Multiple sequence alignment - TraesCS5B01G344500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G344500 chr5B 100.000 2447 0 0 1 2447 527493004 527495450 0.000000e+00 4519.0
1 TraesCS5B01G344500 chr5B 81.322 1044 145 31 715 1737 527784808 527785822 0.000000e+00 802.0
2 TraesCS5B01G344500 chr5B 86.924 673 32 16 1755 2392 527772017 527772668 0.000000e+00 704.0
3 TraesCS5B01G344500 chr5B 92.739 303 17 3 1439 1741 527770427 527770724 1.340000e-117 433.0
4 TraesCS5B01G344500 chr5B 79.739 612 105 11 931 1534 527606171 527606771 2.250000e-115 425.0
5 TraesCS5B01G344500 chr5B 92.593 108 4 3 300 407 527784468 527784571 4.210000e-33 152.0
6 TraesCS5B01G344500 chr5B 89.655 58 4 2 1974 2030 527607227 527607283 3.380000e-09 73.1
7 TraesCS5B01G344500 chr5B 100.000 29 0 0 530 558 344297938 344297966 1.000000e-03 54.7
8 TraesCS5B01G344500 chr5B 100.000 28 0 0 529 556 255781842 255781869 4.000000e-03 52.8
9 TraesCS5B01G344500 chr5D 92.358 1531 69 19 910 2400 434675704 434674182 0.000000e+00 2135.0
10 TraesCS5B01G344500 chr5D 89.106 1230 70 29 1174 2345 434551360 434552583 0.000000e+00 1471.0
11 TraesCS5B01G344500 chr5D 81.134 1023 141 31 726 1724 434657409 434656415 0.000000e+00 773.0
12 TraesCS5B01G344500 chr5D 80.323 1052 148 36 652 1682 434601891 434602904 0.000000e+00 741.0
13 TraesCS5B01G344500 chr5D 83.356 721 93 14 857 1570 434679429 434678729 2.050000e-180 641.0
14 TraesCS5B01G344500 chr5D 83.879 428 42 12 802 1229 434713991 434713591 1.370000e-102 383.0
15 TraesCS5B01G344500 chr5D 80.815 417 73 5 1118 1529 435345919 435345505 1.090000e-83 320.0
16 TraesCS5B01G344500 chr5D 79.787 376 39 17 37 406 434665394 434665050 3.140000e-59 239.0
17 TraesCS5B01G344500 chr5D 85.167 209 25 4 1314 1519 434713578 434713373 2.470000e-50 209.0
18 TraesCS5B01G344500 chr5D 83.756 197 26 4 212 406 434601507 434601699 5.370000e-42 182.0
19 TraesCS5B01G344500 chr5D 90.179 112 10 1 2230 2340 434603287 434603398 7.050000e-31 145.0
20 TraesCS5B01G344500 chr5D 88.182 110 13 0 2230 2339 434575509 434575618 5.490000e-27 132.0
21 TraesCS5B01G344500 chr5D 76.555 209 34 9 1830 2035 434713126 434712930 1.550000e-17 100.0
22 TraesCS5B01G344500 chr5D 84.536 97 12 2 69 162 435347409 435347313 2.590000e-15 93.5
23 TraesCS5B01G344500 chr5D 96.429 56 1 1 2392 2447 298986278 298986224 9.320000e-15 91.6
24 TraesCS5B01G344500 chr5D 89.041 73 7 1 1962 2033 434330679 434330751 3.350000e-14 89.8
25 TraesCS5B01G344500 chr5D 89.041 73 7 1 1962 2033 434382695 434382623 3.350000e-14 89.8
26 TraesCS5B01G344500 chr5D 98.039 51 1 0 2342 2392 434552611 434552661 3.350000e-14 89.8
27 TraesCS5B01G344500 chr5D 84.507 71 6 3 1963 2030 434568666 434568734 5.650000e-07 65.8
28 TraesCS5B01G344500 chr5A 79.822 337 37 11 33 366 548679674 548679982 1.470000e-52 217.0
29 TraesCS5B01G344500 chr5A 75.802 343 63 12 916 1255 549215151 549214826 3.260000e-34 156.0
30 TraesCS5B01G344500 chr5A 86.029 136 12 5 34 167 548664668 548664798 3.280000e-29 139.0
31 TraesCS5B01G344500 chr5A 92.188 64 4 1 2384 2447 46008397 46008335 3.350000e-14 89.8
32 TraesCS5B01G344500 chr7B 75.688 218 45 5 1126 1342 244269763 244269553 4.300000e-18 102.0
33 TraesCS5B01G344500 chr4D 98.182 55 0 1 2393 2447 24675622 24675569 7.200000e-16 95.3
34 TraesCS5B01G344500 chr7D 96.429 56 2 0 2392 2447 26392824 26392879 2.590000e-15 93.5
35 TraesCS5B01G344500 chr6B 94.915 59 2 1 2390 2447 95757521 95757579 9.320000e-15 91.6
36 TraesCS5B01G344500 chr2D 92.308 65 4 1 2384 2447 455269190 455269126 9.320000e-15 91.6
37 TraesCS5B01G344500 chr4B 90.909 66 6 0 2382 2447 338425962 338425897 3.350000e-14 89.8
38 TraesCS5B01G344500 chr1B 91.045 67 3 2 2381 2447 259414325 259414388 1.210000e-13 87.9
39 TraesCS5B01G344500 chr3B 89.706 68 4 3 2382 2447 651279674 651279608 1.560000e-12 84.2
40 TraesCS5B01G344500 chr3B 100.000 31 0 0 526 556 793561442 793561472 9.450000e-05 58.4
41 TraesCS5B01G344500 chr3B 100.000 29 0 0 528 556 756110799 756110827 1.000000e-03 54.7
42 TraesCS5B01G344500 chr3B 100.000 28 0 0 529 556 824185485 824185458 4.000000e-03 52.8
43 TraesCS5B01G344500 chr3A 100.000 29 0 0 530 558 181683392 181683364 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G344500 chr5B 527493004 527495450 2446 False 4519.000000 4519 100.000000 1 2447 1 chr5B.!!$F3 2446
1 TraesCS5B01G344500 chr5B 527770427 527772668 2241 False 568.500000 704 89.831500 1439 2392 2 chr5B.!!$F5 953
2 TraesCS5B01G344500 chr5B 527784468 527785822 1354 False 477.000000 802 86.957500 300 1737 2 chr5B.!!$F6 1437
3 TraesCS5B01G344500 chr5B 527606171 527607283 1112 False 249.050000 425 84.697000 931 2030 2 chr5B.!!$F4 1099
4 TraesCS5B01G344500 chr5D 434674182 434679429 5247 True 1388.000000 2135 87.857000 857 2400 2 chr5D.!!$R5 1543
5 TraesCS5B01G344500 chr5D 434551360 434552661 1301 False 780.400000 1471 93.572500 1174 2392 2 chr5D.!!$F4 1218
6 TraesCS5B01G344500 chr5D 434656415 434657409 994 True 773.000000 773 81.134000 726 1724 1 chr5D.!!$R3 998
7 TraesCS5B01G344500 chr5D 434601507 434603398 1891 False 356.000000 741 84.752667 212 2340 3 chr5D.!!$F5 2128
8 TraesCS5B01G344500 chr5D 434712930 434713991 1061 True 230.666667 383 81.867000 802 2035 3 chr5D.!!$R6 1233
9 TraesCS5B01G344500 chr5D 435345505 435347409 1904 True 206.750000 320 82.675500 69 1529 2 chr5D.!!$R7 1460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 452 0.034186 AAATTGCATCTCAGCCCGGA 60.034 50.0 0.73 0.00 0.0 5.14 F
609 622 0.179240 CTCGTTGCGCAATCAGACAC 60.179 55.0 27.79 11.29 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 6059 1.174712 AAAGCAGCACGGTCTTGCAT 61.175 50.000 13.79 1.71 45.62 3.96 R
