Multiple sequence alignment - TraesCS5B01G341900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G341900 chr5B 100.000 6747 0 0 1 6747 526594709 526587963 0.000000e+00 12460.0
1 TraesCS5B01G341900 chr5B 87.140 1353 135 18 286 1622 526609434 526608105 0.000000e+00 1498.0
2 TraesCS5B01G341900 chr5B 87.797 295 11 12 6330 6607 432957249 432956963 8.440000e-84 322.0
3 TraesCS5B01G341900 chr5B 87.119 295 13 12 6330 6607 82563964 82563678 1.830000e-80 311.0
4 TraesCS5B01G341900 chr5B 87.119 295 13 12 6330 6607 645657426 645657712 1.830000e-80 311.0
5 TraesCS5B01G341900 chr5B 86.780 295 14 12 6330 6607 76672257 76672543 8.500000e-79 305.0
6 TraesCS5B01G341900 chr5B 87.330 221 21 4 6040 6260 82564134 82563921 5.230000e-61 246.0
7 TraesCS5B01G341900 chr5B 87.097 217 21 4 6044 6260 432957415 432957206 8.740000e-59 239.0
8 TraesCS5B01G341900 chr5B 86.425 221 23 4 6040 6260 645657256 645657469 1.130000e-57 235.0
9 TraesCS5B01G341900 chr5B 100.000 111 0 0 6211 6321 526588441 526588331 8.870000e-49 206.0
10 TraesCS5B01G341900 chr5B 100.000 111 0 0 6269 6379 526588499 526588389 8.870000e-49 206.0
11 TraesCS5B01G341900 chr5B 87.356 174 12 2 1 164 526609611 526609438 2.480000e-44 191.0
12 TraesCS5B01G341900 chr5B 94.667 75 3 1 6674 6747 432956953 432956879 1.540000e-21 115.0
13 TraesCS5B01G341900 chr5B 94.667 75 3 1 6674 6747 645657722 645657796 1.540000e-21 115.0
14 TraesCS5B01G341900 chr5B 92.000 75 5 1 6674 6747 76672553 76672627 3.330000e-18 104.0
15 TraesCS5B01G341900 chr5B 92.000 75 5 1 6674 6747 82563668 82563594 3.330000e-18 104.0
16 TraesCS5B01G341900 chr5B 100.000 53 0 0 6327 6379 526588499 526588447 1.550000e-16 99.0
17 TraesCS5B01G341900 chr5B 97.059 34 0 1 6622 6655 432956971 432956939 1.000000e-03 56.5
18 TraesCS5B01G341900 chr5B 100.000 30 0 0 6626 6655 645657707 645657736 1.000000e-03 56.5
19 TraesCS5B01G341900 chr5D 94.228 1767 65 23 4509 6260 433023502 433021758 0.000000e+00 2663.0
20 TraesCS5B01G341900 chr5D 92.152 1478 51 26 1717 3182 433026143 433024719 0.000000e+00 2026.0
21 TraesCS5B01G341900 chr5D 92.447 1218 55 16 3336 4529 433024725 433023521 0.000000e+00 1705.0
22 TraesCS5B01G341900 chr5D 86.376 1468 149 23 275 1715 433027626 433026183 0.000000e+00 1555.0
23 TraesCS5B01G341900 chr5D 87.456 287 22 4 1 275 433027942 433027658 1.090000e-82 318.0
24 TraesCS5B01G341900 chr5D 89.714 175 18 0 3164 3338 461072590 461072764 2.450000e-54 224.0
25 TraesCS5B01G341900 chr4B 87.774 2004 149 42 4035 5982 516861330 516859367 0.000000e+00 2255.0
26 TraesCS5B01G341900 chr4B 84.656 756 85 16 2432 3178 516862811 516862078 0.000000e+00 725.0
27 TraesCS5B01G341900 chr4B 81.135 652 90 18 3340 3981 516862076 516861448 6.080000e-135 492.0
28 TraesCS5B01G341900 chr4B 91.329 173 15 0 3165 3337 28724132 28724304 3.150000e-58 237.0
29 TraesCS5B01G341900 chr4B 87.940 199 9 7 1939 2133 516863373 516863186 3.170000e-53 220.0
30 TraesCS5B01G341900 chr4D 87.264 2010 157 45 4035 5982 419107769 419105797 0.000000e+00 2202.0
31 TraesCS5B01G341900 chr4D 85.205 757 82 16 2430 3178 419109251 419108517 0.000000e+00 750.0
32 TraesCS5B01G341900 chr4D 81.595 652 87 19 3340 3981 419108515 419107887 6.040000e-140 508.0
33 TraesCS5B01G341900 chr4D 84.653 202 11 7 1956 2150 419109806 419109618 4.160000e-42 183.0
34 TraesCS5B01G341900 chr4A 86.366 2083 191 44 4080 6107 46048252 46050296 0.000000e+00 2187.0
35 TraesCS5B01G341900 chr4A 86.389 720 75 13 2430 3139 46046711 46047417 0.000000e+00 765.0
36 TraesCS5B01G341900 chr4A 81.529 628 87 17 3337 3959 46047445 46048048 2.190000e-134 490.0
37 TraesCS5B01G341900 chr4A 92.121 165 13 0 3173 3337 150653310 150653474 4.070000e-57 233.0
38 TraesCS5B01G341900 chr4A 85.222 203 14 5 1936 2133 46046136 46046327 1.920000e-45 195.0
39 TraesCS5B01G341900 chr5A 91.120 1464 80 24 1735 3182 547651327 547649898 0.000000e+00 1938.0
40 TraesCS5B01G341900 chr5A 94.019 1254 56 8 3906 5142 547648783 547647532 0.000000e+00 1882.0
41 TraesCS5B01G341900 chr5A 90.700 1129 64 24 5140 6258 547647470 547646373 0.000000e+00 1465.0
42 TraesCS5B01G341900 chr5A 85.240 1416 151 31 276 1672 547652811 547651435 0.000000e+00 1404.0
43 TraesCS5B01G341900 chr5A 86.667 555 52 8 276 827 547665937 547665402 4.500000e-166 595.0
44 TraesCS5B01G341900 chr5A 92.593 405 29 1 3504 3907 547649271 547648867 1.260000e-161 580.0
45 TraesCS5B01G341900 chr5A 79.380 645 69 31 5013 5643 3309376 3308782 4.900000e-106 396.0
46 TraesCS5B01G341900 chr5A 84.932 292 25 4 1 275 547653130 547652841 1.850000e-70 278.0
47 TraesCS5B01G341900 chr5A 84.965 286 30 5 1 275 547666250 547665967 1.850000e-70 278.0
48 TraesCS5B01G341900 chr5A 91.358 162 14 0 3176 3337 414775661 414775822 8.810000e-54 222.0
49 TraesCS5B01G341900 chr5A 78.509 228 34 11 6390 6607 547646342 547646120 1.180000e-27 135.0
50 TraesCS5B01G341900 chr5A 92.308 91 6 1 3502 3591 547649411 547649321 1.970000e-25 128.0
51 TraesCS5B01G341900 chr5A 91.209 91 7 1 3502 3591 547649342 547649252 9.190000e-24 122.0
52 TraesCS5B01G341900 chr5A 95.522 67 2 1 3526 3591 547649456 547649390 9.250000e-19 106.0
53 TraesCS5B01G341900 chr5A 100.000 34 0 0 6622 6655 547646129 547646096 5.650000e-06 63.9
54 TraesCS5B01G341900 chr3B 81.496 762 100 19 2430 3178 818294226 818293493 7.540000e-164 588.0
55 TraesCS5B01G341900 chr3B 86.036 222 20 6 6041 6260 737695179 737695391 1.890000e-55 228.0
56 TraesCS5B01G341900 chr3A 86.538 468 44 9 2718 3182 740914043 740913592 1.310000e-136 497.0
57 TraesCS5B01G341900 chr3A 88.475 295 9 11 6330 6607 24623871 24624157 3.900000e-87 333.0
58 TraesCS5B01G341900 chr3A 91.908 173 13 1 3168 3340 726768960 726769131 2.430000e-59 241.0
59 TraesCS5B01G341900 chr3A 86.099 223 20 6 6040 6260 24623701 24623914 5.260000e-56 230.0
60 TraesCS5B01G341900 chr3A 93.333 75 4 1 6674 6747 24624167 24624241 7.150000e-20 110.0
61 TraesCS5B01G341900 chr3A 100.000 30 0 0 6626 6655 24624152 24624181 1.000000e-03 56.5
62 TraesCS5B01G341900 chrUn 86.102 295 16 12 6330 6607 244631471 244631185 1.840000e-75 294.0
63 TraesCS5B01G341900 chrUn 92.000 75 5 1 6674 6747 244631175 244631101 3.330000e-18 104.0
