Multiple sequence alignment - TraesCS5B01G342600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G342600 chr5B 100.000 2487 0 0 1 2487 526667166 526669652 0.000000e+00 4593.0
1 TraesCS5B01G342600 chr5B 86.784 227 19 4 1688 1913 526674912 526675128 2.470000e-60 243.0
2 TraesCS5B01G342600 chr5B 76.327 245 44 12 1040 1274 528570100 528570340 4.350000e-23 119.0
3 TraesCS5B01G342600 chr5D 96.313 1519 47 5 878 2394 433196855 433198366 0.000000e+00 2486.0
4 TraesCS5B01G342600 chr5D 97.235 868 17 5 8 869 433191461 433192327 0.000000e+00 1463.0
5 TraesCS5B01G342600 chr5D 85.306 735 85 17 874 1601 433331910 433332628 0.000000e+00 737.0
6 TraesCS5B01G342600 chr5D 96.703 91 3 0 2397 2487 449149548 449149458 4.280000e-33 152.0
7 TraesCS5B01G342600 chr5D 76.860 242 48 5 1040 1274 435258820 435259060 2.010000e-26 130.0
8 TraesCS5B01G342600 chr5D 75.207 242 52 6 1040 1274 435255560 435255800 9.410000e-20 108.0
9 TraesCS5B01G342600 chr5D 97.778 45 0 1 747 791 433192367 433192324 2.650000e-10 76.8
10 TraesCS5B01G342600 chr5D 91.837 49 3 1 1606 1653 433218861 433218909 1.600000e-07 67.6
11 TraesCS5B01G342600 chr4B 78.310 355 67 10 1740 2086 623726238 623725886 1.160000e-53 220.0
12 TraesCS5B01G342600 chr4B 96.703 91 3 0 2397 2487 151526120 151526030 4.280000e-33 152.0
13 TraesCS5B01G342600 chr4B 96.703 91 3 0 2397 2487 151526632 151526542 4.280000e-33 152.0
14 TraesCS5B01G342600 chr4B 96.703 91 3 0 2397 2487 151527034 151526944 4.280000e-33 152.0
15 TraesCS5B01G342600 chr7D 96.703 91 3 0 2397 2487 141164695 141164605 4.280000e-33 152.0
16 TraesCS5B01G342600 chr4D 96.703 91 3 0 2397 2487 354587425 354587335 4.280000e-33 152.0
17 TraesCS5B01G342600 chr3D 96.703 91 3 0 2397 2487 74906446 74906356 4.280000e-33 152.0
18 TraesCS5B01G342600 chr3D 96.703 91 3 0 2397 2487 213378658 213378568 4.280000e-33 152.0
19 TraesCS5B01G342600 chr3D 96.703 91 3 0 2397 2487 589252983 589253073 4.280000e-33 152.0
20 TraesCS5B01G342600 chr5A 78.226 248 41 11 1040 1277 549196084 549196328 1.990000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G342600 chr5B 526667166 526669652 2486 False 4593 4593 100.000 1 2487 1 chr5B.!!$F1 2486
1 TraesCS5B01G342600 chr5D 433196855 433198366 1511 False 2486 2486 96.313 878 2394 1 chr5D.!!$F2 1516
