00 35.36 4.12
1 2 0.179181 GATGCGTGTGTGCTGATTGG 60.179 55.000 0.00 0.00 35.36 3.16
3 4 1.527034 AAGATGCGTGTGTGCTGATT 58.473 45.000 0.00 0.00 35.36 2.57
4 5 2.385013 TAAGATGCGTGTGTGCTGAT 57.615 45.000 0.00 0.00 35.36 2.90
5 6 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
6 7 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
7 8 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
8 9 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
9 10 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
10 11 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
11 12 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
12 13 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
13 14 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
14 15 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
15 16 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
16 17 6.373495 TCATTGGATGTGATGCTATAAGATGC 59.627 38.462 0.00 0.00 0.00 3.91
17 18 7.606839 AGTCATTGGATGTGATGCTATAAGATG 59.393 37.037 0.00 0.00 0.00 2.90
18 19 7.687388 AGTCATTGGATGTGATGCTATAAGAT 58.313 34.615 0.00 0.00 0.00 2.40
19 20 7.071069 AGTCATTGGATGTGATGCTATAAGA 57.929 36.000 0.00 0.00 0.00 2.10
23 24 9.797642 TTTTATAGTCATTGGATGTGATGCTAT 57.202 29.630 0.00 0.00 32.56 2.97
24 25 9.276590 CTTTTATAGTCATTGGATGTGATGCTA 57.723 33.333 0.00 0.00 0.00 3.49
25 26 7.994911 TCTTTTATAGTCATTGGATGTGATGCT 59.005 33.333 0.00 0.00 0.00 3.79
26 27 8.158169 TCTTTTATAGTCATTGGATGTGATGC 57.842 34.615 0.00 0.00 0.00 3.91
29 30 9.904198 TTCATCTTTTATAGTCATTGGATGTGA 57.096 29.630 0.00 0.00 33.39 3.58
73 74 9.645059 CAGTTTTGTTAGAACTCATCTAGATGA 57.355 33.333 29.17 29.17 44.83 2.92
74 75 9.645059 TCAGTTTTGTTAGAACTCATCTAGATG 57.355 33.333 24.32 24.32 41.59 2.90
78 79 9.832445 AGTTTCAGTTTTGTTAGAACTCATCTA 57.168 29.630 0.00 0.00 39.71 1.98
79 80 8.738645 AGTTTCAGTTTTGTTAGAACTCATCT 57.261 30.769 0.00 0.00 42.48 2.90
80 81 8.070769 GGAGTTTCAGTTTTGTTAGAACTCATC 58.929 37.037 13.32 0.00 35.26 2.92
81 82 7.775561 AGGAGTTTCAGTTTTGTTAGAACTCAT 59.224 33.333 13.32 5.44 35.26 2.90
82 83 7.110155 AGGAGTTTCAGTTTTGTTAGAACTCA 58.890 34.615 13.32 0.00 35.26 3.41
83 84 7.555306 AGGAGTTTCAGTTTTGTTAGAACTC 57.445 36.000 0.00 0.00 35.26 3.01
84 85 7.067129 GGAAGGAGTTTCAGTTTTGTTAGAACT 59.933 37.037 0.00 0.00 37.54 3.01
85 86 7.148137 TGGAAGGAGTTTCAGTTTTGTTAGAAC 60.148 37.037 0.00 0.00 37.54 3.01
86 87 6.887545 TGGAAGGAGTTTCAGTTTTGTTAGAA 59.112 34.615 0.00 0.00 37.54 2.10
87 88 6.419791 TGGAAGGAGTTTCAGTTTTGTTAGA 58.580 36.000 0.00 0.00 37.54 2.10
88 89 6.693315 TGGAAGGAGTTTCAGTTTTGTTAG 57.307 37.500 0.00 0.00 37.54 2.34
89 90 6.264518 GGATGGAAGGAGTTTCAGTTTTGTTA 59.735 38.462 0.00 0.00 37.54 2.41
90 91 5.069119 GGATGGAAGGAGTTTCAGTTTTGTT 59.931 40.000 0.00 0.00 37.54 2.83
91 92 4.584743 GGATGGAAGGAGTTTCAGTTTTGT 59.415 41.667 0.00 0.00 37.54 2.83
92 93 4.584325 TGGATGGAAGGAGTTTCAGTTTTG 59.416 41.667 0.00 0.00 37.54 2.44
93 94 4.803452 TGGATGGAAGGAGTTTCAGTTTT 58.197 39.130 0.00 0.00 37.54 2.43
