Multiple sequence alignment - TraesCS5B01G344400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G344400 chr5B 100.000 2462 0 0 1 2462 527492980 527490519 0.000000e+00 4547.0
1 TraesCS5B01G344400 chr5B 84.753 892 93 18 732 1607 527601559 527600695 0.000000e+00 854.0
2 TraesCS5B01G344400 chr5B 84.624 891 96 20 732 1607 527769566 527768702 0.000000e+00 848.0
3 TraesCS5B01G344400 chr5B 90.824 534 47 2 1927 2459 527255844 527256376 0.000000e+00 713.0
4 TraesCS5B01G344400 chr5B 80.792 682 88 29 732 1398 527254862 527255515 6.120000e-136 494.0
5 TraesCS5B01G344400 chr5B 80.123 488 67 13 732 1199 527247928 527248405 1.090000e-88 337.0
6 TraesCS5B01G344400 chr5B 87.726 277 18 5 214 489 527770231 527769970 2.380000e-80 309.0
7 TraesCS5B01G344400 chr5B 79.767 257 34 13 495 734 527769881 527769626 1.170000e-38 171.0
8 TraesCS5B01G344400 chr5A 84.736 891 97 20 732 1607 548658108 548657242 0.000000e+00 856.0
9 TraesCS5B01G344400 chr5A 90.977 532 48 0 1928 2459 548504721 548505252 0.000000e+00 717.0
10 TraesCS5B01G344400 chr5A 81.166 892 111 35 732 1607 548503665 548504515 0.000000e+00 664.0
11 TraesCS5B01G344400 chr5D 84.780 887 86 24 737 1607 434688447 434689300 0.000000e+00 845.0
12 TraesCS5B01G344400 chr5D 84.382 890 101 16 732 1607 434567236 434566371 0.000000e+00 839.0
13 TraesCS5B01G344400 chr5D 84.339 862 97 17 732 1579 434600471 434599634 0.000000e+00 809.0
14 TraesCS5B01G344400 chr5D 89.662 532 55 0 1928 2459 434481090 434481621 0.000000e+00 678.0
15 TraesCS5B01G344400 chr5D 83.333 768 82 23 732 1481 434548914 434548175 0.000000e+00 667.0
16 TraesCS5B01G344400 chr5D 83.750 560 57 16 742 1291 434666564 434667099 1.310000e-137 499.0
17 TraesCS5B01G344400 chr5D 90.090 333 32 1 1021 1353 434675707 434676038 4.860000e-117 431.0
18 TraesCS5B01G344400 chr5D 77.927 521 67 28 219 707 434549594 434549090 5.180000e-72 281.0
19 TraesCS5B01G344400 chr5D 85.000 180 16 9 218 395 434666033 434666203 3.260000e-39 172.0
20 TraesCS5B01G344400 chr5D 92.035 113 9 0 44 156 434665635 434665747 2.530000e-35 159.0
21 TraesCS5B01G344400 chr5D 93.137 102 7 0 44 145 434601174 434601073 1.530000e-32 150.0
22 TraesCS5B01G344400 chr5D 81.250 192 14 11 402 572 434666317 434666507 4.270000e-28 135.0
23 TraesCS5B01G344400 chr5D 91.111 45 4 0 1377 1421 434676032 434676076 7.350000e-06 62.1
24 TraesCS5B01G344400 chr7D 78.723 141 22 7 2225 2364 571971371 571971238 1.210000e-13 87.9
25 TraesCS5B01G344400 chr7A 80.000 110 16 5 2255 2364 661275188 661275085 2.630000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G344400 chr5B 527490519 527492980 2461 True 4547.000000 4547 100.00000 1 2462 1 chr5B.!!$R1 2461
1 TraesCS5B01G344400 chr5B 527600695 527601559 864 True 854.000000 854 84.75300 732 1607 1 chr5B.!!$R2 875
2 TraesCS5B01G344400 chr5B 527254862 527256376 1514 False 603.500000 713 85.80800 732 2459 2 chr5B.!!$F2 1727
3 TraesCS5B01G344400 chr5B 527768702 527770231 1529 True 442.666667 848 84.03900 214 1607 3 chr5B.!!$R3 1393
4 TraesCS5B01G344400 chr5A 548657242 548658108 866 True 856.000000 856 84.73600 732 1607 1 chr5A.!!$R1 875
5 TraesCS5B01G344400 chr5A 548503665 548505252 1587 False 690.500000 717 86.07150 732 2459 2 chr5A.!!$F1 1727
6 TraesCS5B01G344400 chr5D 434688447 434689300 853 False 845.000000 845 84.78000 737 1607 1 chr5D.!!$F2 870
7 TraesCS5B01G344400 chr5D 434566371 434567236 865 True 839.000000 839 84.38200 732 1607 1 chr5D.!!$R1 875
8 TraesCS5B01G344400 chr5D 434481090 434481621 531 False 678.000000 678 89.66200 1928 2459 1 chr5D.!!$F1 531
9 TraesCS5B01G344400 chr5D 434599634 434601174 1540 True 479.500000 809 88.73800 44 1579 2 chr5D.!!$R3 1535
10 TraesCS5B01G344400 chr5D 434548175 434549594 1419 True 474.000000 667 80.63000 219 1481 2 chr5D.!!$R2 1262
11 TraesCS5B01G344400 chr5D 434665635 434667099 1464 False 241.250000 499 85.50875 44 1291 4 chr5D.!!$F3 1247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 1021 0.179 GATCTCAGGGTGCATTCCGT 59.821 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2843 0.474184 CCACCCGAATAGGCCAAGAT 59.526 55.0 5.01 0.0 39.21 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.078060 TGAACCTGTTCATATGTATTCAGAGA 57.922 34.615 8.58 0.00 43.90 3.10
35 36 8.708378 TGAACCTGTTCATATGTATTCAGAGAT 58.292 33.333 8.58 0.00 43.90 2.75
36 37 9.553064 GAACCTGTTCATATGTATTCAGAGATT 57.447 33.333 1.90 3.90 39.31 2.40
37 38 9.553064 AACCTGTTCATATGTATTCAGAGATTC 57.447 33.333 1.90 0.00 0.00 2.52
38 39 8.153550 ACCTGTTCATATGTATTCAGAGATTCC 58.846 37.037 1.90 0.00 0.00 3.01
39 40 8.152898 CCTGTTCATATGTATTCAGAGATTCCA 58.847 37.037 1.90 0.00 0.00 3.53
40 41 9.722184 CTGTTCATATGTATTCAGAGATTCCAT 57.278 33.333 1.90 0.00 0.00 3.41
48 49 9.941325 ATGTATTCAGAGATTCCATTCTCATAC 57.059 33.333 4.46 4.56 43.82 2.39
50 51 9.638239 GTATTCAGAGATTCCATTCTCATACTC 57.362 37.037 4.46 0.00 43.82 2.59
59 60 4.657504 TCCATTCTCATACTCCAATCTGCT 59.342 41.667 0.00 0.00 0.00 4.24
137 138 4.098349 TGTTGCAATGCCTGGATTAATCTC 59.902 41.667 14.95 6.25 0.00 2.75
145 146 5.158141 TGCCTGGATTAATCTCTAGGTGAT 58.842 41.667 22.91 0.00 0.00 3.06
156 157 2.109128 CTCTAGGTGATAGGAGGAGGCA 59.891 54.545 0.00 0.00 31.83 4.75
161 162 1.622811 GTGATAGGAGGAGGCAGGATG 59.377 57.143 0.00 0.00 40.87 3.51
200 237 7.602517 ATTTGATCTCTCCAGTTAAAAGACG 57.397 36.000 0.00 0.00 0.00 4.18
201 238 5.723672 TGATCTCTCCAGTTAAAAGACGT 57.276 39.130 0.00 0.00 0.00 4.34
202 239 6.829229 TGATCTCTCCAGTTAAAAGACGTA 57.171 37.500 0.00 0.00 0.00 3.57
203 240 6.853720 TGATCTCTCCAGTTAAAAGACGTAG 58.146 40.000 0.00 0.00 0.00 3.51
281 508 4.219288 AGTCCACTCCTGCAAAAATGATTC 59.781 41.667 0.00 0.00 0.00 2.52
289 516 8.087750 ACTCCTGCAAAAATGATTCGAATTTTA 58.912 29.630 12.81 2.72 36.46 1.52
424 759 5.661458 TGAGCTACTTGTAATCTTACAGCC 58.339 41.667 3.26 0.66 43.77 4.85
439 774 1.233019 CAGCCAAGTGTCTTGACCAG 58.767 55.000 10.54 0.00 0.00 4.00
