Multiple sequence alignment - TraesCS5B01G344900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G344900 chr5B 100.000 3572 0 0 1 3572 527611418 527607847 0.000000e+00 6597.0
1 TraesCS5B01G344900 chr5B 92.879 1980 95 12 961 2929 527789362 527787418 0.000000e+00 2833.0
2 TraesCS5B01G344900 chr5B 95.538 650 22 2 2924 3572 527787381 527786738 0.000000e+00 1033.0
3 TraesCS5B01G344900 chr5B 78.655 1026 135 37 1726 2705 527775065 527774078 3.940000e-169 604.0
4 TraesCS5B01G344900 chr5B 77.133 1137 180 41 1621 2705 527497242 527496134 1.430000e-163 586.0
5 TraesCS5B01G344900 chr5B 82.573 482 74 10 3081 3554 528525286 528524807 1.980000e-112 416.0
6 TraesCS5B01G344900 chr5B 81.092 513 85 11 3050 3554 527060221 527060729 2.000000e-107 399.0
7 TraesCS5B01G344900 chr5B 88.162 321 38 0 176 496 527776771 527776451 2.010000e-102 383.0
8 TraesCS5B01G344900 chr5B 92.063 189 13 2 1 187 527778894 527778706 7.600000e-67 265.0
9 TraesCS5B01G344900 chr5B 94.737 114 6 0 495 608 70910794 70910681 1.020000e-40 178.0
10 TraesCS5B01G344900 chr5D 93.382 2629 111 11 961 3572 434652911 434655493 0.000000e+00 3832.0
11 TraesCS5B01G344900 chr5D 93.072 2598 112 23 982 3572 434571835 434569299 0.000000e+00 3738.0
12 TraesCS5B01G344900 chr5D 83.522 619 80 15 2951 3556 434576566 434575957 3.110000e-155 558.0
13 TraesCS5B01G344900 chr5D 87.111 450 55 3 3126 3572 434662445 434662894 1.140000e-139 507.0
14 TraesCS5B01G344900 chr5D 81.583 619 76 20 2331 2928 434661607 434662208 8.970000e-131 477.0
15 TraesCS5B01G344900 chr5D 81.871 513 85 7 3048 3554 435238220 435237710 3.300000e-115 425.0
16 TraesCS5B01G344900 chr5D 80.156 514 90 11 3050 3554 434331912 434331402 1.210000e-99 374.0
17 TraesCS5B01G344900 chr5D 80.804 448 63 16 2405 2842 434712395 434712829 2.660000e-86 329.0
18 TraesCS5B01G344900 chr5D 76.694 605 102 21 1732 2317 434554036 434553452 2.080000e-77 300.0
19 TraesCS5B01G344900 chr5D 80.253 395 74 3 1809 2200 434711828 434712221 9.700000e-76 294.0
20 TraesCS5B01G344900 chr5D 90.116 172 15 2 1 170 434704119 434704290 4.640000e-54 222.0
21 TraesCS5B01G344900 chr5D 75.427 468 93 19 2714 3171 434604508 434604053 1.300000e-49 207.0
22 TraesCS5B01G344900 chr5D 95.575 113 5 0 495 607 57849817 57849929 7.880000e-42 182.0
23 TraesCS5B01G344900 chr5D 93.137 102 6 1 2563 2664 434604742 434604642 7.990000e-32 148.0
24 TraesCS5B01G344900 chr5D 79.845 129 23 2 2075 2200 434605308 434605180 1.370000e-14 91.6
25 TraesCS5B01G344900 chr5A 80.156 514 90 11 3050 3554 548226123 548226633 1.210000e-99 374.0
26 TraesCS5B01G344900 chr3B 96.429 112 4 0 495 606 372486261 372486372 6.090000e-43 185.0
27 TraesCS5B01G344900 chr3A 96.396 111 4 0 493 603 608685043 608685153 2.190000e-42 183.0
28 TraesCS5B01G344900 chr7D 93.966 116 7 0 487 602 126669690 126669805 3.670000e-40 176.0
29 TraesCS5B01G344900 chr7B 94.017 117 5 2 487 602 137792740 137792625 3.670000e-40 176.0
30 TraesCS5B01G344900 chr3D 93.277 119 8 0 484 602 301420071 301420189 3.670000e-40 176.0
31 TraesCS5B01G344900 chr6B 92.623 122 8 1 484 604 641046961 641047082 1.320000e-39 174.0
32 TraesCS5B01G344900 chr6D 95.327 107 5 0 495 601 112344482 112344376 1.710000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G344900 chr5B 527607847 527611418 3571 True 6597.000000 6597 100.000000 1 3572 1 chr5B.!!$R3 3571
1 TraesCS5B01G344900 chr5B 527786738 527789362 2624 True 1933.000000 2833 94.208500 961 3572 2 chr5B.!!$R6 2611
2 TraesCS5B01G344900 chr5B 527496134 527497242 1108 True 586.000000 586 77.133000 1621 2705 1 chr5B.!!$R2 1084
3 TraesCS5B01G344900 chr5B 527774078 527778894 4816 True 417.333333 604 86.293333 1 2705 3 chr5B.!!$R5 2704
4 TraesCS5B01G344900 chr5B 527060221 527060729 508 False 399.000000 399 81.092000 3050 3554 1 chr5B.!!$F1 504
5 TraesCS5B01G344900 chr5D 434652911 434655493 2582 False 3832.000000 3832 93.382000 961 3572 1 chr5D.!!$F2 2611
6 TraesCS5B01G344900 chr5D 434569299 434571835 2536 True 3738.000000 3738 93.072000 982 3572 1 chr5D.!!$R3 2590
7 TraesCS5B01G344900 chr5D 434575957 434576566 609 True 558.000000 558 83.522000 2951 3556 1 chr5D.!!$R4 605
8 TraesCS5B01G344900 chr5D 434661607 434662894 1287 False 492.000000 507 84.347000 2331 3572 2 chr5D.!!$F4 1241
9 TraesCS5B01G344900 chr5D 435237710 435238220 510 True 425.000000 425 81.871000 3048 3554 1 chr5D.!!$R5 506
10 TraesCS5B01G344900 chr5D 434331402 434331912 510 True 374.000000 374 80.156000 3050 3554 1 chr5D.!!$R1 504
11 TraesCS5B01G344900 chr5D 434711828 434712829 1001 False 311.500000 329 80.528500 1809 2842 2 chr5D.!!$F5 1033
12 TraesCS5B01G344900 chr5D 434553452 434554036 584 True 300.000000 300 76.694000 1732 2317 1 chr5D.!!$R2 585
13 TraesCS5B01G344900 chr5A 548226123 548226633 510 False 374.000000 374 80.156000 3050 3554 1 chr5A.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 2593 0.040958 CTCACAACAACAGCGAAGGC 60.041 55.0 0.00 0.0 40.37 4.35 F
911 3223 0.109132 GACGTCCGTATTCGTGGGTT 60.109 55.0 3.51 0.0 40.39 4.11 F
938 3250 0.245539 TTTACCGAAGCTCGACCCTG 59.754 55.0 7.07 0.0 43.74 4.45 F
939 3251 0.609957 TTACCGAAGCTCGACCCTGA 60.610 55.0 7.07 0.0 43.74 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 3999 1.160329 CCAAGTGCCGCTATGCCTAC 61.160 60.000 0.00 0.00 0.00 3.18 R
1753 4190 1.275291 TCGTCCATCTTCCTGGTGAAC 59.725 52.381 0.00 0.00 37.57 3.18 R
2294 4799 1.454201 AGACAGACTCGATCGCTGAA 58.546 50.000 22.67 1.47 33.94 3.02 R
2867 5400 6.069847 TCGGGACTTTGGGATAAGAAATAAGT 60.070 38.462 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 7.709601 ACAATTCCCTCCCTAACTTTTTATCT 58.290 34.615 0.00 0.00 0.00 1.98
63 65 9.121658 CAATTCCCTCCCTAACTTTTTATCTAC 57.878 37.037 0.00 0.00 0.00 2.59
69 71 7.125963 CCTCCCTAACTTTTTATCTACTCCACT 59.874 40.741 0.00 0.00 0.00 4.00
76 78 7.168219 ACTTTTTATCTACTCCACTCATGCAA 58.832 34.615 0.00 0.00 0.00 4.08
78 80 3.834489 ATCTACTCCACTCATGCAAGG 57.166 47.619 0.00 0.00 0.00 3.61
84 86 0.107312 CCACTCATGCAAGGGGAGAG 60.107 60.000 0.00 0.35 43.02 3.20
100 103 4.161001 GGGGAGAGTGAATGCAAATCAAAT 59.839 41.667 7.09 0.38 0.00 2.32
126 129 5.896073 TTTATTGTCCAACCCAATTTGGT 57.104 34.783 14.26 0.00 45.60 3.67
175 178 7.979444 TTTCATGTTTACAAGCTTAGCTAGT 57.021 32.000 7.32 0.00 38.25 2.57
193 2142 3.211963 GCCATGCCGTCCACCATC 61.212 66.667 0.00 0.00 0.00 3.51
221 2170 2.757099 CCACATGCCCCTGCTTCC 60.757 66.667 0.00 0.00 38.71 3.46
224 2173 1.927527 ACATGCCCCTGCTTCCTCT 60.928 57.895 0.00 0.00 38.71 3.69
231 2180 1.280457 CCCTGCTTCCTCTACCTGTT 58.720 55.000 0.00 0.00 0.00 3.16
232 2181 1.065854 CCCTGCTTCCTCTACCTGTTG 60.066 57.143 0.00 0.00 0.00 3.33
239 2188 1.203187 TCCTCTACCTGTTGCTCCAGT 60.203 52.381 3.13 0.00 0.00 4.00