94 95 4.453480 TGGATGGAAGGAGTTTCAGTTT 57.547 40.909 0.00 0.00 37.54 2.66
95 96 4.664688 ATGGATGGAAGGAGTTTCAGTT 57.335 40.909 0.00 0.00 37.54 3.16
96 97 5.983333 ATATGGATGGAAGGAGTTTCAGT 57.017 39.130 0.00 0.00 37.54 3.41
97 98 8.930846 ATTAATATGGATGGAAGGAGTTTCAG 57.069 34.615 0.00 0.00 37.54 3.02
98 99 9.135189 CAATTAATATGGATGGAAGGAGTTTCA 57.865 33.333 0.00 0.00 37.54 2.69
99 100 9.136323 ACAATTAATATGGATGGAAGGAGTTTC 57.864 33.333 0.00 0.00 34.93 2.78
100 101 9.492730 AACAATTAATATGGATGGAAGGAGTTT 57.507 29.630 0.00 0.00 0.00 2.66
101 102 8.917088 CAACAATTAATATGGATGGAAGGAGTT 58.083 33.333 0.00 0.00 0.00 3.01
102 103 8.281531 TCAACAATTAATATGGATGGAAGGAGT 58.718 33.333 0.00 0.00 0.00 3.85
103 104 8.696043 TCAACAATTAATATGGATGGAAGGAG 57.304 34.615 0.00 0.00 0.00 3.69
104 105 9.081204 CATCAACAATTAATATGGATGGAAGGA 57.919 33.333 8.33 0.00 0.00 3.36
105 106 9.081204 TCATCAACAATTAATATGGATGGAAGG 57.919 33.333 13.42 0.00 33.35 3.46
185 186 9.917129 TTCGAATCGCAAGGACTAATTATATTA 57.083 29.630 0.00 0.00 38.47 0.98
186 187 8.827177 TTCGAATCGCAAGGACTAATTATATT 57.173 30.769 0.00 0.00 38.47 1.28
191 192 8.873830 CATATATTCGAATCGCAAGGACTAATT 58.126 33.333 15.25 0.00 38.47 1.40
192 193 8.251026 TCATATATTCGAATCGCAAGGACTAAT 58.749 33.333 15.25 0.41 38.47 1.73
193 194 7.599171 TCATATATTCGAATCGCAAGGACTAA 58.401 34.615 15.25 0.00 38.47 2.24
194 195 7.153217 TCATATATTCGAATCGCAAGGACTA 57.847 36.000 15.25 0.00 38.47 2.59
195 196 6.025749 TCATATATTCGAATCGCAAGGACT 57.974 37.500 15.25 0.00 38.47 3.85
196 197 6.893958 ATCATATATTCGAATCGCAAGGAC 57.106 37.500 15.25 0.00 38.47 3.85
197 198 9.599866 AATAATCATATATTCGAATCGCAAGGA 57.400 29.630 15.25 6.37 38.47 3.36
200 201 9.986833 CCAAATAATCATATATTCGAATCGCAA 57.013 29.630 15.25 0.00 0.00 4.85
201 202 8.122330 GCCAAATAATCATATATTCGAATCGCA 58.878 33.333 15.25 0.00 0.00 5.10
202 203 8.338259 AGCCAAATAATCATATATTCGAATCGC 58.662 33.333 15.25 0.00 0.00 4.58
208 209 9.702726 CGGTTTAGCCAAATAATCATATATTCG 57.297 33.333 0.00 0.00 36.97 3.34
215 216 9.361315 GTTTTTACGGTTTAGCCAAATAATCAT 57.639 29.630 0.00 0.00 36.97 2.45
216 217 8.578151 AGTTTTTACGGTTTAGCCAAATAATCA 58.422 29.630 0.00 0.00 36.97 2.57
217 218 8.856247 CAGTTTTTACGGTTTAGCCAAATAATC 58.144 33.333 0.00 0.00 36.97 1.75
218 219 7.329962 GCAGTTTTTACGGTTTAGCCAAATAAT 59.670 33.333 0.00 0.00 36.97 1.28
219 220 6.641723 GCAGTTTTTACGGTTTAGCCAAATAA 59.358 34.615 0.00 0.00 36.97 1.40
220 221 6.016108 AGCAGTTTTTACGGTTTAGCCAAATA 60.016 34.615 0.00 0.00 36.97 1.40
221 222 4.986034 GCAGTTTTTACGGTTTAGCCAAAT 59.014 37.500 0.00 0.00 36.97 2.32
222 223 4.098196 AGCAGTTTTTACGGTTTAGCCAAA 59.902 37.500 0.00 0.00 36.97 3.28
223 224 3.633065 AGCAGTTTTTACGGTTTAGCCAA 59.367 39.130 0.00 0.00 36.97 4.52
224 225 3.215975 AGCAGTTTTTACGGTTTAGCCA 58.784 40.909 0.00 0.00 36.97 4.75
225 226 3.251487 TGAGCAGTTTTTACGGTTTAGCC 59.749 43.478 0.00 0.00 0.00 3.93
226 227 4.216731 GTGAGCAGTTTTTACGGTTTAGC 58.783 43.478 0.00 0.00 0.00 3.09
227 228 4.451557 CGTGAGCAGTTTTTACGGTTTAG 58.548 43.478 0.00 0.00 0.00 1.85