64 TraesCS5B01G341900 chrUn 97.059 34 0 1 6622 6655 244631193 244631161 1.000000e-03 56.5
65 TraesCS5B01G341900 chr2B 90.099 202 13 4 6408 6607 3365700 3365896 8.680000e-64 255.0
66 TraesCS5B01G341900 chr2B 87.156 218 17 6 6045 6260 3365430 3365638 3.150000e-58 237.0
67 TraesCS5B01G341900 chr2B 90.419 167 16 0 3175 3341 477809629 477809463 3.170000e-53 220.0
68 TraesCS5B01G341900 chr2B 93.333 75 4 1 6674 6747 3365906 3365980 7.150000e-20 110.0
69 TraesCS5B01G341900 chr2B 100.000 30 0 0 6626 6655 3365891 3365920 1.000000e-03 56.5
70 TraesCS5B01G341900 chr3D 78.240 409 64 15 2430 2820 608388582 608388983 8.740000e-59 239.0
71 TraesCS5B01G341900 chr1B 86.099 223 20 7 6040 6260 31000602 31000389 5.260000e-56 230.0
72 TraesCS5B01G341900 chr1B 85.973 221 24 4 6040 6260 652544335 652544548 5.260000e-56 230.0
73 TraesCS5B01G341900 chr1B 89.655 174 14 3 3166 3339 67537435 67537604 1.140000e-52 219.0
74 TraesCS5B01G341900 chr1B 87.097 186 6 8 6330 6500 652544505 652544687 1.920000e-45 195.0
75 TraesCS5B01G341900 chr1B 86.702 188 6 9 6329 6500 592416232 592416416 2.480000e-44 191.0
76 TraesCS5B01G341900 chr6D 90.964 166 15 0 3172 3337 93646222 93646387 2.450000e-54 224.0
77 TraesCS5B01G341900 chr7B 89.205 176 16 3 3176 3350 697560963 697560790 4.100000e-52 217.0
78 TraesCS5B01G341900 chr7B 88.321 137 5 3 1997 2133 703905669 703905794 3.260000e-33 154.0
79 TraesCS5B01G341900 chr7B 90.476 105 7 2 6505 6607 558945289 558945186 1.180000e-27 135.0
80 TraesCS5B01G341900 chr7B 93.333 75 4 1 6674 6747 558945176 558945102 7.150000e-20 110.0
81 TraesCS5B01G341900 chr7B 97.059 34 0 1 6622 6655 558945194 558945162 1.000000e-03 56.5
82 TraesCS5B01G341900 chr2A 88.043 184 17 3 6077 6260 68924684 68924862 5.300000e-51 213.0
83 TraesCS5B01G341900 chr2A 83.582 201 15 9 1949 2146 21840651 21840466 9.000000e-39 172.0
84 TraesCS5B01G341900 chr2D 84.043 188 16 5 1949 2133 566786777 566786601 1.160000e-37 169.0
85 TraesCS5B01G341900 chr7A 82.979 188 17 6 1949 2133 156459873 156460048 9.060000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G341900 chr5B 526587963 526594709 6746 True 12460.000000 12460 100.000000 1 6747 1 chr5B.!!$R1 6746
1 TraesCS5B01G341900 chr5B 526608105 526609611 1506 True 844.500000 1498 87.248000 1 1622 2 chr5B.!!$R5 1621
2 TraesCS5B01G341900 chr5B 82563594 82564134 540 True 220.333333 311 88.816333 6040 6747 3 chr5B.!!$R2 707
3 TraesCS5B01G341900 chr5D 433021758 433027942 6184 True 1653.400000 2663 90.531800 1 6260 5 chr5D.!!$R1 6259
4 TraesCS5B01G341900 chr4B 516859367 516863373 4006 True 923.000000 2255 85.376250 1939 5982 4 chr4B.!!$R1 4043
5 TraesCS5B01G341900 chr4D 419105797 419109806 4009 True 910.750000 2202 84.679250 1956 5982 4 chr4D.!!$R1 4026
6 TraesCS5B01G341900 chr4A 46046136 46050296 4160 False 909.250000 2187 84.876500 1936 6107 4 chr4A.!!$F2 4171
7 TraesCS5B01G341900 chr5A 547646096 547653130 7034 True 736.536364 1938 90.559273 1 6655 11 chr5A.!!$R2 6654
8 TraesCS5B01G341900 chr5A 547665402 547666250 848 True 436.500000 595 85.816000 1 827 2 chr5A.!!$R3 826
9 TraesCS5B01G341900 chr5A 3308782 3309376 594 True 396.000000 396 79.380000 5013 5643 1 chr5A.!!$R1 630
10 TraesCS5B01G341900 chr3B 818293493 818294226 733 True 588.000000 588 81.496000 2430 3178 1 chr3B.!!$R1 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 444 0.618968 GTGGGAGAGGAGGGACATGT 60.619 60.000 0.00 0.0 0.00 3.21 F
1318 1387 0.034574 TGCAACCGCCAACCATCTAT 60.035 50.000 0.00 0.0 37.32 1.98 F
1470 1540 0.461961 GGACTCCTTGAGGACGATGG 59.538 60.000 0.00 0.0 39.78 3.51 F
2394 2655 1.200020 GTGTGCAATGGGCTTACTCAC 59.800 52.381 0.00 0.0 45.15 3.51 F
2579 2911 1.745087 GGAATGGTATGTGTGTGCTGG 59.255 52.381 0.00 0.0 0.00 4.85 F
2858 3197 2.354199 GCTTGTTTCTAGATCTGGCAGC 59.646 50.000 10.34 0.0 0.00 5.25 F
4053 5032 1.745653 GGACCTGGCAGTAATTTCAGC 59.254 52.381 14.43 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1519 0.034380 ATCGTCCTCAAGGAGTCCGA 60.034 55.000 11.27 11.27 46.49 4.55 R
2484 2815 0.534652 GATGCCTGCCAGGAGATGAC 60.535 60.000 16.85 0.00 37.67 3.06 R
2528 2860 1.202533 AGTGTGGTCTTGACCAAGTCG 60.203 52.381 22.30 0.00 42.10 4.18 R
3321 3664 2.885616 TGAAGTACTCCCTCCGTTTCT 58.114 47.619 0.00 0.00 0.00 2.52 R
3485 3830 3.702045 CAGAAGTTACCTAGACTGAGGGG 59.298 52.174 0.00 0.00 41.36 4.79 R
4479 5487 4.517832 AGAACATACCCTTCGTCCAAAAAC 59.482 41.667 0.00 0.00 0.00 2.43 R
5991 7154 0.383231 GCCTCCGAATGCAAAGATGG 59.617 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.240403 GCCATTGTTCTTCTCCATCTATTCC 59.760 44.000 0.00 0.00 0.00 3.01
115 126 1.472082 CATAGACAAACCGCCATTGCA 59.528 47.619 0.00 0.00 37.32 4.08
116 127 1.610363 TAGACAAACCGCCATTGCAA 58.390 45.000 0.00 0.00 37.32 4.08
126 137 1.180029 GCCATTGCAACCATCACTCT 58.820 50.000 0.00 0.00 37.47 3.24
132 143 4.824479 TTGCAACCATCACTCTCTATGA 57.176 40.909 0.00 0.00 0.00 2.15
176 187 7.407337 CCAACCTAAACGCTAGATTATTTGTC 58.593 38.462 0.00 0.00 0.00 3.18
177 188 7.065324 CCAACCTAAACGCTAGATTATTTGTCA 59.935 37.037 0.00 0.00 0.00 3.58
188 199 8.091449 GCTAGATTATTTGTCATAGTGCTACCT 58.909 37.037 0.00 0.00 0.00 3.08
199 210 8.100791 TGTCATAGTGCTACCTATTTGAGTTTT 58.899 33.333 0.00 0.00 0.00 2.43
200 211 8.947115 GTCATAGTGCTACCTATTTGAGTTTTT 58.053 33.333 0.00 0.00 0.00 1.94
232 250 1.586154 AATCGGGGCAGTCTTTTGCG 61.586 55.000 0.00 0.00 45.00 4.85
233 251 2.463589 ATCGGGGCAGTCTTTTGCGA 62.464 55.000 0.00 0.00 45.00 5.10
264 282 3.444703 ACCTCTCGAACTATCATGTGC 57.555 47.619 0.00 0.00 0.00 4.57
305 355 3.056322 AGAGCCTGCCAATTTTTCATCAC 60.056 43.478 0.00 0.00 0.00 3.06
307 357 3.071312 AGCCTGCCAATTTTTCATCACAA 59.929 39.130 0.00 0.00 0.00 3.33
312 362 6.205076 CCTGCCAATTTTTCATCACAATTCAA 59.795 34.615 0.00 0.00 0.00 2.69
314 365 6.017275 TGCCAATTTTTCATCACAATTCAACC 60.017 34.615 0.00 0.00 0.00 3.77
393 444 0.618968 GTGGGAGAGGAGGGACATGT 60.619 60.000 0.00 0.00 0.00 3.21
449 500 2.614057 CGGCTTCTTGTGTGTTCTTCTT 59.386 45.455 0.00 0.00 0.00 2.52
462 513 3.071023 TGTTCTTCTTTCCGGTGACATCT 59.929 43.478 0.00 0.00 0.00 2.90