489 840 6.145209 CGATCATGAGCTACTTGTAATCTTGG 59.855 42.308 9.64 0.00 0.00 3.61
490 841 6.299805 TCATGAGCTACTTGTAATCTTGGT 57.700 37.500 0.00 0.00 0.00 3.67
522 956 3.686726 GTGTGTGGACCATTGAAGAGATC 59.313 47.826 0.00 0.00 0.00 2.75
566 1002 5.513495 GCAACTCTCACACTAAAGTATCTCG 59.487 44.000 0.00 0.00 0.00 4.04
574 1010 6.261158 TCACACTAAAGTATCTCGATCTCAGG 59.739 42.308 0.00 0.00 0.00 3.86
575 1011 5.533154 ACACTAAAGTATCTCGATCTCAGGG 59.467 44.000 0.00 0.00 0.00 4.45
576 1012 5.533154 CACTAAAGTATCTCGATCTCAGGGT 59.467 44.000 0.00 0.00 0.00 4.34
578 1014 2.235016 AGTATCTCGATCTCAGGGTGC 58.765 52.381 0.00 0.00 0.00 5.01
579 1015 1.957177 GTATCTCGATCTCAGGGTGCA 59.043 52.381 0.00 0.00 0.00 4.57
580 1016 1.714541 ATCTCGATCTCAGGGTGCAT 58.285 50.000 0.00 0.00 0.00 3.96
582 1018 1.410517 TCTCGATCTCAGGGTGCATTC 59.589 52.381 0.00 0.00 0.00 2.67
584 1020 0.877649 CGATCTCAGGGTGCATTCCG 60.878 60.000 0.00 0.00 0.00 4.30
585 1021 0.179000 GATCTCAGGGTGCATTCCGT 59.821 55.000 0.00 0.00 0.00 4.69
588 1024 1.626321 TCTCAGGGTGCATTCCGTTAA 59.374 47.619 0.00 0.00 0.00 2.01
589 1025 2.238646 TCTCAGGGTGCATTCCGTTAAT 59.761 45.455 0.00 0.00 0.00 1.40
590 1026 3.452990 TCTCAGGGTGCATTCCGTTAATA 59.547 43.478 0.00 0.00 0.00 0.98
591 1027 3.537580 TCAGGGTGCATTCCGTTAATAC 58.462 45.455 0.00 0.00 0.00 1.89
593 1029 3.560068 CAGGGTGCATTCCGTTAATACTC 59.440 47.826 0.00 0.00 0.00 2.59
594 1030 2.876550 GGGTGCATTCCGTTAATACTCC 59.123 50.000 0.00 0.00 0.00 3.85
595 1031 2.542595 GGTGCATTCCGTTAATACTCCG 59.457 50.000 0.00 0.00 0.00 4.63
629 1075 4.016444 TCCAGCACCCAAAATGATTAGTC 58.984 43.478 0.00 0.00 0.00 2.59
641 1092 6.594788 AAATGATTAGTCTGCATGTGGTTT 57.405 33.333 0.00 0.00 0.00 3.27
650 1101 2.756829 TGCATGTGGTTTTGCAATCAG 58.243 42.857 0.00 0.00 45.30 2.90
671 1122 5.010922 TCAGAAACAGAAATGGACCCAATTG 59.989 40.000 0.00 0.00 0.00 2.32
802 1417 4.621068 GCAGTTAGCATTGCATGTTCTA 57.379 40.909 11.91 0.00 44.79 2.10
894 1525 9.983024 TCTTTCTCCCTCACTCCTATATATAAG 57.017 37.037 0.00 0.00 0.00 1.73
972 1618 2.872858 GCATTACTACACCTAGCCAAGC 59.127 50.000 0.00 0.00 0.00 4.01
983 1632 4.095483 CACCTAGCCAAGCAAGAAATACAG 59.905 45.833 0.00 0.00 0.00 2.74
1133 1805 0.598680 GAGTGCTGTGCGACTTCACT 60.599 55.000 10.84 10.84 40.31 3.41
1143 1815 1.668151 GACTTCACTGTCGGTGGCC 60.668 63.158 11.94 0.00 45.38 5.36
1225 1900 4.394078 TCGACACCGCGGTCTTCG 62.394 66.667 36.43 36.43 42.76 3.79
1237 1912 2.676822 TCTTCGGCGAGCTCCTGT 60.677 61.111 10.46 0.00 0.00 4.00
1271 1946 2.507322 GAATTCGGCTTTGCACGCGA 62.507 55.000 15.93 0.00 0.00 5.87
1291 1966 0.961753 CGATGACGGGAGGATCATGA 59.038 55.000 0.00 0.00 35.67 3.07
1335 2010 1.966451 GTACGCCCTGTGCTTGCTT 60.966 57.895 0.00 0.00 38.05 3.91
1357 2032 0.537188 GAGAGATGCCTCCGTGGAAA 59.463 55.000 0.00 0.00 40.30 3.13
1358 2033 0.250513 AGAGATGCCTCCGTGGAAAC 59.749 55.000 0.00 0.00 40.30 2.78
1407 2082 2.986306 GCCGTGCAGCAGCTTTGAT 61.986 57.895 1.76 0.00 42.74 2.57
1458 2135 1.671742 CCACCAAGTAGGCGTCTGT 59.328 57.895 0.00 0.00 43.14 3.41
1459 2136 0.034896 CCACCAAGTAGGCGTCTGTT 59.965 55.000 0.00 0.00 43.14 3.16
1460 2137 1.274167 CCACCAAGTAGGCGTCTGTTA 59.726 52.381 0.00 0.00 43.14 2.41
1461 2138 2.607187 CACCAAGTAGGCGTCTGTTAG 58.393 52.381 0.00 0.00 43.14 2.34
1462 2139 1.067071 ACCAAGTAGGCGTCTGTTAGC 60.067 52.381 0.00 0.00 43.14 3.09
1489 2166 4.982269 CTTCTGAAGAATGGCATGCAGCA 61.982 47.826 21.36 9.76 38.04 4.41
1505 2191 2.420687 GCAGCAGTAGATTTAGCCCTGT 60.421 50.000 0.00 0.00 0.00 4.00
1549 2239 7.648510 GTGAATATACAGTAGCAAGTGGTAGAC 59.351 40.741 0.00 0.00 0.00 2.59
1564 2254 2.755103 GGTAGACTGGGCAAGGAAATTG 59.245 50.000 0.00 0.00 42.20 2.32
1580 2271 7.486407 AGGAAATTGATGAAATTACCTTGCT 57.514 32.000 0.00 0.00 37.51 3.91
1596 2287 0.031857 TGCTTTTTGCGACATGGTGG 59.968 50.000 0.00 0.00 46.63 4.61
1607 2298 3.364964 GCGACATGGTGGACTTTTGTAAG 60.365 47.826 0.00 0.00 37.40 2.34
1610 2301 5.514274 ACATGGTGGACTTTTGTAAGTTG 57.486 39.130 0.00 0.00 44.51 3.16
1611 2302 4.953579 ACATGGTGGACTTTTGTAAGTTGT 59.046 37.500 0.00 0.00 44.51 3.32
1615 2306 6.181908 TGGTGGACTTTTGTAAGTTGTAACT 58.818 36.000 0.00 0.00 44.51 2.24
1617 2308 6.416514 GTGGACTTTTGTAAGTTGTAACTCG 58.583 40.000 0.00 0.00 44.51 4.18
1622 2332 9.789029 GACTTTTGTAAGTTGTAACTCGAATAC 57.211 33.333 0.00 1.97 44.51 1.89
1623 2333 9.538508 ACTTTTGTAAGTTGTAACTCGAATACT 57.461 29.630 8.88 0.00 41.85 2.12
1645 2355 7.856145 ACTAGAAAATATCTTGTTGGCAGAG 57.144 36.000 0.00 0.00 40.57 3.35
1649 2359 6.599638 AGAAAATATCTTGTTGGCAGAGGTAC 59.400 38.462 0.00 0.00 33.39 3.34
1650 2360 2.789409 ATCTTGTTGGCAGAGGTACC 57.211 50.000 2.73 2.73 0.00 3.34
1652 2362 1.771854 TCTTGTTGGCAGAGGTACCAA 59.228 47.619 15.94 0.00 43.59 3.67
1657 2367 2.787473 TGGCAGAGGTACCAAATCTG 57.213 50.000 20.28 20.28 42.70 2.90
1658 2368 1.985159 TGGCAGAGGTACCAAATCTGT 59.015 47.619 23.47 0.00 41.99 3.41
1666 2398 7.254932 GCAGAGGTACCAAATCTGTATCATTTC 60.255 40.741 23.47 5.33 41.99 2.17
1673 2405 8.641498 ACCAAATCTGTATCATTTCTTCTGTT 57.359 30.769 0.00 0.00 0.00 3.16
1675 2407 9.918630 CCAAATCTGTATCATTTCTTCTGTTTT 57.081 29.630 0.00 0.00 0.00 2.43
1685 2417 7.790027 TCATTTCTTCTGTTTTTGATTTGGGA 58.210 30.769 0.00 0.00 0.00 4.37
1688 2420 8.436046 TTTCTTCTGTTTTTGATTTGGGAATG 57.564 30.769 0.00 0.00 0.00 2.67
1700 2432 1.097232 TGGGAATGCAAGCTGAATCG 58.903 50.000 0.00 0.00 0.00 3.34
1701 2433 1.098050 GGGAATGCAAGCTGAATCGT 58.902 50.000 0.00 0.00 0.00 3.73
1702 2434 1.064654 GGGAATGCAAGCTGAATCGTC 59.935 52.381 0.00 0.00 0.00 4.20
1703 2435 1.739466 GGAATGCAAGCTGAATCGTCA 59.261 47.619 0.00 0.00 0.00 4.35
1704 2436 2.357009 GGAATGCAAGCTGAATCGTCAT 59.643 45.455 0.00 0.00 31.85 3.06
1705 2437 3.547613 GGAATGCAAGCTGAATCGTCATC 60.548 47.826 0.00 0.00 31.85 2.92
1706 2438 1.001624 TGCAAGCTGAATCGTCATCG 58.998 50.000 0.00 0.00 31.85 3.84
1708 2440 2.193447 GCAAGCTGAATCGTCATCGTA 58.807 47.619 0.00 0.00 38.33 3.43
1710 2442 3.302092 GCAAGCTGAATCGTCATCGTAAG 60.302 47.826 0.00 0.00 38.33 2.34