228 229 4.455917 CGTGAGCAGTTTTTACGGTTTA 57.544 40.909 0.00 0.00 0.00 2.01
229 230 3.328237 CGTGAGCAGTTTTTACGGTTT 57.672 42.857 0.00 0.00 0.00 3.27
244 245 0.108186 TAGCAACATCCCTGCGTGAG 60.108 55.000 0.00 0.00 44.75 3.51
245 246 0.391130 GTAGCAACATCCCTGCGTGA 60.391 55.000 0.00 0.00 44.75 4.35
246 247 0.673333 TGTAGCAACATCCCTGCGTG 60.673 55.000 0.00 0.00 44.75 5.34
247 248 0.253044 ATGTAGCAACATCCCTGCGT 59.747 50.000 0.00 0.00 42.92 5.24
248 249 3.085208 ATGTAGCAACATCCCTGCG 57.915 52.632 0.00 0.00 42.92 5.18
259 260 3.534554 CCACTATGTTGCAGATGTAGCA 58.465 45.455 0.00 0.00 40.85 3.49
260 261 2.874701 CCCACTATGTTGCAGATGTAGC 59.125 50.000 0.00 0.00 0.00 3.58
261 262 4.375272 CTCCCACTATGTTGCAGATGTAG 58.625 47.826 0.00 0.00 0.00 2.74
262 263 3.432186 GCTCCCACTATGTTGCAGATGTA 60.432 47.826 0.00 0.00 0.00 2.29
263 264 2.681976 GCTCCCACTATGTTGCAGATGT 60.682 50.000 0.00 0.00 0.00 3.06
264 265 1.945394 GCTCCCACTATGTTGCAGATG 59.055 52.381 0.00 0.00 0.00 2.90
265 266 1.133976 GGCTCCCACTATGTTGCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
266 267 0.253044 GGCTCCCACTATGTTGCAGA 59.747 55.000 0.00 0.00 0.00 4.26
267 268 0.254178 AGGCTCCCACTATGTTGCAG 59.746 55.000 0.00 0.00 0.00 4.41
268 269 0.035152 CAGGCTCCCACTATGTTGCA 60.035 55.000 0.00 0.00 0.00 4.08
269 270 0.035056 ACAGGCTCCCACTATGTTGC 60.035 55.000 0.00 0.00 0.00 4.17
270 271 1.740380 CGACAGGCTCCCACTATGTTG 60.740 57.143 0.00 0.00 0.00 3.33
271 272 0.537188 CGACAGGCTCCCACTATGTT 59.463 55.000 0.00 0.00 0.00 2.71
272 273 1.961180 GCGACAGGCTCCCACTATGT 61.961 60.000 0.00 0.00 39.11 2.29
273 274 1.227380 GCGACAGGCTCCCACTATG 60.227 63.158 0.00 0.00 39.11 2.23
274 275 1.050988 ATGCGACAGGCTCCCACTAT 61.051 55.000 0.00 0.00 44.05 2.12
275 276 1.685765 ATGCGACAGGCTCCCACTA 60.686 57.895 0.00 0.00 44.05 2.74
276 277 3.005539 ATGCGACAGGCTCCCACT 61.006 61.111 0.00 0.00 44.05 4.00
277 278 2.821366 CATGCGACAGGCTCCCAC 60.821 66.667 0.00 0.00 44.05 4.61
278 279 4.100084 CCATGCGACAGGCTCCCA 62.100 66.667 0.00 0.00 44.05 4.37
279 280 4.101448 ACCATGCGACAGGCTCCC 62.101 66.667 0.00 0.00 44.05 4.30
280 281 2.821366 CACCATGCGACAGGCTCC 60.821 66.667 0.00 0.00 44.05 4.70
281 282 2.046892 ACACCATGCGACAGGCTC 60.047 61.111 0.00 0.00 44.05 4.70
282 283 2.359107 CACACCATGCGACAGGCT 60.359 61.111 0.00 0.00 44.05 4.58
283 284 4.107051 GCACACCATGCGACAGGC 62.107 66.667 0.00 0.00 46.55 4.85
295 296 3.338275 TATTCCGGGCCAGGCACAC 62.338 63.158 18.43 1.85 0.00 3.82
296 297 3.012119 TATTCCGGGCCAGGCACA 61.012 61.111 18.43 3.76 0.00 4.57
297 298 2.516225 GTATTCCGGGCCAGGCAC 60.516 66.667 18.43 9.32 0.00 5.01
298 299 1.932156 ATTGTATTCCGGGCCAGGCA 61.932 55.000 18.43 6.95 0.00 4.75
299 300 1.152756 ATTGTATTCCGGGCCAGGC 60.153 57.895 18.43 1.26 0.00 4.85
300 301 0.823356 CCATTGTATTCCGGGCCAGG 60.823 60.000 17.03 17.03 0.00 4.45
301 302 0.106719 ACCATTGTATTCCGGGCCAG 60.107 55.000 4.39 0.00 0.00 4.85
302 303 1.142060 CTACCATTGTATTCCGGGCCA 59.858 52.381 4.39 0.00 0.00 5.36
303 304 1.892209 CTACCATTGTATTCCGGGCC 58.108 55.000 0.00 0.00 0.00 5.80