464 515 3.664107 TCTTCTTTCCGGTGACATCTTG 58.336 45.455 0.00 0.00 0.00 3.02
465 516 3.071023 TCTTCTTTCCGGTGACATCTTGT 59.929 43.478 0.00 0.00 0.00 3.16
466 517 3.485463 TCTTTCCGGTGACATCTTGTT 57.515 42.857 0.00 0.00 0.00 2.83
467 518 3.399330 TCTTTCCGGTGACATCTTGTTC 58.601 45.455 0.00 0.00 0.00 3.18
468 519 3.071023 TCTTTCCGGTGACATCTTGTTCT 59.929 43.478 0.00 0.00 0.00 3.01
469 520 4.282449 TCTTTCCGGTGACATCTTGTTCTA 59.718 41.667 0.00 0.00 0.00 2.10
470 521 4.610605 TTCCGGTGACATCTTGTTCTAA 57.389 40.909 0.00 0.00 0.00 2.10
471 522 3.921677 TCCGGTGACATCTTGTTCTAAC 58.078 45.455 0.00 0.00 0.00 2.34
472 523 3.000727 CCGGTGACATCTTGTTCTAACC 58.999 50.000 0.00 0.00 0.00 2.85
473 524 3.000727 CGGTGACATCTTGTTCTAACCC 58.999 50.000 0.00 0.00 0.00 4.11
500 551 6.563422 TCCTTAACATTAGCATGCACATTTC 58.437 36.000 21.98 0.00 33.05 2.17
521 572 1.729586 TGTACCAAGGTCCAGCTTCT 58.270 50.000 0.00 0.00 0.00 2.85
535 586 3.181483 CCAGCTTCTTTGCAACACTTTCT 60.181 43.478 0.00 0.00 34.99 2.52
537 588 4.266976 CAGCTTCTTTGCAACACTTTCTTG 59.733 41.667 0.00 0.00 34.99 3.02
571 622 3.572682 CACCTACCGGAGCTGACATATTA 59.427 47.826 9.46 0.00 0.00 0.98
588 639 7.333423 TGACATATTATTTAATGGGCTAGTCGC 59.667 37.037 0.00 0.00 38.13 5.19
633 684 2.119801 TCTTCATCCAAGCTTGCCTC 57.880 50.000 21.43 0.00 31.26 4.70
680 732 1.450848 CATGTGCCAGTCGAGCCAT 60.451 57.895 0.00 0.00 0.00 4.40
693 745 4.028490 GCCATCACCACGGTCCCA 62.028 66.667 0.00 0.00 0.00 4.37
701 753 2.813726 CCACGGTCCCAACCTCACA 61.814 63.158 0.00 0.00 44.04 3.58
727 779 3.721370 GAACGGCATGCCCCTGGAT 62.721 63.158 30.79 11.51 0.00 3.41
749 801 1.673920 GAGCAACAAAACCACCTCGAA 59.326 47.619 0.00 0.00 0.00 3.71
757 809 3.418684 AAACCACCTCGAATAGCACTT 57.581 42.857 0.00 0.00 0.00 3.16
772 824 4.067972 AGCACTTCGACCACTAGAAAAA 57.932 40.909 0.00 0.00 0.00 1.94
773 825 4.642429 AGCACTTCGACCACTAGAAAAAT 58.358 39.130 0.00 0.00 0.00 1.82
796 848 2.344025 CTTCTTACCAGTTACCGCCAC 58.656 52.381 0.00 0.00 0.00 5.01
808 860 1.802553 ACCGCCACCATATAGTCCTT 58.197 50.000 0.00 0.00 0.00 3.36
827 881 4.950475 TCCTTATACTCTATCATCTGGCCG 59.050 45.833 0.00 0.00 0.00 6.13
896 964 7.553334 TCTTCTCGTACTTAACTGGCATAAAT 58.447 34.615 0.00 0.00 0.00 1.40
897 965 8.038944 TCTTCTCGTACTTAACTGGCATAAATT 58.961 33.333 0.00 0.00 0.00 1.82
898 966 8.556213 TTCTCGTACTTAACTGGCATAAATTT 57.444 30.769 0.00 0.00 0.00 1.82
909 978 5.246883 ACTGGCATAAATTTTTGCTCCTTCT 59.753 36.000 25.95 7.07 38.88 2.85
959 1028 3.199880 CCTGTATGGGTTCATCTCCAC 57.800 52.381 0.00 0.00 35.67 4.02
960 1029 2.505407 CCTGTATGGGTTCATCTCCACA 59.495 50.000 0.00 0.00 35.67 4.17
977 1046 2.288763 CCACATTGTTTACCTGGCCAAC 60.289 50.000 7.01 1.34 0.00 3.77
997 1066 1.688735 CCCTACGAGCCATCTGATCAA 59.311 52.381 0.00 0.00 0.00 2.57
1021 1090 7.508848 ACAATGCCTTGCAACCTAGAGGTTA 62.509 44.000 13.58 0.00 45.01 2.85
1060 1129 2.651361 CAGACGTTGACCCGCTCT 59.349 61.111 0.00 0.00 0.00 4.09
1068 1137 1.134670 GTTGACCCGCTCTAGCTTGAT 60.135 52.381 0.00 0.00 39.32 2.57
1091 1160 5.287674 TGATCATGGTTTTTCTTTTGCCA 57.712 34.783 0.00 0.00 0.00 4.92
1130 1199 2.040544 AACCAAGCCGCGGAAGATG 61.041 57.895 33.48 20.14 0.00 2.90
1136 1205 2.125552 CCGCGGAAGATGCACAGA 60.126 61.111 24.07 0.00 0.00 3.41
1152 1221 0.250858 CAGAACCCTGGTGCATGACA 60.251 55.000 0.00 0.00 36.77 3.58
1193 1262 5.064707 GGCAAAAGCACTATATCACGAAGAA 59.935 40.000 0.00 0.00 0.00 2.52
1214 1283 2.178912 TTGTCATCAACTTCCCCGAC 57.821 50.000 0.00 0.00 0.00 4.79
1285 1354 2.669364 CATCTGCACCAAAGAACTTGC 58.331 47.619 0.00 0.00 33.27 4.01
1291 1360 0.663153 ACCAAAGAACTTGCTCGTGC 59.337 50.000 1.71 1.71 40.20 5.34
1318 1387 0.034574 TGCAACCGCCAACCATCTAT 60.035 50.000 0.00 0.00 37.32 1.98
1366 1435 4.438744 CCTCTTCGCCCACAAAAATATCAC 60.439 45.833 0.00 0.00 0.00 3.06
1376 1445 6.458210 CCACAAAAATATCACCAAGCTCTTT 58.542 36.000 0.00 0.00 0.00 2.52
1385 1454 4.464008 TCACCAAGCTCTTTGTCTTTCAT 58.536 39.130 0.00 0.00 34.87 2.57
1386 1455 5.620206 TCACCAAGCTCTTTGTCTTTCATA 58.380 37.500 0.00 0.00 34.87 2.15
1395 1464 6.238320 GCTCTTTGTCTTTCATATTCATCGCT 60.238 38.462 0.00 0.00 0.00 4.93
1396 1465 7.239166 TCTTTGTCTTTCATATTCATCGCTC 57.761 36.000 0.00 0.00 0.00 5.03
1400 1469 5.525012 TGTCTTTCATATTCATCGCTCCTTG 59.475 40.000 0.00 0.00 0.00 3.61
1410 1479 3.189495 TCATCGCTCCTTGTAGATCGATC 59.811 47.826 17.91 17.91 41.68 3.69
1411 1481 2.852449 TCGCTCCTTGTAGATCGATCT 58.148 47.619 29.58 29.58 40.86 2.75
1414 1484 3.364864 CGCTCCTTGTAGATCGATCTCAG 60.365 52.174 30.49 22.38 38.32 3.35
1427 1497 0.621571 ATCTCAGCCCTACCCTTGCA 60.622 55.000 0.00 0.00 0.00 4.08
1428 1498 0.621571 TCTCAGCCCTACCCTTGCAT 60.622 55.000 0.00 0.00 0.00 3.96
1449 1519 2.337879 TTTCCTCCTGCTGCACCGTT 62.338 55.000 0.00 0.00 0.00 4.44
1470 1540 0.461961 GGACTCCTTGAGGACGATGG 59.538 60.000 0.00 0.00 39.78 3.51
1525 1595 5.190528 GGGGCAGAGGATTATTATGAGATCA 59.809 44.000 0.00 0.00 0.00 2.92
1526 1596 6.347696 GGGCAGAGGATTATTATGAGATCAG 58.652 44.000 0.00 0.00 0.00 2.90
1533 1603 6.379703 AGGATTATTATGAGATCAGAGGGACG 59.620 42.308 0.00 0.00 0.00 4.79
1552 1622 3.725490 ACGGAAACAAGACTGACTAACC 58.275 45.455 0.00 0.00 0.00 2.85
1560 1630 1.870055 GACTGACTAACCCGACGCCA 61.870 60.000 0.00 0.00 0.00 5.69
1564 1634 2.259204 CTAACCCGACGCCAACGA 59.741 61.111 0.00 0.00 43.93 3.85
1574 1644 2.649034 GCCAACGAGGAGACGACA 59.351 61.111 2.86 0.00 41.22 4.35
1594 1664 5.508489 CGACAGAGTACAAAAACCCTAGACA 60.508 44.000 0.00 0.00 0.00 3.41
1626 1697 2.409948 GGCTGTCATAGTTTGCCTCT 57.590 50.000 0.00 0.00 40.36 3.69
1627 1698 2.716217 GGCTGTCATAGTTTGCCTCTT 58.284 47.619 0.00 0.00 40.36 2.85
1687 1828 8.958119 ATTGTAGTTTGCCTAATAATCGAGAA 57.042 30.769 0.00 0.00 0.00 2.87
2206 2403 1.731969 GTCGGTCCGTTCGTTCCAG 60.732 63.158 11.88 0.00 0.00 3.86
2244 2492 1.273609 TGAGGGCTGAGTAAGGGCTAA 60.274 52.381 0.00 0.00 0.00 3.09
2318 2566 5.163163 TGGCTTTGCTTCATAGGATCTGTAT 60.163 40.000 0.00 0.00 0.00 2.29
2319 2567 5.180868 GGCTTTGCTTCATAGGATCTGTATG 59.819 44.000 8.53 8.53 0.00 2.39
2320 2568 5.762218 GCTTTGCTTCATAGGATCTGTATGT 59.238 40.000 12.53 0.00 31.00 2.29
2321 2569 6.931281 GCTTTGCTTCATAGGATCTGTATGTA 59.069 38.462 12.53 5.62 31.00 2.29