251 2200 3.612247 CTCCAGTGGTGAAGGGGCG 62.612 68.421 9.54 0.00 0.00 6.13
270 2219 4.475527 GGAACCAAGTGCCTCGTT 57.524 55.556 0.00 0.00 0.00 3.85
276 2225 0.391263 CCAAGTGCCTCGTTCCCTAC 60.391 60.000 0.00 0.00 0.00 3.18
293 2242 6.080969 TCCCTACTCCTAGATATGCTTAGG 57.919 45.833 0.00 0.00 0.00 2.69
301 2250 7.067496 TCCTAGATATGCTTAGGGTTTTCTG 57.933 40.000 0.00 0.00 0.00 3.02
304 2253 6.313519 AGATATGCTTAGGGTTTTCTGACA 57.686 37.500 0.00 0.00 0.00 3.58
308 2257 4.894784 TGCTTAGGGTTTTCTGACAGTAG 58.105 43.478 1.59 0.00 0.00 2.57
309 2258 3.685272 GCTTAGGGTTTTCTGACAGTAGC 59.315 47.826 1.59 0.00 0.00 3.58
327 2276 4.157120 GCTTAGGGCGGCGAAGGA 62.157 66.667 12.98 0.00 0.00 3.36
343 2292 6.443792 GGCGAAGGAGTTTCAAAATAAAAGA 58.556 36.000 0.00 0.00 35.43 2.52
345 2294 7.139392 GCGAAGGAGTTTCAAAATAAAAGACT 58.861 34.615 0.00 0.00 35.43 3.24
364 2313 6.783708 AGACTTTCTATAGAAGACCACCAG 57.216 41.667 14.63 10.16 35.21 4.00
369 2318 2.642171 ATAGAAGACCACCAGACCCA 57.358 50.000 0.00 0.00 0.00 4.51
370 2319 2.409064 TAGAAGACCACCAGACCCAA 57.591 50.000 0.00 0.00 0.00 4.12
378 2327 3.111484 ACCACCAGACCCAAATGTTTTT 58.889 40.909 0.00 0.00 0.00 1.94
398 2347 0.529773 GTTCAGTGTGACTGCGACCA 60.530 55.000 0.00 0.00 45.54 4.02
416 2365 3.707102 GACCAAGACCAGGCTATAGAAGT 59.293 47.826 3.21 0.00 0.00 3.01
421 2370 3.702045 AGACCAGGCTATAGAAGTGTGTC 59.298 47.826 3.21 6.85 0.00 3.67
422 2371 3.441101 ACCAGGCTATAGAAGTGTGTCA 58.559 45.455 3.21 0.00 0.00 3.58
431 2380 6.980978 GCTATAGAAGTGTGTCATCTTGCTTA 59.019 38.462 3.21 0.00 0.00 3.09
460 2409 2.194597 GGGGTTGTGTGCACTCCA 59.805 61.111 19.41 11.92 0.00 3.86
462 2411 1.040339 GGGGTTGTGTGCACTCCAAA 61.040 55.000 19.41 2.93 0.00 3.28
474 2423 2.821546 CACTCCAAAGTCGTTGTGAGA 58.178 47.619 17.35 1.69 37.67 3.27
488 2437 6.145534 GTCGTTGTGAGAAATGTGATGTCTTA 59.854 38.462 0.00 0.00 0.00 2.10
492 2441 7.984422 TGTGAGAAATGTGATGTCTTATTGT 57.016 32.000 0.00 0.00 0.00 2.71
493 2442 7.809665 TGTGAGAAATGTGATGTCTTATTGTG 58.190 34.615 0.00 0.00 0.00 3.33
494 2443 7.445096 TGTGAGAAATGTGATGTCTTATTGTGT 59.555 33.333 0.00 0.00 0.00 3.72
495 2444 8.935844 GTGAGAAATGTGATGTCTTATTGTGTA 58.064 33.333 0.00 0.00 0.00 2.90
496 2445 8.935844 TGAGAAATGTGATGTCTTATTGTGTAC 58.064 33.333 0.00 0.00 0.00 2.90
497 2446 9.155975 GAGAAATGTGATGTCTTATTGTGTACT 57.844 33.333 0.00 0.00 0.00 2.73
498 2447 9.155975 AGAAATGTGATGTCTTATTGTGTACTC 57.844 33.333 0.00 0.00 0.00 2.59
499 2448 7.849804 AATGTGATGTCTTATTGTGTACTCC 57.150 36.000 0.00 0.00 0.00 3.85
500 2449 5.730550 TGTGATGTCTTATTGTGTACTCCC 58.269 41.667 0.00 0.00 0.00 4.30
501 2450 5.483937 TGTGATGTCTTATTGTGTACTCCCT 59.516 40.000 0.00 0.00 0.00 4.20
502 2451 6.043411 GTGATGTCTTATTGTGTACTCCCTC 58.957 44.000 0.00 0.00 0.00 4.30
503 2452 5.128827 TGATGTCTTATTGTGTACTCCCTCC 59.871 44.000 0.00 0.00 0.00 4.30
504 2453 3.446161 TGTCTTATTGTGTACTCCCTCCG 59.554 47.826 0.00 0.00 0.00 4.63
505 2454 3.446516 GTCTTATTGTGTACTCCCTCCGT 59.553 47.826 0.00 0.00 0.00 4.69
506 2455 4.081807 GTCTTATTGTGTACTCCCTCCGTT 60.082 45.833 0.00 0.00 0.00 4.44
507 2456 4.159135 TCTTATTGTGTACTCCCTCCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
508 2457 0.599558 TTGTGTACTCCCTCCGTTCG 59.400 55.000 0.00 0.00 0.00 3.95
509 2458 1.246056 TGTGTACTCCCTCCGTTCGG 61.246 60.000 4.74 4.74 0.00 4.30
510 2459 0.962356 GTGTACTCCCTCCGTTCGGA 60.962 60.000 13.34 13.34 0.00 4.55
511 2460 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
512 2461 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
513 2462 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
514 2463 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
515 2464 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
516 2465 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
517 2466 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
518 2467 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
519 2468 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
520 2469 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
521 2470 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
522 2471 4.181578 CTCCGTTCGGAATTACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
523 2472 5.327616 TCCGTTCGGAATTACTTGTCATA 57.672 39.130 11.66 0.00 0.00 2.15
524 2473 5.345702 TCCGTTCGGAATTACTTGTCATAG 58.654 41.667 11.66 0.00 0.00 2.23
525 2474 5.125900 TCCGTTCGGAATTACTTGTCATAGA 59.874 40.000 11.66 0.00 0.00 1.98
526 2475 5.808540 CCGTTCGGAATTACTTGTCATAGAA 59.191 40.000 5.19 0.00 0.00 2.10
527 2476 6.311935 CCGTTCGGAATTACTTGTCATAGAAA 59.688 38.462 5.19 0.00 0.00 2.52
528 2477 7.011109 CCGTTCGGAATTACTTGTCATAGAAAT 59.989 37.037 5.19 0.00 0.00 2.17
529 2478 7.846107 CGTTCGGAATTACTTGTCATAGAAATG 59.154 37.037 0.00 0.00 0.00 2.32
530 2479 7.786178 TCGGAATTACTTGTCATAGAAATGG 57.214 36.000 0.00 0.00 33.61 3.16
531 2480 7.561251 TCGGAATTACTTGTCATAGAAATGGA 58.439 34.615 0.00 0.00 33.61 3.41
532 2481 8.210946 TCGGAATTACTTGTCATAGAAATGGAT 58.789 33.333 0.00 0.00 33.61 3.41
533 2482 8.285394 CGGAATTACTTGTCATAGAAATGGATG 58.715 37.037 0.00 0.00 33.61 3.51
534 2483 9.125026 GGAATTACTTGTCATAGAAATGGATGT 57.875 33.333 0.00 0.00 33.61 3.06
543 2492 8.515414 TGTCATAGAAATGGATGTATCTAGACG 58.485 37.037 0.00 0.00 31.98 4.18
544 2493 8.516234 GTCATAGAAATGGATGTATCTAGACGT 58.484 37.037 0.00 0.00 33.61 4.34
545 2494 9.734984 TCATAGAAATGGATGTATCTAGACGTA 57.265 33.333 0.00 0.00 33.61 3.57
572 2521 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
573 2522 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
574 2523 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
575 2524 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
576 2525 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
577 2526 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
578 2527 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
579 2528 5.989477 AGATACATCCATTTCCGAGACAAA 58.011 37.500 0.00 0.00 0.00 2.83
580 2529 6.595682 AGATACATCCATTTCCGAGACAAAT 58.404 36.000 0.00 0.00 0.00 2.32
581 2530 7.735917 AGATACATCCATTTCCGAGACAAATA 58.264 34.615 0.00 0.00 0.00 1.40
582 2531 8.210946 AGATACATCCATTTCCGAGACAAATAA 58.789 33.333 0.00 0.00 0.00 1.40
583 2532 8.924511 ATACATCCATTTCCGAGACAAATAAT 57.075 30.769 0.00 0.00 0.00 1.28
584 2533 7.645058 ACATCCATTTCCGAGACAAATAATT 57.355 32.000 0.00 0.00 0.00 1.40
585 2534 7.707104 ACATCCATTTCCGAGACAAATAATTC 58.293 34.615 0.00 0.00 0.00 2.17
586 2535 6.693315 TCCATTTCCGAGACAAATAATTCC 57.307 37.500 0.00 0.00 0.00 3.01
587 2536 5.295787 TCCATTTCCGAGACAAATAATTCCG 59.704 40.000 0.00 0.00 0.00 4.30
588 2537 5.295787 CCATTTCCGAGACAAATAATTCCGA 59.704 40.000 0.00 0.00 0.00 4.55
589 2538 6.183360 CCATTTCCGAGACAAATAATTCCGAA 60.183 38.462 0.00 0.00 0.00 4.30