304 305 1.235724 GCTACCATTGTATTCCGGGC 58.764 55.000 0.00 0.00 0.00 6.13
305 306 1.069513 TCGCTACCATTGTATTCCGGG 59.930 52.381 0.00 0.00 0.00 5.73
306 307 2.519377 TCGCTACCATTGTATTCCGG 57.481 50.000 0.00 0.00 0.00 5.14
307 308 5.511088 GTATTCGCTACCATTGTATTCCG 57.489 43.478 0.00 0.00 0.00 4.30
318 319 4.204799 AAGGGAATTTGGTATTCGCTACC 58.795 43.478 14.76 6.98 46.23 3.18
319 320 5.355910 TGAAAGGGAATTTGGTATTCGCTAC 59.644 40.000 14.76 12.67 46.23 3.58
320 321 5.502079 TGAAAGGGAATTTGGTATTCGCTA 58.498 37.500 14.76 1.10 46.23 4.26
322 323 4.712122 TGAAAGGGAATTTGGTATTCGC 57.288 40.909 6.48 6.48 40.09 4.70
323 324 6.699575 AGATGAAAGGGAATTTGGTATTCG 57.300 37.500 0.00 0.00 0.00 3.34
324 325 7.840931 ACAAGATGAAAGGGAATTTGGTATTC 58.159 34.615 0.00 0.00 0.00 1.75
325 326 7.675619 AGACAAGATGAAAGGGAATTTGGTATT 59.324 33.333 0.00 0.00 0.00 1.89
326 327 7.184862 AGACAAGATGAAAGGGAATTTGGTAT 58.815 34.615 0.00 0.00 0.00 2.73
327 328 6.552008 AGACAAGATGAAAGGGAATTTGGTA 58.448 36.000 0.00 0.00 0.00 3.25
328 329 5.397360 AGACAAGATGAAAGGGAATTTGGT 58.603 37.500 0.00 0.00 0.00 3.67
329 330 5.990120 AGACAAGATGAAAGGGAATTTGG 57.010 39.130 0.00 0.00 0.00 3.28
330 331 7.224522 AGAAGACAAGATGAAAGGGAATTTG 57.775 36.000 0.00 0.00 0.00 2.32
331 332 8.964772 CATAGAAGACAAGATGAAAGGGAATTT 58.035 33.333 0.00 0.00 0.00 1.82
332 333 8.331740 TCATAGAAGACAAGATGAAAGGGAATT 58.668 33.333 0.00 0.00 0.00 2.17
333 334 7.865820 TCATAGAAGACAAGATGAAAGGGAAT 58.134 34.615 0.00 0.00 0.00 3.01
334 335 7.257790 TCATAGAAGACAAGATGAAAGGGAA 57.742 36.000 0.00 0.00 0.00 3.97
335 336 6.874278 TCATAGAAGACAAGATGAAAGGGA 57.126 37.500 0.00 0.00 0.00 4.20
336 337 9.790344 ATATTCATAGAAGACAAGATGAAAGGG 57.210 33.333 0.71 0.00 40.61 3.95
370 371 8.335356 CGACAATTAATATGGATTGAACGAGTT 58.665 33.333 14.77 0.00 37.98 3.01
371 372 7.518370 GCGACAATTAATATGGATTGAACGAGT 60.518 37.037 22.24 5.48 37.98 4.18
372 373 6.792250 GCGACAATTAATATGGATTGAACGAG 59.208 38.462 22.24 11.26 37.98 4.18
373 374 6.293190 GGCGACAATTAATATGGATTGAACGA 60.293 38.462 22.24 0.00 37.98 3.85
374 375 5.851177 GGCGACAATTAATATGGATTGAACG 59.149 40.000 14.77 16.93 38.33 3.95
375 376 6.734137 TGGCGACAATTAATATGGATTGAAC 58.266 36.000 14.77 9.14 36.87 3.18
376 377 6.951062 TGGCGACAATTAATATGGATTGAA 57.049 33.333 14.77 0.00 36.87 2.69
468 469 7.346208 TGCGTCATATAATTGGAATCGTAAG 57.654 36.000 0.00 0.00 0.00 2.34
469 470 7.064134 GGATGCGTCATATAATTGGAATCGTAA 59.936 37.037 8.47 0.00 0.00 3.18
470 471 6.533723 GGATGCGTCATATAATTGGAATCGTA 59.466 38.462 8.47 0.00 0.00 3.43
471 472 5.351465 GGATGCGTCATATAATTGGAATCGT 59.649 40.000 8.47 0.00 0.00 3.73
472 473 5.582269 AGGATGCGTCATATAATTGGAATCG 59.418 40.000 8.47 0.00 0.00 3.34
473 474 6.595326 TGAGGATGCGTCATATAATTGGAATC 59.405 38.462 8.47 0.00 0.00 2.52
474 475 6.475504 TGAGGATGCGTCATATAATTGGAAT 58.524 36.000 8.47 0.00 0.00 3.01
475 476 5.863965 TGAGGATGCGTCATATAATTGGAA 58.136 37.500 8.47 0.00 0.00 3.53
476 477 5.482163 TGAGGATGCGTCATATAATTGGA 57.518 39.130 8.47 0.00 0.00 3.53