2394 2655 1.200020 GTGTGCAATGGGCTTACTCAC 59.800 52.381 0.00 0.00 45.15 3.51
2484 2815 3.278574 TGGGCTTCTAATTCATTCGGTG 58.721 45.455 0.00 0.00 0.00 4.94
2579 2911 1.745087 GGAATGGTATGTGTGTGCTGG 59.255 52.381 0.00 0.00 0.00 4.85
2624 2962 4.201990 GGACAAAAGATAGCAGCCATTCAG 60.202 45.833 0.00 0.00 0.00 3.02
2641 2979 5.643348 CCATTCAGATGCTAGTGTTTGTGTA 59.357 40.000 0.00 0.00 31.67 2.90
2665 3004 5.999205 TTCCCTTACACGATACCTTGTTA 57.001 39.130 0.00 0.00 0.00 2.41
2668 3007 7.658525 TCCCTTACACGATACCTTGTTAATA 57.341 36.000 0.00 0.00 0.00 0.98
2798 3137 4.021456 GGTCCTTGTTGGTATCCTTTTTGG 60.021 45.833 0.00 0.00 37.07 3.28
2858 3197 2.354199 GCTTGTTTCTAGATCTGGCAGC 59.646 50.000 10.34 0.00 0.00 5.25
2916 3259 6.315144 TGATTACTTGGTTGTATGGATGTTCG 59.685 38.462 0.00 0.00 0.00 3.95
2917 3260 4.015872 ACTTGGTTGTATGGATGTTCGT 57.984 40.909 0.00 0.00 0.00 3.85
2918 3261 4.394729 ACTTGGTTGTATGGATGTTCGTT 58.605 39.130 0.00 0.00 0.00 3.85
2919 3262 4.215399 ACTTGGTTGTATGGATGTTCGTTG 59.785 41.667 0.00 0.00 0.00 4.10
2982 3325 9.915629 TTCTTAGACATCTCTAAAGTTCAAGAC 57.084 33.333 0.00 0.00 38.32 3.01
3180 3523 6.395629 TGTGCAACATCTTAGTTACTACTCC 58.604 40.000 0.00 0.00 45.67 3.85
3181 3524 6.014925 TGTGCAACATCTTAGTTACTACTCCA 60.015 38.462 0.00 0.00 45.67 3.86
3182 3525 7.042335 GTGCAACATCTTAGTTACTACTCCAT 58.958 38.462 0.00 0.00 34.30 3.41
3183 3526 7.222999 GTGCAACATCTTAGTTACTACTCCATC 59.777 40.741 0.00 0.00 34.30 3.51
3184 3527 7.124298 TGCAACATCTTAGTTACTACTCCATCT 59.876 37.037 0.00 0.00 35.78 2.90
3185 3528 8.630917 GCAACATCTTAGTTACTACTCCATCTA 58.369 37.037 0.00 0.00 35.78 1.98
3222 3565 7.830099 AGCCTTTTTAGAGATTCCAATATGG 57.170 36.000 0.00 0.00 39.43 2.74
3223 3566 7.586349 AGCCTTTTTAGAGATTCCAATATGGA 58.414 34.615 0.00 0.00 46.61 3.41
3245 3588 8.023021 TGGACTACATATAGAGCAAAATGAGT 57.977 34.615 0.00 0.00 32.23 3.41
3246 3589 7.928167 TGGACTACATATAGAGCAAAATGAGTG 59.072 37.037 0.00 0.00 32.23 3.51
3247 3590 8.144478 GGACTACATATAGAGCAAAATGAGTGA 58.856 37.037 0.00 0.00 32.23 3.41
3248 3591 9.190858 GACTACATATAGAGCAAAATGAGTGAG 57.809 37.037 0.00 0.00 32.23 3.51
3249 3592 8.700051 ACTACATATAGAGCAAAATGAGTGAGT 58.300 33.333 0.00 0.00 32.23 3.41
3250 3593 9.190858 CTACATATAGAGCAAAATGAGTGAGTC 57.809 37.037 0.00 0.00 0.00 3.36
3251 3594 7.790027 ACATATAGAGCAAAATGAGTGAGTCT 58.210 34.615 0.00 0.00 0.00 3.24
3252 3595 8.918116 ACATATAGAGCAAAATGAGTGAGTCTA 58.082 33.333 0.00 0.00 0.00 2.59
3253 3596 9.190858 CATATAGAGCAAAATGAGTGAGTCTAC 57.809 37.037 0.00 0.00 0.00 2.59
3254 3597 5.474578 AGAGCAAAATGAGTGAGTCTACA 57.525 39.130 0.00 0.00 0.00 2.74
3255 3598 5.233988 AGAGCAAAATGAGTGAGTCTACAC 58.766 41.667 0.00 0.00 40.60 2.90
3297 3640 8.969260 ATACATCCGTATATAGTCGGTATTGA 57.031 34.615 14.94 0.63 45.88 2.57
3298 3641 7.692460 ACATCCGTATATAGTCGGTATTGAA 57.308 36.000 14.94 0.07 45.88 2.69
3299 3642 8.114331 ACATCCGTATATAGTCGGTATTGAAA 57.886 34.615 14.94 0.00 45.88 2.69
3300 3643 8.746530 ACATCCGTATATAGTCGGTATTGAAAT 58.253 33.333 14.94 1.44 45.88 2.17
3301 3644 9.234384 CATCCGTATATAGTCGGTATTGAAATC 57.766 37.037 14.94 0.00 45.88 2.17
3302 3645 8.571461 TCCGTATATAGTCGGTATTGAAATCT 57.429 34.615 14.94 0.00 45.88 2.40
3303 3646 8.671921 TCCGTATATAGTCGGTATTGAAATCTC 58.328 37.037 14.94 0.00 45.88 2.75
3304 3647 8.675504 CCGTATATAGTCGGTATTGAAATCTCT 58.324 37.037 9.37 0.00 41.58 3.10
3311 3654 8.494016 AGTCGGTATTGAAATCTCTAAAAAGG 57.506 34.615 0.00 0.00 0.00 3.11
3312 3655 7.065923 AGTCGGTATTGAAATCTCTAAAAAGGC 59.934 37.037 0.00 0.00 0.00 4.35
3313 3656 7.065923 GTCGGTATTGAAATCTCTAAAAAGGCT 59.934 37.037 0.00 0.00 0.00 4.58
3314 3657 7.610305 TCGGTATTGAAATCTCTAAAAAGGCTT 59.390 33.333 0.00 0.00 0.00 4.35
3315 3658 8.889717 CGGTATTGAAATCTCTAAAAAGGCTTA 58.110 33.333 0.00 0.00 0.00 3.09
3331 3674 7.803279 AAAGGCTTATATTTAGAAACGGAGG 57.197 36.000 0.00 0.00 0.00 4.30
3332 3675 5.866207 AGGCTTATATTTAGAAACGGAGGG 58.134 41.667 0.00 0.00 0.00 4.30
3333 3676 5.605488 AGGCTTATATTTAGAAACGGAGGGA 59.395 40.000 0.00 0.00 0.00 4.20
3334 3677 5.932883 GGCTTATATTTAGAAACGGAGGGAG 59.067 44.000 0.00 0.00 0.00 4.30
3371 3715 7.770366 TGTTACTGAGTCTTGGTGAGTAATA 57.230 36.000 0.00 0.00 33.07 0.98
3428 3772 8.853077 ACATGTGAAGTCTGAAAAATGAGATA 57.147 30.769 0.00 0.00 0.00 1.98
3447 3792 9.650539 ATGAGATATCATGCTTACATACTTGTC 57.349 33.333 1.08 0.00 37.28 3.18
3485 3830 6.966435 TGCTTAAATGATTAAAAAGCAGCC 57.034 33.333 14.60 0.00 45.47 4.85
3523 3868 4.624015 ACTTCTGTGTTGATGCCATTTTG 58.376 39.130 0.00 0.00 0.00 2.44
3524 3869 4.341806 ACTTCTGTGTTGATGCCATTTTGA 59.658 37.500 0.00 0.00 0.00 2.69
3614 4427 3.958147 TCAATGGAGAGCTACGACCATTA 59.042 43.478 18.83 9.96 42.88 1.90
3639 4453 8.200364 AGTTTTCTGTTCAATTTCATGTTTGG 57.800 30.769 0.00 0.00 0.00 3.28
3696 4511 6.828502 TTATGCAGAAACGATAGACATGAC 57.171 37.500 0.00 0.00 41.38 3.06
3701 4516 6.816140 TGCAGAAACGATAGACATGACATTTA 59.184 34.615 0.00 0.00 41.38 1.40
3742 4557 7.041107 ACACATTGTAGAACTGTTTGCAAATT 58.959 30.769 16.21 5.62 0.00 1.82
3797 4612 5.190528 TCTCTAATGCTTTGTCATCTCCCTT 59.809 40.000 0.00 0.00 0.00 3.95
3933 4835 6.647212 TTTCGTCACTATATTTGAGCACTG 57.353 37.500 0.00 0.00 0.00 3.66
4053 5032 1.745653 GGACCTGGCAGTAATTTCAGC 59.254 52.381 14.43 0.00 0.00 4.26
4064 5043 6.073003 GGCAGTAATTTCAGCCAGATGTATAC 60.073 42.308 12.69 0.00 46.26 1.47
4479 5487 4.021544 CCTGGAGGATCTCTTAAGGATTCG 60.022 50.000 1.85 0.00 37.39 3.34
4544 5594 5.571285 GGAACCTTGTTCTCTTTTATCCCT 58.429 41.667 6.89 0.00 0.00 4.20
4590 5646 3.998341 GCAGACTGGTATCCGTTTAACAA 59.002 43.478 4.26 0.00 0.00 2.83
4858 5914 3.206964 GCAGCTAATCTACAACTTCCCC 58.793 50.000 0.00 0.00 0.00 4.81
5005 6061 0.828762 TTGGGCACTGCAAGCTCATT 60.829 50.000 13.51 0.00 43.00 2.57
5119 6182 2.284190 GTCTTATTGGTGCAGCTCCTC 58.716 52.381 18.08 0.00 0.00 3.71
5276 6409 5.466728 GCTTTCTCAGACAGTAAATGACACA 59.533 40.000 0.00 0.00 0.00 3.72
5804 6957 0.179004 ATGGTTTGCCGAGTTGTGGA 60.179 50.000 0.00 0.00 37.67 4.02
5824 6977 2.518709 GGGTTACCGTGGGTCCACA 61.519 63.158 18.84 0.00 46.47 4.17
5852 7013 4.685169 TTGAAGTCTCCATTTCGATTGC 57.315 40.909 0.00 0.00 0.00 3.56