1712 2444 2.159240 AGCTGAATCGTCATCGTAAGCA 60.159 45.455 0.00 0.00 38.33 3.91
1723 2455 3.871006 TCATCGTAAGCATAGCAGTTTGG 59.129 43.478 0.00 0.00 37.18 3.28
1725 2457 4.459390 TCGTAAGCATAGCAGTTTGGTA 57.541 40.909 0.00 0.00 33.73 3.25
1730 2462 1.737793 GCATAGCAGTTTGGTACGCTT 59.262 47.619 0.00 0.00 36.71 4.68
1732 2464 3.560068 GCATAGCAGTTTGGTACGCTTAT 59.440 43.478 0.00 0.00 36.71 1.73
1750 2482 4.938080 CTTATGTAGCACTACCAGTCCAG 58.062 47.826 5.40 0.00 35.26 3.86
1751 2483 0.895530 TGTAGCACTACCAGTCCAGC 59.104 55.000 5.40 0.00 35.26 4.85
1752 2484 1.187087 GTAGCACTACCAGTCCAGCT 58.813 55.000 0.00 0.00 31.23 4.24
1753 2485 1.550976 GTAGCACTACCAGTCCAGCTT 59.449 52.381 0.00 0.00 29.43 3.74
1754 2486 0.322975 AGCACTACCAGTCCAGCTTG 59.677 55.000 0.00 0.00 0.00 4.01
1755 2487 1.301677 GCACTACCAGTCCAGCTTGC 61.302 60.000 0.00 0.00 0.00 4.01
1756 2488 0.035317 CACTACCAGTCCAGCTTGCA 59.965 55.000 0.00 0.00 0.00 4.08
1757 2489 0.322975 ACTACCAGTCCAGCTTGCAG 59.677 55.000 0.00 0.00 0.00 4.41
1758 2490 1.003355 TACCAGTCCAGCTTGCAGC 60.003 57.895 0.47 0.47 42.84 5.25
1767 2499 3.379445 GCTTGCAGCTGCCACCAT 61.379 61.111 34.64 0.00 38.45 3.55
1768 2500 2.571757 CTTGCAGCTGCCACCATG 59.428 61.111 34.64 14.92 41.18 3.66
1769 2501 2.203523 TTGCAGCTGCCACCATGT 60.204 55.556 34.64 0.00 41.18 3.21
1770 2502 1.812686 CTTGCAGCTGCCACCATGTT 61.813 55.000 34.64 0.00 41.18 2.71
1771 2503 1.401318 TTGCAGCTGCCACCATGTTT 61.401 50.000 34.64 0.00 41.18 2.83
1772 2504 1.373748 GCAGCTGCCACCATGTTTG 60.374 57.895 28.76 0.00 34.31 2.93
1773 2505 1.808531 GCAGCTGCCACCATGTTTGA 61.809 55.000 28.76 0.00 34.31 2.69
1774 2506 0.892755 CAGCTGCCACCATGTTTGAT 59.107 50.000 0.00 0.00 0.00 2.57
1775 2507 0.892755 AGCTGCCACCATGTTTGATG 59.107 50.000 0.00 0.00 0.00 3.07
1776 2508 0.604578 GCTGCCACCATGTTTGATGT 59.395 50.000 0.00 0.00 0.00 3.06
1777 2509 1.818060 GCTGCCACCATGTTTGATGTA 59.182 47.619 0.00 0.00 0.00 2.29
1778 2510 2.159338 GCTGCCACCATGTTTGATGTAG 60.159 50.000 0.00 0.00 0.00 2.74
1779 2511 1.818060 TGCCACCATGTTTGATGTAGC 59.182 47.619 0.00 0.00 0.00 3.58
1780 2512 1.134946 GCCACCATGTTTGATGTAGCC 59.865 52.381 0.00 0.00 0.00 3.93
1781 2513 2.445427 CCACCATGTTTGATGTAGCCA 58.555 47.619 0.00 0.00 0.00 4.75
1782 2514 2.164219 CCACCATGTTTGATGTAGCCAC 59.836 50.000 0.00 0.00 0.00 5.01
1783 2515 2.164219 CACCATGTTTGATGTAGCCACC 59.836 50.000 0.00 0.00 0.00 4.61
1784 2516 2.041620 ACCATGTTTGATGTAGCCACCT 59.958 45.455 0.00 0.00 0.00 4.00
1785 2517 3.091545 CCATGTTTGATGTAGCCACCTT 58.908 45.455 0.00 0.00 0.00 3.50
1786 2518 3.511146 CCATGTTTGATGTAGCCACCTTT 59.489 43.478 0.00 0.00 0.00 3.11
1787 2519 4.704540 CCATGTTTGATGTAGCCACCTTTA 59.295 41.667 0.00 0.00 0.00 1.85
1788 2520 5.184864 CCATGTTTGATGTAGCCACCTTTAA 59.815 40.000 0.00 0.00 0.00 1.52
1789 2521 6.295011 CCATGTTTGATGTAGCCACCTTTAAA 60.295 38.462 0.00 0.00 0.00 1.52
1790 2522 6.716934 TGTTTGATGTAGCCACCTTTAAAA 57.283 33.333 0.00 0.00 0.00 1.52
1791 2523 6.744112 TGTTTGATGTAGCCACCTTTAAAAG 58.256 36.000 0.00 0.00 0.00 2.27
1792 2524 5.385509 TTGATGTAGCCACCTTTAAAAGC 57.614 39.130 0.00 0.00 0.00 3.51
1793 2525 4.662278 TGATGTAGCCACCTTTAAAAGCT 58.338 39.130 6.84 6.84 37.58 3.74
1794 2526 5.811190 TGATGTAGCCACCTTTAAAAGCTA 58.189 37.500 0.00 5.33 35.03 3.32
1798 2530 4.100279 AGCCACCTTTAAAAGCTACACT 57.900 40.909 0.00 0.00 30.46 3.55
1799 2531 5.237236 AGCCACCTTTAAAAGCTACACTA 57.763 39.130 0.00 0.00 30.46 2.74
1800 2532 5.246307 AGCCACCTTTAAAAGCTACACTAG 58.754 41.667 0.00 0.00 30.46 2.57
1801 2533 5.001874 GCCACCTTTAAAAGCTACACTAGT 58.998 41.667 0.00 0.00 0.00 2.57
1802 2534 5.472478 GCCACCTTTAAAAGCTACACTAGTT 59.528 40.000 0.00 0.00 0.00 2.24
1803 2535 6.016527 GCCACCTTTAAAAGCTACACTAGTTT 60.017 38.462 0.00 0.00 0.00 2.66
1804 2536 7.360361 CCACCTTTAAAAGCTACACTAGTTTG 58.640 38.462 0.00 0.00 29.33 2.93
1805 2537 7.012989 CCACCTTTAAAAGCTACACTAGTTTGT 59.987 37.037 0.00 0.00 29.33 2.83
1806 2538 7.855904 CACCTTTAAAAGCTACACTAGTTTGTG 59.144 37.037 0.00 0.00 43.07 3.33
1807 2539 7.012989 ACCTTTAAAAGCTACACTAGTTTGTGG 59.987 37.037 0.00 0.00 41.84 4.17
1808 2540 7.227910 CCTTTAAAAGCTACACTAGTTTGTGGA 59.772 37.037 0.00 0.00 41.84 4.02
1809 2541 8.508883 TTTAAAAGCTACACTAGTTTGTGGAA 57.491 30.769 0.00 0.00 41.84 3.53
1810 2542 8.508883 TTAAAAGCTACACTAGTTTGTGGAAA 57.491 30.769 0.00 0.00 41.84 3.13
1811 2543 7.399245 AAAAGCTACACTAGTTTGTGGAAAA 57.601 32.000 0.00 0.00 41.84 2.29
1812 2544 6.619801 AAGCTACACTAGTTTGTGGAAAAG 57.380 37.500 0.00 0.00 41.84 2.27
1813 2545 5.063880 AGCTACACTAGTTTGTGGAAAAGG 58.936 41.667 0.00 0.00 41.84 3.11
1814 2546 4.820173 GCTACACTAGTTTGTGGAAAAGGT 59.180 41.667 0.00 0.00 41.84 3.50
1815 2547 5.049612 GCTACACTAGTTTGTGGAAAAGGTC 60.050 44.000 0.00 0.00 41.84 3.85
1816 2548 4.850680 ACACTAGTTTGTGGAAAAGGTCA 58.149 39.130 0.00 0.00 41.84 4.02
1817 2549 5.445964 ACACTAGTTTGTGGAAAAGGTCAT 58.554 37.500 0.00 0.00 41.84 3.06
1818 2550 6.597562 ACACTAGTTTGTGGAAAAGGTCATA 58.402 36.000 0.00 0.00 41.84 2.15
1819 2551 7.231467 ACACTAGTTTGTGGAAAAGGTCATAT 58.769 34.615 0.00 0.00 41.84 1.78
1820 2552 7.390718 ACACTAGTTTGTGGAAAAGGTCATATC 59.609 37.037 0.00 0.00 41.84 1.63
1821 2553 6.884836 ACTAGTTTGTGGAAAAGGTCATATCC 59.115 38.462 0.00 0.00 0.00 2.59
1822 2554 5.892348 AGTTTGTGGAAAAGGTCATATCCT 58.108 37.500 0.00 0.00 39.84 3.24
1823 2555 5.711976 AGTTTGTGGAAAAGGTCATATCCTG 59.288 40.000 0.00 0.00 37.93 3.86
1824 2556 4.927267 TGTGGAAAAGGTCATATCCTGT 57.073 40.909 0.00 0.00 37.93 4.00
1825 2557 4.588899 TGTGGAAAAGGTCATATCCTGTG 58.411 43.478 0.00 0.00 37.93 3.66
1826 2558 3.947834 GTGGAAAAGGTCATATCCTGTGG 59.052 47.826 0.00 0.00 37.93 4.17
1827 2559 3.591527 TGGAAAAGGTCATATCCTGTGGT 59.408 43.478 0.00 0.00 37.93 4.16
1828 2560 4.044065 TGGAAAAGGTCATATCCTGTGGTT 59.956 41.667 0.00 0.00 37.93 3.67
1829 2561 5.251932 TGGAAAAGGTCATATCCTGTGGTTA 59.748 40.000 0.00 0.00 37.93 2.85