590 2539 5.789710 TTCCGAGACAAATAATTCCGAAC 57.210 39.130 0.00 0.00 0.00 3.95
591 2540 3.861113 TCCGAGACAAATAATTCCGAACG 59.139 43.478 0.00 0.00 0.00 3.95
592 2541 3.000925 CCGAGACAAATAATTCCGAACGG 59.999 47.826 6.94 6.94 0.00 4.44
593 2542 3.861113 CGAGACAAATAATTCCGAACGGA 59.139 43.478 12.04 12.04 43.52 4.69
594 2543 4.026804 CGAGACAAATAATTCCGAACGGAG 60.027 45.833 15.34 5.60 46.06 4.63
595 2544 5.080969 AGACAAATAATTCCGAACGGAGA 57.919 39.130 15.34 8.02 46.06 3.71
596 2545 5.484715 AGACAAATAATTCCGAACGGAGAA 58.515 37.500 15.34 3.20 46.06 2.87
597 2546 5.935789 AGACAAATAATTCCGAACGGAGAAA 59.064 36.000 15.34 2.49 46.06 2.52
601 2550 7.551617 ACAAATAATTCCGAACGGAGAAAGTAT 59.448 33.333 15.34 8.01 46.06 2.12
619 2568 9.355215 AGAAAGTATAAGTCATCAAGTGTTACG 57.645 33.333 0.00 0.00 0.00 3.18
626 2575 6.761099 AGTCATCAAGTGTTACGTATCTCT 57.239 37.500 0.00 0.00 0.00 3.10
629 2578 6.469595 GTCATCAAGTGTTACGTATCTCTCAC 59.530 42.308 8.29 7.59 0.00 3.51
630 2579 5.952526 TCAAGTGTTACGTATCTCTCACA 57.047 39.130 8.29 0.75 0.00 3.58
631 2580 6.321848 TCAAGTGTTACGTATCTCTCACAA 57.678 37.500 8.29 0.00 0.00 3.33
632 2581 6.147581 TCAAGTGTTACGTATCTCTCACAAC 58.852 40.000 8.29 0.00 0.00 3.32
633 2582 5.700722 AGTGTTACGTATCTCTCACAACA 57.299 39.130 0.00 0.00 0.00 3.33
634 2583 6.080648 AGTGTTACGTATCTCTCACAACAA 57.919 37.500 0.00 0.00 0.00 2.83
635 2584 5.919141 AGTGTTACGTATCTCTCACAACAAC 59.081 40.000 0.00 0.00 0.00 3.32
638 2587 3.318017 ACGTATCTCTCACAACAACAGC 58.682 45.455 0.00 0.00 0.00 4.40
639 2588 2.342651 CGTATCTCTCACAACAACAGCG 59.657 50.000 0.00 0.00 0.00 5.18
640 2589 2.820059 ATCTCTCACAACAACAGCGA 57.180 45.000 0.00 0.00 0.00 4.93
641 2590 2.595124 TCTCTCACAACAACAGCGAA 57.405 45.000 0.00 0.00 0.00 4.70
642 2591 2.473816 TCTCTCACAACAACAGCGAAG 58.526 47.619 0.00 0.00 0.00 3.79
643 2592 1.528586 CTCTCACAACAACAGCGAAGG 59.471 52.381 0.00 0.00 0.00 3.46
644 2593 0.040958 CTCACAACAACAGCGAAGGC 60.041 55.000 0.00 0.00 40.37 4.35
645 2594 0.746204 TCACAACAACAGCGAAGGCA 60.746 50.000 0.00 0.00 43.41 4.75
646 2595 0.311790 CACAACAACAGCGAAGGCAT 59.688 50.000 0.00 0.00 43.41 4.40
647 2596 0.311790 ACAACAACAGCGAAGGCATG 59.688 50.000 0.00 0.00 43.41 4.06
648 2597 0.311790 CAACAACAGCGAAGGCATGT 59.688 50.000 0.00 0.00 43.41 3.21
651 2600 0.386352 CAACAGCGAAGGCATGTGTG 60.386 55.000 0.00 0.00 43.41 3.82
664 2613 1.347050 CATGTGTGGGATGGCCAAAAA 59.653 47.619 10.96 0.00 35.15 1.94
666 2615 1.622811 TGTGTGGGATGGCCAAAAATC 59.377 47.619 10.96 1.47 35.15 2.17
667 2616 0.894141 TGTGGGATGGCCAAAAATCG 59.106 50.000 10.96 0.00 35.15 3.34
668 2617 1.181786 GTGGGATGGCCAAAAATCGA 58.818 50.000 10.96 0.00 35.15 3.59
669 2618 1.135112 GTGGGATGGCCAAAAATCGAC 60.135 52.381 10.96 1.50 35.15 4.20
671 2620 1.091537 GGATGGCCAAAAATCGACGA 58.908 50.000 10.96 0.00 0.00 4.20
672 2621 1.064060 GGATGGCCAAAAATCGACGAG 59.936 52.381 10.96 0.00 0.00 4.18
674 2623 0.958382 TGGCCAAAAATCGACGAGGG 60.958 55.000 0.61 1.05 0.00 4.30
675 2624 0.958876 GGCCAAAAATCGACGAGGGT 60.959 55.000 3.01 0.00 0.00 4.34
676 2625 0.446616 GCCAAAAATCGACGAGGGTC 59.553 55.000 3.01 0.00 39.89 4.46
677 2626 1.084289 CCAAAAATCGACGAGGGTCC 58.916 55.000 3.01 0.00 40.17 4.46
678 2627 1.338769 CCAAAAATCGACGAGGGTCCT 60.339 52.381 3.01 0.00 40.17 3.85
679 2628 2.000447 CAAAAATCGACGAGGGTCCTC 59.000 52.381 3.01 6.94 40.17 3.71
681 2630 2.431954 AAATCGACGAGGGTCCTCTA 57.568 50.000 14.34 0.00 40.17 2.43
682 2631 2.431954 AATCGACGAGGGTCCTCTAA 57.568 50.000 14.34 0.00 40.17 2.10
683 2632 2.431954 ATCGACGAGGGTCCTCTAAA 57.568 50.000 14.34 0.00 40.17 1.85
684 2633 2.205022 TCGACGAGGGTCCTCTAAAA 57.795 50.000 14.34 0.00 40.17 1.52
685 2634 2.731572 TCGACGAGGGTCCTCTAAAAT 58.268 47.619 14.34 0.00 40.17 1.82
686 2635 2.426024 TCGACGAGGGTCCTCTAAAATG 59.574 50.000 14.34 1.41 40.17 2.32
687 2636 2.426024 CGACGAGGGTCCTCTAAAATGA 59.574 50.000 14.34 0.00 40.17 2.57
688 2637 3.119245 CGACGAGGGTCCTCTAAAATGAA 60.119 47.826 14.34 0.00 40.17 2.57
690 2639 3.055312 ACGAGGGTCCTCTAAAATGAACC 60.055 47.826 14.34 0.00 40.69 3.62
691 2640 3.055385 CGAGGGTCCTCTAAAATGAACCA 60.055 47.826 14.34 0.00 38.38 3.67
692 2641 4.262617 GAGGGTCCTCTAAAATGAACCAC 58.737 47.826 9.64 0.00 38.38 4.16
693 2642 3.007635 GGGTCCTCTAAAATGAACCACG 58.992 50.000 0.00 0.00 35.86 4.94
695 2644 4.320870 GGTCCTCTAAAATGAACCACGAA 58.679 43.478 0.00 0.00 0.00 3.85
696 2645 4.758165 GGTCCTCTAAAATGAACCACGAAA 59.242 41.667 0.00 0.00 0.00 3.46
697 2646 5.239963 GGTCCTCTAAAATGAACCACGAAAA 59.760 40.000 0.00 0.00 0.00 2.29
698 2647 6.238814 GGTCCTCTAAAATGAACCACGAAAAA 60.239 38.462 0.00 0.00 0.00 1.94
699 2648 6.856426 GTCCTCTAAAATGAACCACGAAAAAG 59.144 38.462 0.00 0.00 0.00 2.27
700 2649 6.768861 TCCTCTAAAATGAACCACGAAAAAGA 59.231 34.615 0.00 0.00 0.00 2.52
701 2650 7.283580 TCCTCTAAAATGAACCACGAAAAAGAA 59.716 33.333 0.00 0.00 0.00 2.52
702 2651 7.918562 CCTCTAAAATGAACCACGAAAAAGAAA 59.081 33.333 0.00 0.00 0.00 2.52
703 2652 8.850454 TCTAAAATGAACCACGAAAAAGAAAG 57.150 30.769 0.00 0.00 0.00 2.62
705 2654 5.845391 AATGAACCACGAAAAAGAAAGGA 57.155 34.783 0.00 0.00 0.00 3.36
706 2655 4.893424 TGAACCACGAAAAAGAAAGGAG 57.107 40.909 0.00 0.00 0.00 3.69
707 2656 4.519213 TGAACCACGAAAAAGAAAGGAGA 58.481 39.130 0.00 0.00 0.00 3.71
708 2657 5.130350 TGAACCACGAAAAAGAAAGGAGAT 58.870 37.500 0.00 0.00 0.00 2.75
709 2658 6.292923 TGAACCACGAAAAAGAAAGGAGATA 58.707 36.000 0.00 0.00 0.00 1.98
710 2659 6.940298 TGAACCACGAAAAAGAAAGGAGATAT 59.060 34.615 0.00 0.00 0.00 1.63
711 2660 6.986904 ACCACGAAAAAGAAAGGAGATATC 57.013 37.500 0.00 0.00 0.00 1.63
738 3050 4.806342 TTTTCTTTAGAACTGACGCACC 57.194 40.909 0.00 0.00 33.13 5.01
739 3051 2.060326 TCTTTAGAACTGACGCACCG 57.940 50.000 0.00 0.00 0.00 4.94
740 3052 1.610038 TCTTTAGAACTGACGCACCGA 59.390 47.619 0.00 0.00 0.00 4.69
741 3053 1.986378 CTTTAGAACTGACGCACCGAG 59.014 52.381 0.00 0.00 0.00 4.63
742 3054 1.241165 TTAGAACTGACGCACCGAGA 58.759 50.000 0.00 0.00 0.00 4.04
743 3055 0.803117 TAGAACTGACGCACCGAGAG 59.197 55.000 0.00 0.00 0.00 3.20
746 3058 2.143594 AACTGACGCACCGAGAGTCC 62.144 60.000 8.64 0.00 45.25 3.85
747 3059 3.343788 CTGACGCACCGAGAGTCCC 62.344 68.421 8.64 0.00 45.25 4.46
748 3060 4.131088 GACGCACCGAGAGTCCCC 62.131 72.222 1.39 0.00 40.69 4.81
774 3086 2.125753 GACAGGCGGCTCAGACAG 60.126 66.667 9.32 0.00 0.00 3.51
783 3095 3.957260 CTCAGACAGCAACCACCG 58.043 61.111 0.00 0.00 0.00 4.94
784 3096 1.069765 CTCAGACAGCAACCACCGT 59.930 57.895 0.00 0.00 0.00 4.83
785 3097 0.946221 CTCAGACAGCAACCACCGTC 60.946 60.000 0.00 0.00 0.00 4.79
787 3099 0.603707 CAGACAGCAACCACCGTCAT 60.604 55.000 0.00 0.00 0.00 3.06
788 3100 0.603707 AGACAGCAACCACCGTCATG 60.604 55.000 0.00 0.00 0.00 3.07
789 3101 1.577328 GACAGCAACCACCGTCATGG 61.577 60.000 0.00 0.00 46.10 3.66