5878 7039 4.176752 CCTGGCCCCTAAGCGACC 62.177 72.222 0.00 0.00 0.00 4.79
5899 7060 2.036733 CGGAACTTGTTGTGGGAGTAGA 59.963 50.000 0.00 0.00 0.00 2.59
5904 7065 3.838317 ACTTGTTGTGGGAGTAGATAGCA 59.162 43.478 0.00 0.00 0.00 3.49
5985 7148 5.682943 TGTGTATGCTGTAACCTTGTTTC 57.317 39.130 0.00 0.00 0.00 2.78
5990 7153 5.852282 ATGCTGTAACCTTGTTTCAACTT 57.148 34.783 0.00 0.00 0.00 2.66
5991 7154 5.243426 TGCTGTAACCTTGTTTCAACTTC 57.757 39.130 0.00 0.00 0.00 3.01
6003 7167 5.916318 TGTTTCAACTTCCATCTTTGCATT 58.084 33.333 0.00 0.00 0.00 3.56
6015 7179 1.922135 TTTGCATTCGGAGGCGCTTC 61.922 55.000 11.69 11.69 34.74 3.86
6023 7187 1.080995 CGGAGGCGCTTCTTTCAGAG 61.081 60.000 19.65 0.00 0.00 3.35
6053 7218 3.624900 CACTGATGCAACTGTGAGTTTG 58.375 45.455 23.76 1.20 36.03 2.93
6074 7239 2.354103 GCCATCTTGTCTGCTGTACTCA 60.354 50.000 0.00 0.00 0.00 3.41
6083 7251 2.297315 TCTGCTGTACTCAGTTGGACAG 59.703 50.000 12.99 2.23 43.05 3.51
6117 7285 3.074412 GCAGTGTATTGCTACCACTGTT 58.926 45.455 21.89 0.00 40.89 3.16
6173 7341 3.126001 TCCAGTCCTGTTTGCAACTAG 57.874 47.619 0.00 0.00 0.00 2.57
6174 7348 2.154462 CCAGTCCTGTTTGCAACTAGG 58.846 52.381 18.03 18.03 33.63 3.02
6260 7434 1.062428 AGTATGTAGTGCTGGCCCCTA 60.062 52.381 0.00 0.00 0.00 3.53
6262 7436 1.295020 ATGTAGTGCTGGCCCCTAAA 58.705 50.000 0.00 0.00 0.00 1.85
6310 7484 7.857404 ATACTGGGATAAAGTATGTAGTGCT 57.143 36.000 0.00 0.00 38.98 4.40
6311 7485 5.918608 ACTGGGATAAAGTATGTAGTGCTG 58.081 41.667 0.00 0.00 0.00 4.41
6312 7486 5.163301 ACTGGGATAAAGTATGTAGTGCTGG 60.163 44.000 0.00 0.00 0.00 4.85
6313 7487 4.065789 GGGATAAAGTATGTAGTGCTGGC 58.934 47.826 0.00 0.00 0.00 4.85
6314 7488 4.065789 GGATAAAGTATGTAGTGCTGGCC 58.934 47.826 0.00 0.00 0.00 5.36
6315 7489 2.420058 AAAGTATGTAGTGCTGGCCC 57.580 50.000 0.00 0.00 0.00 5.80
6316 7490 0.546598 AAGTATGTAGTGCTGGCCCC 59.453 55.000 0.00 0.00 0.00 5.80
6317 7491 0.326618 AGTATGTAGTGCTGGCCCCT 60.327 55.000 0.00 0.00 0.00 4.79
6318 7492 1.062428 AGTATGTAGTGCTGGCCCCTA 60.062 52.381 0.00 0.00 0.00 3.53
6319 7493 1.766496 GTATGTAGTGCTGGCCCCTAA 59.234 52.381 0.00 0.00 0.00 2.69
6320 7494 1.295020 ATGTAGTGCTGGCCCCTAAA 58.705 50.000 0.00 0.00 0.00 1.85
6321 7495 1.068948 TGTAGTGCTGGCCCCTAAAA 58.931 50.000 0.00 0.00 0.00 1.52
6322 7496 1.425831 TGTAGTGCTGGCCCCTAAAAA 59.574 47.619 0.00 0.00 0.00 1.94
6368 7542 7.857404 ATACTGGGATAAAGTATGTAGTGCT 57.143 36.000 0.00 0.00 38.98 4.40
6369 7543 5.918608 ACTGGGATAAAGTATGTAGTGCTG 58.081 41.667 0.00 0.00 0.00 4.41
6370 7544 5.163301 ACTGGGATAAAGTATGTAGTGCTGG 60.163 44.000 0.00 0.00 0.00 4.85
6371 7545 4.065789 GGGATAAAGTATGTAGTGCTGGC 58.934 47.826 0.00 0.00 0.00 4.85
6372 7546 4.065789 GGATAAAGTATGTAGTGCTGGCC 58.934 47.826 0.00 0.00 0.00 5.36
6373 7547 2.420058 AAAGTATGTAGTGCTGGCCC 57.580 50.000 0.00 0.00 0.00 5.80
6374 7548 0.546598 AAGTATGTAGTGCTGGCCCC 59.453 55.000 0.00 0.00 0.00 5.80
6375 7549 0.326618 AGTATGTAGTGCTGGCCCCT 60.327 55.000 0.00 0.00 0.00 4.79
6376 7550 1.062428 AGTATGTAGTGCTGGCCCCTA 60.062 52.381 0.00 0.00 0.00 3.53
6377 7551 1.766496 GTATGTAGTGCTGGCCCCTAA 59.234 52.381 0.00 0.00 0.00 2.69
6378 7552 1.295020 ATGTAGTGCTGGCCCCTAAA 58.705 50.000 0.00 0.00 0.00 1.85
6379 7553 0.618458 TGTAGTGCTGGCCCCTAAAG 59.382 55.000 0.00 0.00 0.00 1.85
6380 7554 0.618981 GTAGTGCTGGCCCCTAAAGT 59.381 55.000 0.00 0.00 0.00 2.66
6381 7555 1.835531 GTAGTGCTGGCCCCTAAAGTA 59.164 52.381 0.00 0.00 0.00 2.24
6382 7556 1.596496 AGTGCTGGCCCCTAAAGTAT 58.404 50.000 0.00 0.00 0.00 2.12
6383 7557 1.212935 AGTGCTGGCCCCTAAAGTATG 59.787 52.381 0.00 0.00 0.00 2.39
6384 7558 1.064685 GTGCTGGCCCCTAAAGTATGT 60.065 52.381 0.00 0.00 0.00 2.29
6385 7559 2.171870 GTGCTGGCCCCTAAAGTATGTA 59.828 50.000 0.00 0.00 0.00 2.29
6386 7560 2.438021 TGCTGGCCCCTAAAGTATGTAG 59.562 50.000 0.00 0.00 0.00 2.74
6413 7587 4.017126 AGCAACTTAAAGCCCCAGTATTC 58.983 43.478 0.00 0.00 0.00 1.75
6486 7679 0.102844 GAGCAGCTGCCTCTACTGAG 59.897 60.000 34.39 0.00 43.38 3.35
6493 7686 0.826715 TGCCTCTACTGAGCCACATC 59.173 55.000 0.00 0.00 38.93 3.06
6495 7688 1.489481 CCTCTACTGAGCCACATCCA 58.511 55.000 0.00 0.00 38.93 3.41
6496 7689 1.411977 CCTCTACTGAGCCACATCCAG 59.588 57.143 0.00 0.00 38.93 3.86
6497 7690 0.826715 TCTACTGAGCCACATCCAGC 59.173 55.000 0.00 0.00 0.00 4.85
6498 7691 0.829333 CTACTGAGCCACATCCAGCT 59.171 55.000 0.00 0.00 43.55 4.24
6507 7700 2.612471 GCCACATCCAGCTAGCTATGAG 60.612 54.545 26.93 20.63 0.00 2.90
6515 7708 2.036862 CAGCTAGCTATGAGCCACATCA 59.963 50.000 18.86 0.00 43.77 3.07
6564 7757 2.224606 ACAAACTCAGTGATGTGCCTG 58.775 47.619 0.00 0.00 0.00 4.85
6594 7789 6.381801 CACATAACCAAAACATGTCCTCTTC 58.618 40.000 0.00 0.00 30.59 2.87
6597 7792 4.170468 ACCAAAACATGTCCTCTTCACT 57.830 40.909 0.00 0.00 0.00 3.41
6598 7793 5.304686 ACCAAAACATGTCCTCTTCACTA 57.695 39.130 0.00 0.00 0.00 2.74
6599 7794 5.063880 ACCAAAACATGTCCTCTTCACTAC 58.936 41.667 0.00 0.00 0.00 2.73
6600 7795 5.163195 ACCAAAACATGTCCTCTTCACTACT 60.163 40.000 0.00 0.00 0.00 2.57
6601 7796 5.765182 CCAAAACATGTCCTCTTCACTACTT 59.235 40.000 0.00 0.00 0.00 2.24
6602 7797 6.263168 CCAAAACATGTCCTCTTCACTACTTT 59.737 38.462 0.00 0.00 0.00 2.66
6603 7798 7.355778 CAAAACATGTCCTCTTCACTACTTTC 58.644 38.462 0.00 0.00 0.00 2.62
6604 7799 5.808366 ACATGTCCTCTTCACTACTTTCA 57.192 39.130 0.00 0.00 0.00 2.69
6605 7800 6.174720 ACATGTCCTCTTCACTACTTTCAA 57.825 37.500 0.00 0.00 0.00 2.69
6606 7801 6.226787 ACATGTCCTCTTCACTACTTTCAAG 58.773 40.000 0.00 0.00 0.00 3.02
6607 7802 6.042093 ACATGTCCTCTTCACTACTTTCAAGA 59.958 38.462 0.00 0.00 0.00 3.02
6608 7803 6.479972 TGTCCTCTTCACTACTTTCAAGAA 57.520 37.500 0.00 0.00 0.00 2.52
6609 7804 6.516718 TGTCCTCTTCACTACTTTCAAGAAG 58.483 40.000 0.00 0.00 37.60 2.85
6610 7805 6.098409 TGTCCTCTTCACTACTTTCAAGAAGT 59.902 38.462 0.00 0.00 37.53 3.01
6611 7806 7.287005 TGTCCTCTTCACTACTTTCAAGAAGTA 59.713 37.037 0.00 0.00 37.53 2.24
6612 7807 7.595875 GTCCTCTTCACTACTTTCAAGAAGTAC 59.404 40.741 0.00 0.00 37.53 2.73
6613 7808 7.506261 TCCTCTTCACTACTTTCAAGAAGTACT 59.494 37.037 0.00 0.00 37.53 2.73
6614 7809 8.794553 CCTCTTCACTACTTTCAAGAAGTACTA 58.205 37.037 0.00 0.00 37.53 1.82