2201 8274 1.532868 CCTGTCTTGCCGAAGTGAAAG 59.467 52.381 0.00 0.00 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.699410 ATGAATATGTCCTTATTTTCTTGTCCA 57.301 29.630 0.00 0.00 0.00 4.02
34 35 9.527157 TGAATATGTCCTTATTTTCTTGTCCAA 57.473 29.630 0.00 0.00 0.00 3.53
38 39 7.227049 TGTCCTTATTTTCTTGTCCAATTCC 57.773 36.000 0.00 0.00 0.00 3.01
39 40 6.210584 TGTCCTTATTTTCTTGTCCAATTCCC 59.789 38.462 0.00 0.00 0.00 3.97
40 41 5.719563 TCCTTATTTTCTTGTCCAATTCCCC 59.280 40.000 0.00 0.00 0.00 4.81
41 42 5.721480 CCTTATTTTCTTGTCCAATTCCCCT 59.279 40.000 0.00 0.00 0.00 4.79
42 43 6.213397 CCTTATTTTCTTGTCCAATTCCCCTT 59.787 38.462 0.00 0.00 0.00 3.95
43 44 5.745312 ATTTTCTTGTCCAATTCCCCTTC 57.255 39.130 0.00 0.00 0.00 3.46
44 45 4.469469 TTTCTTGTCCAATTCCCCTTCT 57.531 40.909 0.00 0.00 0.00 2.85
45 46 3.439857 TCTTGTCCAATTCCCCTTCTG 57.560 47.619 0.00 0.00 0.00 3.02
46 47 2.986019 TCTTGTCCAATTCCCCTTCTGA 59.014 45.455 0.00 0.00 0.00 3.27
47 48 3.397618 TCTTGTCCAATTCCCCTTCTGAA 59.602 43.478 0.00 0.00 0.00 3.02
48 49 4.044571 TCTTGTCCAATTCCCCTTCTGAAT 59.955 41.667 0.00 0.00 33.97 2.57
49 50 3.968265 TGTCCAATTCCCCTTCTGAATC 58.032 45.455 0.00 0.00 31.39 2.52
50 51 3.333381 TGTCCAATTCCCCTTCTGAATCA 59.667 43.478 0.00 0.00 31.39 2.57
51 52 4.017222 TGTCCAATTCCCCTTCTGAATCAT 60.017 41.667 0.00 0.00 31.39 2.45
52 53 4.958581 GTCCAATTCCCCTTCTGAATCATT 59.041 41.667 0.00 0.00 31.39 2.57
53 54 5.068329 GTCCAATTCCCCTTCTGAATCATTC 59.932 44.000 0.00 0.00 31.39 2.67
54 55 5.043881 TCCAATTCCCCTTCTGAATCATTCT 60.044 40.000 0.00 0.00 31.39 2.40
55 56 5.659971 CCAATTCCCCTTCTGAATCATTCTT 59.340 40.000 0.00 0.00 31.39 2.52
56 57 6.835488 CCAATTCCCCTTCTGAATCATTCTTA 59.165 38.462 0.00 0.00 31.39 2.10
57 58 7.508296 CCAATTCCCCTTCTGAATCATTCTTAT 59.492 37.037 0.00 0.00 31.39 1.73
58 59 8.921205 CAATTCCCCTTCTGAATCATTCTTATT 58.079 33.333 0.00 0.00 31.39 1.40
59 60 9.498039 AATTCCCCTTCTGAATCATTCTTATTT 57.502 29.630 0.00 0.00 31.39 1.40
60 61 8.899887 TTCCCCTTCTGAATCATTCTTATTTT 57.100 30.769 0.00 0.00 0.00 1.82
61 62 8.525290 TCCCCTTCTGAATCATTCTTATTTTC 57.475 34.615 0.00 0.00 0.00 2.29
62 63 8.339247 TCCCCTTCTGAATCATTCTTATTTTCT 58.661 33.333 0.00 0.00 0.00 2.52
63 64 8.975295 CCCCTTCTGAATCATTCTTATTTTCTT 58.025 33.333 0.00 0.00 0.00 2.52
64 65 9.798994 CCCTTCTGAATCATTCTTATTTTCTTG 57.201 33.333 0.00 0.00 0.00 3.02
68 69 9.519191 TCTGAATCATTCTTATTTTCTTGTCCA 57.481 29.630 0.00 0.00 0.00 4.02
74 75 9.699410 TCATTCTTATTTTCTTGTCCATATGGT 57.301 29.630 21.28 1.34 36.34 3.55
75 76 9.956720 CATTCTTATTTTCTTGTCCATATGGTC 57.043 33.333 21.28 16.31 36.34 4.02
76 77 7.786178 TCTTATTTTCTTGTCCATATGGTCG 57.214 36.000 21.28 8.49 36.34 4.79
153 156 7.503521 TGTATTGTAATTGAGCAGTCAACAA 57.496 32.000 0.00 0.00 45.58 2.83
159 162 4.717233 ATTGAGCAGTCAACAAAACACA 57.283 36.364 0.00 0.00 45.58 3.72
162 165 3.443329 TGAGCAGTCAACAAAACACACAT 59.557 39.130 0.00 0.00 0.00 3.21
163 166 4.032703 AGCAGTCAACAAAACACACATC 57.967 40.909 0.00 0.00 0.00 3.06
164 167 3.443329 AGCAGTCAACAAAACACACATCA 59.557 39.130 0.00 0.00 0.00 3.07
165 168 3.792956 GCAGTCAACAAAACACACATCAG 59.207 43.478 0.00 0.00 0.00 2.90
166 169 4.438608 GCAGTCAACAAAACACACATCAGA 60.439 41.667 0.00 0.00 0.00 3.27
167 170 5.734220 GCAGTCAACAAAACACACATCAGAT 60.734 40.000 0.00 0.00 0.00 2.90
168 171 5.684184 CAGTCAACAAAACACACATCAGATG 59.316 40.000 9.03 9.03 0.00 2.90
169 172 4.442073 GTCAACAAAACACACATCAGATGC 59.558 41.667 10.59 0.00 0.00 3.91
170 173 3.272439 ACAAAACACACATCAGATGCG 57.728 42.857 10.59 3.38 0.00 4.73
171 174 1.980844 CAAAACACACATCAGATGCGC 59.019 47.619 10.59 0.00 0.00 6.09
172 175 0.166597 AAACACACATCAGATGCGCG 59.833 50.000 10.59 0.00 0.00 6.86
173 176 0.670239 AACACACATCAGATGCGCGA 60.670 50.000 12.10 0.00 0.00 5.87
174 177 1.346197 CACACATCAGATGCGCGAC 59.654 57.895 12.10 0.88 0.00 5.19
175 178 1.080435 CACACATCAGATGCGCGACT 61.080 55.000 12.10 2.05 0.00 4.18
176 179 0.390340 ACACATCAGATGCGCGACTT 60.390 50.000 12.10 0.00 0.00 3.01
177 180 0.723414 CACATCAGATGCGCGACTTT 59.277 50.000 12.10 0.00 0.00 2.66
178 181 1.129251 CACATCAGATGCGCGACTTTT 59.871 47.619 12.10 0.00 0.00 2.27
179 182 1.806542 ACATCAGATGCGCGACTTTTT 59.193 42.857 12.10 0.00 0.00 1.94
209 212 5.428496 TCAGAGACATTTGTTTCAGCTTG 57.572 39.130 4.32 0.00 32.20 4.01
220 223 6.831727 TTGTTTCAGCTTGAAAATGTGATG 57.168 33.333 11.33 0.00 46.53 3.07
241 244 3.820467 TGTGCCACTTTCACAGGAAATAG 59.180 43.478 0.00 0.00 41.89 1.73
243 246 4.518970 GTGCCACTTTCACAGGAAATAGAA 59.481 41.667 0.00 0.00 41.89 2.10
253 256 3.832490 ACAGGAAATAGAAAAAGGTGGCC 59.168 43.478 0.00 0.00 0.00 5.36
255 258 2.416836 GGAAATAGAAAAAGGTGGCCGC 60.417 50.000 8.12 8.12 0.00 6.53
263 266 1.734388 AAAGGTGGCCGCTTCACAAC 61.734 55.000 17.49 0.00 36.90 3.32
266 269 1.299089 GTGGCCGCTTCACAACAAC 60.299 57.895 9.68 0.00 35.39 3.32
290 295 3.959293 TGATTCTAGTCGTGTACTCCCA 58.041 45.455 0.00 0.00 39.80 4.37
297 302 3.223435 AGTCGTGTACTCCCATATCCAG 58.777 50.000 0.00 0.00 30.33 3.86
366 371 5.496133 AATCAAACAGATCATGTGCTAGC 57.504 39.130 8.10 8.10 43.00 3.42
367 372 4.212143 TCAAACAGATCATGTGCTAGCT 57.788 40.909 17.23 0.00 43.00 3.32
368 373 5.343307 TCAAACAGATCATGTGCTAGCTA 57.657 39.130 17.23 5.45 43.00 3.32
369 374 5.354767 TCAAACAGATCATGTGCTAGCTAG 58.645 41.667 16.84 16.84 43.00 3.42
370 375 4.333913 AACAGATCATGTGCTAGCTAGG 57.666 45.455 22.10 7.07 43.00 3.02
371 376 2.036992 ACAGATCATGTGCTAGCTAGGC 59.963 50.000 22.10 14.31 41.91 3.93
372 377 2.036862 CAGATCATGTGCTAGCTAGGCA 59.963 50.000 22.10 16.59 37.36 4.75