477 478 6.748333 ATTGAGGATGCGTCATATAATTGG 57.252 37.500 8.47 0.00 0.00 3.16
478 479 8.255394 TGTATTGAGGATGCGTCATATAATTG 57.745 34.615 8.47 0.00 0.00 2.32
479 480 8.846943 TTGTATTGAGGATGCGTCATATAATT 57.153 30.769 8.47 0.00 0.00 1.40
480 481 8.886719 CATTGTATTGAGGATGCGTCATATAAT 58.113 33.333 8.47 7.84 0.00 1.28
481 482 7.877612 ACATTGTATTGAGGATGCGTCATATAA 59.122 33.333 8.47 2.42 0.00 0.98
482 483 7.386059 ACATTGTATTGAGGATGCGTCATATA 58.614 34.615 8.47 0.00 0.00 0.86
483 484 6.233434 ACATTGTATTGAGGATGCGTCATAT 58.767 36.000 8.47 0.00 0.00 1.78
484 485 5.610398 ACATTGTATTGAGGATGCGTCATA 58.390 37.500 8.47 0.00 0.00 2.15
485 486 4.454678 ACATTGTATTGAGGATGCGTCAT 58.545 39.130 8.47 0.00 0.00 3.06
486 487 3.871006 GACATTGTATTGAGGATGCGTCA 59.129 43.478 8.47 0.00 0.00 4.35
487 488 4.122776 AGACATTGTATTGAGGATGCGTC 58.877 43.478 0.00 0.00 0.00 5.19
488 489 4.142609 AGACATTGTATTGAGGATGCGT 57.857 40.909 0.00 0.00 0.00 5.24
489 490 6.791887 AATAGACATTGTATTGAGGATGCG 57.208 37.500 0.00 0.00 0.00 4.73
517 518 9.228949 CCAACCTCTATACAATATAGTCGTACT 57.771 37.037 3.43 0.00 0.00 2.73
518 519 8.457261 CCCAACCTCTATACAATATAGTCGTAC 58.543 40.741 3.43 0.00 0.00 3.67
519 520 8.166061 ACCCAACCTCTATACAATATAGTCGTA 58.834 37.037 3.43 0.00 0.00 3.43
520 521 7.008941 ACCCAACCTCTATACAATATAGTCGT 58.991 38.462 3.43 0.00 0.00 4.34
521 522 7.463961 ACCCAACCTCTATACAATATAGTCG 57.536 40.000 3.43 0.00 0.00 4.18
522 523 7.392673 TCGACCCAACCTCTATACAATATAGTC 59.607 40.741 3.43 0.00 0.00 2.59
523 524 7.236529 TCGACCCAACCTCTATACAATATAGT 58.763 38.462 3.43 0.00 0.00 2.12
524 525 7.393796 ACTCGACCCAACCTCTATACAATATAG 59.606 40.741 0.00 0.00 0.00 1.31
525 526 7.236529 ACTCGACCCAACCTCTATACAATATA 58.763 38.462 0.00 0.00 0.00 0.86
526 527 6.075984 ACTCGACCCAACCTCTATACAATAT 58.924 40.000 0.00 0.00 0.00 1.28
527 528 5.452255 ACTCGACCCAACCTCTATACAATA 58.548 41.667 0.00 0.00 0.00 1.90
528 529 4.287552 ACTCGACCCAACCTCTATACAAT 58.712 43.478 0.00 0.00 0.00 2.71
529 530 3.705051 ACTCGACCCAACCTCTATACAA 58.295 45.455 0.00 0.00 0.00 2.41
530 531 3.377253 ACTCGACCCAACCTCTATACA 57.623 47.619 0.00 0.00 0.00 2.29
531 532 7.700022 ATATAACTCGACCCAACCTCTATAC 57.300 40.000 0.00 0.00 0.00 1.47
532 533 7.120285 CGAATATAACTCGACCCAACCTCTATA 59.880 40.741 2.26 0.00 38.61 1.31
533 534 6.072064 CGAATATAACTCGACCCAACCTCTAT 60.072 42.308 2.26 0.00 38.61 1.98
534 535 5.240183 CGAATATAACTCGACCCAACCTCTA 59.760 44.000 2.26 0.00 38.61 2.43
535 536 4.037684 CGAATATAACTCGACCCAACCTCT 59.962 45.833 2.26 0.00 38.61 3.69
536 537 4.037208 TCGAATATAACTCGACCCAACCTC 59.963 45.833 6.27 0.00 40.25 3.85
537 538 3.956199 TCGAATATAACTCGACCCAACCT 59.044 43.478 6.27 0.00 40.25 3.50
538 539 4.311816 TCGAATATAACTCGACCCAACC 57.688 45.455 6.27 0.00 40.25 3.77
545 546 5.587443 TGTCTCCAAGTCGAATATAACTCGA 59.413 40.000 6.27 6.27 42.75 4.04
546 547 5.817988 TGTCTCCAAGTCGAATATAACTCG 58.182 41.667 0.00 2.06 37.66 4.18
547 548 6.797454 ACTGTCTCCAAGTCGAATATAACTC 58.203 40.000 0.00 0.00 0.00 3.01
548 549 6.777213 ACTGTCTCCAAGTCGAATATAACT 57.223 37.500 0.00 0.00 0.00 2.24