6660 7855 5.607939 CCAAAGGGGTTACAGAAGTTTTT 57.392 39.130 0.00 0.00 0.00 1.94
6679 7874 3.726291 TTTCTTTTTGAGCGAAAGGGG 57.274 42.857 0.00 0.00 35.37 4.79
6680 7875 2.358322 TCTTTTTGAGCGAAAGGGGT 57.642 45.000 0.00 0.00 35.37 4.95
6681 7876 3.495434 TCTTTTTGAGCGAAAGGGGTA 57.505 42.857 0.00 0.00 35.37 3.69
6682 7877 3.143728 TCTTTTTGAGCGAAAGGGGTAC 58.856 45.455 0.00 0.00 35.37 3.34
6683 7878 2.642154 TTTTGAGCGAAAGGGGTACA 57.358 45.000 0.00 0.00 0.00 2.90
6684 7879 2.178912 TTTGAGCGAAAGGGGTACAG 57.821 50.000 0.00 0.00 0.00 2.74
6726 7921 2.158623 TGAACATGTCCACAAGGAGCTT 60.159 45.455 0.00 0.00 46.92 3.74
6729 7924 0.957395 ATGTCCACAAGGAGCTTGCG 60.957 55.000 0.00 0.00 46.92 4.85
6737 7932 1.518903 AAGGAGCTTGCGTTGAAGGC 61.519 55.000 2.45 2.45 0.00 4.35
6738 7933 2.563427 GAGCTTGCGTTGAAGGCC 59.437 61.111 7.45 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 111 1.068921 GGTTGCAATGGCGGTTTGT 59.931 52.632 0.59 0.00 45.35 2.83
115 126 7.423844 TGTTATGTCATAGAGAGTGATGGTT 57.576 36.000 0.00 0.00 0.00 3.67
116 127 7.423844 TTGTTATGTCATAGAGAGTGATGGT 57.576 36.000 0.00 0.00 0.00 3.55
126 137 9.066892 GGGCTTTGATAATTGTTATGTCATAGA 57.933 33.333 0.00 0.00 0.00 1.98
132 143 6.440328 AGGTTGGGCTTTGATAATTGTTATGT 59.560 34.615 0.00 0.00 0.00 2.29
199 210 3.872240 GCCCCGATTGCTATGCCTATAAA 60.872 47.826 0.00 0.00 0.00 1.40
200 211 2.355716 GCCCCGATTGCTATGCCTATAA 60.356 50.000 0.00 0.00 0.00 0.98
206 217 1.510480 GACTGCCCCGATTGCTATGC 61.510 60.000 0.00 0.00 0.00 3.14
214 225 2.040544 CGCAAAAGACTGCCCCGAT 61.041 57.895 0.00 0.00 39.26 4.18
232 250 4.094212 GTTCGAGAGGTACACACGTTATC 58.906 47.826 0.00 0.00 0.00 1.75
233 251 3.755378 AGTTCGAGAGGTACACACGTTAT 59.245 43.478 0.00 0.00 0.00 1.89
264 282 0.846015 TGGTATGGAGGGATTGGCAG 59.154 55.000 0.00 0.00 0.00 4.85
305 355 6.816136 ACTTCACCCTAAAAAGGTTGAATTG 58.184 36.000 5.06 0.00 34.56 2.32
307 357 6.041637 GGAACTTCACCCTAAAAAGGTTGAAT 59.958 38.462 5.06 0.00 34.56 2.57
312 362 4.529716 TGGAACTTCACCCTAAAAAGGT 57.470 40.909 0.00 0.00 38.48 3.50
314 365 6.405278 AACATGGAACTTCACCCTAAAAAG 57.595 37.500 0.00 0.00 0.00 2.27
393 444 1.220749 GCAATCTGGTGACGGGCTA 59.779 57.895 0.00 0.00 37.31 3.93
438 489 2.093394 TGTCACCGGAAAGAAGAACACA 60.093 45.455 9.46 0.00 0.00 3.72
439 490 2.557317 TGTCACCGGAAAGAAGAACAC 58.443 47.619 9.46 0.00 0.00 3.32
449 500 4.312443 GTTAGAACAAGATGTCACCGGAA 58.688 43.478 9.46 0.00 0.00 4.30
462 513 5.486735 TGTTAAGGATCGGGTTAGAACAA 57.513 39.130 0.00 0.00 0.00 2.83
464 515 6.202379 GCTAATGTTAAGGATCGGGTTAGAAC 59.798 42.308 0.00 0.00 0.00 3.01
465 516 6.126997 TGCTAATGTTAAGGATCGGGTTAGAA 60.127 38.462 0.00 0.00 0.00 2.10
466 517 5.364446 TGCTAATGTTAAGGATCGGGTTAGA 59.636 40.000 0.00 0.00 0.00 2.10
467 518 5.607477 TGCTAATGTTAAGGATCGGGTTAG 58.393 41.667 0.00 0.00 0.00 2.34
468 519 5.617528 TGCTAATGTTAAGGATCGGGTTA 57.382 39.130 0.00 0.00 0.00 2.85
469 520 4.497291 TGCTAATGTTAAGGATCGGGTT 57.503 40.909 0.00 0.00 0.00 4.11
470 521 4.389374 CATGCTAATGTTAAGGATCGGGT 58.611 43.478 0.00 0.00 0.00 5.28
471 522 3.189287 GCATGCTAATGTTAAGGATCGGG 59.811 47.826 11.37 0.00 36.08 5.14
472 523 3.814842 TGCATGCTAATGTTAAGGATCGG 59.185 43.478 20.33 0.00 36.08 4.18
473 524 4.273235 TGTGCATGCTAATGTTAAGGATCG 59.727 41.667 20.33 0.00 36.08 3.69
500 551 2.026822 AGAAGCTGGACCTTGGTACATG 60.027 50.000 5.03 1.71 39.30 3.21
521 572 3.096092 AGGACCAAGAAAGTGTTGCAAA 58.904 40.909 0.00 0.00 0.00 3.68
535 586 2.904434 GGTAGGTGAAGAGAAGGACCAA 59.096 50.000 0.00 0.00 0.00 3.67
537 588 1.477295 CGGTAGGTGAAGAGAAGGACC 59.523 57.143 0.00 0.00 0.00 4.46
633 684 1.672356 CGCAAGTGACCTTCAGGGG 60.672 63.158 0.00 0.00 40.27 4.79
693 745 1.745827 CGTTCAAGGGTGTGTGAGGTT 60.746 52.381 0.00 0.00 0.00 3.50
701 753 2.268076 GCATGCCGTTCAAGGGTGT 61.268 57.895 6.36 0.00 0.00 4.16
727 779 2.103432 TCGAGGTGGTTTTGTTGCTCTA 59.897 45.455 0.00 0.00 0.00 2.43
749 801 5.401531 TTTTCTAGTGGTCGAAGTGCTAT 57.598 39.130 0.00 0.00 0.00 2.97
757 809 6.600882 AGAAGGTATTTTTCTAGTGGTCGA 57.399 37.500 0.00 0.00 33.30 4.20
761 813 8.101419 ACTGGTAAGAAGGTATTTTTCTAGTGG 58.899 37.037 0.00 0.00 33.92 4.00
772 824 3.133542 GGCGGTAACTGGTAAGAAGGTAT 59.866 47.826 0.00 0.00 0.00 2.73
773 825 2.497273 GGCGGTAACTGGTAAGAAGGTA 59.503 50.000 0.00 0.00 0.00 3.08
808 860 4.950475 CCTTCGGCCAGATGATAGAGTATA 59.050 45.833 2.24 0.00 0.00 1.47
827 881 4.142381 GCAACATCCTTGGTCATAACCTTC 60.142 45.833 0.00 0.00 46.60 3.46
848 915 1.412343 GGCTTCTTTTGGGAGTTTGCA 59.588 47.619 0.00 0.00 0.00 4.08
909 978 5.771165 GGTTTACACCCTTGAACCTTAATGA 59.229 40.000 0.00 0.00 38.74 2.57
943 1012 4.860802 ACAATGTGGAGATGAACCCATA 57.139 40.909 0.00 0.00 34.58 2.74
959 1028 1.275010 GGGTTGGCCAGGTAAACAATG 59.725 52.381 5.11 0.00 36.17 2.82
960 1029 1.149077 AGGGTTGGCCAGGTAAACAAT 59.851 47.619 5.11 0.00 36.17 2.71
977 1046 1.332195 TGATCAGATGGCTCGTAGGG 58.668 55.000 0.00 0.00 0.00 3.53
997 1066 2.440409 CTCTAGGTTGCAAGGCATTGT 58.560 47.619 13.30 0.00 38.76 2.71
1021 1090 4.164796 TGGGCACAGATTGATGATACTTCT 59.835 41.667 0.00 0.00 0.00 2.85
1023 1092 4.508551 TGGGCACAGATTGATGATACTT 57.491 40.909 0.00 0.00 0.00 2.24
1060 1129 7.707624 AGAAAAACCATGATCAATCAAGCTA 57.292 32.000 0.00 0.00 40.69 3.32
1068 1137 5.526846 GTGGCAAAAGAAAAACCATGATCAA 59.473 36.000 0.00 0.00 31.99 2.57
1091 1160 9.693739 TTGGTTGTACTTATTGATGAATATGGT 57.306 29.630 0.00 1.22 0.00 3.55
1118 1187 3.869272 CTGTGCATCTTCCGCGGC 61.869 66.667 23.51 8.25 0.00 6.53
1130 1199 1.604593 ATGCACCAGGGTTCTGTGC 60.605 57.895 6.89 6.89 42.64 4.57
1136 1205 1.259609 CAATGTCATGCACCAGGGTT 58.740 50.000 0.00 0.00 0.00 4.11
1193 1262 3.081804 GTCGGGGAAGTTGATGACAATT 58.918 45.455 0.00 0.00 38.32 2.32
1228 1297 7.062322 ACTATGAAATATGCATGGAACTTGGA 58.938 34.615 10.16 0.00 0.00 3.53
1285 1354 0.040958 GTTGCAAAGGTGAGCACGAG 60.041 55.000 0.00 0.00 41.05 4.18
1291 1360 1.733402 TTGGCGGTTGCAAAGGTGAG 61.733 55.000 0.00 0.00 45.35 3.51
1318 1387 2.103373 CTCGGGTCTCTCCAAATCTGA 58.897 52.381 0.00 0.00 38.11 3.27
1366 1435 7.149569 TGAATATGAAAGACAAAGAGCTTGG 57.850 36.000 0.00 0.00 39.56 3.61
1376 1445 5.282055 AGGAGCGATGAATATGAAAGACA 57.718 39.130 0.00 0.00 0.00 3.41