2 TraesCS5B01G342600 chr5D 433191461 433192327 866 False 1463 1463 97.235 8 869 1 chr5D.!!$F1 861
3 TraesCS5B01G342600 chr5D 433331910 433332628 718 False 737 737 85.306 874 1601 1 chr5D.!!$F4 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.97504 CCTAGAGAGTGCACCCAGCT 60.975 60.0 14.63 8.7 45.94 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 1748 1.708341 AAAACCAAGCAGCATGAGGT 58.292 45.0 0.0 0.0 39.69 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.071699 TGGCAGTTGACACTTAGGACC 59.928 52.381 0.00 0.00 0.00 4.46
39 40 2.290323 GCAGTTGACACTTAGGACCCAT 60.290 50.000 0.00 0.00 0.00 4.00
210 211 0.975040 CCTAGAGAGTGCACCCAGCT 60.975 60.000 14.63 8.70 45.94 4.24
349 350 6.170506 GTTGGAGTGATTTCAGTACCATGTA 58.829 40.000 0.00 0.00 31.46 2.29
353 354 7.344612 TGGAGTGATTTCAGTACCATGTATAGT 59.655 37.037 0.00 0.00 28.80 2.12
491 497 3.798878 GCTTGAACAAAGAGTGGAAAAGC 59.201 43.478 0.00 0.00 38.24 3.51
527 533 3.366396 ACCATGTCTAGTACACCCTCTG 58.634 50.000 0.00 0.00 42.09 3.35
557 564 8.447833 CAAATATAAGACGTCTTGGCAGTTTTA 58.552 33.333 35.24 16.26 37.40 1.52
630 637 7.148738 CCATATTATTACTGTCAGTAGCTTGCG 60.149 40.741 12.39 1.72 31.47 4.85
700 707 4.300189 TGGAACCTGTCGACAAATTTTG 57.700 40.909 20.49 6.48 0.00 2.44
711 718 3.305110 GACAAATTTTGCTACACACCGG 58.695 45.455 9.04 0.00 0.00 5.28
802 809 6.038161 CCAAATAACAATATTCTGCTGTCGGA 59.962 38.462 0.00 0.00 31.28 4.55
803 810 7.415095 CCAAATAACAATATTCTGCTGTCGGAA 60.415 37.037 0.00 0.00 41.44 4.30
869 876 7.335627 TCTTCACTTGTTTACTGGGGTATATG 58.664 38.462 0.00 0.00 0.00 1.78
870 877 6.630203 TCACTTGTTTACTGGGGTATATGT 57.370 37.500 0.00 0.00 0.00 2.29
871 878 7.736881 TCACTTGTTTACTGGGGTATATGTA 57.263 36.000 0.00 0.00 0.00 2.29
872 879 7.558604 TCACTTGTTTACTGGGGTATATGTAC 58.441 38.462 0.00 0.00 0.00 2.90
1310 1318 3.186047 GTTGGCGTCGTGGATCGG 61.186 66.667 0.00 0.00 40.32 4.18
1461 1472 4.506288 GTGTTGGTACTTGATGTTTTTGGC 59.494 41.667 0.00 0.00 0.00 4.52
1466 1477 4.521256 GGTACTTGATGTTTTTGGCTGGTA 59.479 41.667 0.00 0.00 0.00 3.25
1605 1617 3.611766 AAGTCTTGGTGTTATCCTCCG 57.388 47.619 0.00 0.00 0.00 4.63
1669 1681 6.377327 TTTTCTTCCTAGTCTGCACTTTTG 57.623 37.500 0.00 0.00 33.62 2.44
1679 1691 2.703536 TCTGCACTTTTGGTCCACTCTA 59.296 45.455 0.00 0.00 0.00 2.43