556 557 9.570468 AGTATTATATTACTGTCTCCAAGTCGA 57.430 33.333 6.52 0.00 31.25 4.20
557 558 9.828852 GAGTATTATATTACTGTCTCCAAGTCG 57.171 37.037 11.16 0.00 32.59 4.18
559 560 9.884814 AGGAGTATTATATTACTGTCTCCAAGT 57.115 33.333 11.16 0.00 41.56 3.16
573 574 9.760926 TGCTGTCTCTTCATAGGAGTATTATAT 57.239 33.333 0.00 0.00 33.06 0.86
574 575 9.760926 ATGCTGTCTCTTCATAGGAGTATTATA 57.239 33.333 0.00 0.00 33.06 0.98
575 576 8.663209 ATGCTGTCTCTTCATAGGAGTATTAT 57.337 34.615 0.00 0.00 33.06 1.28
576 577 8.363390 CAATGCTGTCTCTTCATAGGAGTATTA 58.637 37.037 0.00 0.00 33.06 0.98
577 578 6.992664 ATGCTGTCTCTTCATAGGAGTATT 57.007 37.500 0.00 0.00 33.06 1.89
578 579 6.740960 GCAATGCTGTCTCTTCATAGGAGTAT 60.741 42.308 0.00 0.00 33.06 2.12
579 580 5.452496 GCAATGCTGTCTCTTCATAGGAGTA 60.452 44.000 0.00 0.00 33.06 2.59
580 581 4.682859 GCAATGCTGTCTCTTCATAGGAGT 60.683 45.833 0.00 0.00 33.06 3.85
581 582 3.808726 GCAATGCTGTCTCTTCATAGGAG 59.191 47.826 0.00 0.00 0.00 3.69
582 583 3.432749 GGCAATGCTGTCTCTTCATAGGA 60.433 47.826 4.82 0.00 0.00 2.94
583 584 2.877168 GGCAATGCTGTCTCTTCATAGG 59.123 50.000 4.82 0.00 0.00 2.57
584 585 3.806380 AGGCAATGCTGTCTCTTCATAG 58.194 45.455 4.82 0.00 28.72 2.23
585 586 3.920231 AGGCAATGCTGTCTCTTCATA 57.080 42.857 4.82 0.00 28.72 2.15
586 587 2.753452 CAAGGCAATGCTGTCTCTTCAT 59.247 45.455 4.82 0.00 36.11 2.57
587 588 2.156917 CAAGGCAATGCTGTCTCTTCA 58.843 47.619 4.82 0.00 36.11 3.02
588 589 2.157738 ACAAGGCAATGCTGTCTCTTC 58.842 47.619 4.82 0.00 36.11 2.87
589 590 2.283145 ACAAGGCAATGCTGTCTCTT 57.717 45.000 4.82 0.00 36.11 2.85
590 591 3.244700 ACTTACAAGGCAATGCTGTCTCT 60.245 43.478 4.82 0.00 36.11 3.10
591 592 3.077359 ACTTACAAGGCAATGCTGTCTC 58.923 45.455 4.82 0.00 36.11 3.36
592 593 3.077359 GACTTACAAGGCAATGCTGTCT 58.923 45.455 4.82 0.00 39.99 3.41
593 594 2.159653 CGACTTACAAGGCAATGCTGTC 60.160 50.000 4.82 2.40 31.90 3.51
594 595 1.806542 CGACTTACAAGGCAATGCTGT 59.193 47.619 4.82 5.20 31.90 4.40
595 596 1.806542 ACGACTTACAAGGCAATGCTG 59.193 47.619 4.82 0.00 31.90 4.41
596 597 2.185004 ACGACTTACAAGGCAATGCT 57.815 45.000 4.82 0.00 31.90 3.79
597 598 2.095372 GGTACGACTTACAAGGCAATGC 59.905 50.000 0.00 0.00 31.90 3.56
598 599 3.331150 TGGTACGACTTACAAGGCAATG 58.669 45.455 0.00 0.00 31.90 2.82
599 600 3.596214 CTGGTACGACTTACAAGGCAAT 58.404 45.455 0.00 0.00 31.90 3.56
600 601 2.868839 GCTGGTACGACTTACAAGGCAA 60.869 50.000 0.00 0.00 32.71 4.52
601 602 1.337447 GCTGGTACGACTTACAAGGCA 60.337 52.381 0.00 0.00 32.71 4.75
602 603 1.356938 GCTGGTACGACTTACAAGGC 58.643 55.000 0.00 0.00 32.71 4.35
603 604 1.068055 ACGCTGGTACGACTTACAAGG 60.068 52.381 0.00 0.00 32.71 3.61
604 605 2.342910 ACGCTGGTACGACTTACAAG 57.657 50.000 0.00 0.00 35.03 3.16
605 606 2.414559 GCTACGCTGGTACGACTTACAA 60.415 50.000 0.00 0.00 36.70 2.41
606 607 1.131126 GCTACGCTGGTACGACTTACA 59.869 52.381 0.00 0.00 36.70 2.41
607 608 1.399791 AGCTACGCTGGTACGACTTAC 59.600 52.381 0.00 0.00 37.57 2.34
608 609 1.742761 AGCTACGCTGGTACGACTTA 58.257 50.000 0.00 0.00 37.57 2.24