413 418 9.784531 ACTAAATGTTCAGAGAGAAATTCTTCA 57.215 29.630 0.00 0.00 38.13 3.02
417 422 6.772605 TGTTCAGAGAGAAATTCTTCATCCA 58.227 36.000 0.00 0.00 38.13 3.41
418 423 6.877855 TGTTCAGAGAGAAATTCTTCATCCAG 59.122 38.462 0.00 0.00 38.13 3.86
419 424 6.864151 TCAGAGAGAAATTCTTCATCCAGA 57.136 37.500 0.00 0.00 35.87 3.86
422 427 6.877855 CAGAGAGAAATTCTTCATCCAGACAA 59.122 38.462 0.00 0.00 35.87 3.18
423 428 7.553402 CAGAGAGAAATTCTTCATCCAGACAAT 59.447 37.037 0.00 0.00 35.87 2.71
425 430 8.053026 AGAGAAATTCTTCATCCAGACAATTG 57.947 34.615 3.24 3.24 33.64 2.32
426 431 7.122353 AGAGAAATTCTTCATCCAGACAATTGG 59.878 37.037 10.83 0.00 35.36 3.16
435 440 4.952071 TCCAGACAATTGGAAAATTGCA 57.048 36.364 10.83 0.00 44.09 4.08
436 441 5.486735 TCCAGACAATTGGAAAATTGCAT 57.513 34.783 10.83 0.00 44.09 3.96
437 442 5.481105 TCCAGACAATTGGAAAATTGCATC 58.519 37.500 10.83 3.32 44.09 3.91
438 443 5.246656 TCCAGACAATTGGAAAATTGCATCT 59.753 36.000 10.83 5.21 44.09 2.90
439 444 5.579511 CCAGACAATTGGAAAATTGCATCTC 59.420 40.000 10.83 2.45 42.37 2.75
440 445 6.160684 CAGACAATTGGAAAATTGCATCTCA 58.839 36.000 10.83 0.00 42.37 3.27
441 446 6.310467 CAGACAATTGGAAAATTGCATCTCAG 59.690 38.462 10.83 0.00 42.37 3.35
442 447 4.933400 ACAATTGGAAAATTGCATCTCAGC 59.067 37.500 10.83 0.00 42.37 4.26
443 448 3.598019 TTGGAAAATTGCATCTCAGCC 57.402 42.857 0.00 0.00 0.00 4.85
444 449 1.826720 TGGAAAATTGCATCTCAGCCC 59.173 47.619 0.00 0.00 0.00 5.19
445 450 1.202336 GGAAAATTGCATCTCAGCCCG 60.202 52.381 0.00 0.00 0.00 6.13
446 451 0.819582 AAAATTGCATCTCAGCCCGG 59.180 50.000 0.00 0.00 0.00 5.73
447 452 0.034186 AAATTGCATCTCAGCCCGGA 60.034 50.000 0.73 0.00 0.00 5.14
449 454 1.059098 ATTGCATCTCAGCCCGGATA 58.941 50.000 0.73 0.00 0.00 2.59
465 470 2.476199 GGATATCTCCATCTCAGGGGG 58.524 57.143 2.05 0.00 41.64 5.40
482 487 2.333688 GGGGGCACTCTACAAGATTC 57.666 55.000 0.00 0.00 0.00 2.52
483 488 1.840635 GGGGGCACTCTACAAGATTCT 59.159 52.381 0.00 0.00 0.00 2.40
485 490 3.454812 GGGGGCACTCTACAAGATTCTTA 59.545 47.826 0.00 0.00 0.00 2.10
486 491 4.103311 GGGGGCACTCTACAAGATTCTTAT 59.897 45.833 0.00 0.00 0.00 1.73
487 492 5.301555 GGGGCACTCTACAAGATTCTTATC 58.698 45.833 0.00 0.00 0.00 1.75
488 493 4.985409 GGGCACTCTACAAGATTCTTATCG 59.015 45.833 0.00 0.00 35.85 2.92
512 523 9.424319 TCGTTAGGATATAATCAAGAATCAAGC 57.576 33.333 0.00 0.00 0.00 4.01
513 524 9.208022 CGTTAGGATATAATCAAGAATCAAGCA 57.792 33.333 0.00 0.00 0.00 3.91
515 526 7.992754 AGGATATAATCAAGAATCAAGCACC 57.007 36.000 0.00 0.00 0.00 5.01
517 528 6.716628 GGATATAATCAAGAATCAAGCACCCA 59.283 38.462 0.00 0.00 0.00 4.51
518 529 7.094463 GGATATAATCAAGAATCAAGCACCCAG 60.094 40.741 0.00 0.00 0.00 4.45
519 530 2.205022 TCAAGAATCAAGCACCCAGG 57.795 50.000 0.00 0.00 0.00 4.45
520 531 1.704628 TCAAGAATCAAGCACCCAGGA 59.295 47.619 0.00 0.00 0.00 3.86
521 532 2.309755 TCAAGAATCAAGCACCCAGGAT 59.690 45.455 0.00 0.00 0.00 3.24
522 533 3.523157 TCAAGAATCAAGCACCCAGGATA 59.477 43.478 0.00 0.00 0.00 2.59
523 534 4.018506 TCAAGAATCAAGCACCCAGGATAA 60.019 41.667 0.00 0.00 0.00 1.75
524 535 4.591321 AGAATCAAGCACCCAGGATAAA 57.409 40.909 0.00 0.00 0.00 1.40
525 536 5.134725 AGAATCAAGCACCCAGGATAAAT 57.865 39.130 0.00 0.00 0.00 1.40
526 537 6.266131 AGAATCAAGCACCCAGGATAAATA 57.734 37.500 0.00 0.00 0.00 1.40
527 538 6.672593 AGAATCAAGCACCCAGGATAAATAA 58.327 36.000 0.00 0.00 0.00 1.40
528 539 7.125391 AGAATCAAGCACCCAGGATAAATAAA 58.875 34.615 0.00 0.00 0.00 1.40
529 540 7.786464 AGAATCAAGCACCCAGGATAAATAAAT 59.214 33.333 0.00 0.00 0.00 1.40
530 541 9.077885 GAATCAAGCACCCAGGATAAATAAATA 57.922 33.333 0.00 0.00 0.00 1.40
531 542 7.817418 TCAAGCACCCAGGATAAATAAATAC 57.183 36.000 0.00 0.00 0.00 1.89
532 543 7.582719 TCAAGCACCCAGGATAAATAAATACT 58.417 34.615 0.00 0.00 0.00 2.12
533 544 7.719633 TCAAGCACCCAGGATAAATAAATACTC 59.280 37.037 0.00 0.00 0.00 2.59
534 545 6.543735 AGCACCCAGGATAAATAAATACTCC 58.456 40.000 0.00 0.00 0.00 3.85
535 546 5.710567 GCACCCAGGATAAATAAATACTCCC 59.289 44.000 0.00 0.00 0.00 4.30
536 547 6.467339 GCACCCAGGATAAATAAATACTCCCT 60.467 42.308 0.00 0.00 0.00 4.20
537 548 7.168905 CACCCAGGATAAATAAATACTCCCTC 58.831 42.308 0.00 0.00 0.00 4.30
538 549 6.274908 ACCCAGGATAAATAAATACTCCCTCC 59.725 42.308 0.00 0.00 0.00 4.30
539 550 6.407202 CCAGGATAAATAAATACTCCCTCCG 58.593 44.000 0.00 0.00 0.00 4.63
540 551 6.013639 CCAGGATAAATAAATACTCCCTCCGT 60.014 42.308 0.00 0.00 0.00 4.69
541 552 7.179694 CCAGGATAAATAAATACTCCCTCCGTA 59.820 40.741 0.00 0.00 0.00 4.02
542 553 8.033626 CAGGATAAATAAATACTCCCTCCGTAC 58.966 40.741 0.00 0.00 0.00 3.67
543 554 7.179872 AGGATAAATAAATACTCCCTCCGTACC 59.820 40.741 0.00 0.00 0.00 3.34
544 555 7.038799 GGATAAATAAATACTCCCTCCGTACCA 60.039 40.741 0.00 0.00 0.00 3.25
545 556 6.564557 AAATAAATACTCCCTCCGTACCAA 57.435 37.500 0.00 0.00 0.00 3.67
546 557 6.564557 AATAAATACTCCCTCCGTACCAAA 57.435 37.500 0.00 0.00 0.00 3.28
547 558 4.914177 AAATACTCCCTCCGTACCAAAA 57.086 40.909 0.00 0.00 0.00 2.44
548 559 5.446260 AAATACTCCCTCCGTACCAAAAT 57.554 39.130 0.00 0.00 0.00 1.82
549 560 6.564557 AAATACTCCCTCCGTACCAAAATA 57.435 37.500 0.00 0.00 0.00 1.40
550 561 5.803237 ATACTCCCTCCGTACCAAAATAG 57.197 43.478 0.00 0.00 0.00 1.73
551 562 3.716431 ACTCCCTCCGTACCAAAATAGA 58.284 45.455 0.00 0.00 0.00 1.98
552 563 4.296056 ACTCCCTCCGTACCAAAATAGAT 58.704 43.478 0.00 0.00 0.00 1.98
553 564 4.101119 ACTCCCTCCGTACCAAAATAGATG 59.899 45.833 0.00 0.00 0.00 2.90
554 565 4.291792 TCCCTCCGTACCAAAATAGATGA 58.708 43.478 0.00 0.00 0.00 2.92
555 566 4.100498 TCCCTCCGTACCAAAATAGATGAC 59.900 45.833 0.00 0.00 0.00 3.06
556 567 4.101119 CCCTCCGTACCAAAATAGATGACT 59.899 45.833 0.00 0.00 0.00 3.41