1720 1732 7.422399 GTCCAGTCTATGTCAGTCTTATTCTC 58.578 42.308 0.00 0.00 0.00 2.87
1736 1748 6.787458 TCTTATTCTCCCATTATGGCAGTCTA 59.213 38.462 5.57 0.00 35.79 2.59
1767 1779 5.562113 GCTGCTTGGTTTTACATTCGTAACT 60.562 40.000 0.00 0.00 37.33 2.24
1905 1917 1.753930 CATGCTAGCACATGGTTCCA 58.246 50.000 22.07 0.00 43.05 3.53
1907 1919 1.533625 TGCTAGCACATGGTTCCAAC 58.466 50.000 14.93 0.00 0.00 3.77
1923 1936 3.360867 TCCAACCGGTGCATAATTCAAT 58.639 40.909 8.52 0.00 0.00 2.57
1930 1943 6.692486 ACCGGTGCATAATTCAATTTGTTTA 58.308 32.000 6.12 0.00 0.00 2.01
1974 1987 5.277538 GCCATTTCTCTAGGCTAATTCAACG 60.278 44.000 0.00 0.00 44.92 4.10
2032 2045 7.826260 AAAACACTGTTTATTGAACCAACTG 57.174 32.000 7.59 0.00 37.45 3.16
2050 2063 6.710744 ACCAACTGATCTTAGTGTTTTACTGG 59.289 38.462 0.00 0.00 40.65 4.00
2076 2089 2.206576 AAATCTGAGGGCTTGTCCAC 57.793 50.000 0.00 0.00 36.21 4.02
2114 2127 6.783708 TTTTTGGGACACTCATTTGTAACT 57.216 33.333 0.00 0.00 39.29 2.24
2115 2128 7.883391 TTTTTGGGACACTCATTTGTAACTA 57.117 32.000 0.00 0.00 39.29 2.24
2116 2129 7.504924 TTTTGGGACACTCATTTGTAACTAG 57.495 36.000 0.00 0.00 39.29 2.57
2117 2130 5.818678 TGGGACACTCATTTGTAACTAGT 57.181 39.130 0.00 0.00 0.00 2.57
2118 2131 5.547465 TGGGACACTCATTTGTAACTAGTG 58.453 41.667 0.00 0.00 42.53 2.74
2126 2139 7.062371 CACTCATTTGTAACTAGTGTCTAGTGC 59.938 40.741 9.71 7.27 34.28 4.40
2128 2141 7.611770 TCATTTGTAACTAGTGTCTAGTGCAT 58.388 34.615 9.71 0.00 0.00 3.96
2134 2147 5.440234 ACTAGTGTCTAGTGCATAATCCG 57.560 43.478 8.39 0.00 0.00 4.18
2138 2151 3.491267 GTGTCTAGTGCATAATCCGCTTC 59.509 47.826 0.00 0.00 0.00 3.86
2161 2174 4.443621 GTTTCTAGTACCAGATTCCCTGC 58.556 47.826 0.00 0.00 41.57 4.85
2197 2210 5.460419 CGCAGGTTCTATCTGTGTTTATCTC 59.540 44.000 0.00 0.00 37.80 2.75
2208 2221 8.723942 ATCTGTGTTTATCTCGCTTTCTTAAT 57.276 30.769 0.00 0.00 0.00 1.40
2228 2241 4.640771 ATCACTTCCTTACTTTCTGCCA 57.359 40.909 0.00 0.00 0.00 4.92
2234 2247 5.425539 ACTTCCTTACTTTCTGCCATAGCTA 59.574 40.000 0.00 0.00 40.80 3.32
2270 2283 2.356535 GCTTCCTCCAGATTCCATGTGT 60.357 50.000 0.00 0.00 0.00 3.72
2379 2393 7.867403 TGTTTTCTAATTCAGTCAAAATCCAGC 59.133 33.333 0.00 0.00 0.00 4.85
2380 2394 7.765695 TTTCTAATTCAGTCAAAATCCAGCT 57.234 32.000 0.00 0.00 0.00 4.24
2394 2408 2.196595 TCCAGCTGCCATAGTACCTTT 58.803 47.619 8.66 0.00 0.00 3.11