1830 2562 6.069088 TGGAAAAGGTCATATCCTGTGGTTAT 60.069 38.462 0.00 0.00 37.93 1.89
1831 2563 7.128109 TGGAAAAGGTCATATCCTGTGGTTATA 59.872 37.037 0.00 0.00 37.93 0.98
1832 2564 8.164070 GGAAAAGGTCATATCCTGTGGTTATAT 58.836 37.037 0.00 0.00 37.93 0.86
1833 2565 8.924511 AAAAGGTCATATCCTGTGGTTATATG 57.075 34.615 0.00 0.00 37.93 1.78
1834 2566 7.872061 AAGGTCATATCCTGTGGTTATATGA 57.128 36.000 0.00 0.00 39.24 2.15
1835 2567 7.872061 AGGTCATATCCTGTGGTTATATGAA 57.128 36.000 5.97 0.00 41.71 2.57
1836 2568 8.454859 AGGTCATATCCTGTGGTTATATGAAT 57.545 34.615 5.97 0.00 41.71 2.57
1837 2569 8.543774 AGGTCATATCCTGTGGTTATATGAATC 58.456 37.037 5.97 3.31 41.71 2.52
1838 2570 8.321353 GGTCATATCCTGTGGTTATATGAATCA 58.679 37.037 5.97 0.00 41.71 2.57
1839 2571 9.155975 GTCATATCCTGTGGTTATATGAATCAC 57.844 37.037 5.97 0.00 41.71 3.06
1840 2572 8.034804 TCATATCCTGTGGTTATATGAATCACG 58.965 37.037 0.00 0.00 38.83 4.35
1841 2573 5.862678 TCCTGTGGTTATATGAATCACGA 57.137 39.130 0.00 0.00 0.00 4.35
1842 2574 5.597806 TCCTGTGGTTATATGAATCACGAC 58.402 41.667 0.00 0.00 0.00 4.34
1843 2575 4.444388 CCTGTGGTTATATGAATCACGACG 59.556 45.833 0.00 0.00 0.00 5.12
1844 2576 5.251601 TGTGGTTATATGAATCACGACGA 57.748 39.130 0.00 0.00 0.00 4.20
1845 2577 5.838529 TGTGGTTATATGAATCACGACGAT 58.161 37.500 0.00 0.00 35.12 3.73
1846 2578 6.972722 TGTGGTTATATGAATCACGACGATA 58.027 36.000 0.00 0.00 32.51 2.92
1847 2579 6.859508 TGTGGTTATATGAATCACGACGATAC 59.140 38.462 0.00 0.00 32.51 2.24
1848 2580 6.859508 GTGGTTATATGAATCACGACGATACA 59.140 38.462 0.00 0.00 32.51 2.29
1849 2581 7.380333 GTGGTTATATGAATCACGACGATACAA 59.620 37.037 0.00 0.00 32.51 2.41
1850 2582 7.921745 TGGTTATATGAATCACGACGATACAAA 59.078 33.333 0.00 0.00 32.51 2.83
1851 2583 8.922676 GGTTATATGAATCACGACGATACAAAT 58.077 33.333 0.00 0.00 32.51 2.32
1854 2586 5.859824 TGAATCACGACGATACAAATACG 57.140 39.130 0.00 0.00 32.51 3.06
1855 2587 5.571277 TGAATCACGACGATACAAATACGA 58.429 37.500 0.00 0.00 32.51 3.43
1856 2588 5.679792 TGAATCACGACGATACAAATACGAG 59.320 40.000 0.00 0.00 32.51 4.18
1857 2589 4.604843 TCACGACGATACAAATACGAGT 57.395 40.909 0.00 0.00 0.00 4.18
1858 2590 4.581493 TCACGACGATACAAATACGAGTC 58.419 43.478 0.00 0.00 0.00 3.36
1859 2591 3.722780 CACGACGATACAAATACGAGTCC 59.277 47.826 0.00 0.00 0.00 3.85
1860 2592 3.374988 ACGACGATACAAATACGAGTCCA 59.625 43.478 0.00 0.00 0.00 4.02
1861 2593 4.142622 ACGACGATACAAATACGAGTCCAA 60.143 41.667 0.00 0.00 0.00 3.53
1862 2594 4.203764 CGACGATACAAATACGAGTCCAAC 59.796 45.833 0.00 0.00 0.00 3.77
1863 2595 5.063180 ACGATACAAATACGAGTCCAACA 57.937 39.130 0.00 0.00 0.00 3.33
1864 2596 5.100259 ACGATACAAATACGAGTCCAACAG 58.900 41.667 0.00 0.00 0.00 3.16
1865 2597 4.026804 CGATACAAATACGAGTCCAACAGC 60.027 45.833 0.00 0.00 0.00 4.40
1866 2598 3.120321 ACAAATACGAGTCCAACAGCA 57.880 42.857 0.00 0.00 0.00 4.41
1867 2599 3.674997 ACAAATACGAGTCCAACAGCAT 58.325 40.909 0.00 0.00 0.00 3.79
1868 2600 4.827692 ACAAATACGAGTCCAACAGCATA 58.172 39.130 0.00 0.00 0.00 3.14
1869 2601 4.630069 ACAAATACGAGTCCAACAGCATAC 59.370 41.667 0.00 0.00 0.00 2.39
1870 2602 2.953466 TACGAGTCCAACAGCATACC 57.047 50.000 0.00 0.00 0.00 2.73
1871 2603 0.973632 ACGAGTCCAACAGCATACCA 59.026 50.000 0.00 0.00 0.00 3.25
1872 2604 1.346395 ACGAGTCCAACAGCATACCAA 59.654 47.619 0.00 0.00 0.00 3.67
1873 2605 2.002586 CGAGTCCAACAGCATACCAAG 58.997 52.381 0.00 0.00 0.00 3.61
1874 2606 2.353704 CGAGTCCAACAGCATACCAAGA 60.354 50.000 0.00 0.00 0.00 3.02
1875 2607 3.679917 CGAGTCCAACAGCATACCAAGAT 60.680 47.826 0.00 0.00 0.00 2.40
1876 2608 3.614092 AGTCCAACAGCATACCAAGATG 58.386 45.455 0.00 0.00 0.00 2.90
1877 2609 2.684881 GTCCAACAGCATACCAAGATGG 59.315 50.000 0.00 0.00 45.02 3.51
1892 2624 3.362399 ATGGTCGACTGCTGCCTCG 62.362 63.158 16.46 9.78 0.00 4.63
1893 2625 4.057428 GGTCGACTGCTGCCTCGT 62.057 66.667 16.46 2.04 0.00 4.18
1897 2629 1.446792 CGACTGCTGCCTCGTTGAT 60.447 57.895 8.26 0.00 0.00 2.57
1899 2631 1.078848 ACTGCTGCCTCGTTGATCC 60.079 57.895 0.00 0.00 0.00 3.36
1903 2635 1.218230 GCTGCCTCGTTGATCCGATC 61.218 60.000 1.01 1.01 36.08 3.69
1905 2637 0.752658 TGCCTCGTTGATCCGATCAT 59.247 50.000 11.90 0.00 39.39 2.45
1906 2638 1.960689 TGCCTCGTTGATCCGATCATA 59.039 47.619 11.90 1.21 39.39 2.15
1907 2639 2.029918 TGCCTCGTTGATCCGATCATAG 60.030 50.000 11.90 9.10 39.39 2.23
1908 2640 2.600731 CCTCGTTGATCCGATCATAGC 58.399 52.381 11.90 5.26 39.39 2.97
1909 2641 2.230025 CCTCGTTGATCCGATCATAGCT 59.770 50.000 11.90 0.00 39.39 3.32
1910 2642 3.240884 CTCGTTGATCCGATCATAGCTG 58.759 50.000 11.90 1.66 39.39 4.24
1911 2643 1.723542 CGTTGATCCGATCATAGCTGC 59.276 52.381 11.90 0.00 39.39 5.25
1912 2644 2.759191 GTTGATCCGATCATAGCTGCA 58.241 47.619 11.90 0.00 39.39 4.41
1913 2645 3.332919 GTTGATCCGATCATAGCTGCAT 58.667 45.455 11.90 0.00 39.39 3.96
1914 2646 4.498241 GTTGATCCGATCATAGCTGCATA 58.502 43.478 11.90 0.00 39.39 3.14
1915 2647 4.382345 TGATCCGATCATAGCTGCATAG 57.618 45.455 7.00 0.00 33.59 2.23
1916 2648 3.766051 TGATCCGATCATAGCTGCATAGT 59.234 43.478 7.00 0.00 33.59 2.12
1917 2649 3.582714 TCCGATCATAGCTGCATAGTG 57.417 47.619 1.02 0.00 0.00 2.74
1918 2650 2.232208 TCCGATCATAGCTGCATAGTGG 59.768 50.000 1.02 0.00 0.00 4.00
1919 2651 2.614779 CGATCATAGCTGCATAGTGGG 58.385 52.381 1.02 0.00 0.00 4.61
1920 2652 2.232208 CGATCATAGCTGCATAGTGGGA 59.768 50.000 1.02 0.00 0.00 4.37
1921 2653 3.594134 GATCATAGCTGCATAGTGGGAC 58.406 50.000 1.02 0.00 0.00 4.46
1922 2654 2.682594 TCATAGCTGCATAGTGGGACT 58.317 47.619 1.02 0.00 0.00 3.85
1923 2655 2.630098 TCATAGCTGCATAGTGGGACTC 59.370 50.000 1.02 0.00 0.00 3.36
1924 2656 1.032794 TAGCTGCATAGTGGGACTCG 58.967 55.000 1.02 0.00 0.00 4.18
1925 2657 0.972983 AGCTGCATAGTGGGACTCGT 60.973 55.000 1.02 0.00 0.00 4.18
1937 2669 3.038280 TGGGACTCGTATGGACAATCAT 58.962 45.455 0.00 0.00 0.00 2.45
1956 2688 3.675225 TCATTTGAAGACGCGAAGAAGAG 59.325 43.478 15.93 0.00 0.00 2.85
1968 2700 3.061965 GCGAAGAAGAGTCTGATGAAAGC 59.938 47.826 0.00 0.00 33.05 3.51