557 568 5.290386 CCTCCGTACCAAAATAGATGACTC 58.710 45.833 0.00 0.00 0.00 3.36
558 569 4.928601 TCCGTACCAAAATAGATGACTCG 58.071 43.478 0.00 0.00 0.00 4.18
559 570 4.400251 TCCGTACCAAAATAGATGACTCGT 59.600 41.667 0.00 0.00 0.00 4.18
560 571 4.738740 CCGTACCAAAATAGATGACTCGTC 59.261 45.833 0.00 0.00 0.00 4.20
561 572 5.450137 CCGTACCAAAATAGATGACTCGTCT 60.450 44.000 6.05 6.05 33.90 4.18
562 573 6.238566 CCGTACCAAAATAGATGACTCGTCTA 60.239 42.308 9.93 9.93 36.57 2.59
563 574 7.361127 CGTACCAAAATAGATGACTCGTCTAT 58.639 38.462 13.19 13.19 42.42 1.98
572 583 9.666626 AATAGATGACTCGTCTATTTTAGAACG 57.333 33.333 21.02 0.00 45.06 3.95
573 584 6.496571 AGATGACTCGTCTATTTTAGAACGG 58.503 40.000 0.00 0.00 36.40 4.44
574 585 5.885230 TGACTCGTCTATTTTAGAACGGA 57.115 39.130 0.00 0.00 36.40 4.69
575 586 5.877031 TGACTCGTCTATTTTAGAACGGAG 58.123 41.667 0.00 6.83 36.40 4.63
576 587 5.163683 TGACTCGTCTATTTTAGAACGGAGG 60.164 44.000 0.00 0.00 36.40 4.30
577 588 4.097589 ACTCGTCTATTTTAGAACGGAGGG 59.902 45.833 10.61 0.00 36.40 4.30
578 589 4.272489 TCGTCTATTTTAGAACGGAGGGA 58.728 43.478 0.00 0.00 36.40 4.20
579 590 4.337555 TCGTCTATTTTAGAACGGAGGGAG 59.662 45.833 0.00 0.00 36.40 4.30
580 591 4.097589 CGTCTATTTTAGAACGGAGGGAGT 59.902 45.833 0.00 0.00 36.40 3.85
609 622 0.179240 CTCGTTGCGCAATCAGACAC 60.179 55.000 27.79 11.29 0.00 3.67
621 634 2.566833 TCAGACACAAATGGACCCAG 57.433 50.000 0.00 0.00 0.00 4.45
625 638 3.384467 CAGACACAAATGGACCCAGTTTT 59.616 43.478 0.00 0.00 31.54 2.43
626 639 4.030216 AGACACAAATGGACCCAGTTTTT 58.970 39.130 0.00 0.00 31.54 1.94
628 641 3.772025 ACACAAATGGACCCAGTTTTTGA 59.228 39.130 16.23 0.00 31.54 2.69
636 649 2.820197 GACCCAGTTTTTGATGGTCCTC 59.180 50.000 0.00 0.00 39.65 3.71
637 650 2.176798 ACCCAGTTTTTGATGGTCCTCA 59.823 45.455 0.00 0.00 34.58 3.86
642 655 4.023707 CAGTTTTTGATGGTCCTCAGTCAC 60.024 45.833 0.00 0.00 0.00 3.67
644 657 4.371624 TTTTGATGGTCCTCAGTCACAT 57.628 40.909 0.00 0.00 0.00 3.21
645 658 3.339253 TTGATGGTCCTCAGTCACATG 57.661 47.619 0.00 0.00 0.00 3.21
646 659 2.259917 TGATGGTCCTCAGTCACATGT 58.740 47.619 0.00 0.00 0.00 3.21
647 660 2.234661 TGATGGTCCTCAGTCACATGTC 59.765 50.000 0.00 0.00 0.00 3.06
648 661 0.976641 TGGTCCTCAGTCACATGTCC 59.023 55.000 0.00 0.00 0.00 4.02
650 663 0.250513 GTCCTCAGTCACATGTCCCC 59.749 60.000 0.00 0.00 0.00 4.81
669 698 2.991250 CCTGAAACAGGTCAGTATGGG 58.009 52.381 9.36 0.00 45.82 4.00
677 706 3.209410 CAGGTCAGTATGGGAGCAATTC 58.791 50.000 0.00 0.00 36.16 2.17
678 707 2.846206 AGGTCAGTATGGGAGCAATTCA 59.154 45.455 0.00 0.00 36.16 2.57
702 731 2.846193 TGTCCAAGCACCAAAGACTAC 58.154 47.619 0.00 0.00 0.00 2.73
710 739 2.603560 GCACCAAAGACTACGCTGATAC 59.396 50.000 0.00 0.00 0.00 2.24
711 740 3.676324 GCACCAAAGACTACGCTGATACT 60.676 47.826 0.00 0.00 0.00 2.12
713 742 4.017808 ACCAAAGACTACGCTGATACTCT 58.982 43.478 0.00 0.00 0.00 3.24
714 743 4.096682 ACCAAAGACTACGCTGATACTCTC 59.903 45.833 0.00 0.00 0.00 3.20
715 744 4.096532 CCAAAGACTACGCTGATACTCTCA 59.903 45.833 0.00 0.00 0.00 3.27
731 760 9.376075 TGATACTCTCAGAGAAATCAAATCAAC 57.624 33.333 9.27 0.00 34.98 3.18
736 765 8.037382 TCTCAGAGAAATCAAATCAACATCAC 57.963 34.615 0.00 0.00 0.00 3.06
737 766 7.662669 TCTCAGAGAAATCAAATCAACATCACA 59.337 33.333 0.00 0.00 0.00 3.58
739 768 8.294577 TCAGAGAAATCAAATCAACATCACAAG 58.705 33.333 0.00 0.00 0.00 3.16
754 786 1.473497 ACAAGCACATTGCATGCCCA 61.473 50.000 16.68 1.46 44.98 5.36
756 788 3.474900 ACAAGCACATTGCATGCCCATA 61.475 45.455 16.68 0.00 44.98 2.74
787 819 3.190744 CAGCATTGCATGTTCTGACTTCT 59.809 43.478 11.91 0.00 0.00 2.85
799 834 0.318441 TGACTTCTTGGCTCTGTCCG 59.682 55.000 0.00 0.00 0.00 4.79
847 884 2.431942 GCACCTGCACTGCATTGC 60.432 61.111 21.14 21.14 43.31 3.56
855 892 2.074547 GCACTGCATTGCATTGTTCT 57.925 45.000 24.38 0.00 40.52 3.01
940 1793 1.829533 AAGCCAAGCACCACCACAG 60.830 57.895 0.00 0.00 0.00 3.66
995 1859 3.117888 TCAGCCAAGAAACAAGGAGAAGT 60.118 43.478 0.00 0.00 0.00 3.01
1012 1877 0.905357 AGTAGTCATGGTCAGTGCCC 59.095 55.000 0.00 0.00 0.00 5.36
1052 1930 3.152341 CAAAGAAGTGGCAGAAGATGGT 58.848 45.455 0.00 0.00 0.00 3.55
1056 1934 1.001641 GTGGCAGAAGATGGTGGCT 60.002 57.895 0.00 0.00 39.88 4.75
1059 1937 1.565759 TGGCAGAAGATGGTGGCTATT 59.434 47.619 0.00 0.00 39.88 1.73
1143 2140 1.517832 CTCAGTAGCGGTGAAGGGG 59.482 63.158 0.00 0.00 0.00 4.79
1162 2162 1.134098 GGCACTGCATGGTATACACCT 60.134 52.381 5.01 0.00 45.98 4.00
1164 2164 2.473816 CACTGCATGGTATACACCTCG 58.526 52.381 5.01 0.00 45.98 4.63
1170 2170 1.045407 TGGTATACACCTCGGATGGC 58.955 55.000 5.01 0.00 45.98 4.40
1269 5955 3.599285 ATTCGCGGGCGGACAAGAA 62.599 57.895 13.60 0.00 40.25 2.52
1373 6059 1.841302 ATGGCGTTCCTGAGCTCCAA 61.841 55.000 12.15 0.00 0.00 3.53
1397 6083 0.035317 AGACCGTGCTGCTTTGATGA 59.965 50.000 0.00 0.00 0.00 2.92
1682 6389 9.609346 AGTAAATGTGTACACTTTGAAACTACT 57.391 29.630 25.60 22.08 0.00 2.57
1741 6456 7.672983 AAACTAACCAAGTCTCACATATGTG 57.327 36.000 26.83 26.83 41.76 3.21
1743 6458 7.476540 ACTAACCAAGTCTCACATATGTGTA 57.523 36.000 30.03 19.14 39.65 2.90
1744 6459 8.079211 ACTAACCAAGTCTCACATATGTGTAT 57.921 34.615 30.03 14.91 39.65 2.29
1745 6460 7.981789 ACTAACCAAGTCTCACATATGTGTATG 59.018 37.037 30.03 21.66 39.65 2.39
1746 6461 5.118990 ACCAAGTCTCACATATGTGTATGC 58.881 41.667 30.03 19.67 45.76 3.14
1747 6462 5.118286 CCAAGTCTCACATATGTGTATGCA 58.882 41.667 30.03 13.58 45.76 3.96
1748 6463 5.235831 CCAAGTCTCACATATGTGTATGCAG 59.764 44.000 30.03 21.12 45.76 4.41
1749 6464 4.375272 AGTCTCACATATGTGTATGCAGC 58.625 43.478 30.03 17.03 45.76 5.25
1751 6466 4.571984 GTCTCACATATGTGTATGCAGCAA 59.428 41.667 30.03 10.97 45.76 3.91