790 3102 1.302431 CAGCAACCACCGTCATGGA 60.302 57.895 4.73 0.00 43.02 3.41
791 3103 0.677731 CAGCAACCACCGTCATGGAT 60.678 55.000 4.73 0.00 43.02 3.41
792 3104 0.392998 AGCAACCACCGTCATGGATC 60.393 55.000 4.73 0.00 43.02 3.36
793 3105 0.676466 GCAACCACCGTCATGGATCA 60.676 55.000 4.73 0.00 43.02 2.92
794 3106 2.018644 GCAACCACCGTCATGGATCAT 61.019 52.381 4.73 0.00 43.02 2.45
795 3107 2.368439 CAACCACCGTCATGGATCATT 58.632 47.619 4.73 0.00 43.02 2.57
797 3109 4.136796 CAACCACCGTCATGGATCATTAT 58.863 43.478 4.73 0.00 43.02 1.28
798 3110 4.008074 ACCACCGTCATGGATCATTATC 57.992 45.455 4.73 0.00 43.02 1.75
799 3111 3.648067 ACCACCGTCATGGATCATTATCT 59.352 43.478 4.73 0.00 43.02 1.98
800 3112 3.999001 CCACCGTCATGGATCATTATCTG 59.001 47.826 0.00 0.00 43.02 2.90
801 3113 4.262592 CCACCGTCATGGATCATTATCTGA 60.263 45.833 0.00 0.00 43.02 3.27
811 3123 3.726557 TCATTATCTGATCCATGGCCC 57.273 47.619 6.96 1.14 0.00 5.80
812 3124 2.988148 TCATTATCTGATCCATGGCCCA 59.012 45.455 6.96 6.29 0.00 5.36
813 3125 3.009805 TCATTATCTGATCCATGGCCCAG 59.990 47.826 20.60 20.60 0.00 4.45
814 3126 2.421197 TATCTGATCCATGGCCCAGA 57.579 50.000 27.03 27.03 39.60 3.86
815 3127 1.756498 ATCTGATCCATGGCCCAGAT 58.244 50.000 28.34 28.34 40.41 2.90
816 3128 2.421197 TCTGATCCATGGCCCAGATA 57.579 50.000 23.51 9.84 31.45 1.98
817 3129 2.705148 TCTGATCCATGGCCCAGATAA 58.295 47.619 23.51 9.30 31.45 1.75
818 3130 3.055328 TCTGATCCATGGCCCAGATAAA 58.945 45.455 23.51 9.03 31.45 1.40
819 3131 3.462954 TCTGATCCATGGCCCAGATAAAA 59.537 43.478 23.51 8.75 31.45 1.52
820 3132 4.079269 TCTGATCCATGGCCCAGATAAAAA 60.079 41.667 23.51 8.21 31.45 1.94
838 3150 3.495434 AAAAACATACGACCTGGTCCA 57.505 42.857 20.68 9.58 0.00 4.02
839 3151 2.467566 AAACATACGACCTGGTCCAC 57.532 50.000 20.68 0.00 0.00 4.02
840 3152 0.245539 AACATACGACCTGGTCCACG 59.754 55.000 20.68 12.65 0.00 4.94
841 3153 1.141019 CATACGACCTGGTCCACGG 59.859 63.158 20.68 9.37 0.00 4.94
842 3154 1.304713 ATACGACCTGGTCCACGGT 60.305 57.895 20.68 14.54 35.90 4.83
843 3155 1.318158 ATACGACCTGGTCCACGGTC 61.318 60.000 20.68 21.68 44.88 4.79
844 3156 2.416107 TACGACCTGGTCCACGGTCT 62.416 60.000 25.54 18.70 45.88 3.85
845 3157 1.676635 CGACCTGGTCCACGGTCTA 60.677 63.158 25.54 0.00 45.88 2.59
846 3158 1.654954 CGACCTGGTCCACGGTCTAG 61.655 65.000 25.54 14.78 45.88 2.43
847 3159 1.946475 GACCTGGTCCACGGTCTAGC 61.946 65.000 23.19 7.02 44.90 3.42
848 3160 2.490217 CTGGTCCACGGTCTAGCG 59.510 66.667 0.00 0.00 0.00 4.26
849 3161 3.064987 CTGGTCCACGGTCTAGCGG 62.065 68.421 6.52 0.00 0.00 5.52
850 3162 3.834799 GGTCCACGGTCTAGCGGG 61.835 72.222 6.52 1.20 0.00 6.13
851 3163 3.834799 GTCCACGGTCTAGCGGGG 61.835 72.222 16.48 16.48 0.00 5.73
852 3164 4.051167 TCCACGGTCTAGCGGGGA 62.051 66.667 20.80 20.80 0.00 4.81
853 3165 3.072468 CCACGGTCTAGCGGGGAA 61.072 66.667 17.62 0.00 0.00 3.97
854 3166 2.494918 CACGGTCTAGCGGGGAAG 59.505 66.667 6.52 0.00 0.00 3.46
855 3167 3.459063 ACGGTCTAGCGGGGAAGC 61.459 66.667 6.52 0.00 37.41 3.86
863 3175 4.525949 GCGGGGAAGCTACGGTCC 62.526 72.222 0.00 0.00 0.00 4.46
864 3176 2.758737 CGGGGAAGCTACGGTCCT 60.759 66.667 2.26 0.00 34.10 3.85
865 3177 2.901042 GGGGAAGCTACGGTCCTG 59.099 66.667 2.26 0.00 34.10 3.86
866 3178 2.732619 GGGGAAGCTACGGTCCTGG 61.733 68.421 2.26 0.00 34.10 4.45
867 3179 1.988406 GGGAAGCTACGGTCCTGGT 60.988 63.158 2.26 0.00 34.10 4.00
868 3180 1.516423 GGAAGCTACGGTCCTGGTC 59.484 63.158 0.00 0.00 0.00 4.02
869 3181 1.516423 GAAGCTACGGTCCTGGTCC 59.484 63.158 0.00 0.00 0.00 4.46
870 3182 1.229082 AAGCTACGGTCCTGGTCCA 60.229 57.895 10.58 0.00 0.00 4.02
871 3183 1.542187 AAGCTACGGTCCTGGTCCAC 61.542 60.000 10.58 0.00 0.00 4.02
872 3184 2.882876 CTACGGTCCTGGTCCACG 59.117 66.667 10.58 5.80 0.00 4.94
873 3185 2.677524 TACGGTCCTGGTCCACGG 60.678 66.667 10.58 3.31 0.00 4.94
902 3214 4.547905 CTGGCGCGACGTCCGTAT 62.548 66.667 21.74 0.00 41.15 3.06
903 3215 4.118995 TGGCGCGACGTCCGTATT 62.119 61.111 21.74 0.00 41.15 1.89
904 3216 3.317795 GGCGCGACGTCCGTATTC 61.318 66.667 21.74 9.56 41.15 1.75
905 3217 3.665531 GCGCGACGTCCGTATTCG 61.666 66.667 21.74 12.21 41.15 3.34
906 3218 2.276868 CGCGACGTCCGTATTCGT 60.277 61.111 10.58 0.00 43.00 3.85
907 3219 2.553221 CGCGACGTCCGTATTCGTG 61.553 63.158 10.58 0.00 40.39 4.35
908 3220 2.219562 GCGACGTCCGTATTCGTGG 61.220 63.158 10.58 0.00 40.39 4.94
909 3221 1.584483 CGACGTCCGTATTCGTGGG 60.584 63.158 10.58 0.00 40.39 4.61
910 3222 1.508088 GACGTCCGTATTCGTGGGT 59.492 57.895 3.51 0.00 40.39 4.51
911 3223 0.109132 GACGTCCGTATTCGTGGGTT 60.109 55.000 3.51 0.00 40.39 4.11
912 3224 0.318120 ACGTCCGTATTCGTGGGTTT 59.682 50.000 0.00 0.00 38.85 3.27
913 3225 1.270252 ACGTCCGTATTCGTGGGTTTT 60.270 47.619 0.00 0.00 38.85 2.43
914 3226 1.391144 CGTCCGTATTCGTGGGTTTTC 59.609 52.381 0.00 0.00 35.01 2.29
915 3227 2.691927 GTCCGTATTCGTGGGTTTTCT 58.308 47.619 0.00 0.00 35.01 2.52
916 3228 2.669924 GTCCGTATTCGTGGGTTTTCTC 59.330 50.000 0.00 0.00 35.01 2.87
917 3229 2.004733 CCGTATTCGTGGGTTTTCTCC 58.995 52.381 0.00 0.00 35.01 3.71
918 3230 2.613474 CCGTATTCGTGGGTTTTCTCCA 60.613 50.000 0.00 0.00 35.01 3.86
919 3231 3.267483 CGTATTCGTGGGTTTTCTCCAT 58.733 45.455 0.00 0.00 36.58 3.41
920 3232 3.687698 CGTATTCGTGGGTTTTCTCCATT 59.312 43.478 0.00 0.00 36.58 3.16
921 3233 4.155280 CGTATTCGTGGGTTTTCTCCATTT 59.845 41.667 0.00 0.00 36.58 2.32
922 3234 5.352016 CGTATTCGTGGGTTTTCTCCATTTA 59.648 40.000 0.00 0.00 36.58 1.40
923 3235 5.638596 ATTCGTGGGTTTTCTCCATTTAC 57.361 39.130 0.00 0.00 36.58 2.01
924 3236 3.414269 TCGTGGGTTTTCTCCATTTACC 58.586 45.455 0.00 0.00 36.58 2.85
925 3237 2.160813 CGTGGGTTTTCTCCATTTACCG 59.839 50.000 0.00 0.00 36.58 4.02
926 3238 3.414269 GTGGGTTTTCTCCATTTACCGA 58.586 45.455 0.00 0.00 36.58 4.69
927 3239 3.822167 GTGGGTTTTCTCCATTTACCGAA 59.178 43.478 0.00 0.00 36.58 4.30
928 3240 4.076394 TGGGTTTTCTCCATTTACCGAAG 58.924 43.478 0.00 0.00 0.00 3.79
929 3241 3.119602 GGGTTTTCTCCATTTACCGAAGC 60.120 47.826 0.00 0.00 0.00 3.86
930 3242 3.756963 GGTTTTCTCCATTTACCGAAGCT 59.243 43.478 0.00 0.00 0.00 3.74
931 3243 4.142665 GGTTTTCTCCATTTACCGAAGCTC 60.143 45.833 0.00 0.00 0.00 4.09
932 3244 2.579207 TCTCCATTTACCGAAGCTCG 57.421 50.000 0.00 0.00 40.07 5.03
933 3245 2.097036 TCTCCATTTACCGAAGCTCGA 58.903 47.619 7.07 0.00 43.74 4.04
934 3246 2.159282 TCTCCATTTACCGAAGCTCGAC 60.159 50.000 7.07 0.00 43.74 4.20
935 3247 1.134907 TCCATTTACCGAAGCTCGACC 60.135 52.381 7.07 0.00 43.74 4.79
936 3248 1.287425 CATTTACCGAAGCTCGACCC 58.713 55.000 7.07 0.00 43.74 4.46
937 3249 1.134788 CATTTACCGAAGCTCGACCCT 60.135 52.381 7.07 0.00 43.74 4.34
938 3250 0.245539 TTTACCGAAGCTCGACCCTG 59.754 55.000 7.07 0.00 43.74 4.45
939 3251 0.609957 TTACCGAAGCTCGACCCTGA 60.610 55.000 7.07 0.00 43.74 3.86