2028 2760 6.842163 CAAACTTGGTTGGACTACACATATC 58.158 40.000 0.00 0.00 0.00 1.63
2033 2765 5.030147 TGGTTGGACTACACATATCTTCCT 58.970 41.667 0.00 0.00 0.00 3.36
2046 2778 1.840737 TCTTCCTCTTCTCCCTCACG 58.159 55.000 0.00 0.00 0.00 4.35
2092 2824 1.673033 CCTCGCTTTCCACTCGAACAT 60.673 52.381 0.00 0.00 0.00 2.71
2165 2897 2.550180 GCTCCCAGTCTTGTCTTGTTTC 59.450 50.000 0.00 0.00 0.00 2.78
2167 2899 1.264288 CCCAGTCTTGTCTTGTTTCGC 59.736 52.381 0.00 0.00 0.00 4.70
2178 2910 3.056328 GTTTCGCCAGGCACTCCC 61.056 66.667 13.30 0.00 34.60 4.30
2186 2918 1.599047 CAGGCACTCCCGAGTCAAT 59.401 57.895 0.00 0.00 40.20 2.57
2187 2919 0.742281 CAGGCACTCCCGAGTCAATG 60.742 60.000 0.00 0.00 40.20 2.82
2206 2938 2.338809 TGGTGACCTCCTTGAGATGTT 58.661 47.619 2.11 0.00 0.00 2.71
2229 2961 1.106285 GGTGTCTGATTTGGATGCCC 58.894 55.000 0.00 0.00 0.00 5.36
2276 3008 1.895798 CAGCTGGAGTGAGACAAGGTA 59.104 52.381 5.57 0.00 0.00 3.08
2286 3018 1.185618 AGACAAGGTACGGCAGAGCA 61.186 55.000 0.00 0.00 0.00 4.26
2294 3026 0.107831 TACGGCAGAGCACCTTGTTT 59.892 50.000 0.00 0.00 0.00 2.83
2372 3104 3.721793 GGAATGCCCCTGATCTCAG 57.278 57.895 0.00 0.00 43.40 3.35
2379 3111 2.108075 TGCCCCTGATCTCAGTTCAAAA 59.892 45.455 6.46 0.00 42.27 2.44
2394 3126 8.394971 TCAGTTCAAAATTCTCAAGCTCATTA 57.605 30.769 0.00 0.00 0.00 1.90
2396 3128 8.295288 CAGTTCAAAATTCTCAAGCTCATTAGT 58.705 33.333 0.00 0.00 0.00 2.24
2453 3185 2.899256 GCAGAGCAGATAGAAGATCCCT 59.101 50.000 0.00 0.00 0.00 4.20
2459 3191 4.718774 AGCAGATAGAAGATCCCTTGTCAA 59.281 41.667 0.00 0.00 31.62 3.18
2460 3192 5.190528 AGCAGATAGAAGATCCCTTGTCAAA 59.809 40.000 0.00 0.00 31.62 2.69
2461 3193 5.882557 GCAGATAGAAGATCCCTTGTCAAAA 59.117 40.000 0.00 0.00 31.62 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.553064 AATCTCTGAATACATATGAACAGGTTC 57.447 33.333 10.38 5.23 39.91 3.62
11 12 9.553064 GAATCTCTGAATACATATGAACAGGTT 57.447 33.333 10.38 8.57 0.00 3.50
12 13 8.153550 GGAATCTCTGAATACATATGAACAGGT 58.846 37.037 10.38 0.00 0.00 4.00
13 14 8.152898 TGGAATCTCTGAATACATATGAACAGG 58.847 37.037 10.38 7.28 0.00 4.00
14 15 9.722184 ATGGAATCTCTGAATACATATGAACAG 57.278 33.333 10.38 12.02 0.00 3.16
19 20 9.939802 TGAGAATGGAATCTCTGAATACATATG 57.060 33.333 0.00 0.00 44.98 1.78
22 23 9.941325 GTATGAGAATGGAATCTCTGAATACAT 57.059 33.333 5.96 0.00 44.98 2.29
23 24 9.152327 AGTATGAGAATGGAATCTCTGAATACA 57.848 33.333 5.96 0.00 44.98 2.29
24 25 9.638239 GAGTATGAGAATGGAATCTCTGAATAC 57.362 37.037 5.96 5.80 44.98 1.89
25 26 8.811017 GGAGTATGAGAATGGAATCTCTGAATA 58.189 37.037 5.96 0.00 44.98 1.75
26 27 7.291885 TGGAGTATGAGAATGGAATCTCTGAAT 59.708 37.037 5.96 0.00 44.98 2.57
27 28 6.612863 TGGAGTATGAGAATGGAATCTCTGAA 59.387 38.462 5.96 0.00 44.98 3.02
28 29 6.138967 TGGAGTATGAGAATGGAATCTCTGA 58.861 40.000 5.96 0.00 44.98 3.27
29 30 6.416631 TGGAGTATGAGAATGGAATCTCTG 57.583 41.667 5.96 0.00 44.98 3.35
30 31 7.513436 AGATTGGAGTATGAGAATGGAATCTCT 59.487 37.037 5.96 0.00 44.98 3.10
31 32 7.603404 CAGATTGGAGTATGAGAATGGAATCTC 59.397 40.741 0.00 0.00 44.96 2.75
32 33 7.451732 CAGATTGGAGTATGAGAATGGAATCT 58.548 38.462 0.00 0.00 0.00 2.40
33 34 6.149142 GCAGATTGGAGTATGAGAATGGAATC 59.851 42.308 0.00 0.00 0.00 2.52
34 35 6.002704 GCAGATTGGAGTATGAGAATGGAAT 58.997 40.000 0.00 0.00 0.00 3.01
35 36 5.131642 AGCAGATTGGAGTATGAGAATGGAA 59.868 40.000 0.00 0.00 0.00 3.53
36 37 4.657504 AGCAGATTGGAGTATGAGAATGGA 59.342 41.667 0.00 0.00 0.00 3.41
37 38 4.970711 AGCAGATTGGAGTATGAGAATGG 58.029 43.478 0.00 0.00 0.00 3.16
38 39 6.301687 CAAGCAGATTGGAGTATGAGAATG 57.698 41.667 0.00 0.00 35.08 2.67
95 96 8.121305 TGCAACAGATTAATTTTACCATCACT 57.879 30.769 0.00 0.00 0.00 3.41
137 138 2.524306 CTGCCTCCTCCTATCACCTAG 58.476 57.143 0.00 0.00 0.00 3.02
145 146 0.104777 ATGCATCCTGCCTCCTCCTA 60.105 55.000 0.00 0.00 44.23 2.94
156 157 7.794041 TCAAATTAAATTTAGCCATGCATCCT 58.206 30.769 0.00 0.00 0.00 3.24
161 162 9.189723 GAGAGATCAAATTAAATTTAGCCATGC 57.810 33.333 0.00 0.00 0.00 4.06
162 163 9.688592 GGAGAGATCAAATTAAATTTAGCCATG 57.311 33.333 0.00 0.00 0.00 3.66
163 164 9.425248 TGGAGAGATCAAATTAAATTTAGCCAT 57.575 29.630 0.00 0.00 0.00 4.40
165 166 8.907885 ACTGGAGAGATCAAATTAAATTTAGCC 58.092 33.333 0.00 0.00 0.00 3.93
174 175 9.151471 CGTCTTTTAACTGGAGAGATCAAATTA 57.849 33.333 0.00 0.00 0.00 1.40
175 176 7.661847 ACGTCTTTTAACTGGAGAGATCAAATT 59.338 33.333 0.00 0.00 0.00 1.82
281 508 3.930229 TCGATGTCCTGTGGTAAAATTCG 59.070 43.478 0.00 0.00 0.00 3.34
289 516 1.852633 TGAGATCGATGTCCTGTGGT 58.147 50.000 18.91 0.00 0.00 4.16
424 759 3.797039 TCTTCACTGGTCAAGACACTTG 58.203 45.455 2.29 5.29 0.00 3.16
439 774 8.587950 CGTTATTAAGTGACAGAATCTCTTCAC 58.412 37.037 11.69 11.69 40.70 3.18
489 840 0.895530 TCCACACACCTAGCTAGCAC 59.104 55.000 18.83 0.00 0.00 4.40
490 841 0.895530 GTCCACACACCTAGCTAGCA 59.104 55.000 18.83 1.89 0.00 3.49
559 993 1.957177 TGCACCCTGAGATCGAGATAC 59.043 52.381 0.00 0.00 0.00 2.24
566 1002 0.179000 ACGGAATGCACCCTGAGATC 59.821 55.000 0.00 0.00 0.00 2.75
574 1010 2.542595 CGGAGTATTAACGGAATGCACC 59.457 50.000 0.00 6.74 37.47 5.01
575 1011 3.192466 ACGGAGTATTAACGGAATGCAC 58.808 45.455 0.00 0.00 41.94 4.57
576 1012 3.530265 ACGGAGTATTAACGGAATGCA 57.470 42.857 0.00 0.00 41.94 3.96
591 1027 5.812642 GGTGCTGGATTAATCATATACGGAG 59.187 44.000 17.07 1.50 0.00 4.63
593 1029 4.876107 GGGTGCTGGATTAATCATATACGG 59.124 45.833 17.07 5.60 0.00 4.02
594 1030 5.487433 TGGGTGCTGGATTAATCATATACG 58.513 41.667 17.07 0.30 0.00 3.06
595 1031 7.759489 TTTGGGTGCTGGATTAATCATATAC 57.241 36.000 17.07 9.88 0.00 1.47
609 1055 4.676196 GCAGACTAATCATTTTGGGTGCTG 60.676 45.833 0.00 0.00 0.00 4.41
641 1092 5.509501 GGTCCATTTCTGTTTCTGATTGCAA 60.510 40.000 0.00 0.00 0.00 4.08
650 1101 5.221422 TGTCAATTGGGTCCATTTCTGTTTC 60.221 40.000 5.42 0.00 0.00 2.78
671 1122 1.670087 CGACTGTGGAGACCATGTGTC 60.670 57.143 6.29 6.29 44.82 3.67
747 1352 7.698506 ATGTGATCTTGATTGATTTGTCTGT 57.301 32.000 0.00 0.00 0.00 3.41