1752 6467 5.237996 GTCTCACATATGTGTATGCAGCAAT 59.762 40.000 30.03 0.00 45.76 3.56
1779 7783 2.766970 TGACTTTACAAGCAAACGCC 57.233 45.000 0.00 0.00 0.00 5.68
1821 7837 5.536260 TGCATATGAGTTAGCAGCTTAGAG 58.464 41.667 6.97 0.00 32.48 2.43
1834 7850 4.084118 GCAGCTTAGAGTCACACAAAAGAG 60.084 45.833 0.00 0.00 0.00 2.85
2201 8274 3.655276 TGGACGAGTTACTGACCTTTC 57.345 47.619 0.00 0.00 0.00 2.62
2211 8301 5.753921 AGTTACTGACCTTTCTTTCACTTCG 59.246 40.000 0.00 0.00 0.00 3.79
2236 8326 2.626840 GACAGGAGTCAAATCAGAGCC 58.373 52.381 0.00 0.00 44.34 4.70
2410 8532 8.522542 AATCATATATACTACTCCCTCCGTTC 57.477 38.462 0.00 0.00 0.00 3.95
2411 8533 6.421485 TCATATATACTACTCCCTCCGTTCC 58.579 44.000 0.00 0.00 0.00 3.62
2412 8534 2.378378 ATACTACTCCCTCCGTTCCC 57.622 55.000 0.00 0.00 0.00 3.97
2413 8535 1.002069 TACTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2414 8536 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2415 8537 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
2416 8538 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2417 8539 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2418 8540 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2419 8541 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
2420 8542 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
2421 8543 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
2422 8544 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
2423 8545 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
2424 8546 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
2425 8547 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2426 8548 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2427 8549 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2428 8550 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2429 8551 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2430 8552 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
2431 8553 7.335924 CCGTTCCCAAATATTTGTCTTTCTAGA 59.664 37.037 23.24 7.17 36.45 2.43
2432 8554 8.726988 CGTTCCCAAATATTTGTCTTTCTAGAA 58.273 33.333 23.24 0.00 36.45 2.10
2445 8567 9.787532 TTGTCTTTCTAGAAATTTCAACAAGTG 57.212 29.630 18.02 2.79 30.65 3.16
2446 8568 9.173021 TGTCTTTCTAGAAATTTCAACAAGTGA 57.827 29.630 18.02 5.04 30.65 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.699410 TGGACAAGAAAATAAGGACATATTCAT 57.301 29.630 0.00 0.00 0.00 2.57
8 9 9.527157 TTGGACAAGAAAATAAGGACATATTCA 57.473 29.630 0.00 0.00 0.00 2.57
12 13 8.966868 GGAATTGGACAAGAAAATAAGGACATA 58.033 33.333 0.00 0.00 0.00 2.29
13 14 7.093333 GGGAATTGGACAAGAAAATAAGGACAT 60.093 37.037 0.00 0.00 0.00 3.06
14 15 6.210584 GGGAATTGGACAAGAAAATAAGGACA 59.789 38.462 0.00 0.00 0.00 4.02
15 16 6.351033 GGGGAATTGGACAAGAAAATAAGGAC 60.351 42.308 0.00 0.00 0.00 3.85
16 17 5.719563 GGGGAATTGGACAAGAAAATAAGGA 59.280 40.000 0.00 0.00 0.00 3.36
17 18 5.721480 AGGGGAATTGGACAAGAAAATAAGG 59.279 40.000 0.00 0.00 0.00 2.69
18 19 6.857437 AGGGGAATTGGACAAGAAAATAAG 57.143 37.500 0.00 0.00 0.00 1.73
19 20 7.016296 AGAAGGGGAATTGGACAAGAAAATAA 58.984 34.615 0.00 0.00 0.00 1.40
20 21 6.437162 CAGAAGGGGAATTGGACAAGAAAATA 59.563 38.462 0.00 0.00 0.00 1.40
21 22 5.246883 CAGAAGGGGAATTGGACAAGAAAAT 59.753 40.000 0.00 0.00 0.00 1.82
22 23 4.588528 CAGAAGGGGAATTGGACAAGAAAA 59.411 41.667 0.00 0.00 0.00 2.29
23 24 4.141041 TCAGAAGGGGAATTGGACAAGAAA 60.141 41.667 0.00 0.00 0.00 2.52
24 25 3.397618 TCAGAAGGGGAATTGGACAAGAA 59.602 43.478 0.00 0.00 0.00 2.52
25 26 2.986019 TCAGAAGGGGAATTGGACAAGA 59.014 45.455 0.00 0.00 0.00 3.02
26 27 3.439857 TCAGAAGGGGAATTGGACAAG 57.560 47.619 0.00 0.00 0.00 3.16
27 28 3.893753 TTCAGAAGGGGAATTGGACAA 57.106 42.857 0.00 0.00 0.00 3.18
28 29 3.333381 TGATTCAGAAGGGGAATTGGACA 59.667 43.478 0.00 0.00 35.23 4.02
29 30 3.968265 TGATTCAGAAGGGGAATTGGAC 58.032 45.455 0.00 0.00 35.23 4.02
30 31 4.886755 ATGATTCAGAAGGGGAATTGGA 57.113 40.909 0.00 0.00 35.23 3.53
31 32 5.206587 AGAATGATTCAGAAGGGGAATTGG 58.793 41.667 8.03 0.00 35.23 3.16
32 33 6.786967 AAGAATGATTCAGAAGGGGAATTG 57.213 37.500 8.03 0.00 35.23 2.32
33 34 9.498039 AAATAAGAATGATTCAGAAGGGGAATT 57.502 29.630 8.03 0.00 35.23 2.17
34 35 9.498039 AAAATAAGAATGATTCAGAAGGGGAAT 57.502 29.630 8.03 0.00 37.67 3.01
35 36 8.899887 AAAATAAGAATGATTCAGAAGGGGAA 57.100 30.769 8.03 0.00 0.00 3.97
36 37 8.339247 AGAAAATAAGAATGATTCAGAAGGGGA 58.661 33.333 8.03 0.00 0.00 4.81
37 38 8.530804 AGAAAATAAGAATGATTCAGAAGGGG 57.469 34.615 8.03 0.00 0.00 4.79
38 39 9.798994 CAAGAAAATAAGAATGATTCAGAAGGG 57.201 33.333 8.03 0.00 0.00 3.95
42 43 9.519191 TGGACAAGAAAATAAGAATGATTCAGA 57.481 29.630 8.03 0.00 0.00 3.27
48 49 9.699410 ACCATATGGACAAGAAAATAAGAATGA 57.301 29.630 28.77 0.00 38.94 2.57
49 50 9.956720 GACCATATGGACAAGAAAATAAGAATG 57.043 33.333 28.77 0.00 38.94 2.67
50 51 8.840321 CGACCATATGGACAAGAAAATAAGAAT 58.160 33.333 28.77 0.00 38.94 2.40
51 52 7.282224 CCGACCATATGGACAAGAAAATAAGAA 59.718 37.037 28.77 0.00 38.94 2.52
52 53 6.765989 CCGACCATATGGACAAGAAAATAAGA 59.234 38.462 28.77 0.00 38.94 2.10
53 54 6.542370 ACCGACCATATGGACAAGAAAATAAG 59.458 38.462 28.77 5.25 38.94 1.73
54 55 6.419791 ACCGACCATATGGACAAGAAAATAA 58.580 36.000 28.77 0.00 38.94 1.40
55 56 5.996644 ACCGACCATATGGACAAGAAAATA 58.003 37.500 28.77 0.00 38.94 1.40
56 57 4.855340 ACCGACCATATGGACAAGAAAAT 58.145 39.130 28.77 1.68 38.94 1.82
57 58 4.258543 GACCGACCATATGGACAAGAAAA 58.741 43.478 28.77 0.00 38.94 2.29
58 59 3.370103 GGACCGACCATATGGACAAGAAA 60.370 47.826 28.77 0.00 38.94 2.52
59 60 2.169769 GGACCGACCATATGGACAAGAA 59.830 50.000 28.77 0.00 38.94 2.52