1385 1454 4.760204 TCGATCTACAAGGAGCGATGAATA 59.240 41.667 0.78 0.00 46.65 1.75
1386 1455 3.570125 TCGATCTACAAGGAGCGATGAAT 59.430 43.478 0.78 0.00 46.65 2.57
1395 1464 2.887783 GGCTGAGATCGATCTACAAGGA 59.112 50.000 27.36 7.14 37.25 3.36
1396 1465 2.029470 GGGCTGAGATCGATCTACAAGG 60.029 54.545 27.36 15.61 37.25 3.61
1400 1469 2.750712 GGTAGGGCTGAGATCGATCTAC 59.249 54.545 27.36 18.69 37.25 2.59
1410 1479 0.257039 AATGCAAGGGTAGGGCTGAG 59.743 55.000 0.00 0.00 0.00 3.35
1411 1481 0.704076 AAATGCAAGGGTAGGGCTGA 59.296 50.000 0.00 0.00 0.00 4.26
1414 1484 1.207089 GGAAAAATGCAAGGGTAGGGC 59.793 52.381 0.00 0.00 0.00 5.19
1427 1497 1.260544 GGTGCAGCAGGAGGAAAAAT 58.739 50.000 11.86 0.00 0.00 1.82
1428 1498 1.172180 CGGTGCAGCAGGAGGAAAAA 61.172 55.000 17.33 0.00 0.00 1.94
1449 1519 0.034380 ATCGTCCTCAAGGAGTCCGA 60.034 55.000 11.27 11.27 46.49 4.55
1506 1576 7.619302 GTCCCTCTGATCTCATAATAATCCTCT 59.381 40.741 0.00 0.00 0.00 3.69
1508 1578 6.379703 CGTCCCTCTGATCTCATAATAATCCT 59.620 42.308 0.00 0.00 0.00 3.24
1512 1582 5.641155 TCCGTCCCTCTGATCTCATAATAA 58.359 41.667 0.00 0.00 0.00 1.40
1525 1595 1.344763 CAGTCTTGTTTCCGTCCCTCT 59.655 52.381 0.00 0.00 0.00 3.69
1526 1596 1.343465 TCAGTCTTGTTTCCGTCCCTC 59.657 52.381 0.00 0.00 0.00 4.30
1533 1603 3.064931 CGGGTTAGTCAGTCTTGTTTCC 58.935 50.000 0.00 0.00 0.00 3.13
1552 1622 3.744719 TCTCCTCGTTGGCGTCGG 61.745 66.667 0.00 0.00 39.49 4.79
1560 1630 2.075338 GTACTCTGTCGTCTCCTCGTT 58.925 52.381 0.00 0.00 0.00 3.85
1564 1634 4.501058 GGTTTTTGTACTCTGTCGTCTCCT 60.501 45.833 0.00 0.00 0.00 3.69
1574 1644 4.906060 AGGTGTCTAGGGTTTTTGTACTCT 59.094 41.667 0.00 0.00 32.47 3.24
1594 1664 1.203262 TGACAGCCTTGTACCCTAGGT 60.203 52.381 8.29 0.00 37.76 3.08
1661 1734 8.958119 TCTCGATTATTAGGCAAACTACAATT 57.042 30.769 0.00 0.00 0.00 2.32
1687 1828 5.904362 AACTGTGCAAAAGAGTTCTCTTT 57.096 34.783 18.45 18.45 37.88 2.52
1741 1919 4.516195 GGACTCGGCCCGCTTCTC 62.516 72.222 0.00 0.00 0.00 2.87
2244 2492 1.227380 GATCTGGTGCTCCGCGAAT 60.227 57.895 8.23 0.00 36.30 3.34
2300 2548 6.077993 ACCTACATACAGATCCTATGAAGCA 58.922 40.000 12.80 0.00 0.00 3.91
2318 2566 2.231964 CGGTAAGCCACAGTAACCTACA 59.768 50.000 0.00 0.00 34.09 2.74
2319 2567 2.493278 TCGGTAAGCCACAGTAACCTAC 59.507 50.000 0.00 0.00 34.09 3.18
2320 2568 2.806434 TCGGTAAGCCACAGTAACCTA 58.194 47.619 0.00 0.00 34.09 3.08
2321 2569 1.636148 TCGGTAAGCCACAGTAACCT 58.364 50.000 0.00 0.00 34.09 3.50
2394 2655 1.134670 CCTCTGCGGTCTAAAAGGAGG 60.135 57.143 0.00 0.00 33.98 4.30
2484 2815 0.534652 GATGCCTGCCAGGAGATGAC 60.535 60.000 16.85 0.00 37.67 3.06
2528 2860 1.202533 AGTGTGGTCTTGACCAAGTCG 60.203 52.381 22.30 0.00 42.10 4.18
2579 2911 4.380233 CCAAATGCACATTTCCTCTGAGAC 60.380 45.833 6.17 0.00 38.84 3.36
2612 2947 1.489649 ACTAGCATCTGAATGGCTGCT 59.510 47.619 7.72 7.72 46.16 4.24
2624 2962 5.648092 AGGGAAATACACAAACACTAGCATC 59.352 40.000 0.00 0.00 0.00 3.91
2641 2979 5.431179 ACAAGGTATCGTGTAAGGGAAAT 57.569 39.130 0.00 0.00 33.98 2.17
2798 3137 6.199937 ACATCACCAAGCAATAGATTCAAC 57.800 37.500 0.00 0.00 0.00 3.18
2858 3197 8.831550 GTCAGAAAAAGGTATAAGAAGCCTATG 58.168 37.037 0.00 0.00 31.43 2.23
2879 3222 4.039973 ACCAAGTAATCAAACGAGGTCAGA 59.960 41.667 0.00 0.00 29.13 3.27
2916 3259 7.454260 ACATCTTCTTTCAATTAGGGACAAC 57.546 36.000 0.00 0.00 0.00 3.32
2917 3260 8.383175 ACTACATCTTCTTTCAATTAGGGACAA 58.617 33.333 0.00 0.00 0.00 3.18
2918 3261 7.918076 ACTACATCTTCTTTCAATTAGGGACA 58.082 34.615 0.00 0.00 0.00 4.02
2919 3262 7.496263 GGACTACATCTTCTTTCAATTAGGGAC 59.504 40.741 0.00 0.00 0.00 4.46
2982 3325 3.073678 TGTTCCATCACCAACTTCATCG 58.926 45.455 0.00 0.00 0.00 3.84
3196 3539 9.354673 CCATATTGGAATCTCTAAAAAGGCTTA 57.645 33.333 0.00 0.00 40.96 3.09
3197 3540 8.061304 TCCATATTGGAATCTCTAAAAAGGCTT 58.939 33.333 0.00 0.00 45.00 4.35
3198 3541 7.586349 TCCATATTGGAATCTCTAAAAAGGCT 58.414 34.615 0.00 0.00 45.00 4.58
3199 3542 7.823745 TCCATATTGGAATCTCTAAAAAGGC 57.176 36.000 0.00 0.00 45.00 4.35
3213 3556 8.664669 TTGCTCTATATGTAGTCCATATTGGA 57.335 34.615 0.00 0.00 45.98 3.53
3214 3557 9.725019 TTTTGCTCTATATGTAGTCCATATTGG 57.275 33.333 0.00 0.00 42.87 3.16
3219 3562 8.654997 ACTCATTTTGCTCTATATGTAGTCCAT 58.345 33.333 0.00 0.00 37.58 3.41
3220 3563 7.928167 CACTCATTTTGCTCTATATGTAGTCCA 59.072 37.037 0.00 0.00 0.00 4.02
3221 3564 8.144478 TCACTCATTTTGCTCTATATGTAGTCC 58.856 37.037 0.00 0.00 0.00 3.85
3222 3565 9.190858 CTCACTCATTTTGCTCTATATGTAGTC 57.809 37.037 0.00 0.00 0.00 2.59
3223 3566 8.700051 ACTCACTCATTTTGCTCTATATGTAGT 58.300 33.333 0.00 0.00 0.00 2.73
3224 3567 9.190858 GACTCACTCATTTTGCTCTATATGTAG 57.809 37.037 0.00 0.00 0.00 2.74
3225 3568 8.918116 AGACTCACTCATTTTGCTCTATATGTA 58.082 33.333 0.00 0.00 0.00 2.29
3226 3569 7.790027 AGACTCACTCATTTTGCTCTATATGT 58.210 34.615 0.00 0.00 0.00 2.29
3227 3570 9.190858 GTAGACTCACTCATTTTGCTCTATATG 57.809 37.037 0.00 0.00 0.00 1.78
3228 3571 8.918116 TGTAGACTCACTCATTTTGCTCTATAT 58.082 33.333 0.00 0.00 0.00 0.86
3229 3572 8.191446 GTGTAGACTCACTCATTTTGCTCTATA 58.809 37.037 0.00 0.00 35.68 1.31
3230 3573 7.038659 GTGTAGACTCACTCATTTTGCTCTAT 58.961 38.462 0.00 0.00 35.68 1.98
3231 3574 6.209589 AGTGTAGACTCACTCATTTTGCTCTA 59.790 38.462 0.00 0.00 44.07 2.43
3232 3575 5.011533 AGTGTAGACTCACTCATTTTGCTCT 59.988 40.000 0.00 0.00 44.07 4.09
3233 3576 5.233988 AGTGTAGACTCACTCATTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
3234 3577 5.220710 AGTGTAGACTCACTCATTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
3235 3578 5.931441 AAGTGTAGACTCACTCATTTTGC 57.069 39.130 0.00 0.00 46.25 3.68
3285 3628 9.595823 CCTTTTTAGAGATTTCAATACCGACTA 57.404 33.333 0.00 0.00 0.00 2.59
3286 3629 7.065923 GCCTTTTTAGAGATTTCAATACCGACT 59.934 37.037 0.00 0.00 0.00 4.18
3287 3630 7.065923 AGCCTTTTTAGAGATTTCAATACCGAC 59.934 37.037 0.00 0.00 0.00 4.79
3288 3631 7.110155 AGCCTTTTTAGAGATTTCAATACCGA 58.890 34.615 0.00 0.00 0.00 4.69
3289 3632 7.321745 AGCCTTTTTAGAGATTTCAATACCG 57.678 36.000 0.00 0.00 0.00 4.02
3305 3648 8.683615 CCTCCGTTTCTAAATATAAGCCTTTTT 58.316 33.333 0.00 0.00 0.00 1.94