2395 2409 2.576191 TCCAGCTGCCATAGTACCTTTT 59.424 45.455 8.66 0.00 0.00 2.27
2396 2410 3.010138 TCCAGCTGCCATAGTACCTTTTT 59.990 43.478 8.66 0.00 0.00 1.94
2397 2411 4.226394 TCCAGCTGCCATAGTACCTTTTTA 59.774 41.667 8.66 0.00 0.00 1.52
2398 2412 4.947388 CCAGCTGCCATAGTACCTTTTTAA 59.053 41.667 8.66 0.00 0.00 1.52
2399 2413 5.066505 CCAGCTGCCATAGTACCTTTTTAAG 59.933 44.000 8.66 0.00 0.00 1.85
2400 2414 4.640647 AGCTGCCATAGTACCTTTTTAAGC 59.359 41.667 0.00 0.00 0.00 3.09
2401 2415 4.202020 GCTGCCATAGTACCTTTTTAAGCC 60.202 45.833 0.00 0.00 0.00 4.35
2402 2416 4.924625 TGCCATAGTACCTTTTTAAGCCA 58.075 39.130 0.00 0.00 0.00 4.75
2403 2417 4.947388 TGCCATAGTACCTTTTTAAGCCAG 59.053 41.667 0.00 0.00 0.00 4.85
2404 2418 4.202020 GCCATAGTACCTTTTTAAGCCAGC 60.202 45.833 0.00 0.00 0.00 4.85
2405 2419 4.947388 CCATAGTACCTTTTTAAGCCAGCA 59.053 41.667 0.00 0.00 0.00 4.41
2406 2420 5.417580 CCATAGTACCTTTTTAAGCCAGCAA 59.582 40.000 0.00 0.00 0.00 3.91
2407 2421 6.071616 CCATAGTACCTTTTTAAGCCAGCAAA 60.072 38.462 0.00 0.00 0.00 3.68
2408 2422 5.196341 AGTACCTTTTTAAGCCAGCAAAC 57.804 39.130 0.00 0.00 0.00 2.93
2409 2423 3.092334 ACCTTTTTAAGCCAGCAAACG 57.908 42.857 0.00 0.00 0.00 3.60
2410 2424 2.429250 ACCTTTTTAAGCCAGCAAACGT 59.571 40.909 0.00 0.00 0.00 3.99
2411 2425 3.049912 CCTTTTTAAGCCAGCAAACGTC 58.950 45.455 0.00 0.00 0.00 4.34
2412 2426 2.392933 TTTTAAGCCAGCAAACGTCG 57.607 45.000 0.00 0.00 0.00 5.12
2413 2427 1.584175 TTTAAGCCAGCAAACGTCGA 58.416 45.000 0.00 0.00 0.00 4.20
2414 2428 0.863144 TTAAGCCAGCAAACGTCGAC 59.137 50.000 5.18 5.18 0.00 4.20
2415 2429 1.279527 TAAGCCAGCAAACGTCGACG 61.280 55.000 34.58 34.58 46.33 5.12
2427 2441 2.013286 CGTCGACGTTTTCCCAAAAG 57.987 50.000 29.08 0.00 34.11 2.27
2428 2442 1.328374 CGTCGACGTTTTCCCAAAAGT 59.672 47.619 29.08 0.00 37.31 2.66
2429 2443 2.598205 CGTCGACGTTTTCCCAAAAGTC 60.598 50.000 29.08 4.32 43.86 3.01
2430 2444 2.610833 GTCGACGTTTTCCCAAAAGTCT 59.389 45.455 0.00 0.00 44.63 3.24
2431 2445 3.064408 GTCGACGTTTTCCCAAAAGTCTT 59.936 43.478 0.00 0.00 44.63 3.01
2432 2446 3.690628 TCGACGTTTTCCCAAAAGTCTTT 59.309 39.130 10.61 0.00 44.63 2.52
2433 2447 3.789224 CGACGTTTTCCCAAAAGTCTTTG 59.211 43.478 0.00 0.00 44.63 2.77
2434 2448 4.673320 CGACGTTTTCCCAAAAGTCTTTGT 60.673 41.667 0.00 0.00 44.63 2.83