802 1417 1.076485 GGGACATGGCCATGAGCTT 60.076 57.895 44.72 27.12 41.20 3.74
894 1525 2.092968 TGGTGGTGCTAATCTGATGGAC 60.093 50.000 0.00 0.00 0.00 4.02
972 1618 6.476378 TCTTTTCTCCTCCCTGTATTTCTTG 58.524 40.000 0.00 0.00 0.00 3.02
983 1632 3.767711 ACCATGTTTCTTTTCTCCTCCC 58.232 45.455 0.00 0.00 0.00 4.30
1060 1723 1.306568 GGGTGAGCCTCTTCCTCCT 60.307 63.158 0.00 0.00 34.45 3.69
1133 1805 2.350895 CCTTCATGGCCACCGACA 59.649 61.111 8.16 0.00 0.00 4.35
1143 1815 2.260247 CACACAGTGGCCCTTCATG 58.740 57.895 5.31 0.00 0.00 3.07
1225 1900 2.279120 CATCGACAGGAGCTCGCC 60.279 66.667 7.83 0.00 0.00 5.54
1237 1912 1.762957 GAATTCCTCCTGGGACATCGA 59.237 52.381 0.00 0.00 45.03 3.59
1254 1929 3.047280 TCGCGTGCAAAGCCGAAT 61.047 55.556 5.77 0.00 38.42 3.34
1271 1946 0.676184 CATGATCCTCCCGTCATCGT 59.324 55.000 0.00 0.00 32.98 3.73
1308 1983 1.226974 CAGGGCGTACTCCATGACG 60.227 63.158 11.02 0.00 40.11 4.35
1335 2010 1.039785 CCACGGAGGCATCTCTCTGA 61.040 60.000 0.00 0.00 41.44 3.27
1357 2032 4.643795 CATGAACGCCCTCATGGT 57.356 55.556 12.76 0.00 46.00 3.55
1422 2097 1.609783 GCCAAGCCCTACAGATGGT 59.390 57.895 0.00 0.00 33.63 3.55
1443 2120 1.204941 AGCTAACAGACGCCTACTTGG 59.795 52.381 0.00 0.00 39.35 3.61
1451 2128 2.600867 CAGAAGCTAAGCTAACAGACGC 59.399 50.000 0.00 0.00 38.25 5.19
1452 2129 4.098055 TCAGAAGCTAAGCTAACAGACG 57.902 45.455 0.00 0.00 38.25 4.18
1455 2132 6.036953 CCATTCTTCAGAAGCTAAGCTAACAG 59.963 42.308 5.15 0.00 38.25 3.16
1458 2135 4.878397 GCCATTCTTCAGAAGCTAAGCTAA 59.122 41.667 5.15 0.00 38.25 3.09
1459 2136 4.080919 TGCCATTCTTCAGAAGCTAAGCTA 60.081 41.667 5.15 0.00 38.25 3.32
1460 2137 3.277715 GCCATTCTTCAGAAGCTAAGCT 58.722 45.455 5.15 0.00 42.56 3.74
1461 2138 3.012518 TGCCATTCTTCAGAAGCTAAGC 58.987 45.455 5.15 6.69 37.48 3.09
1462 2139 4.497674 GCATGCCATTCTTCAGAAGCTAAG 60.498 45.833 6.36 0.00 37.48 2.18
1489 2166 5.248477 TGAACAGAACAGGGCTAAATCTACT 59.752 40.000 0.00 0.00 0.00 2.57
1549 2239 4.540359 TTTCATCAATTTCCTTGCCCAG 57.460 40.909 0.00 0.00 34.66 4.45
1564 2254 5.633182 TCGCAAAAAGCAAGGTAATTTCATC 59.367 36.000 0.00 0.00 46.13 2.92
1580 2271 1.686355 AGTCCACCATGTCGCAAAAA 58.314 45.000 0.00 0.00 0.00 1.94
1596 2287 9.789029 GTATTCGAGTTACAACTTACAAAAGTC 57.211 33.333 0.00 0.00 45.37 3.01
1615 2306 9.042008 GCCAACAAGATATTTTCTAGTATTCGA 57.958 33.333 0.00 0.00 33.05 3.71
1622 2332 6.825721 ACCTCTGCCAACAAGATATTTTCTAG 59.174 38.462 0.00 0.00 33.05 2.43
1623 2333 6.721318 ACCTCTGCCAACAAGATATTTTCTA 58.279 36.000 0.00 0.00 33.05 2.10
1624 2334 5.574188 ACCTCTGCCAACAAGATATTTTCT 58.426 37.500 0.00 0.00 35.70 2.52
1625 2335 5.904362 ACCTCTGCCAACAAGATATTTTC 57.096 39.130 0.00 0.00 0.00 2.29
1626 2336 5.652452 GGTACCTCTGCCAACAAGATATTTT 59.348 40.000 4.06 0.00 0.00 1.82
1628 2338 4.227300 TGGTACCTCTGCCAACAAGATATT 59.773 41.667 14.36 0.00 0.00 1.28
1630 2340 3.178046 TGGTACCTCTGCCAACAAGATA 58.822 45.455 14.36 0.00 0.00 1.98
1632 2342 1.429930 TGGTACCTCTGCCAACAAGA 58.570 50.000 14.36 0.00 0.00 3.02
1638 2348 1.985159 ACAGATTTGGTACCTCTGCCA 59.015 47.619 23.08 0.00 40.01 4.92
1640 2350 5.023533 TGATACAGATTTGGTACCTCTGC 57.976 43.478 23.08 11.93 40.01 4.26
1645 2355 8.616076 CAGAAGAAATGATACAGATTTGGTACC 58.384 37.037 4.43 4.43 0.00 3.34
1649 2359 9.918630 AAAACAGAAGAAATGATACAGATTTGG 57.081 29.630 0.00 0.00 0.00 3.28
1658 2368 9.709495 CCCAAATCAAAAACAGAAGAAATGATA 57.291 29.630 0.00 0.00 0.00 2.15
1666 2398 5.759273 TGCATTCCCAAATCAAAAACAGAAG 59.241 36.000 0.00 0.00 0.00 2.85
1673 2405 4.066490 CAGCTTGCATTCCCAAATCAAAA 58.934 39.130 0.00 0.00 0.00 2.44
1675 2407 2.898612 TCAGCTTGCATTCCCAAATCAA 59.101 40.909 0.00 0.00 0.00 2.57
1685 2417 2.031314 CGATGACGATTCAGCTTGCATT 59.969 45.455 0.00 0.00 42.66 3.56
1688 2420 1.002366 ACGATGACGATTCAGCTTGC 58.998 50.000 0.00 0.00 42.66 4.01
1700 2432 4.260375 CCAAACTGCTATGCTTACGATGAC 60.260 45.833 0.00 0.00 0.00 3.06
1701 2433 3.871006 CCAAACTGCTATGCTTACGATGA 59.129 43.478 0.00 0.00 0.00 2.92
1702 2434 3.623060 ACCAAACTGCTATGCTTACGATG 59.377 43.478 0.00 0.00 0.00 3.84
1703 2435 3.873910 ACCAAACTGCTATGCTTACGAT 58.126 40.909 0.00 0.00 0.00 3.73
1704 2436 3.328382 ACCAAACTGCTATGCTTACGA 57.672 42.857 0.00 0.00 0.00 3.43
1705 2437 3.000078 CGTACCAAACTGCTATGCTTACG 60.000 47.826 0.00 0.00 0.00 3.18
1706 2438 3.242316 GCGTACCAAACTGCTATGCTTAC 60.242 47.826 0.00 0.00 0.00 2.34
1708 2440 1.737793 GCGTACCAAACTGCTATGCTT 59.262 47.619 0.00 0.00 0.00 3.91
1710 2442 1.369625 AGCGTACCAAACTGCTATGC 58.630 50.000 0.00 0.00 36.59 3.14
1712 2444 4.766375 ACATAAGCGTACCAAACTGCTAT 58.234 39.130 0.00 0.00 37.10 2.97
1730 2462 2.693591 GCTGGACTGGTAGTGCTACATA 59.306 50.000 10.98 0.00 37.46 2.29
1732 2464 0.895530 GCTGGACTGGTAGTGCTACA 59.104 55.000 10.98 0.00 37.46 2.74
1751 2483 1.812686 AACATGGTGGCAGCTGCAAG 61.813 55.000 37.63 18.97 44.36 4.01
1752 2484 1.401318 AAACATGGTGGCAGCTGCAA 61.401 50.000 37.63 27.49 44.36 4.08
1753 2485 1.833492 AAACATGGTGGCAGCTGCA 60.833 52.632 37.63 22.06 44.36 4.41
1754 2486 1.373748 CAAACATGGTGGCAGCTGC 60.374 57.895 30.88 30.88 41.14 5.25
1755 2487 0.892755 ATCAAACATGGTGGCAGCTG 59.107 50.000 18.53 10.11 0.00 4.24
1756 2488 0.892755 CATCAAACATGGTGGCAGCT 59.107 50.000 18.53 0.36 0.00 4.24
1757 2489 0.604578 ACATCAAACATGGTGGCAGC 59.395 50.000 10.30 10.30 0.00 5.25
1758 2490 2.159338 GCTACATCAAACATGGTGGCAG 60.159 50.000 0.00 0.00 37.63 4.85
1759 2491 1.818060 GCTACATCAAACATGGTGGCA 59.182 47.619 0.00 0.00 37.63 4.92
1760 2492 1.134946 GGCTACATCAAACATGGTGGC 59.865 52.381 0.00 0.00 37.06 5.01
1761 2493 2.164219 GTGGCTACATCAAACATGGTGG 59.836 50.000 0.00 0.00 0.00 4.61
1762 2494 2.164219 GGTGGCTACATCAAACATGGTG 59.836 50.000 1.52 0.00 0.00 4.17
1763 2495 2.041620 AGGTGGCTACATCAAACATGGT 59.958 45.455 1.52 0.00 0.00 3.55
1764 2496 2.726821 AGGTGGCTACATCAAACATGG 58.273 47.619 1.52 0.00 0.00 3.66
1765 2497 4.789012 AAAGGTGGCTACATCAAACATG 57.211 40.909 1.52 0.00 0.00 3.21