940 3252 1.310933 TACCGAAGCTCGACCCTGAC 61.311 60.000 7.07 0.00 43.74 3.51
941 3253 2.636412 CCGAAGCTCGACCCTGACA 61.636 63.158 7.07 0.00 43.74 3.58
942 3254 1.444553 CGAAGCTCGACCCTGACAC 60.445 63.158 0.00 0.00 43.74 3.67
943 3255 1.444553 GAAGCTCGACCCTGACACG 60.445 63.158 0.00 0.00 0.00 4.49
944 3256 3.575351 AAGCTCGACCCTGACACGC 62.575 63.158 0.00 0.00 0.00 5.34
946 3258 3.680786 CTCGACCCTGACACGCCA 61.681 66.667 0.00 0.00 0.00 5.69
947 3259 3.220999 CTCGACCCTGACACGCCAA 62.221 63.158 0.00 0.00 0.00 4.52
948 3260 2.280524 CGACCCTGACACGCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
949 3261 1.671054 CGACCCTGACACGCCAAAT 60.671 57.895 0.00 0.00 0.00 2.32
950 3262 1.635663 CGACCCTGACACGCCAAATC 61.636 60.000 0.00 0.00 0.00 2.17
951 3263 1.635663 GACCCTGACACGCCAAATCG 61.636 60.000 0.00 0.00 0.00 3.34
952 3264 2.480555 CCTGACACGCCAAATCGC 59.519 61.111 0.00 0.00 0.00 4.58
953 3265 2.480555 CTGACACGCCAAATCGCC 59.519 61.111 0.00 0.00 0.00 5.54
954 3266 3.367051 CTGACACGCCAAATCGCCG 62.367 63.158 0.00 0.00 0.00 6.46
955 3267 4.811761 GACACGCCAAATCGCCGC 62.812 66.667 0.00 0.00 0.00 6.53
959 3271 4.817063 CGCCAAATCGCCGCACTG 62.817 66.667 0.00 0.00 0.00 3.66
1061 3392 1.678970 GCCCGCATTTTCCTCACCT 60.679 57.895 0.00 0.00 0.00 4.00
1079 3410 1.273606 CCTCCAGTATGTATCCGCCTG 59.726 57.143 0.00 0.00 0.00 4.85
1080 3411 1.273606 CTCCAGTATGTATCCGCCTGG 59.726 57.143 0.00 0.00 43.26 4.45
1135 3477 0.792640 GCACAATGTCCGACACTGAG 59.207 55.000 16.51 9.76 28.86 3.35
1191 3534 2.173569 ACCCTAAGCCCAGATGTGATTC 59.826 50.000 0.00 0.00 0.00 2.52
1193 3536 2.103094 CCTAAGCCCAGATGTGATTCGA 59.897 50.000 0.00 0.00 0.00 3.71
1227 3570 5.243507 TCTTGTGCAGATTTCAGGCAATTTA 59.756 36.000 0.00 0.00 39.57 1.40
1230 3573 7.167924 TGTGCAGATTTCAGGCAATTTATTA 57.832 32.000 0.00 0.00 39.57 0.98
1231 3574 7.784037 TGTGCAGATTTCAGGCAATTTATTAT 58.216 30.769 0.00 0.00 39.57 1.28
1263 3620 6.889198 AGTATGCAGTTAACTCATACACCAT 58.111 36.000 32.15 21.48 42.85 3.55
1276 3634 8.237811 ACTCATACACCATTTTTGGGATATTC 57.762 34.615 0.00 0.00 0.00 1.75
1291 3649 6.129179 TGGGATATTCTCAAGGGTTCAATTC 58.871 40.000 0.00 0.00 0.00 2.17
1359 3718 9.613428 TTCATAGTGGAACCTGTTATTCATTAG 57.387 33.333 0.00 0.00 37.80 1.73
1484 3855 9.619316 CCTCTTACTATATCTTCTTGTGAATCG 57.381 37.037 0.00 0.00 0.00 3.34
1568 3999 0.892755 TGTGTACTCCTACCTTGGCG 59.107 55.000 0.00 0.00 0.00 5.69
1594 4025 3.502211 GCATAGCGGCACTTGGTATAAAT 59.498 43.478 1.45 0.00 0.00 1.40
1716 4153 0.924090 GATGACGCGGATTCACTCAC 59.076 55.000 12.47 0.00 0.00 3.51
1753 4190 5.192327 ACTTCCTTGTCAAATTCAGCAAG 57.808 39.130 8.15 8.15 38.33 4.01
2147 4614 4.814294 CACCTACCGGCCGAGCAC 62.814 72.222 30.73 0.00 0.00 4.40
2152 4619 2.337749 CTACCGGCCGAGCACAGTAG 62.338 65.000 30.73 23.07 0.00 2.57
2156 4623 1.592223 GGCCGAGCACAGTAGAAGT 59.408 57.895 0.00 0.00 0.00 3.01
2160 4627 1.618861 CGAGCACAGTAGAAGTTCGG 58.381 55.000 0.00 0.00 0.00 4.30
2165 4632 1.455786 CACAGTAGAAGTTCGGTTGCG 59.544 52.381 0.00 0.00 0.00 4.85
2326 4831 5.179742 TCGAGTCTGTCTTAACTCTTGAGTC 59.820 44.000 3.58 0.00 39.80 3.36
2667 5191 9.070149 GTTTCAAATGAAGCTGAAGATTATGAC 57.930 33.333 3.13 0.00 35.21 3.06
2717 5249 4.985538 TGTCCTTGAGTATTTTCAGGCTT 58.014 39.130 0.00 0.00 0.00 4.35
2753 5285 3.181466 GCAAAGTTGTTTGGATTCAGGGT 60.181 43.478 0.38 0.00 42.99 4.34
3201 5853 4.689612 TCTTCAGGAGCTACAAACAACT 57.310 40.909 0.00 0.00 0.00 3.16
3406 6063 1.694133 CCTCCTGGGACATCCTCAGC 61.694 65.000 9.66 0.00 38.20 4.26
3409 6066 1.270414 CCTGGGACATCCTCAGCAGT 61.270 60.000 9.66 0.00 38.20 4.40
3455 6112 3.788227 ACACCAATGCTACCTCAAAGA 57.212 42.857 0.00 0.00 0.00 2.52
3564 6225 3.521126 AGCCTCTTCCTCTTAAATGCTGA 59.479 43.478 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.126879 GGAGTAGATAAAAAGTTAGGGAGGGAA 59.873 40.741 0.00 0.00 0.00 3.97
41 42 6.614496 GGAGTAGATAAAAAGTTAGGGAGGGA 59.386 42.308 0.00 0.00 0.00 4.20
52 53 7.201679 CCTTGCATGAGTGGAGTAGATAAAAAG 60.202 40.741 0.00 0.00 0.00 2.27
61 63 0.911769 CCCCTTGCATGAGTGGAGTA 59.088 55.000 0.00 0.00 0.00 2.59
63 65 0.107312 CTCCCCTTGCATGAGTGGAG 60.107 60.000 14.12 14.12 34.02 3.86
69 71 1.361204 TTCACTCTCCCCTTGCATGA 58.639 50.000 0.00 0.00 0.00 3.07
76 78 2.309755 TGATTTGCATTCACTCTCCCCT 59.690 45.455 0.00 0.00 0.00 4.79
78 80 4.789012 TTTGATTTGCATTCACTCTCCC 57.211 40.909 0.00 0.00 0.00 4.30
100 103 7.559590 CAAATTGGGTTGGACAATAAAAACA 57.440 32.000 0.00 0.00 37.55 2.83
153 156 5.351465 GCACTAGCTAAGCTTGTAAACATGA 59.649 40.000 9.86 0.00 42.01 3.07
175 178 3.993614 GATGGTGGACGGCATGGCA 62.994 63.158 20.37 0.00 0.00 4.92
193 2142 2.829914 CATGTGGGCCCATCACCG 60.830 66.667 31.45 17.49 34.46 4.94
203 2152 2.757099 GAAGCAGGGGCATGTGGG 60.757 66.667 0.00 0.00 44.61 4.61
218 2167 1.902508 CTGGAGCAACAGGTAGAGGAA 59.097 52.381 0.10 0.00 34.84 3.36
221 2170 1.066573 CCACTGGAGCAACAGGTAGAG 60.067 57.143 11.63 0.00 42.75 2.43
224 2173 0.396435 CACCACTGGAGCAACAGGTA 59.604 55.000 0.71 0.00 42.75 3.08
231 2180 2.528818 CCCCTTCACCACTGGAGCA 61.529 63.158 0.71 0.00 0.00 4.26
232 2181 2.352805 CCCCTTCACCACTGGAGC 59.647 66.667 0.71 0.00 0.00 4.70
251 2200 2.359975 CGAGGCACTTGGTTCCCC 60.360 66.667 0.00 0.00 41.55 4.81
266 2215 4.043059 AGCATATCTAGGAGTAGGGAACGA 59.957 45.833 0.00 0.00 0.00 3.85
270 2219 5.044030 CCCTAAGCATATCTAGGAGTAGGGA 60.044 48.000 6.59 0.00 46.48 4.20
276 2225 7.015682 TCAGAAAACCCTAAGCATATCTAGGAG 59.984 40.741 4.31 0.00 31.53 3.69
293 2242 1.797025 AGCGCTACTGTCAGAAAACC 58.203 50.000 8.99 0.00 0.00 3.27
301 2250 4.421952 GCCCTAAGCGCTACTGTC 57.578 61.111 12.05 0.00 0.00 3.51
343 2292 5.422650 GGTCTGGTGGTCTTCTATAGAAAGT 59.577 44.000 15.85 0.00 33.81 2.66
345 2294 4.715297 GGGTCTGGTGGTCTTCTATAGAAA 59.285 45.833 15.85 5.20 33.81 2.52
364 2313 5.063312 CACACTGAACAAAAACATTTGGGTC 59.937 40.000 6.29 4.03 36.30 4.46
398 2347 4.097418 ACACACTTCTATAGCCTGGTCTT 58.903 43.478 0.00 0.00 0.00 3.01
416 2365 4.335400 TGTGAGTAAGCAAGATGACACA 57.665 40.909 0.00 0.00 35.24 3.72
421 2370 4.142534 CCCACAATGTGAGTAAGCAAGATG 60.143 45.833 15.91 0.00 35.23 2.90
422 2371 4.012374 CCCACAATGTGAGTAAGCAAGAT 58.988 43.478 15.91 0.00 35.23 2.40
431 2380 0.555769 ACAACCCCCACAATGTGAGT 59.444 50.000 15.91 6.41 35.23 3.41
460 2409 5.296780 ACATCACATTTCTCACAACGACTTT 59.703 36.000 0.00 0.00 0.00 2.66
462 2411 4.380531 ACATCACATTTCTCACAACGACT 58.619 39.130 0.00 0.00 0.00 4.18
474 2423 7.336931 GGGAGTACACAATAAGACATCACATTT 59.663 37.037 0.00 0.00 0.00 2.32
488 2437 1.203994 CGAACGGAGGGAGTACACAAT 59.796 52.381 0.00 0.00 0.00 2.71
492 2441 0.251297 TTCCGAACGGAGGGAGTACA 60.251 55.000 15.34 0.00 46.06 2.90
493 2442 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
494 2443 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