2435 2449 5.447548 CGACGTTTTCCCAAAAGTCTTTGTA 60.448 40.000 0.00 0.00 44.63 2.41
2436 2450 5.886992 ACGTTTTCCCAAAAGTCTTTGTAG 58.113 37.500 0.00 0.00 40.38 2.74
2437 2451 5.648960 ACGTTTTCCCAAAAGTCTTTGTAGA 59.351 36.000 0.00 0.00 40.38 2.59
2450 2464 6.487689 GTCTTTGTAGACCTCTTTCCAATG 57.512 41.667 0.00 0.00 44.15 2.82
2451 2465 5.412904 GTCTTTGTAGACCTCTTTCCAATGG 59.587 44.000 0.00 0.00 44.15 3.16
2452 2466 5.309543 TCTTTGTAGACCTCTTTCCAATGGA 59.690 40.000 0.00 0.00 0.00 3.41
2453 2467 5.576563 TTGTAGACCTCTTTCCAATGGAA 57.423 39.130 11.23 11.23 40.27 3.53
2484 2498 7.475771 TTTTGTGTAATTCCAAATGTGAAGC 57.524 32.000 0.00 0.00 31.20 3.86
2485 2499 5.781210 TGTGTAATTCCAAATGTGAAGCA 57.219 34.783 0.00 0.00 0.00 3.91
2486 2500 6.154203 TGTGTAATTCCAAATGTGAAGCAA 57.846 33.333 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.290323 GGTCCTAAGTGTCAACTGCCAT 60.290 50.000 0.00 0.00 36.51 4.40
18 19 1.071699 TGGGTCCTAAGTGTCAACTGC 59.928 52.381 0.00 0.00 36.51 4.40
36 37 7.442364 AGTGATATCATTCGTACAAAAGGATGG 59.558 37.037 9.02 0.00 30.53 3.51
39 40 6.695713 CGAGTGATATCATTCGTACAAAAGGA 59.304 38.462 31.34 0.00 46.48 3.36
210 211 4.416516 TCTCAGTCTCAACCCAATAGTGA 58.583 43.478 0.00 0.00 0.00 3.41
349 350 9.429359 CTTGAAGATCTAACTGAACAACACTAT 57.571 33.333 0.00 0.00 0.00 2.12
353 354 6.826668 TCCTTGAAGATCTAACTGAACAACA 58.173 36.000 0.00 0.00 0.00 3.33
400 402 3.009363 TCCACATGGAAATTGAGAGCAGA 59.991 43.478 0.00 0.00 42.18 4.26
491 497 6.179906 AGACATGGTACTGAAATATGGGAG 57.820 41.667 0.00 0.00 0.00 4.30
527 533 5.353123 TGCCAAGACGTCTTATATTTGGAAC 59.647 40.000 29.28 14.54 37.79 3.62
557 564 6.042897 ACCTAGCAAACTACTACCTGTTTTCT 59.957 38.462 0.00 0.00 34.60 2.52
630 637 0.398318 ACTTCCTCCAGTGAAGGCAC 59.602 55.000 0.00 0.00 42.79 5.01
700 707 0.535335 TCAAGATCCCGGTGTGTAGC 59.465 55.000 0.00 0.00 0.00 3.58
711 718 0.942962 CATTCCAGCGCTCAAGATCC 59.057 55.000 7.13 0.00 0.00 3.36
739 746 4.406003 AGGGATATTGTACTGACCTGACAC 59.594 45.833 0.00 0.00 0.00 3.67
871 878 9.341078 TGATGCAATGTGTAAATAGATGTATGT 57.659 29.630 0.00 0.00 0.00 2.29
872 879 9.603298 GTGATGCAATGTGTAAATAGATGTATG 57.397 33.333 0.00 0.00 0.00 2.39
1461 1472 2.413112 CACACAAGCGTCTTCATACCAG 59.587 50.000 0.00 0.00 0.00 4.00