60 61 1.760613 GGACCGACCATATGGACAAGA 59.239 52.381 28.77 0.00 38.94 3.02
61 62 1.484653 TGGACCGACCATATGGACAAG 59.515 52.381 28.77 17.40 44.64 3.16
62 63 1.574263 TGGACCGACCATATGGACAA 58.426 50.000 28.77 4.92 44.64 3.18
63 64 3.308626 TGGACCGACCATATGGACA 57.691 52.632 28.77 13.00 44.64 4.02
72 73 4.783764 ATTTGATTTTCTTGGACCGACC 57.216 40.909 0.00 0.00 39.54 4.79
73 74 8.674607 AGTTATATTTGATTTTCTTGGACCGAC 58.325 33.333 0.00 0.00 0.00 4.79
74 75 8.673711 CAGTTATATTTGATTTTCTTGGACCGA 58.326 33.333 0.00 0.00 0.00 4.69
75 76 7.915397 CCAGTTATATTTGATTTTCTTGGACCG 59.085 37.037 0.00 0.00 0.00 4.79
76 77 8.966868 TCCAGTTATATTTGATTTTCTTGGACC 58.033 33.333 0.00 0.00 0.00 4.46
124 125 8.236586 TTGACTGCTCAATTACAATACATTGTC 58.763 33.333 10.74 0.00 39.54 3.18
126 127 8.022550 TGTTGACTGCTCAATTACAATACATTG 58.977 33.333 0.37 0.37 38.69 2.82
127 128 8.109705 TGTTGACTGCTCAATTACAATACATT 57.890 30.769 0.00 0.00 38.69 2.71
131 134 8.409371 TGTTTTGTTGACTGCTCAATTACAATA 58.591 29.630 0.00 0.00 38.69 1.90
136 139 6.033341 GTGTGTTTTGTTGACTGCTCAATTA 58.967 36.000 0.00 0.00 38.69 1.40
139 142 3.254411 TGTGTGTTTTGTTGACTGCTCAA 59.746 39.130 0.00 0.00 33.76 3.02
140 143 2.816672 TGTGTGTTTTGTTGACTGCTCA 59.183 40.909 0.00 0.00 0.00 4.26
141 144 3.485947 TGTGTGTTTTGTTGACTGCTC 57.514 42.857 0.00 0.00 0.00 4.26
149 152 3.631144 CGCATCTGATGTGTGTTTTGTT 58.369 40.909 20.25 0.00 36.09 2.83
153 156 0.166597 CGCGCATCTGATGTGTGTTT 59.833 50.000 27.82 0.00 44.02 2.83
159 162 1.442769 AAAAGTCGCGCATCTGATGT 58.557 45.000 18.19 0.00 0.00 3.06
179 182 9.734620 CTGAAACAAATGTCTCTGATGTAAAAA 57.265 29.630 0.00 0.00 0.00 1.94
180 183 7.862372 GCTGAAACAAATGTCTCTGATGTAAAA 59.138 33.333 0.00 0.00 0.00 1.52
181 184 7.229306 AGCTGAAACAAATGTCTCTGATGTAAA 59.771 33.333 0.00 0.00 0.00 2.01
182 185 6.712095 AGCTGAAACAAATGTCTCTGATGTAA 59.288 34.615 0.00 0.00 0.00 2.41
183 186 6.233434 AGCTGAAACAAATGTCTCTGATGTA 58.767 36.000 0.00 0.00 0.00 2.29
184 187 5.068636 AGCTGAAACAAATGTCTCTGATGT 58.931 37.500 0.00 0.00 0.00 3.06
185 188 5.624344 AGCTGAAACAAATGTCTCTGATG 57.376 39.130 0.00 0.00 0.00 3.07
186 189 5.766670 TCAAGCTGAAACAAATGTCTCTGAT 59.233 36.000 0.00 0.00 0.00 2.90
187 190 5.125356 TCAAGCTGAAACAAATGTCTCTGA 58.875 37.500 0.00 0.00 0.00 3.27
188 191 5.428496 TCAAGCTGAAACAAATGTCTCTG 57.572 39.130 0.00 0.00 0.00 3.35
193 196 6.817641 TCACATTTTCAAGCTGAAACAAATGT 59.182 30.769 14.75 14.75 45.03 2.71
197 200 6.256104 CACATCACATTTTCAAGCTGAAACAA 59.744 34.615 9.83 0.21 45.03 2.83
200 203 4.746115 GCACATCACATTTTCAAGCTGAAA 59.254 37.500 7.09 7.09 43.84 2.69
209 212 4.445385 GTGAAAGTGGCACATCACATTTTC 59.555 41.667 33.26 24.98 44.52 2.29
220 223 4.072131 TCTATTTCCTGTGAAAGTGGCAC 58.928 43.478 10.29 10.29 43.39 5.01
241 244 0.318699 GTGAAGCGGCCACCTTTTTC 60.319 55.000 2.24 0.00 0.00 2.29
243 246 1.040339 TTGTGAAGCGGCCACCTTTT 61.040 50.000 2.24 0.00 33.80 2.27
253 256 4.601019 AGAATCAAAGTTGTTGTGAAGCG 58.399 39.130 0.00 0.00 0.00 4.68
255 258 7.065894 CGACTAGAATCAAAGTTGTTGTGAAG 58.934 38.462 0.00 0.00 0.00 3.02
263 266 6.308282 GGAGTACACGACTAGAATCAAAGTTG 59.692 42.308 0.00 2.59 39.06 3.16
266 269 5.105877 TGGGAGTACACGACTAGAATCAAAG 60.106 44.000 0.00 0.00 39.06 2.77
290 295 5.378230 TGCATTTCTTGTCTCCTGGATAT 57.622 39.130 0.00 0.00 0.00 1.63
297 302 3.831112 GCTTCTTGCATTTCTTGTCTCC 58.169 45.455 0.00 0.00 42.31 3.71
390 395 8.738106 GGATGAAGAATTTCTCTCTGAACATTT 58.262 33.333 0.00 0.00 33.88 2.32
407 412 6.975196 TTTTCCAATTGTCTGGATGAAGAA 57.025 33.333 4.43 0.00 45.03 2.52
408 413 7.380536 CAATTTTCCAATTGTCTGGATGAAGA 58.619 34.615 4.43 0.00 45.03 2.87
409 414 7.591006 CAATTTTCCAATTGTCTGGATGAAG 57.409 36.000 4.43 0.00 45.03 3.02
422 427 3.118519 GGGCTGAGATGCAATTTTCCAAT 60.119 43.478 0.00 0.00 34.04 3.16
423 428 2.234414 GGGCTGAGATGCAATTTTCCAA 59.766 45.455 0.00 0.00 34.04 3.53
425 430 1.202336 CGGGCTGAGATGCAATTTTCC 60.202 52.381 0.00 0.00 34.04 3.13
426 431 1.202336 CCGGGCTGAGATGCAATTTTC 60.202 52.381 0.00 0.00 34.04 2.29
429 434 0.184451 ATCCGGGCTGAGATGCAATT 59.816 50.000 0.00 0.00 34.04 2.32
430 435 1.059098 TATCCGGGCTGAGATGCAAT 58.941 50.000 0.00 0.00 34.04 3.56
431 436 1.002430 GATATCCGGGCTGAGATGCAA 59.998 52.381 0.00 0.00 34.04 4.08
432 437 0.610174 GATATCCGGGCTGAGATGCA 59.390 55.000 0.00 0.00 34.04 3.96
434 439 1.480137 GGAGATATCCGGGCTGAGATG 59.520 57.143 0.00 0.00 0.00 2.90
435 440 1.077828 TGGAGATATCCGGGCTGAGAT 59.922 52.381 0.00 0.00 0.00 2.75
436 441 0.482887 TGGAGATATCCGGGCTGAGA 59.517 55.000 0.00 0.00 0.00 3.27
437 442 1.480137 GATGGAGATATCCGGGCTGAG 59.520 57.143 0.00 0.00 0.00 3.35
438 443 1.077828 AGATGGAGATATCCGGGCTGA 59.922 52.381 0.00 0.00 0.00 4.26
439 444 1.480137 GAGATGGAGATATCCGGGCTG 59.520 57.143 0.00 0.00 0.00 4.85
440 445 1.077828 TGAGATGGAGATATCCGGGCT 59.922 52.381 0.00 0.00 0.00 5.19
441 446 1.480137 CTGAGATGGAGATATCCGGGC 59.520 57.143 0.00 0.00 0.00 6.13
442 447 2.106566 CCTGAGATGGAGATATCCGGG 58.893 57.143 0.00 0.00 0.00 5.73
443 448 2.106566 CCCTGAGATGGAGATATCCGG 58.893 57.143 1.12 0.00 0.00 5.14
444 449 2.106566 CCCCTGAGATGGAGATATCCG 58.893 57.143 1.12 0.00 0.00 4.18
445 450 2.476199 CCCCCTGAGATGGAGATATCC 58.524 57.143 0.00 0.00 0.00 2.59
465 470 4.985409 CGATAAGAATCTTGTAGAGTGCCC 59.015 45.833 5.64 0.00 0.00 5.36
466 471 5.593010 ACGATAAGAATCTTGTAGAGTGCC 58.407 41.667 5.64 0.00 0.00 5.01
469 474 8.749026 TCCTAACGATAAGAATCTTGTAGAGT 57.251 34.615 5.64 0.00 0.00 3.24
486 491 9.424319 GCTTGATTCTTGATTATATCCTAACGA 57.576 33.333 0.00 0.00 0.00 3.85
487 492 9.208022 TGCTTGATTCTTGATTATATCCTAACG 57.792 33.333 0.00 0.00 0.00 3.18