495 2444 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
496 2445 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
497 2446 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
498 2447 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
499 2448 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
500 2449 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
501 2450 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
502 2451 5.345702 TCTATGACAAGTAATTCCGAACGG 58.654 41.667 6.94 6.94 0.00 4.44
503 2452 6.880822 TTCTATGACAAGTAATTCCGAACG 57.119 37.500 0.00 0.00 0.00 3.95
504 2453 8.122952 CCATTTCTATGACAAGTAATTCCGAAC 58.877 37.037 0.00 0.00 33.37 3.95
505 2454 8.044309 TCCATTTCTATGACAAGTAATTCCGAA 58.956 33.333 0.00 0.00 33.37 4.30
506 2455 7.561251 TCCATTTCTATGACAAGTAATTCCGA 58.439 34.615 0.00 0.00 33.37 4.55
507 2456 7.786178 TCCATTTCTATGACAAGTAATTCCG 57.214 36.000 0.00 0.00 33.37 4.30
508 2457 9.125026 ACATCCATTTCTATGACAAGTAATTCC 57.875 33.333 0.00 0.00 33.37 3.01
517 2466 8.515414 CGTCTAGATACATCCATTTCTATGACA 58.485 37.037 0.00 0.00 33.37 3.58
518 2467 8.516234 ACGTCTAGATACATCCATTTCTATGAC 58.484 37.037 0.00 0.00 33.37 3.06
519 2468 8.637196 ACGTCTAGATACATCCATTTCTATGA 57.363 34.615 0.00 0.00 33.37 2.15
546 2495 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
547 2496 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
548 2497 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
549 2498 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
550 2499 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
551 2500 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
552 2501 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
553 2502 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
554 2503 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
555 2504 6.724893 TTGTCTCGGAAATGGATGTATCTA 57.275 37.500 0.00 0.00 0.00 1.98
556 2505 5.614324 TTGTCTCGGAAATGGATGTATCT 57.386 39.130 0.00 0.00 0.00 1.98
557 2506 6.867662 ATTTGTCTCGGAAATGGATGTATC 57.132 37.500 0.00 0.00 0.00 2.24
558 2507 8.924511 ATTATTTGTCTCGGAAATGGATGTAT 57.075 30.769 0.00 0.00 0.00 2.29
559 2508 8.746052 AATTATTTGTCTCGGAAATGGATGTA 57.254 30.769 0.00 0.00 0.00 2.29
560 2509 7.201821 GGAATTATTTGTCTCGGAAATGGATGT 60.202 37.037 0.00 0.00 0.00 3.06
561 2510 7.141363 GGAATTATTTGTCTCGGAAATGGATG 58.859 38.462 0.00 0.00 0.00 3.51
562 2511 6.017109 CGGAATTATTTGTCTCGGAAATGGAT 60.017 38.462 0.00 0.00 0.00 3.41
563 2512 5.295787 CGGAATTATTTGTCTCGGAAATGGA 59.704 40.000 0.00 0.00 0.00 3.41
564 2513 5.295787 TCGGAATTATTTGTCTCGGAAATGG 59.704 40.000 0.00 0.00 0.00 3.16
565 2514 6.358118 TCGGAATTATTTGTCTCGGAAATG 57.642 37.500 0.00 0.00 0.00 2.32
566 2515 6.456449 CGTTCGGAATTATTTGTCTCGGAAAT 60.456 38.462 0.00 0.00 31.52 2.17
567 2516 5.163933 CGTTCGGAATTATTTGTCTCGGAAA 60.164 40.000 0.00 0.00 31.52 3.13
568 2517 4.327898 CGTTCGGAATTATTTGTCTCGGAA 59.672 41.667 0.00 0.00 0.00 4.30
569 2518 3.861113 CGTTCGGAATTATTTGTCTCGGA 59.139 43.478 0.00 0.00 0.00 4.55
570 2519 3.000925 CCGTTCGGAATTATTTGTCTCGG 59.999 47.826 5.19 0.00 0.00 4.63
571 2520 3.861113 TCCGTTCGGAATTATTTGTCTCG 59.139 43.478 11.66 0.00 0.00 4.04
572 2521 5.107133 TCTCCGTTCGGAATTATTTGTCTC 58.893 41.667 14.79 0.00 33.41 3.36
573 2522 5.080969 TCTCCGTTCGGAATTATTTGTCT 57.919 39.130 14.79 0.00 33.41 3.41
574 2523 5.789710 TTCTCCGTTCGGAATTATTTGTC 57.210 39.130 14.79 0.00 33.41 3.18
575 2524 5.704053 ACTTTCTCCGTTCGGAATTATTTGT 59.296 36.000 14.79 5.53 33.41 2.83
576 2525 6.178239 ACTTTCTCCGTTCGGAATTATTTG 57.822 37.500 14.79 2.23 33.41 2.32
577 2526 9.603921 TTATACTTTCTCCGTTCGGAATTATTT 57.396 29.630 14.79 1.75 33.41 1.40
578 2527 9.257651 CTTATACTTTCTCCGTTCGGAATTATT 57.742 33.333 14.79 3.15 33.41 1.40
579 2528 8.419442 ACTTATACTTTCTCCGTTCGGAATTAT 58.581 33.333 14.79 7.27 33.41 1.28
580 2529 7.775120 ACTTATACTTTCTCCGTTCGGAATTA 58.225 34.615 14.79 1.55 33.41 1.40
581 2530 6.637657 ACTTATACTTTCTCCGTTCGGAATT 58.362 36.000 14.79 0.00 33.41 2.17
582 2531 6.127535 TGACTTATACTTTCTCCGTTCGGAAT 60.128 38.462 14.79 7.15 33.41 3.01
583 2532 5.183713 TGACTTATACTTTCTCCGTTCGGAA 59.816 40.000 14.79 4.13 33.41 4.30
584 2533 4.701651 TGACTTATACTTTCTCCGTTCGGA 59.298 41.667 13.34 13.34 0.00 4.55
585 2534 4.990257 TGACTTATACTTTCTCCGTTCGG 58.010 43.478 4.74 4.74 0.00 4.30
586 2535 6.263344 TGATGACTTATACTTTCTCCGTTCG 58.737 40.000 0.00 0.00 0.00 3.95
587 2536 7.760340 ACTTGATGACTTATACTTTCTCCGTTC 59.240 37.037 0.00 0.00 0.00 3.95
588 2537 7.545965 CACTTGATGACTTATACTTTCTCCGTT 59.454 37.037 0.00 0.00 0.00 4.44
589 2538 7.036220 CACTTGATGACTTATACTTTCTCCGT 58.964 38.462 0.00 0.00 0.00 4.69
590 2539 7.036220 ACACTTGATGACTTATACTTTCTCCG 58.964 38.462 0.00 0.00 0.00 4.63
591 2540 8.779354 AACACTTGATGACTTATACTTTCTCC 57.221 34.615 0.00 0.00 0.00 3.71
593 2542 9.355215 CGTAACACTTGATGACTTATACTTTCT 57.645 33.333 0.00 0.00 0.00 2.52
594 2543 9.136952 ACGTAACACTTGATGACTTATACTTTC 57.863 33.333 0.00 0.00 0.00 2.62
597 2546 9.947669 GATACGTAACACTTGATGACTTATACT 57.052 33.333 0.00 0.00 0.00 2.12
601 2550 8.277490 AGAGATACGTAACACTTGATGACTTA 57.723 34.615 0.00 0.00 0.00 2.24
618 2567 2.342651 CGCTGTTGTTGTGAGAGATACG 59.657 50.000 0.00 0.00 0.00 3.06
619 2568 3.575630 TCGCTGTTGTTGTGAGAGATAC 58.424 45.455 0.00 0.00 0.00 2.24
621 2570 2.820059 TCGCTGTTGTTGTGAGAGAT 57.180 45.000 0.00 0.00 0.00 2.75
626 2575 0.746204 TGCCTTCGCTGTTGTTGTGA 60.746 50.000 0.00 0.00 35.36 3.58
629 2578 0.311790 ACATGCCTTCGCTGTTGTTG 59.688 50.000 0.00 0.00 35.36 3.33
630 2579 0.311790 CACATGCCTTCGCTGTTGTT 59.688 50.000 0.00 0.00 35.36 2.83
631 2580 0.819259 ACACATGCCTTCGCTGTTGT 60.819 50.000 0.00 0.00 35.36 3.32
632 2581 0.386352 CACACATGCCTTCGCTGTTG 60.386 55.000 0.00 0.00 35.36 3.33
633 2582 1.518056 CCACACATGCCTTCGCTGTT 61.518 55.000 0.00 0.00 35.36 3.16
634 2583 1.968017 CCACACATGCCTTCGCTGT 60.968 57.895 0.00 0.00 35.36 4.40
635 2584 2.693762 CCCACACATGCCTTCGCTG 61.694 63.158 0.00 0.00 35.36 5.18
638 2587 1.378882 CCATCCCACACATGCCTTCG 61.379 60.000 0.00 0.00 0.00 3.79
639 2588 1.669999 GCCATCCCACACATGCCTTC 61.670 60.000 0.00 0.00 0.00 3.46
640 2589 1.683365 GCCATCCCACACATGCCTT 60.683 57.895 0.00 0.00 0.00 4.35
641 2590 2.043652 GCCATCCCACACATGCCT 60.044 61.111 0.00 0.00 0.00 4.75
642 2591 3.149648 GGCCATCCCACACATGCC 61.150 66.667 0.00 0.00 0.00 4.40
643 2592 1.543065 TTTGGCCATCCCACACATGC 61.543 55.000 6.09 0.00 45.34 4.06
644 2593 0.975135 TTTTGGCCATCCCACACATG 59.025 50.000 6.09 0.00 45.34 3.21
645 2594 1.727062 TTTTTGGCCATCCCACACAT 58.273 45.000 6.09 0.00 45.34 3.21
646 2595 1.622811 GATTTTTGGCCATCCCACACA 59.377 47.619 6.09 0.00 45.34 3.72
647 2596 1.404047 CGATTTTTGGCCATCCCACAC 60.404 52.381 6.09 0.00 45.34 3.82