609 610 0.886563 AAGCTACGCTGGTACGACTT 59.113 50.000 0.00 0.00 39.62 3.01
610 611 0.450983 GAAGCTACGCTGGTACGACT 59.549 55.000 0.00 0.00 39.62 4.18
611 612 0.169672 TGAAGCTACGCTGGTACGAC 59.830 55.000 0.00 0.00 39.62 4.34
612 613 0.883153 TTGAAGCTACGCTGGTACGA 59.117 50.000 0.00 0.00 39.62 3.43
613 614 0.989890 GTTGAAGCTACGCTGGTACG 59.010 55.000 0.00 0.00 39.62 3.67
614 615 0.989890 CGTTGAAGCTACGCTGGTAC 59.010 55.000 0.00 0.00 39.62 3.34
615 616 0.883153 TCGTTGAAGCTACGCTGGTA 59.117 50.000 2.58 0.00 39.62 3.25
616 617 0.032952 TTCGTTGAAGCTACGCTGGT 59.967 50.000 2.58 0.00 39.62 4.00
617 618 0.716108 CTTCGTTGAAGCTACGCTGG 59.284 55.000 2.58 0.00 39.62 4.85
618 619 0.716108 CCTTCGTTGAAGCTACGCTG 59.284 55.000 2.58 0.00 39.62 5.18
619 620 0.317479 ACCTTCGTTGAAGCTACGCT 59.683 50.000 2.58 0.00 42.56 5.07
620 621 0.438830 CACCTTCGTTGAAGCTACGC 59.561 55.000 2.58 0.00 38.24 4.42
621 622 1.719780 GACACCTTCGTTGAAGCTACG 59.280 52.381 0.98 0.98 38.24 3.51
622 623 2.067013 GGACACCTTCGTTGAAGCTAC 58.933 52.381 1.01 0.00 38.24 3.58
623 624 1.689813 TGGACACCTTCGTTGAAGCTA 59.310 47.619 1.01 0.00 38.24 3.32
624 625 0.468226 TGGACACCTTCGTTGAAGCT 59.532 50.000 1.01 0.00 38.24 3.74
625 626 0.586802 GTGGACACCTTCGTTGAAGC 59.413 55.000 1.01 0.00 38.24 3.86
626 627 0.859232 CGTGGACACCTTCGTTGAAG 59.141 55.000 0.00 0.00 39.17 3.02
627 628 0.460722 TCGTGGACACCTTCGTTGAA 59.539 50.000 0.00 0.00 0.00 2.69
628 629 0.031585 CTCGTGGACACCTTCGTTGA 59.968 55.000 0.00 0.00 0.00 3.18
629 630 0.249322 ACTCGTGGACACCTTCGTTG 60.249 55.000 0.00 0.00 0.00 4.10
630 631 0.249322 CACTCGTGGACACCTTCGTT 60.249 55.000 0.00 0.00 0.00 3.85
631 632 1.362717 CACTCGTGGACACCTTCGT 59.637 57.895 0.00 0.00 0.00 3.85
632 633 4.245054 CACTCGTGGACACCTTCG 57.755 61.111 0.00 0.00 0.00 3.79
642 643 1.979155 TCTCTCCCTGCCACTCGTG 60.979 63.158 0.00 0.00 0.00 4.35
643 644 1.979693 GTCTCTCCCTGCCACTCGT 60.980 63.158 0.00 0.00 0.00 4.18
644 645 2.888863 GTCTCTCCCTGCCACTCG 59.111 66.667 0.00 0.00 0.00 4.18
645 646 2.888863 CGTCTCTCCCTGCCACTC 59.111 66.667 0.00 0.00 0.00 3.51
646 647 3.386237 GCGTCTCTCCCTGCCACT 61.386 66.667 0.00 0.00 0.00 4.00
647 648 3.386237 AGCGTCTCTCCCTGCCAC 61.386 66.667 0.00 0.00 0.00 5.01
648 649 3.385384 CAGCGTCTCTCCCTGCCA 61.385 66.667 0.00 0.00 0.00 4.92
705 706 1.075374 TGACTCCATTCCTTGGTTGGG 59.925 52.381 10.04 0.00 46.52 4.12
713 714 6.540189 CAGAAACGAATATTGACTCCATTCCT 59.460 38.462 0.00 0.00 0.00 3.36
715 716 7.308782 ACAGAAACGAATATTGACTCCATTC 57.691 36.000 0.00 0.00 0.00 2.67
717 718 6.878923 TGAACAGAAACGAATATTGACTCCAT 59.121 34.615 0.00 0.00 0.00 3.41
718 719 6.147164 GTGAACAGAAACGAATATTGACTCCA 59.853 38.462 0.00 0.00 0.00 3.86
719 720 6.147164 TGTGAACAGAAACGAATATTGACTCC 59.853 38.462 0.00 0.00 0.00 3.85
783 784 7.446319 TCGAGACAAGTCCTAATCGGATTATTA 59.554 37.037 10.67 0.34 45.44 0.98
784 785 6.264744 TCGAGACAAGTCCTAATCGGATTATT 59.735 38.462 10.67 0.41 45.44 1.40
790 791 3.607310 CGATCGAGACAAGTCCTAATCGG 60.607 52.174 10.26 0.00 33.13 4.18