498 509 3.094572 CCTGGGTGCTTGATTCTTGATT 58.905 45.455 0.00 0.00 0.00 2.57
501 512 2.205022 TCCTGGGTGCTTGATTCTTG 57.795 50.000 0.00 0.00 0.00 3.02
503 514 4.591321 TTTATCCTGGGTGCTTGATTCT 57.409 40.909 0.00 0.00 0.00 2.40
504 515 6.959639 TTATTTATCCTGGGTGCTTGATTC 57.040 37.500 0.00 0.00 0.00 2.52
506 517 8.227507 AGTATTTATTTATCCTGGGTGCTTGAT 58.772 33.333 0.00 0.00 0.00 2.57
507 518 7.582719 AGTATTTATTTATCCTGGGTGCTTGA 58.417 34.615 0.00 0.00 0.00 3.02
510 521 6.467339 GGGAGTATTTATTTATCCTGGGTGCT 60.467 42.308 0.00 0.00 0.00 4.40
511 522 5.710567 GGGAGTATTTATTTATCCTGGGTGC 59.289 44.000 0.00 0.00 0.00 5.01
512 523 7.091533 AGGGAGTATTTATTTATCCTGGGTG 57.908 40.000 0.00 0.00 0.00 4.61
513 524 6.274908 GGAGGGAGTATTTATTTATCCTGGGT 59.725 42.308 0.00 0.00 0.00 4.51
514 525 6.576442 CGGAGGGAGTATTTATTTATCCTGGG 60.576 46.154 0.00 0.00 0.00 4.45
515 526 6.013639 ACGGAGGGAGTATTTATTTATCCTGG 60.014 42.308 0.00 0.00 0.00 4.45
517 528 7.179872 GGTACGGAGGGAGTATTTATTTATCCT 59.820 40.741 0.00 0.00 0.00 3.24
518 529 7.038799 TGGTACGGAGGGAGTATTTATTTATCC 60.039 40.741 0.00 0.00 0.00 2.59
519 530 7.899973 TGGTACGGAGGGAGTATTTATTTATC 58.100 38.462 0.00 0.00 0.00 1.75
520 531 7.860649 TGGTACGGAGGGAGTATTTATTTAT 57.139 36.000 0.00 0.00 0.00 1.40
521 532 7.673641 TTGGTACGGAGGGAGTATTTATTTA 57.326 36.000 0.00 0.00 0.00 1.40
522 533 6.564557 TTGGTACGGAGGGAGTATTTATTT 57.435 37.500 0.00 0.00 0.00 1.40
523 534 6.564557 TTTGGTACGGAGGGAGTATTTATT 57.435 37.500 0.00 0.00 0.00 1.40
524 535 6.564557 TTTTGGTACGGAGGGAGTATTTAT 57.435 37.500 0.00 0.00 0.00 1.40
525 536 6.564557 ATTTTGGTACGGAGGGAGTATTTA 57.435 37.500 0.00 0.00 0.00 1.40
526 537 4.914177 TTTTGGTACGGAGGGAGTATTT 57.086 40.909 0.00 0.00 0.00 1.40
527 538 5.901276 TCTATTTTGGTACGGAGGGAGTATT 59.099 40.000 0.00 0.00 0.00 1.89
528 539 5.461327 TCTATTTTGGTACGGAGGGAGTAT 58.539 41.667 0.00 0.00 0.00 2.12
529 540 4.870636 TCTATTTTGGTACGGAGGGAGTA 58.129 43.478 0.00 0.00 0.00 2.59
530 541 3.716431 TCTATTTTGGTACGGAGGGAGT 58.284 45.455 0.00 0.00 0.00 3.85
531 542 4.344102 TCATCTATTTTGGTACGGAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
532 543 4.100498 GTCATCTATTTTGGTACGGAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
533 544 4.101119 AGTCATCTATTTTGGTACGGAGGG 59.899 45.833 0.00 0.00 0.00 4.30
534 545 5.277857 AGTCATCTATTTTGGTACGGAGG 57.722 43.478 0.00 0.00 0.00 4.30
535 546 4.976731 CGAGTCATCTATTTTGGTACGGAG 59.023 45.833 0.00 0.00 0.00 4.63
536 547 4.400251 ACGAGTCATCTATTTTGGTACGGA 59.600 41.667 0.00 0.00 0.00 4.69
537 548 4.679662 ACGAGTCATCTATTTTGGTACGG 58.320 43.478 0.00 0.00 0.00 4.02
538 549 5.579718 AGACGAGTCATCTATTTTGGTACG 58.420 41.667 5.99 0.00 0.00 3.67
546 557 9.666626 CGTTCTAAAATAGACGAGTCATCTATT 57.333 33.333 14.26 14.26 46.61 1.73
547 558 8.291032 CCGTTCTAAAATAGACGAGTCATCTAT 58.709 37.037 2.87 2.87 40.41 1.98
548 559 7.496920 TCCGTTCTAAAATAGACGAGTCATCTA 59.503 37.037 0.00 0.00 33.84 1.98
549 560 6.318144 TCCGTTCTAAAATAGACGAGTCATCT 59.682 38.462 5.99 0.00 33.84 2.90
550 561 6.493116 TCCGTTCTAAAATAGACGAGTCATC 58.507 40.000 5.99 0.00 33.84 2.92
551 562 6.446781 TCCGTTCTAAAATAGACGAGTCAT 57.553 37.500 5.99 0.00 33.84 3.06
552 563 5.163683 CCTCCGTTCTAAAATAGACGAGTCA 60.164 44.000 5.99 0.00 33.84 3.41
553 564 5.272397 CCTCCGTTCTAAAATAGACGAGTC 58.728 45.833 0.00 0.00 33.84 3.36
554 565 4.097589 CCCTCCGTTCTAAAATAGACGAGT 59.902 45.833 0.00 0.00 33.84 4.18
555 566 4.337555 TCCCTCCGTTCTAAAATAGACGAG 59.662 45.833 0.00 5.33 33.84 4.18
556 567 4.272489 TCCCTCCGTTCTAAAATAGACGA 58.728 43.478 0.00 0.00 33.84 4.20
557 568 4.097589 ACTCCCTCCGTTCTAAAATAGACG 59.902 45.833 0.00 0.00 33.84 4.18
558 569 5.595257 ACTCCCTCCGTTCTAAAATAGAC 57.405 43.478 0.00 0.00 33.84 2.59
559 570 7.909485 ATTACTCCCTCCGTTCTAAAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
560 571 7.441458 CCAATTACTCCCTCCGTTCTAAAATAG 59.559 40.741 0.00 0.00 0.00 1.73
561 572 7.092757 ACCAATTACTCCCTCCGTTCTAAAATA 60.093 37.037 0.00 0.00 0.00 1.40
562 573 6.120220 CCAATTACTCCCTCCGTTCTAAAAT 58.880 40.000 0.00 0.00 0.00 1.82
563 574 5.013391 ACCAATTACTCCCTCCGTTCTAAAA 59.987 40.000 0.00 0.00 0.00 1.52
564 575 4.533311 ACCAATTACTCCCTCCGTTCTAAA 59.467 41.667 0.00 0.00 0.00 1.85
565 576 4.098894 ACCAATTACTCCCTCCGTTCTAA 58.901 43.478 0.00 0.00 0.00 2.10
566 577 3.716431 ACCAATTACTCCCTCCGTTCTA 58.284 45.455 0.00 0.00 0.00 2.10
567 578 2.547990 ACCAATTACTCCCTCCGTTCT 58.452 47.619 0.00 0.00 0.00 3.01
568 579 4.344390 AGATACCAATTACTCCCTCCGTTC 59.656 45.833 0.00 0.00 0.00 3.95
569 580 4.296056 AGATACCAATTACTCCCTCCGTT 58.704 43.478 0.00 0.00 0.00 4.44
570 581 3.896272 GAGATACCAATTACTCCCTCCGT 59.104 47.826 0.00 0.00 0.00 4.69
571 582 3.057456 CGAGATACCAATTACTCCCTCCG 60.057 52.174 0.00 0.00 0.00 4.63
572 583 3.896272 ACGAGATACCAATTACTCCCTCC 59.104 47.826 0.00 0.00 0.00 4.30
573 584 5.290386 CAACGAGATACCAATTACTCCCTC 58.710 45.833 0.00 0.00 0.00 4.30
574 585 4.443034 GCAACGAGATACCAATTACTCCCT 60.443 45.833 0.00 0.00 0.00 4.20
575 586 3.808174 GCAACGAGATACCAATTACTCCC 59.192 47.826 0.00 0.00 0.00 4.30
576 587 3.489785 CGCAACGAGATACCAATTACTCC 59.510 47.826 0.00 0.00 0.00 3.85
577 588 3.060473 GCGCAACGAGATACCAATTACTC 60.060 47.826 0.30 0.00 0.00 2.59
578 589 2.864343 GCGCAACGAGATACCAATTACT 59.136 45.455 0.30 0.00 0.00 2.24
579 590 2.605818 TGCGCAACGAGATACCAATTAC 59.394 45.455 8.16 0.00 0.00 1.89
580 591 2.894902 TGCGCAACGAGATACCAATTA 58.105 42.857 8.16 0.00 0.00 1.40
609 622 4.202346 ACCATCAAAAACTGGGTCCATTTG 60.202 41.667 7.77 7.77 36.82 2.32
621 634 3.882888 TGTGACTGAGGACCATCAAAAAC 59.117 43.478 0.00 0.00 0.00 2.43