648 2597 0.894141 CGATTTTTGGCCATCCCACA 59.106 50.000 6.09 0.00 45.34 4.17
651 2600 0.100503 CGTCGATTTTTGGCCATCCC 59.899 55.000 6.09 0.00 0.00 3.85
664 2613 2.431954 TTTAGAGGACCCTCGTCGAT 57.568 50.000 10.17 0.00 46.90 3.59
666 2615 2.426024 TCATTTTAGAGGACCCTCGTCG 59.574 50.000 10.17 0.00 46.90 5.12
667 2616 4.182339 GTTCATTTTAGAGGACCCTCGTC 58.818 47.826 10.17 0.00 46.90 4.20
668 2617 3.055312 GGTTCATTTTAGAGGACCCTCGT 60.055 47.826 10.17 2.59 46.90 4.18
669 2618 3.055385 TGGTTCATTTTAGAGGACCCTCG 60.055 47.826 10.17 0.00 46.90 4.63
671 2620 3.307480 CGTGGTTCATTTTAGAGGACCCT 60.307 47.826 0.00 0.00 0.00 4.34
672 2621 3.007635 CGTGGTTCATTTTAGAGGACCC 58.992 50.000 0.00 0.00 0.00 4.46
674 2623 5.934935 TTTCGTGGTTCATTTTAGAGGAC 57.065 39.130 0.00 0.00 0.00 3.85
675 2624 6.768861 TCTTTTTCGTGGTTCATTTTAGAGGA 59.231 34.615 0.00 0.00 0.00 3.71
676 2625 6.966021 TCTTTTTCGTGGTTCATTTTAGAGG 58.034 36.000 0.00 0.00 0.00 3.69
677 2626 8.850454 TTTCTTTTTCGTGGTTCATTTTAGAG 57.150 30.769 0.00 0.00 0.00 2.43
678 2627 7.918562 CCTTTCTTTTTCGTGGTTCATTTTAGA 59.081 33.333 0.00 0.00 0.00 2.10
679 2628 7.918562 TCCTTTCTTTTTCGTGGTTCATTTTAG 59.081 33.333 0.00 0.00 0.00 1.85
681 2630 6.635755 TCCTTTCTTTTTCGTGGTTCATTTT 58.364 32.000 0.00 0.00 0.00 1.82
682 2631 6.096282 TCTCCTTTCTTTTTCGTGGTTCATTT 59.904 34.615 0.00 0.00 0.00 2.32
683 2632 5.592688 TCTCCTTTCTTTTTCGTGGTTCATT 59.407 36.000 0.00 0.00 0.00 2.57
684 2633 5.130350 TCTCCTTTCTTTTTCGTGGTTCAT 58.870 37.500 0.00 0.00 0.00 2.57
685 2634 4.519213 TCTCCTTTCTTTTTCGTGGTTCA 58.481 39.130 0.00 0.00 0.00 3.18
686 2635 5.690997 ATCTCCTTTCTTTTTCGTGGTTC 57.309 39.130 0.00 0.00 0.00 3.62
687 2636 7.168905 AGATATCTCCTTTCTTTTTCGTGGTT 58.831 34.615 0.00 0.00 0.00 3.67
688 2637 6.712276 AGATATCTCCTTTCTTTTTCGTGGT 58.288 36.000 0.00 0.00 0.00 4.16
722 3034 1.610038 TCTCGGTGCGTCAGTTCTAAA 59.390 47.619 0.00 0.00 0.00 1.85
723 3035 1.199327 CTCTCGGTGCGTCAGTTCTAA 59.801 52.381 0.00 0.00 0.00 2.10
725 3037 1.173444 ACTCTCGGTGCGTCAGTTCT 61.173 55.000 0.00 0.00 0.00 3.01
727 3039 1.286260 GACTCTCGGTGCGTCAGTT 59.714 57.895 0.00 0.00 0.00 3.16
728 3040 2.627737 GGACTCTCGGTGCGTCAGT 61.628 63.158 3.06 0.00 0.00 3.41
729 3041 2.179517 GGACTCTCGGTGCGTCAG 59.820 66.667 3.06 0.00 0.00 3.51
756 3068 3.978723 CTGTCTGAGCCGCCTGTCG 62.979 68.421 0.00 0.00 38.08 4.35
757 3069 2.125753 CTGTCTGAGCCGCCTGTC 60.126 66.667 0.00 0.00 0.00 3.51
758 3070 4.385405 GCTGTCTGAGCCGCCTGT 62.385 66.667 0.00 0.00 42.54 4.00
766 3078 0.946221 GACGGTGGTTGCTGTCTGAG 60.946 60.000 0.00 0.00 40.58 3.35
767 3079 1.069090 GACGGTGGTTGCTGTCTGA 59.931 57.895 0.00 0.00 40.58 3.27
768 3080 0.603707 ATGACGGTGGTTGCTGTCTG 60.604 55.000 6.60 0.00 43.29 3.51
769 3081 0.603707 CATGACGGTGGTTGCTGTCT 60.604 55.000 6.60 0.00 43.29 3.41
771 3083 1.600636 CCATGACGGTGGTTGCTGT 60.601 57.895 0.00 0.00 34.46 4.40
774 3086 0.676466 TGATCCATGACGGTGGTTGC 60.676 55.000 0.00 0.00 40.27 4.17
776 3088 2.806945 AATGATCCATGACGGTGGTT 57.193 45.000 0.00 0.00 40.27 3.67
777 3089 3.648067 AGATAATGATCCATGACGGTGGT 59.352 43.478 0.00 0.00 40.27 4.16
778 3090 3.999001 CAGATAATGATCCATGACGGTGG 59.001 47.826 0.00 0.00 40.76 4.61
780 3092 5.752036 ATCAGATAATGATCCATGACGGT 57.248 39.130 0.00 0.00 46.01 4.83
791 3103 2.988148 TGGGCCATGGATCAGATAATGA 59.012 45.455 18.40 0.00 43.70 2.57
792 3104 3.009805 TCTGGGCCATGGATCAGATAATG 59.990 47.826 24.59 7.77 32.10 1.90
793 3105 3.262842 TCTGGGCCATGGATCAGATAAT 58.737 45.455 24.59 0.00 32.10 1.28
794 3106 2.705148 TCTGGGCCATGGATCAGATAA 58.295 47.619 24.59 10.41 32.10 1.75
795 3107 2.421197 TCTGGGCCATGGATCAGATA 57.579 50.000 24.59 10.96 32.10 1.98
797 3109 2.421197 TATCTGGGCCATGGATCAGA 57.579 50.000 28.06 28.06 40.04 3.27
798 3110 3.513909 TTTATCTGGGCCATGGATCAG 57.486 47.619 18.40 20.54 0.00 2.90
799 3111 3.969466 TTTTATCTGGGCCATGGATCA 57.031 42.857 18.40 11.58 0.00 2.92
818 3130 3.143728 GTGGACCAGGTCGTATGTTTTT 58.856 45.455 13.80 0.00 32.65 1.94
819 3131 2.774687 GTGGACCAGGTCGTATGTTTT 58.225 47.619 13.80 0.00 32.65 2.43
820 3132 1.337447 CGTGGACCAGGTCGTATGTTT 60.337 52.381 13.80 0.00 32.65 2.83
821 3133 0.245539 CGTGGACCAGGTCGTATGTT 59.754 55.000 13.80 0.00 32.65 2.71
822 3134 1.601419 CCGTGGACCAGGTCGTATGT 61.601 60.000 13.80 0.00 32.65 2.29
823 3135 1.141019 CCGTGGACCAGGTCGTATG 59.859 63.158 13.80 10.10 32.65 2.39
824 3136 1.304713 ACCGTGGACCAGGTCGTAT 60.305 57.895 13.80 0.00 35.50 3.06
825 3137 1.973281 GACCGTGGACCAGGTCGTA 60.973 63.158 20.52 2.19 46.08 3.43
826 3138 3.300765 GACCGTGGACCAGGTCGT 61.301 66.667 20.52 5.53 46.08 4.34
829 3141 1.982938 GCTAGACCGTGGACCAGGT 60.983 63.158 12.99 13.30 44.64 4.00
830 3142 2.893398 GCTAGACCGTGGACCAGG 59.107 66.667 7.23 7.23 0.00 4.45
831 3143 2.490217 CGCTAGACCGTGGACCAG 59.510 66.667 0.00 0.00 0.00 4.00
832 3144 3.066190 CCGCTAGACCGTGGACCA 61.066 66.667 0.00 0.00 36.68 4.02
833 3145 3.834799 CCCGCTAGACCGTGGACC 61.835 72.222 0.00 0.00 36.68 4.46
834 3146 3.834799 CCCCGCTAGACCGTGGAC 61.835 72.222 0.00 0.00 36.68 4.02
835 3147 3.588817 TTCCCCGCTAGACCGTGGA 62.589 63.158 0.00 0.00 36.68 4.02
836 3148 3.072468 TTCCCCGCTAGACCGTGG 61.072 66.667 0.00 0.00 0.00 4.94
837 3149 2.494918 CTTCCCCGCTAGACCGTG 59.505 66.667 0.00 0.00 0.00 4.94
838 3150 2.563013 TAGCTTCCCCGCTAGACCGT 62.563 60.000 0.00 0.00 41.30 4.83
839 3151 1.826921 TAGCTTCCCCGCTAGACCG 60.827 63.158 0.00 0.00 41.30 4.79
840 3152 1.740905 GTAGCTTCCCCGCTAGACC 59.259 63.158 0.00 0.00 42.69 3.85
841 3153 1.359475 CGTAGCTTCCCCGCTAGAC 59.641 63.158 0.00 0.00 42.69 2.59
842 3154 1.826921 CCGTAGCTTCCCCGCTAGA 60.827 63.158 0.00 0.00 42.69 2.43
843 3155 2.073037 GACCGTAGCTTCCCCGCTAG 62.073 65.000 0.00 0.00 42.69 3.42
844 3156 2.043652 ACCGTAGCTTCCCCGCTA 60.044 61.111 0.00 0.00 41.30 4.26
845 3157 3.459063 GACCGTAGCTTCCCCGCT 61.459 66.667 0.00 0.00 43.83 5.52
846 3158 4.525949 GGACCGTAGCTTCCCCGC 62.526 72.222 0.00 0.00 0.00 6.13
847 3159 2.758737 AGGACCGTAGCTTCCCCG 60.759 66.667 0.00 0.00 31.51 5.73
848 3160 2.732619 CCAGGACCGTAGCTTCCCC 61.733 68.421 0.00 0.00 31.51 4.81
849 3161 1.957765 GACCAGGACCGTAGCTTCCC 61.958 65.000 0.00 0.00 31.51 3.97
850 3162 1.516423 GACCAGGACCGTAGCTTCC 59.484 63.158 0.00 0.00 0.00 3.46
851 3163 1.255667 TGGACCAGGACCGTAGCTTC 61.256 60.000 3.27 0.00 0.00 3.86
852 3164 1.229082 TGGACCAGGACCGTAGCTT 60.229 57.895 3.27 0.00 0.00 3.74
853 3165 1.982938 GTGGACCAGGACCGTAGCT 60.983 63.158 3.27 0.00 0.00 3.32
854 3166 2.577593 GTGGACCAGGACCGTAGC 59.422 66.667 3.27 0.00 0.00 3.58
855 3167 2.707849 CCGTGGACCAGGACCGTAG 61.708 68.421 15.84 0.00 0.00 3.51
856 3168 2.677524 CCGTGGACCAGGACCGTA 60.678 66.667 15.84 0.00 0.00 4.02
885 3197 4.547905 ATACGGACGTCGCGCCAG 62.548 66.667 21.23 0.00 43.89 4.85