1466 1477 2.289072 ACTAGCACACAAGCGTCTTCAT 60.289 45.455 0.00 0.00 40.15 2.57
1669 1681 6.547930 AGAAAAGGATAACTAGAGTGGACC 57.452 41.667 0.00 0.00 0.00 4.46
1679 1691 5.310857 AGACTGGACCAAGAAAAGGATAACT 59.689 40.000 0.00 0.00 0.00 2.24
1720 1732 2.705658 TGAGGTAGACTGCCATAATGGG 59.294 50.000 12.54 0.00 38.19 4.00
1736 1748 1.708341 AAAACCAAGCAGCATGAGGT 58.292 45.000 0.00 0.00 39.69 3.85
1767 1779 3.499338 AGATTCAGAACCAATGCAACCA 58.501 40.909 0.00 0.00 0.00 3.67
1812 1824 5.526111 ACGTATACAAACAAACAAGCTCACT 59.474 36.000 3.32 0.00 0.00 3.41
1905 1917 5.146010 ACAAATTGAATTATGCACCGGTT 57.854 34.783 2.97 0.00 0.00 4.44
1907 1919 7.769272 ATAAACAAATTGAATTATGCACCGG 57.231 32.000 0.00 0.00 0.00 5.28
1923 1936 9.522804 CAAGGCTTTGTACTACAAATAAACAAA 57.477 29.630 13.58 0.00 45.79 2.83
1930 1943 3.509967 GGCCAAGGCTTTGTACTACAAAT 59.490 43.478 13.58 0.00 45.79 2.32
1951 1964 5.817816 ACGTTGAATTAGCCTAGAGAAATGG 59.182 40.000 0.00 0.00 0.00 3.16
1974 1987 7.981789 TCACTTTCCTATATCTCACATCAACAC 59.018 37.037 0.00 0.00 0.00 3.32
2023 2036 8.283291 CAGTAAAACACTAAGATCAGTTGGTTC 58.717 37.037 0.00 0.00 34.98 3.62
2050 2063 6.772716 TGGACAAGCCCTCAGATTTATAAATC 59.227 38.462 24.71 24.71 39.59 2.17
2107 2120 8.195436 GGATTATGCACTAGACACTAGTTACAA 58.805 37.037 8.46 2.91 0.00 2.41
2113 2126 4.022762 AGCGGATTATGCACTAGACACTAG 60.023 45.833 0.00 0.00 33.85 2.57
2114 2127 3.889538 AGCGGATTATGCACTAGACACTA 59.110 43.478 0.00 0.00 33.85 2.74
2115 2128 2.695666 AGCGGATTATGCACTAGACACT 59.304 45.455 0.00 0.00 33.85 3.55
2116 2129 3.099267 AGCGGATTATGCACTAGACAC 57.901 47.619 0.00 0.00 33.85 3.67
2117 2130 3.717707 GAAGCGGATTATGCACTAGACA 58.282 45.455 0.00 0.00 33.85 3.41
2118 2131 2.726760 CGAAGCGGATTATGCACTAGAC 59.273 50.000 0.00 0.00 33.85 2.59
2119 2132 2.361119 ACGAAGCGGATTATGCACTAGA 59.639 45.455 0.00 0.00 33.85 2.43
2126 2139 5.401674 GGTACTAGAAACGAAGCGGATTATG 59.598 44.000 0.00 0.00 0.00 1.90
2128 2141 4.398988 TGGTACTAGAAACGAAGCGGATTA 59.601 41.667 0.00 0.00 0.00 1.75
2134 2147 4.804665 GGAATCTGGTACTAGAAACGAAGC 59.195 45.833 13.39 0.00 0.00 3.86
2138 2151 4.683832 CAGGGAATCTGGTACTAGAAACG 58.316 47.826 13.39 0.00 39.76 3.60
2178 2191 7.489757 AGAAAGCGAGATAAACACAGATAGAAC 59.510 37.037 0.00 0.00 0.00 3.01
2197 2210 6.969828 AGTAAGGAAGTGATTAAGAAAGCG 57.030 37.500 0.00 0.00 0.00 4.68