625 638 2.639347 ACATGTGACTGAGGACCATCAA 59.361 45.455 0.00 0.00 0.00 2.57
626 639 2.234661 GACATGTGACTGAGGACCATCA 59.765 50.000 1.15 0.00 0.00 3.07
628 641 1.556911 GGACATGTGACTGAGGACCAT 59.443 52.381 1.15 0.00 0.00 3.55
636 649 2.154462 GTTTCAGGGGACATGTGACTG 58.846 52.381 1.15 8.86 0.00 3.51
637 650 1.774254 TGTTTCAGGGGACATGTGACT 59.226 47.619 1.15 0.00 0.00 3.41
669 698 5.039333 GTGCTTGGACATTATGAATTGCTC 58.961 41.667 0.00 0.00 0.00 4.26
677 706 4.460382 AGTCTTTGGTGCTTGGACATTATG 59.540 41.667 0.00 0.00 0.00 1.90
678 707 4.666512 AGTCTTTGGTGCTTGGACATTAT 58.333 39.130 0.00 0.00 0.00 1.28
710 739 8.176365 GTGATGTTGATTTGATTTCTCTGAGAG 58.824 37.037 7.52 2.28 0.00 3.20
711 740 7.662669 TGTGATGTTGATTTGATTTCTCTGAGA 59.337 33.333 2.58 2.58 0.00 3.27
713 742 7.748691 TGTGATGTTGATTTGATTTCTCTGA 57.251 32.000 0.00 0.00 0.00 3.27
714 743 7.061905 GCTTGTGATGTTGATTTGATTTCTCTG 59.938 37.037 0.00 0.00 0.00 3.35
715 744 7.088905 GCTTGTGATGTTGATTTGATTTCTCT 58.911 34.615 0.00 0.00 0.00 3.10
716 745 6.864685 TGCTTGTGATGTTGATTTGATTTCTC 59.135 34.615 0.00 0.00 0.00 2.87
717 746 6.643770 GTGCTTGTGATGTTGATTTGATTTCT 59.356 34.615 0.00 0.00 0.00 2.52
721 750 5.456548 TGTGCTTGTGATGTTGATTTGAT 57.543 34.783 0.00 0.00 0.00 2.57
722 751 4.915158 TGTGCTTGTGATGTTGATTTGA 57.085 36.364 0.00 0.00 0.00 2.69
723 752 5.613795 GCAATGTGCTTGTGATGTTGATTTG 60.614 40.000 0.00 0.00 40.96 2.32
725 754 3.991773 GCAATGTGCTTGTGATGTTGATT 59.008 39.130 0.00 0.00 40.96 2.57
726 755 3.006003 TGCAATGTGCTTGTGATGTTGAT 59.994 39.130 1.43 0.00 45.31 2.57
727 756 2.361438 TGCAATGTGCTTGTGATGTTGA 59.639 40.909 1.43 0.00 45.31 3.18
728 757 2.745102 TGCAATGTGCTTGTGATGTTG 58.255 42.857 1.43 0.00 45.31 3.33
729 758 3.322369 CATGCAATGTGCTTGTGATGTT 58.678 40.909 7.70 0.00 45.31 2.71
730 759 2.954316 CATGCAATGTGCTTGTGATGT 58.046 42.857 7.70 0.00 45.31 3.06
748 777 2.020694 GCTGCAAGAGTGTATGGGCAT 61.021 52.381 0.00 0.00 34.07 4.40
787 819 2.281484 GGCAACGGACAGAGCCAA 60.281 61.111 0.00 0.00 41.66 4.52
799 834 3.441572 AGCTATCATGACAAGTTGGCAAC 59.558 43.478 22.48 22.48 39.86 4.17
845 882 4.564406 GGAGGAAGAGAAGAGAACAATGCA 60.564 45.833 0.00 0.00 0.00 3.96
846 883 3.938334 GGAGGAAGAGAAGAGAACAATGC 59.062 47.826 0.00 0.00 0.00 3.56
847 884 5.046735 TGAGGAGGAAGAGAAGAGAACAATG 60.047 44.000 0.00 0.00 0.00 2.82
848 885 5.046663 GTGAGGAGGAAGAGAAGAGAACAAT 60.047 44.000 0.00 0.00 0.00 2.71
849 886 4.282195 GTGAGGAGGAAGAGAAGAGAACAA 59.718 45.833 0.00 0.00 0.00 2.83
850 887 3.829601 GTGAGGAGGAAGAGAAGAGAACA 59.170 47.826 0.00 0.00 0.00 3.18
851 888 3.194755 GGTGAGGAGGAAGAGAAGAGAAC 59.805 52.174 0.00 0.00 0.00 3.01
852 889 3.076785 AGGTGAGGAGGAAGAGAAGAGAA 59.923 47.826 0.00 0.00 0.00 2.87
855 892 4.890499 ATAGGTGAGGAGGAAGAGAAGA 57.110 45.455 0.00 0.00 0.00 2.87
940 1793 0.727398 CTTTTGTAGCGGCTAGGTGC 59.273 55.000 10.54 0.00 41.94 5.01
949 1802 4.058817 AGTCCAGAGAAACTTTTGTAGCG 58.941 43.478 0.00 0.00 0.00 4.26
995 1859 0.904649 CTGGGCACTGACCATGACTA 59.095 55.000 3.31 0.00 41.49 2.59
1012 1877 1.975407 CCAGTTGGGCAAGCCTCTG 60.975 63.158 11.40 15.27 36.10 3.35
1046 1924 1.143813 CCTCCCAATAGCCACCATCT 58.856 55.000 0.00 0.00 0.00 2.90
1052 1930 1.009552 TCCTCTTCCTCCCAATAGCCA 59.990 52.381 0.00 0.00 0.00 4.75
1056 1934 3.318313 GGTGATCCTCTTCCTCCCAATA 58.682 50.000 0.00 0.00 0.00 1.90
1059 1937 0.326618 GGGTGATCCTCTTCCTCCCA 60.327 60.000 0.00 0.00 32.46 4.37
1120 2117 0.601558 TTCACCGCTACTGAGGTCAC 59.398 55.000 0.00 0.00 44.59 3.67
1164 2164 2.361104 TCAAACCGGCTGCCATCC 60.361 61.111 20.29 0.00 0.00 3.51
1170 2170 3.365265 GGCACCTCAAACCGGCTG 61.365 66.667 0.00 0.00 0.00 4.85
1264 5950 1.421485 GCGTGATGCGACCTTCTTG 59.579 57.895 0.00 0.00 44.77 3.02
1373 6059 1.174712 AAAGCAGCACGGTCTTGCAT 61.175 50.000 13.79 1.71 45.62 3.96
1733 6448 6.263842 AGCTTTATTGCTGCATACACATATGT 59.736 34.615 1.84 1.41 42.33 2.29
1736 6451 6.698008 AAGCTTTATTGCTGCATACACATA 57.302 33.333 1.84 0.00 43.24 2.29
1741 6456 5.644644 AGTCAAAGCTTTATTGCTGCATAC 58.355 37.500 12.25 0.00 43.24 2.39
1743 6458 4.796038 AGTCAAAGCTTTATTGCTGCAT 57.204 36.364 12.25 0.00 43.24 3.96
1744 6459 4.589216 AAGTCAAAGCTTTATTGCTGCA 57.411 36.364 12.25 0.00 43.24 4.41
1745 6460 5.920273 TGTAAAGTCAAAGCTTTATTGCTGC 59.080 36.000 12.25 1.56 43.24 5.25
1746 6461 7.928908 TTGTAAAGTCAAAGCTTTATTGCTG 57.071 32.000 12.25 0.00 43.24 4.41
1779 7783 3.822167 TGCATGCATACCTGAATGTATGG 59.178 43.478 18.46 0.00 45.02 2.74
1821 7837 9.567848 TTAAATGAAAGTTCTCTTTTGTGTGAC 57.432 29.630 0.00 0.00 42.99 3.67
1834 7850 7.306225 GCTGAACTTGCTGTTAAATGAAAGTTC 60.306 37.037 22.93 22.93 46.97 3.01
1954 8024 7.979444 TCACTTATGTCAGAAAGGGTTAAAG 57.021 36.000 1.13 0.00 0.00 1.85
2201 8274 1.532868 CCTGTCTTGCCGAAGTGAAAG 59.467 52.381 0.00 0.00 0.00 2.62
2211 8301 2.746362 CTGATTTGACTCCTGTCTTGCC 59.254 50.000 0.00 0.00 43.29 4.52
2236 8326 5.120986 GTCAATGATCATGCTGCTATCTGAG 59.879 44.000 9.46 0.00 0.00 3.35
2400 8522 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
2401 8523 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
2402 8524 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
2403 8525 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
2404 8526 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
2405 8527 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
2406 8528 8.263940 TCTAGAAAGACAAATATTTGGGAACG 57.736 34.615 27.43 11.14 42.34 3.95
2419 8541 9.787532 CACTTGTTGAAATTTCTAGAAAGACAA 57.212 29.630 21.75 20.91 33.32 3.18
2420 8542 9.173021 TCACTTGTTGAAATTTCTAGAAAGACA 57.827 29.630 21.75 17.21 33.32 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.