1766 2498 6.909550 TTTAAAGGTGGCTACATCAAACAT 57.090 33.333 1.52 0.00 0.00 2.71
1767 2499 6.716934 TTTTAAAGGTGGCTACATCAAACA 57.283 33.333 1.52 0.00 0.00 2.83
1768 2500 5.633601 GCTTTTAAAGGTGGCTACATCAAAC 59.366 40.000 6.84 0.00 0.00 2.93
1769 2501 5.538433 AGCTTTTAAAGGTGGCTACATCAAA 59.462 36.000 8.70 0.00 37.93 2.69
1770 2502 5.076873 AGCTTTTAAAGGTGGCTACATCAA 58.923 37.500 8.70 0.00 37.93 2.57
1771 2503 4.662278 AGCTTTTAAAGGTGGCTACATCA 58.338 39.130 8.70 0.00 37.93 3.07
1776 2508 5.237236 AGTGTAGCTTTTAAAGGTGGCTA 57.763 39.130 18.21 6.05 39.97 3.93
1777 2509 4.100279 AGTGTAGCTTTTAAAGGTGGCT 57.900 40.909 18.21 10.60 39.97 4.75
1778 2510 5.001874 ACTAGTGTAGCTTTTAAAGGTGGC 58.998 41.667 18.21 11.62 39.97 5.01
1779 2511 7.012989 ACAAACTAGTGTAGCTTTTAAAGGTGG 59.987 37.037 18.21 5.38 39.97 4.61
1780 2512 7.855904 CACAAACTAGTGTAGCTTTTAAAGGTG 59.144 37.037 18.21 4.24 39.97 4.00
1781 2513 7.012989 CCACAAACTAGTGTAGCTTTTAAAGGT 59.987 37.037 13.94 13.94 38.51 3.50
1782 2514 7.227910 TCCACAAACTAGTGTAGCTTTTAAAGG 59.772 37.037 6.84 0.00 37.82 3.11
1783 2515 8.149973 TCCACAAACTAGTGTAGCTTTTAAAG 57.850 34.615 0.00 0.00 37.82 1.85
1784 2516 8.508883 TTCCACAAACTAGTGTAGCTTTTAAA 57.491 30.769 0.00 0.00 37.82 1.52
1785 2517 8.508883 TTTCCACAAACTAGTGTAGCTTTTAA 57.491 30.769 0.00 0.00 37.82 1.52
1786 2518 8.508883 TTTTCCACAAACTAGTGTAGCTTTTA 57.491 30.769 0.00 0.00 37.82 1.52
1787 2519 7.399245 TTTTCCACAAACTAGTGTAGCTTTT 57.601 32.000 0.00 0.00 37.82 2.27
1788 2520 6.039382 CCTTTTCCACAAACTAGTGTAGCTTT 59.961 38.462 0.00 0.00 37.82 3.51
1789 2521 5.531287 CCTTTTCCACAAACTAGTGTAGCTT 59.469 40.000 0.00 0.00 37.82 3.74
1790 2522 5.063880 CCTTTTCCACAAACTAGTGTAGCT 58.936 41.667 0.00 0.00 37.82 3.32
1791 2523 4.820173 ACCTTTTCCACAAACTAGTGTAGC 59.180 41.667 0.00 0.00 37.82 3.58
1792 2524 6.053005 TGACCTTTTCCACAAACTAGTGTAG 58.947 40.000 0.00 0.00 37.82 2.74
1793 2525 5.991861 TGACCTTTTCCACAAACTAGTGTA 58.008 37.500 0.00 0.00 37.82 2.90
1794 2526 4.850680 TGACCTTTTCCACAAACTAGTGT 58.149 39.130 0.00 0.00 37.82 3.55
1795 2527 7.148239 GGATATGACCTTTTCCACAAACTAGTG 60.148 40.741 0.00 0.00 39.21 2.74
1796 2528 6.884836 GGATATGACCTTTTCCACAAACTAGT 59.115 38.462 0.00 0.00 0.00 2.57
1797 2529 7.066284 CAGGATATGACCTTTTCCACAAACTAG 59.934 40.741 0.00 0.00 38.32 2.57
1798 2530 6.884295 CAGGATATGACCTTTTCCACAAACTA 59.116 38.462 0.00 0.00 38.32 2.24
1799 2531 5.711976 CAGGATATGACCTTTTCCACAAACT 59.288 40.000 0.00 0.00 38.32 2.66
1800 2532 5.476945 ACAGGATATGACCTTTTCCACAAAC 59.523 40.000 0.00 0.00 38.32 2.93
1801 2533 5.476599 CACAGGATATGACCTTTTCCACAAA 59.523 40.000 0.00 0.00 38.32 2.83
1802 2534 5.009631 CACAGGATATGACCTTTTCCACAA 58.990 41.667 0.00 0.00 38.32 3.33
1803 2535 4.567537 CCACAGGATATGACCTTTTCCACA 60.568 45.833 0.00 0.00 38.32 4.17
1804 2536 3.947834 CCACAGGATATGACCTTTTCCAC 59.052 47.826 0.00 0.00 38.32 4.02
1805 2537 3.591527 ACCACAGGATATGACCTTTTCCA 59.408 43.478 0.00 0.00 38.32 3.53
1806 2538 4.236527 ACCACAGGATATGACCTTTTCC 57.763 45.455 0.00 0.00 38.32 3.13
1807 2539 9.003658 CATATAACCACAGGATATGACCTTTTC 57.996 37.037 0.00 0.00 38.32 2.29
1808 2540 8.723365 TCATATAACCACAGGATATGACCTTTT 58.277 33.333 0.00 0.00 37.55 2.27
1809 2541 8.275187 TCATATAACCACAGGATATGACCTTT 57.725 34.615 0.00 0.00 37.55 3.11
1810 2542 7.872061 TCATATAACCACAGGATATGACCTT 57.128 36.000 0.00 0.00 37.55 3.50
1811 2543 7.872061 TTCATATAACCACAGGATATGACCT 57.128 36.000 6.84 0.00 40.54 3.85
1812 2544 8.321353 TGATTCATATAACCACAGGATATGACC 58.679 37.037 6.84 0.00 40.54 4.02
1813 2545 9.155975 GTGATTCATATAACCACAGGATATGAC 57.844 37.037 6.84 0.71 40.54 3.06
1814 2546 8.034804 CGTGATTCATATAACCACAGGATATGA 58.965 37.037 0.00 0.00 39.60 2.15
1815 2547 8.034804 TCGTGATTCATATAACCACAGGATATG 58.965 37.037 0.00 0.00 35.67 1.78
1816 2548 8.035394 GTCGTGATTCATATAACCACAGGATAT 58.965 37.037 0.00 0.00 0.00 1.63
1817 2549 7.375834 GTCGTGATTCATATAACCACAGGATA 58.624 38.462 0.00 0.00 0.00 2.59
1818 2550 6.223852 GTCGTGATTCATATAACCACAGGAT 58.776 40.000 0.00 0.00 0.00 3.24
1819 2551 5.597806 GTCGTGATTCATATAACCACAGGA 58.402 41.667 0.00 0.00 0.00 3.86
1820 2552 4.444388 CGTCGTGATTCATATAACCACAGG 59.556 45.833 0.00 0.00 0.00 4.00
1821 2553 5.278604 TCGTCGTGATTCATATAACCACAG 58.721 41.667 0.00 0.00 0.00 3.66
1822 2554 5.251601 TCGTCGTGATTCATATAACCACA 57.748 39.130 0.00 0.00 0.00 4.17
1823 2555 6.859508 TGTATCGTCGTGATTCATATAACCAC 59.140 38.462 0.00 0.00 38.57 4.16
1824 2556 6.972722 TGTATCGTCGTGATTCATATAACCA 58.027 36.000 0.00 0.00 38.57 3.67
1825 2557 7.862741 TTGTATCGTCGTGATTCATATAACC 57.137 36.000 0.00 0.00 38.57 2.85
1828 2560 9.269415 CGTATTTGTATCGTCGTGATTCATATA 57.731 33.333 0.00 3.40 38.57 0.86
1829 2561 8.019094 TCGTATTTGTATCGTCGTGATTCATAT 58.981 33.333 0.00 4.15 38.57 1.78
1830 2562 7.354257 TCGTATTTGTATCGTCGTGATTCATA 58.646 34.615 0.00 0.00 38.57 2.15
1831 2563 6.203647 TCGTATTTGTATCGTCGTGATTCAT 58.796 36.000 0.00 0.00 38.57 2.57
1832 2564 5.571277 TCGTATTTGTATCGTCGTGATTCA 58.429 37.500 0.00 0.00 38.57 2.57
1833 2565 5.680229 ACTCGTATTTGTATCGTCGTGATTC 59.320 40.000 0.00 0.00 38.57 2.52
1834 2566 5.575957 ACTCGTATTTGTATCGTCGTGATT 58.424 37.500 0.00 0.00 38.57 2.57
1835 2567 5.165911 ACTCGTATTTGTATCGTCGTGAT 57.834 39.130 0.00 0.00 41.30 3.06
1836 2568 4.494690 GGACTCGTATTTGTATCGTCGTGA 60.495 45.833 0.00 0.00 0.00 4.35
1837 2569 3.722780 GGACTCGTATTTGTATCGTCGTG 59.277 47.826 0.00 0.00 0.00 4.35
1838 2570 3.374988 TGGACTCGTATTTGTATCGTCGT 59.625 43.478 0.00 0.00 0.00 4.34
1839 2571 3.943958 TGGACTCGTATTTGTATCGTCG 58.056 45.455 0.00 0.00 0.00 5.12
1840 2572 5.097529 TGTTGGACTCGTATTTGTATCGTC 58.902 41.667 0.00 0.00 0.00 4.20
1841 2573 5.063180 TGTTGGACTCGTATTTGTATCGT 57.937 39.130 0.00 0.00 0.00 3.73
1842 2574 4.026804 GCTGTTGGACTCGTATTTGTATCG 60.027 45.833 0.00 0.00 0.00 2.92
1843 2575 4.868171 TGCTGTTGGACTCGTATTTGTATC 59.132 41.667 0.00 0.00 0.00 2.24