886 3198 4.118995 AATACGGACGTCGCGCCA 62.119 61.111 21.23 12.72 43.89 5.69
887 3199 3.317795 GAATACGGACGTCGCGCC 61.318 66.667 21.23 3.85 43.89 6.53
888 3200 3.665531 CGAATACGGACGTCGCGC 61.666 66.667 21.23 0.00 43.89 6.86
889 3201 2.276868 ACGAATACGGACGTCGCG 60.277 61.111 20.16 20.16 44.46 5.87
890 3202 2.219562 CCACGAATACGGACGTCGC 61.220 63.158 9.92 1.55 44.46 5.19
891 3203 1.584483 CCCACGAATACGGACGTCG 60.584 63.158 9.92 7.64 44.46 5.12
892 3204 0.109132 AACCCACGAATACGGACGTC 60.109 55.000 7.13 7.13 44.46 4.34
893 3205 0.318120 AAACCCACGAATACGGACGT 59.682 50.000 1.98 1.98 44.46 4.34
894 3206 1.391144 GAAAACCCACGAATACGGACG 59.609 52.381 0.00 0.00 44.46 4.79
895 3207 2.669924 GAGAAAACCCACGAATACGGAC 59.330 50.000 0.00 0.00 44.46 4.79
896 3208 2.354003 GGAGAAAACCCACGAATACGGA 60.354 50.000 0.00 0.00 44.46 4.69
897 3209 2.004733 GGAGAAAACCCACGAATACGG 58.995 52.381 0.00 0.00 44.46 4.02
898 3210 2.690786 TGGAGAAAACCCACGAATACG 58.309 47.619 0.00 0.00 45.75 3.06
899 3211 5.638596 AAATGGAGAAAACCCACGAATAC 57.361 39.130 0.00 0.00 36.36 1.89
900 3212 5.648960 GGTAAATGGAGAAAACCCACGAATA 59.351 40.000 0.00 0.00 36.36 1.75
901 3213 4.461431 GGTAAATGGAGAAAACCCACGAAT 59.539 41.667 0.00 0.00 36.36 3.34
902 3214 3.822167 GGTAAATGGAGAAAACCCACGAA 59.178 43.478 0.00 0.00 36.36 3.85
903 3215 3.414269 GGTAAATGGAGAAAACCCACGA 58.586 45.455 0.00 0.00 36.36 4.35
904 3216 2.160813 CGGTAAATGGAGAAAACCCACG 59.839 50.000 0.00 0.00 36.36 4.94
905 3217 3.414269 TCGGTAAATGGAGAAAACCCAC 58.586 45.455 0.00 0.00 36.36 4.61
906 3218 3.791953 TCGGTAAATGGAGAAAACCCA 57.208 42.857 0.00 0.00 38.19 4.51
907 3219 3.119602 GCTTCGGTAAATGGAGAAAACCC 60.120 47.826 0.00 0.00 0.00 4.11
908 3220 3.756963 AGCTTCGGTAAATGGAGAAAACC 59.243 43.478 0.00 0.00 0.00 3.27
909 3221 4.435651 CGAGCTTCGGTAAATGGAGAAAAC 60.436 45.833 0.00 0.00 36.00 2.43
910 3222 3.682858 CGAGCTTCGGTAAATGGAGAAAA 59.317 43.478 0.00 0.00 36.00 2.29
911 3223 3.056393 TCGAGCTTCGGTAAATGGAGAAA 60.056 43.478 5.87 0.00 40.88 2.52
912 3224 2.494471 TCGAGCTTCGGTAAATGGAGAA 59.506 45.455 5.87 0.00 40.88 2.87
913 3225 2.097036 TCGAGCTTCGGTAAATGGAGA 58.903 47.619 5.87 0.00 40.88 3.71
914 3226 2.194271 GTCGAGCTTCGGTAAATGGAG 58.806 52.381 5.87 0.00 40.88 3.86
915 3227 1.134907 GGTCGAGCTTCGGTAAATGGA 60.135 52.381 7.51 0.00 40.88 3.41
916 3228 1.287425 GGTCGAGCTTCGGTAAATGG 58.713 55.000 7.51 0.00 40.88 3.16
917 3229 1.134788 AGGGTCGAGCTTCGGTAAATG 60.135 52.381 15.18 0.00 40.88 2.32
918 3230 1.134788 CAGGGTCGAGCTTCGGTAAAT 60.135 52.381 15.18 0.00 40.88 1.40
919 3231 0.245539 CAGGGTCGAGCTTCGGTAAA 59.754 55.000 15.18 0.00 40.88 2.01
920 3232 0.609957 TCAGGGTCGAGCTTCGGTAA 60.610 55.000 15.18 0.00 40.88 2.85
921 3233 1.001764 TCAGGGTCGAGCTTCGGTA 60.002 57.895 15.18 0.00 40.88 4.02
922 3234 2.282958 TCAGGGTCGAGCTTCGGT 60.283 61.111 15.18 0.00 40.88 4.69
923 3235 2.182030 GTCAGGGTCGAGCTTCGG 59.818 66.667 15.18 0.00 40.88 4.30
924 3236 1.444553 GTGTCAGGGTCGAGCTTCG 60.445 63.158 15.18 3.45 42.10 3.79
925 3237 1.444553 CGTGTCAGGGTCGAGCTTC 60.445 63.158 15.18 0.00 0.00 3.86
926 3238 2.651361 CGTGTCAGGGTCGAGCTT 59.349 61.111 15.18 3.43 0.00 3.74
927 3239 4.057428 GCGTGTCAGGGTCGAGCT 62.057 66.667 15.18 0.00 0.00 4.09
929 3241 2.709125 TTTGGCGTGTCAGGGTCGAG 62.709 60.000 0.00 0.00 0.00 4.04
930 3242 2.107041 ATTTGGCGTGTCAGGGTCGA 62.107 55.000 0.00 0.00 0.00 4.20
931 3243 1.635663 GATTTGGCGTGTCAGGGTCG 61.636 60.000 0.00 0.00 0.00 4.79
932 3244 1.635663 CGATTTGGCGTGTCAGGGTC 61.636 60.000 0.00 0.00 0.00 4.46
933 3245 1.671054 CGATTTGGCGTGTCAGGGT 60.671 57.895 0.00 0.00 0.00 4.34
934 3246 3.039202 GCGATTTGGCGTGTCAGGG 62.039 63.158 0.00 0.00 0.00 4.45
935 3247 2.480555 GCGATTTGGCGTGTCAGG 59.519 61.111 0.00 0.00 0.00 3.86
936 3248 2.480555 GGCGATTTGGCGTGTCAG 59.519 61.111 0.00 0.00 0.00 3.51
944 3256 3.672255 CTGCAGTGCGGCGATTTGG 62.672 63.158 12.98 0.00 36.28 3.28
945 3257 1.985447 ATCTGCAGTGCGGCGATTTG 61.985 55.000 19.61 5.78 34.49 2.32
946 3258 1.308069 AATCTGCAGTGCGGCGATTT 61.308 50.000 19.61 7.18 35.25 2.17
947 3259 1.709147 GAATCTGCAGTGCGGCGATT 61.709 55.000 19.61 20.01 38.63 3.34
948 3260 2.124983 AATCTGCAGTGCGGCGAT 60.125 55.556 19.61 13.07 34.49 4.58
949 3261 2.815211 GAATCTGCAGTGCGGCGA 60.815 61.111 19.61 11.28 34.49 5.54
950 3262 4.214383 CGAATCTGCAGTGCGGCG 62.214 66.667 19.61 13.14 34.49 6.46
951 3263 4.527157 GCGAATCTGCAGTGCGGC 62.527 66.667 19.61 9.98 34.49 6.53
952 3264 3.120385 TGCGAATCTGCAGTGCGG 61.120 61.111 18.36 18.36 40.62 5.69
958 3270 1.255882 AATTTGGGTGCGAATCTGCA 58.744 45.000 0.00 0.00 43.95 4.41
959 3271 2.682856 TCTAATTTGGGTGCGAATCTGC 59.317 45.455 0.00 0.00 0.00 4.26
1091 3422 4.878682 GTTAGGGCCCGTACCGCG 62.879 72.222 18.44 0.00 40.95 6.46
1120 3462 1.738099 GCGCTCAGTGTCGGACATT 60.738 57.895 14.78 7.27 0.00 2.71
1191 3534 1.532437 TGCACAAGAACAGAGCAATCG 59.468 47.619 0.00 0.00 29.78 3.34
1193 3536 2.854963 TCTGCACAAGAACAGAGCAAT 58.145 42.857 0.00 0.00 37.99 3.56
1234 3588 8.195436 GTGTATGAGTTAACTGCATACTAGGAA 58.805 37.037 31.35 20.90 42.85 3.36
1236 3590 6.924060 GGTGTATGAGTTAACTGCATACTAGG 59.076 42.308 31.35 0.00 42.85 3.02
1263 3620 6.318913 TGAACCCTTGAGAATATCCCAAAAA 58.681 36.000 0.00 0.00 0.00 1.94
1276 3634 2.154462 AGCACGAATTGAACCCTTGAG 58.846 47.619 0.00 0.00 0.00 3.02
1291 3649 3.865745 CCTTTACAGGATGAACTAGCACG 59.134 47.826 0.00 0.00 44.19 5.34
1359 3718 5.186996 TCTGCTGTTTCAGATTGGAAAAC 57.813 39.130 0.66 0.00 38.41 2.43
1381 3740 0.622665 CCAGCTCCCAAAGATGTCCT 59.377 55.000 0.00 0.00 39.87 3.85
1568 3999 1.160329 CCAAGTGCCGCTATGCCTAC 61.160 60.000 0.00 0.00 0.00 3.18
1572 4003 2.163818 TATACCAAGTGCCGCTATGC 57.836 50.000 0.00 0.00 0.00 3.14
1594 4025 2.734606 CGCCTTGAGAACACGATTGTAA 59.265 45.455 0.00 0.00 33.55 2.41
1670 4101 1.835267 AATGCATCATGGCGCCCAT 60.835 52.632 26.77 16.06 46.37 4.00
1753 4190 1.275291 TCGTCCATCTTCCTGGTGAAC 59.725 52.381 0.00 0.00 37.57 3.18
2147 4614 2.060326 TCGCAACCGAACTTCTACTG 57.940 50.000 0.00 0.00 41.17 2.74
2160 4627 5.927115 AGCTAGCTAGGTTAATAATCGCAAC 59.073 40.000 17.69 0.00 0.00 4.17
2165 4632 7.657761 TCTTTGCAGCTAGCTAGGTTAATAATC 59.342 37.037 22.58 2.03 45.94 1.75
2294 4799 1.454201 AGACAGACTCGATCGCTGAA 58.546 50.000 22.67 1.47 33.94 3.02
2753 5285 6.767524 AAACATTACTGAACAACTGGACAA 57.232 33.333 0.00 0.00 0.00 3.18
2867 5400 6.069847 TCGGGACTTTGGGATAAGAAATAAGT 60.070 38.462 0.00 0.00 0.00 2.24
3019 5661 6.037830 GCCAGTAGACACAGTTGTTTTTCTTA 59.962 38.462 0.00 0.00 35.47 2.10
3201 5853 1.921982 TGGAGCCAGCAAGCAAATTA 58.078 45.000 0.55 0.00 34.23 1.40
3406 6063 0.910513 CGACGATCTTCAGCGAACTG 59.089 55.000 0.00 0.00 45.95 3.16
3409 6066 1.071019 GCACGACGATCTTCAGCGAA 61.071 55.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.