2208 2221 4.640771 ATGGCAGAAAGTAAGGAAGTGA 57.359 40.909 0.00 0.00 0.00 3.41
2270 2283 6.180472 GGAGGAAGAAACCATTGATGTAGAA 58.820 40.000 0.00 0.00 0.00 2.10
2352 2365 9.748708 CTGGATTTTGACTGAATTAGAAAACAA 57.251 29.630 0.00 0.00 0.00 2.83
2379 2393 4.947388 TGGCTTAAAAAGGTACTATGGCAG 59.053 41.667 0.00 0.00 38.49 4.85
2380 2394 4.924625 TGGCTTAAAAAGGTACTATGGCA 58.075 39.130 0.00 0.00 38.49 4.92
2394 2408 1.262151 GTCGACGTTTGCTGGCTTAAA 59.738 47.619 0.00 0.00 0.00 1.52
2395 2409 0.863144 GTCGACGTTTGCTGGCTTAA 59.137 50.000 0.00 0.00 0.00 1.85
2396 2410 1.279527 CGTCGACGTTTGCTGGCTTA 61.280 55.000 29.08 0.00 34.11 3.09
2397 2411 2.594962 CGTCGACGTTTGCTGGCTT 61.595 57.895 29.08 0.00 34.11 4.35
2398 2412 3.036084 CGTCGACGTTTGCTGGCT 61.036 61.111 29.08 0.00 34.11 4.75
2408 2422 1.328374 ACTTTTGGGAAAACGTCGACG 59.672 47.619 34.58 34.58 46.33 5.12
2409 2423 2.610833 AGACTTTTGGGAAAACGTCGAC 59.389 45.455 5.18 5.18 35.55 4.20
2410 2424 2.908916 AGACTTTTGGGAAAACGTCGA 58.091 42.857 0.00 0.00 35.55 4.20
2411 2425 3.685836 AAGACTTTTGGGAAAACGTCG 57.314 42.857 0.00 0.00 35.55 5.12
2412 2426 4.740268 ACAAAGACTTTTGGGAAAACGTC 58.260 39.130 0.00 0.92 46.33 4.34
2413 2427 4.794278 ACAAAGACTTTTGGGAAAACGT 57.206 36.364 0.00 0.00 46.33 3.99
2414 2428 6.126568 TCTACAAAGACTTTTGGGAAAACG 57.873 37.500 0.00 0.00 46.33 3.60
2427 2441 8.174255 TTCCATTGGAAAGAGGTCTACAAAGAC 61.174 40.741 15.83 0.00 43.79 3.01
2428 2442 5.309543 TCCATTGGAAAGAGGTCTACAAAGA 59.690 40.000 1.94 0.00 0.00 2.52
2429 2443 5.560724 TCCATTGGAAAGAGGTCTACAAAG 58.439 41.667 1.94 0.00 0.00 2.77
2430 2444 5.576563 TCCATTGGAAAGAGGTCTACAAA 57.423 39.130 1.94 0.00 0.00 2.83
2431 2445 5.576563 TTCCATTGGAAAGAGGTCTACAA 57.423 39.130 15.83 0.00 38.93 2.41
2432 2446 5.576563 TTTCCATTGGAAAGAGGTCTACA 57.423 39.130 23.89 1.29 45.42 2.74
2459 2473 7.550551 TGCTTCACATTTGGAATTACACAAAAA 59.449 29.630 0.00 0.00 39.69 1.94
2460 2474 7.044181 TGCTTCACATTTGGAATTACACAAAA 58.956 30.769 0.00 0.00 39.69 2.44
2461 2475 6.577103 TGCTTCACATTTGGAATTACACAAA 58.423 32.000 0.00 0.00 40.44 2.83
2462 2476 6.154203 TGCTTCACATTTGGAATTACACAA 57.846 33.333 0.00 0.00 0.00 3.33
2463 2477 5.781210 TGCTTCACATTTGGAATTACACA 57.219 34.783 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.