1844 2576 4.827692 TGCTGTTGGACTCGTATTTGTAT 58.172 39.130 0.00 0.00 0.00 2.29
1845 2577 4.260139 TGCTGTTGGACTCGTATTTGTA 57.740 40.909 0.00 0.00 0.00 2.41
1846 2578 3.120321 TGCTGTTGGACTCGTATTTGT 57.880 42.857 0.00 0.00 0.00 2.83
1847 2579 4.034048 GGTATGCTGTTGGACTCGTATTTG 59.966 45.833 0.00 0.00 0.00 2.32
1848 2580 4.189231 GGTATGCTGTTGGACTCGTATTT 58.811 43.478 0.00 0.00 0.00 1.40
1849 2581 3.196901 TGGTATGCTGTTGGACTCGTATT 59.803 43.478 0.00 0.00 0.00 1.89
1850 2582 2.764010 TGGTATGCTGTTGGACTCGTAT 59.236 45.455 0.00 0.00 0.00 3.06
1851 2583 2.172679 TGGTATGCTGTTGGACTCGTA 58.827 47.619 0.00 0.00 0.00 3.43
1852 2584 0.973632 TGGTATGCTGTTGGACTCGT 59.026 50.000 0.00 0.00 0.00 4.18
1853 2585 2.002586 CTTGGTATGCTGTTGGACTCG 58.997 52.381 0.00 0.00 0.00 4.18
1854 2586 3.334583 TCTTGGTATGCTGTTGGACTC 57.665 47.619 0.00 0.00 0.00 3.36
1855 2587 3.614092 CATCTTGGTATGCTGTTGGACT 58.386 45.455 0.00 0.00 0.00 3.85
1856 2588 2.684881 CCATCTTGGTATGCTGTTGGAC 59.315 50.000 0.00 0.00 31.35 4.02
1857 2589 3.003394 CCATCTTGGTATGCTGTTGGA 57.997 47.619 0.00 0.00 31.35 3.53
1869 2601 1.364626 GCAGCAGTCGACCATCTTGG 61.365 60.000 13.01 0.00 45.02 3.61
1870 2602 1.364626 GGCAGCAGTCGACCATCTTG 61.365 60.000 13.01 4.52 0.00 3.02
1871 2603 1.078848 GGCAGCAGTCGACCATCTT 60.079 57.895 13.01 0.00 0.00 2.40
1872 2604 1.954362 GAGGCAGCAGTCGACCATCT 61.954 60.000 13.01 3.87 0.00 2.90
1873 2605 1.520342 GAGGCAGCAGTCGACCATC 60.520 63.158 13.01 0.00 0.00 3.51
1874 2606 2.581354 GAGGCAGCAGTCGACCAT 59.419 61.111 13.01 0.00 0.00 3.55
1875 2607 4.056125 CGAGGCAGCAGTCGACCA 62.056 66.667 13.01 0.00 38.50 4.02
1876 2608 3.575351 AACGAGGCAGCAGTCGACC 62.575 63.158 20.19 0.00 39.53 4.79
1877 2609 2.049063 AACGAGGCAGCAGTCGAC 60.049 61.111 20.19 7.70 39.53 4.20
1878 2610 1.877576 ATCAACGAGGCAGCAGTCGA 61.878 55.000 20.19 1.23 39.53 4.20
1879 2611 1.416813 GATCAACGAGGCAGCAGTCG 61.417 60.000 13.46 13.46 42.04 4.18
1880 2612 1.086634 GGATCAACGAGGCAGCAGTC 61.087 60.000 0.00 0.00 0.00 3.51
1881 2613 1.078848 GGATCAACGAGGCAGCAGT 60.079 57.895 0.00 0.00 0.00 4.40
1882 2614 2.169789 CGGATCAACGAGGCAGCAG 61.170 63.158 0.00 0.00 35.47 4.24
1883 2615 2.125552 CGGATCAACGAGGCAGCA 60.126 61.111 0.00 0.00 35.47 4.41
1884 2616 2.184322 TCGGATCAACGAGGCAGC 59.816 61.111 0.00 0.00 38.06 5.25
1892 2624 2.759191 TGCAGCTATGATCGGATCAAC 58.241 47.619 23.29 15.62 43.50 3.18
1893 2625 3.690475 ATGCAGCTATGATCGGATCAA 57.310 42.857 23.29 12.27 43.50 2.57
1897 2629 2.232208 CCACTATGCAGCTATGATCGGA 59.768 50.000 0.00 0.00 0.00 4.55
1899 2631 2.232208 TCCCACTATGCAGCTATGATCG 59.768 50.000 0.00 0.00 0.00 3.69
1903 2635 2.608998 CGAGTCCCACTATGCAGCTATG 60.609 54.545 0.00 0.00 0.00 2.23
1905 2637 1.032794 CGAGTCCCACTATGCAGCTA 58.967 55.000 0.00 0.00 0.00 3.32
1906 2638 0.972983 ACGAGTCCCACTATGCAGCT 60.973 55.000 0.00 0.00 0.00 4.24
1907 2639 0.744874 TACGAGTCCCACTATGCAGC 59.255 55.000 0.00 0.00 0.00 5.25
1908 2640 2.288457 CCATACGAGTCCCACTATGCAG 60.288 54.545 0.00 0.00 0.00 4.41
1909 2641 1.686587 CCATACGAGTCCCACTATGCA 59.313 52.381 0.00 0.00 0.00 3.96
1910 2642 1.961394 TCCATACGAGTCCCACTATGC 59.039 52.381 0.00 0.00 0.00 3.14
1911 2643 2.956333 TGTCCATACGAGTCCCACTATG 59.044 50.000 0.00 0.00 0.00 2.23
1912 2644 3.308035 TGTCCATACGAGTCCCACTAT 57.692 47.619 0.00 0.00 0.00 2.12
1913 2645 2.812836 TGTCCATACGAGTCCCACTA 57.187 50.000 0.00 0.00 0.00 2.74
1914 2646 1.933021 TTGTCCATACGAGTCCCACT 58.067 50.000 0.00 0.00 0.00 4.00
1915 2647 2.167693 TGATTGTCCATACGAGTCCCAC 59.832 50.000 0.00 0.00 0.00 4.61
1916 2648 2.462723 TGATTGTCCATACGAGTCCCA 58.537 47.619 0.00 0.00 0.00 4.37
1917 2649 3.753294 ATGATTGTCCATACGAGTCCC 57.247 47.619 0.00 0.00 0.00 4.46
1918 2650 5.116180 TCAAATGATTGTCCATACGAGTCC 58.884 41.667 0.00 0.00 37.79 3.85
1919 2651 6.535150 TCTTCAAATGATTGTCCATACGAGTC 59.465 38.462 0.00 0.00 37.79 3.36
1920 2652 6.313905 GTCTTCAAATGATTGTCCATACGAGT 59.686 38.462 0.00 0.00 37.79 4.18
1921 2653 6.508563 CGTCTTCAAATGATTGTCCATACGAG 60.509 42.308 0.00 0.00 37.79 4.18
1922 2654 5.290885 CGTCTTCAAATGATTGTCCATACGA 59.709 40.000 0.00 0.00 37.79 3.43
1923 2655 5.492854 CGTCTTCAAATGATTGTCCATACG 58.507 41.667 0.00 0.00 37.79 3.06
1924 2656 5.266242 GCGTCTTCAAATGATTGTCCATAC 58.734 41.667 0.00 0.00 37.79 2.39
1925 2657 4.033932 CGCGTCTTCAAATGATTGTCCATA 59.966 41.667 0.00 0.00 37.79 2.74
1937 2669 3.050619 GACTCTTCTTCGCGTCTTCAAA 58.949 45.455 5.77 0.00 0.00 2.69
1968 2700 6.323482 TGGATTCTAGTCTCAAGAAGATGAGG 59.677 42.308 4.63 0.00 45.55 3.86
2055 2787 0.983378 AGGGACCGGGGAATGAAGAG 60.983 60.000 6.32 0.00 0.00 2.85
2092 2824 5.518848 AGATTCATGTTGCACAAAAGTGA 57.481 34.783 0.00 0.00 0.00 3.41
2111 2843 0.474184 CCACCCGAATAGGCCAAGAT 59.526 55.000 5.01 0.00 39.21 2.40
2115 2847 0.912487 AGAACCACCCGAATAGGCCA 60.912 55.000 5.01 0.00 39.21 5.36
2167 2899 1.903877 ATTGACTCGGGAGTGCCTGG 61.904 60.000 5.98 0.00 42.66 4.45
2186 2918 2.030027 ACATCTCAAGGAGGTCACCA 57.970 50.000 0.00 0.00 33.30 4.17
2187 2919 3.077359 CAAACATCTCAAGGAGGTCACC 58.923 50.000 0.00 0.00 38.05 4.02
2206 2938 3.084039 GCATCCAAATCAGACACCTCAA 58.916 45.455 0.00 0.00 0.00 3.02
2229 2961 2.353803 CCCAGGTCTAGTTGGTCTTTCG 60.354 54.545 8.96 0.00 32.40 3.46
2276 3008 1.152963 AAACAAGGTGCTCTGCCGT 60.153 52.632 0.00 0.00 0.00 5.68
2286 3018 1.342174 CTGCCAGCAATCAAACAAGGT 59.658 47.619 0.00 0.00 0.00 3.50
2368 3100 6.309712 TGAGCTTGAGAATTTTGAACTGAG 57.690 37.500 0.00 0.00 0.00 3.35
2372 3104 8.292448 TCACTAATGAGCTTGAGAATTTTGAAC 58.708 33.333 0.00 0.00 0.00 3.18
2379 3111 7.337167 AGTTGATCACTAATGAGCTTGAGAAT 58.663 34.615 0.00 0.00 42.02 2.40
2394 3126 4.973168 TGCTTTACCTCAAGTTGATCACT 58.027 39.130 5.91 0.00 37.30 3.41
2396 3128 5.947228 CTTGCTTTACCTCAAGTTGATCA 57.053 39.130 5.91 0.00 36.01 2.92
2428 3160 4.321452 GGATCTTCTATCTGCTCTGCTCAG 60.321 50.000 0.00 0.00 0.00 3.35
2432 3164 2.899256 AGGGATCTTCTATCTGCTCTGC 59.101 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.