812 813 1.134220 TCCGATTTGGCATGGTAGGTC 60.134 52.381 0.00 0.00 37.80 3.85
814 815 1.134098 ACTCCGATTTGGCATGGTAGG 60.134 52.381 0.00 0.00 37.80 3.18
878 885 2.602257 TGTATGGATGGAGCTGTTCG 57.398 50.000 0.00 0.00 0.00 3.95
921 928 9.710900 CTCGCTCTCTCAGATGATATATAGTAT 57.289 37.037 0.00 0.00 0.00 2.12
922 929 7.655732 GCTCGCTCTCTCAGATGATATATAGTA 59.344 40.741 0.00 0.00 0.00 1.82
923 930 6.483307 GCTCGCTCTCTCAGATGATATATAGT 59.517 42.308 0.00 0.00 0.00 2.12
924 931 6.707608 AGCTCGCTCTCTCAGATGATATATAG 59.292 42.308 0.00 0.00 0.00 1.31
925 932 6.591001 AGCTCGCTCTCTCAGATGATATATA 58.409 40.000 0.00 0.00 0.00 0.86
926 933 5.439721 AGCTCGCTCTCTCAGATGATATAT 58.560 41.667 0.00 0.00 0.00 0.86
927 934 4.842574 AGCTCGCTCTCTCAGATGATATA 58.157 43.478 0.00 0.00 0.00 0.86
928 935 3.689347 AGCTCGCTCTCTCAGATGATAT 58.311 45.455 0.00 0.00 0.00 1.63
929 936 3.138884 AGCTCGCTCTCTCAGATGATA 57.861 47.619 0.00 0.00 0.00 2.15
930 937 1.985473 AGCTCGCTCTCTCAGATGAT 58.015 50.000 0.00 0.00 0.00 2.45
931 938 1.675483 GAAGCTCGCTCTCTCAGATGA 59.325 52.381 0.00 0.00 0.00 2.92
937 944 0.660488 TGATCGAAGCTCGCTCTCTC 59.340 55.000 0.00 0.00 40.21 3.20
956 963 1.573108 CTAGGACACCCACATGACCT 58.427 55.000 0.00 2.52 45.15 3.85
959 966 1.195115 GAGCTAGGACACCCACATGA 58.805 55.000 0.00 0.00 33.88 3.07
970 977 0.825410 AGACGAGACGAGAGCTAGGA 59.175 55.000 0.00 0.00 0.00 2.94
1192 1199 3.441163 TGTAATAGAAGGCGTTGTAGCG 58.559 45.455 0.00 0.00 38.18 4.26
1209 1216 3.350612 GCGGTGGCGTTGCTGTAA 61.351 61.111 0.00 0.00 0.00 2.41
1226 1233 1.079127 ACGACGGAGGCAATGAAGG 60.079 57.895 0.00 0.00 0.00 3.46
1233 1240 2.994995 ATGACCACGACGGAGGCA 60.995 61.111 8.33 3.04 38.63 4.75
1323 1330 4.457496 ATGACCACCCTGAGCGCG 62.457 66.667 0.00 0.00 0.00 6.86
1434 2789 2.618053 CCTGTGATGTAGACGGAAACC 58.382 52.381 0.00 0.00 0.00 3.27
1437 2792 1.557099 AGCCTGTGATGTAGACGGAA 58.443 50.000 0.00 0.00 0.00 4.30
1508 2863 3.256960 ATGGGCCGTGGTGGTCTT 61.257 61.111 0.00 0.00 44.07 3.01
1519 2874 2.514824 GAGGTTGAGCGATGGGCC 60.515 66.667 0.00 0.00 45.17 5.80
1532 2887 4.443266 GCCGCTCGAGCTTGAGGT 62.443 66.667 32.88 0.00 39.32 3.85
1674 3029 2.050269 CGAGTGGTGTTGGTCCTCT 58.950 57.895 0.00 0.00 0.00 3.69
1743 3098 5.989777 TCTGCTAACTGAACTAACTGAAACC 59.010 40.000 0.00 0.00 0.00 3.27
1774 3159 6.183360 ACCTGACGAAAAGGAAAAACTAACTG 60.183 38.462 9.28 0.00 38.27 3.16
1781 3166 6.404954 CCAACTAACCTGACGAAAAGGAAAAA 60.405 38.462 9.28 0.00 38.27 1.94
1828 3213 1.303309 CAATTCCTCCCAGATCGCAC 58.697 55.000 0.00 0.00 0.00 5.34
1985 3379 5.109662 TCTCTAAAACACACACGAGAGAG 57.890 43.478 0.00 0.00 35.64 3.20
2002 3403 2.491675 TGTTGCCTCTCGACTCTCTA 57.508 50.000 0.00 0.00 0.00 2.43
2216 3617 3.909258 CTCGGCGTAGTTGGTGCGT 62.909 63.158 6.85 0.00 36.50 5.24
2255 3656 1.453928 GCCATGGGCCTGAAGGTAC 60.454 63.158 15.13 0.00 44.06 3.34
2612 4013 3.047877 GCGAACTGGGGTGGAACG 61.048 66.667 0.00 0.00 38.12 3.95
2681 4082 3.374402 CTGCCGGTGACCTCGTCT 61.374 66.667 1.90 0.00 33.15 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.