3306 3649 7.284716 CCCTCCGTTTCTAAATATAAGCCTTTT 59.715 37.037 0.00 0.00 0.00 2.27
3307 3650 6.771267 CCCTCCGTTTCTAAATATAAGCCTTT 59.229 38.462 0.00 0.00 0.00 3.11
3308 3651 6.100714 TCCCTCCGTTTCTAAATATAAGCCTT 59.899 38.462 0.00 0.00 0.00 4.35
3309 3652 5.605488 TCCCTCCGTTTCTAAATATAAGCCT 59.395 40.000 0.00 0.00 0.00 4.58
3310 3653 5.861727 TCCCTCCGTTTCTAAATATAAGCC 58.138 41.667 0.00 0.00 0.00 4.35
3311 3654 6.522946 ACTCCCTCCGTTTCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
3312 3655 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
3313 3656 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3314 3657 8.773033 AAGTACTCCCTCCGTTTCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
3315 3658 7.343833 TGAAGTACTCCCTCCGTTTCTAAATAT 59.656 37.037 0.00 0.00 0.00 1.28
3316 3659 6.664816 TGAAGTACTCCCTCCGTTTCTAAATA 59.335 38.462 0.00 0.00 0.00 1.40
3317 3660 5.482878 TGAAGTACTCCCTCCGTTTCTAAAT 59.517 40.000 0.00 0.00 0.00 1.40
3318 3661 4.834496 TGAAGTACTCCCTCCGTTTCTAAA 59.166 41.667 0.00 0.00 0.00 1.85
3319 3662 4.410099 TGAAGTACTCCCTCCGTTTCTAA 58.590 43.478 0.00 0.00 0.00 2.10
3320 3663 4.038271 TGAAGTACTCCCTCCGTTTCTA 57.962 45.455 0.00 0.00 0.00 2.10
3321 3664 2.885616 TGAAGTACTCCCTCCGTTTCT 58.114 47.619 0.00 0.00 0.00 2.52
3322 3665 3.672767 TTGAAGTACTCCCTCCGTTTC 57.327 47.619 0.00 0.00 0.00 2.78
3323 3666 4.529377 TGTATTGAAGTACTCCCTCCGTTT 59.471 41.667 0.00 0.00 0.00 3.60
3324 3667 4.091549 TGTATTGAAGTACTCCCTCCGTT 58.908 43.478 0.00 0.00 0.00 4.44
3325 3668 3.705051 TGTATTGAAGTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
3326 3669 4.099573 ACATGTATTGAAGTACTCCCTCCG 59.900 45.833 0.00 0.00 0.00 4.63
3327 3670 5.615925 ACATGTATTGAAGTACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
3328 3671 7.707035 CAGTAACATGTATTGAAGTACTCCCTC 59.293 40.741 0.00 0.00 0.00 4.30
3329 3672 7.399191 TCAGTAACATGTATTGAAGTACTCCCT 59.601 37.037 0.00 0.00 0.00 4.20
3330 3673 7.553334 TCAGTAACATGTATTGAAGTACTCCC 58.447 38.462 0.00 0.00 0.00 4.30
3331 3674 8.251721 ACTCAGTAACATGTATTGAAGTACTCC 58.748 37.037 0.00 0.00 0.00 3.85
3332 3675 9.291664 GACTCAGTAACATGTATTGAAGTACTC 57.708 37.037 0.00 0.00 0.00 2.59
3333 3676 9.026121 AGACTCAGTAACATGTATTGAAGTACT 57.974 33.333 0.00 0.00 0.00 2.73
3334 3677 9.640963 AAGACTCAGTAACATGTATTGAAGTAC 57.359 33.333 0.00 0.00 0.00 2.73
3371 3715 8.792633 TGCTCTAAAAAGTGTTGCTATTGTATT 58.207 29.630 0.00 0.00 0.00 1.89
3428 3772 8.565896 TCAAAAGACAAGTATGTAAGCATGAT 57.434 30.769 0.00 0.00 40.74 2.45
3485 3830 3.702045 CAGAAGTTACCTAGACTGAGGGG 59.298 52.174 0.00 0.00 41.36 4.79
3508 3853 6.154203 TGTACTTTCAAAATGGCATCAACA 57.846 33.333 0.00 0.00 0.00 3.33
3509 3854 7.475771 TTTGTACTTTCAAAATGGCATCAAC 57.524 32.000 0.00 0.00 34.90 3.18
3602 4415 5.407387 TGAACAGAAAACTAATGGTCGTAGC 59.593 40.000 0.00 0.00 33.23 3.58
3614 4427 7.201635 GCCAAACATGAAATTGAACAGAAAACT 60.202 33.333 0.00 0.00 0.00 2.66
3639 4453 9.986833 AACAAAACAACATAAGAAATGAAAAGC 57.013 25.926 0.00 0.00 0.00 3.51
3689 4504 9.950680 TCTGTTTTCTCTTTTAAATGTCATGTC 57.049 29.630 0.00 0.00 0.00 3.06
3712 4527 7.017645 GCAAACAGTTCTACAATGTGTATCTG 58.982 38.462 0.00 2.89 34.90 2.90
3742 4557 9.571810 CACATGTAAGCAAATGATTAGCTAAAA 57.428 29.630 10.85 2.33 37.70 1.52
3759 4574 7.783090 AGCATTAGAGATGTTCACATGTAAG 57.217 36.000 0.00 0.00 36.57 2.34
3797 4612 6.990349 GCAGCCATTCTGTAACCTAATAGTTA 59.010 38.462 0.00 0.00 44.66 2.24
3926 4828 6.159988 ACTAACAGAAGATTACACAGTGCTC 58.840 40.000 0.00 0.00 0.00 4.26
4479 5487 4.517832 AGAACATACCCTTCGTCCAAAAAC 59.482 41.667 0.00 0.00 0.00 2.43
4590 5646 5.382618 GAACCTGCAAAACAGATTCAGAT 57.617 39.130 0.00 0.00 46.87 2.90
4858 5914 3.667261 CAGCATCAGCAAAAAGTTCTTCG 59.333 43.478 0.00 0.00 45.49 3.79
5005 6061 5.072329 GTCCTCCCCAATCATAATCTCTTCA 59.928 44.000 0.00 0.00 0.00 3.02
5276 6409 1.083489 CACCGCCAAATATGACACGT 58.917 50.000 0.00 0.00 0.00 4.49
5756 6905 1.966762 CCCAGCATCAAAACGGCTT 59.033 52.632 0.00 0.00 35.27 4.35
5804 6957 1.539372 TGGACCCACGGTAACCCAT 60.539 57.895 0.00 0.00 35.25 4.00
5824 6977 2.875094 ATGGAGACTTCAAAGCAGCT 57.125 45.000 0.00 0.00 0.00 4.24
5878 7039 2.036733 TCTACTCCCACAACAAGTTCCG 59.963 50.000 0.00 0.00 0.00 4.30
5899 7060 2.224305 GCAACTCCCTACGGAATGCTAT 60.224 50.000 9.54 0.00 37.86 2.97
5904 7065 2.618045 CCAAAGCAACTCCCTACGGAAT 60.618 50.000 0.00 0.00 37.86 3.01
5985 7148 3.191162 TCCGAATGCAAAGATGGAAGTTG 59.809 43.478 0.00 0.00 0.00 3.16
5990 7153 2.018644 GCCTCCGAATGCAAAGATGGA 61.019 52.381 0.00 0.00 0.00 3.41
5991 7154 0.383231 GCCTCCGAATGCAAAGATGG 59.617 55.000 0.00 0.00 0.00 3.51
6003 7167 1.079819 CTGAAAGAAGCGCCTCCGA 60.080 57.895 2.29 0.00 34.07 4.55
6037 7201 1.401761 TGGCAAACTCACAGTTGCAT 58.598 45.000 10.24 0.00 38.66 3.96
6053 7218 2.275318 GAGTACAGCAGACAAGATGGC 58.725 52.381 0.00 0.00 0.00 4.40
6103 7271 2.566833 TGCAGAACAGTGGTAGCAAT 57.433 45.000 5.37 0.00 0.00 3.56
6117 7285 5.422012 TCATACATGTCTCTTACCTTGCAGA 59.578 40.000 0.00 0.00 0.00 4.26
6231 7405 5.300752 CCAGCACTACATACTTTATCCCAG 58.699 45.833 0.00 0.00 0.00 4.45
6232 7406 4.444306 GCCAGCACTACATACTTTATCCCA 60.444 45.833 0.00 0.00 0.00 4.37
6233 7407 4.065789 GCCAGCACTACATACTTTATCCC 58.934 47.826 0.00 0.00 0.00 3.85
6284 7458 9.548631 AGCACTACATACTTTATCCCAGTATAT 57.451 33.333 0.00 0.00 35.62 0.86
6285 7459 8.803235 CAGCACTACATACTTTATCCCAGTATA 58.197 37.037 0.00 0.00 35.62 1.47
6286 7460 7.256332 CCAGCACTACATACTTTATCCCAGTAT 60.256 40.741 0.00 0.00 37.86 2.12
6287 7461 6.041637 CCAGCACTACATACTTTATCCCAGTA 59.958 42.308 0.00 0.00 0.00 2.74
6288 7462 5.163301 CCAGCACTACATACTTTATCCCAGT 60.163 44.000 0.00 0.00 0.00 4.00
6289 7463 5.300752 CCAGCACTACATACTTTATCCCAG 58.699 45.833 0.00 0.00 0.00 4.45
6290 7464 4.444306 GCCAGCACTACATACTTTATCCCA 60.444 45.833 0.00 0.00 0.00 4.37
6291 7465 4.065789 GCCAGCACTACATACTTTATCCC 58.934 47.826 0.00 0.00 0.00 3.85
6292 7466 4.065789 GGCCAGCACTACATACTTTATCC 58.934 47.826 0.00 0.00 0.00 2.59
6293 7467 4.065789 GGGCCAGCACTACATACTTTATC 58.934 47.826 4.39 0.00 0.00 1.75
6294 7468 3.181443 GGGGCCAGCACTACATACTTTAT 60.181 47.826 4.39 0.00 0.00 1.40
6295 7469 2.171870 GGGGCCAGCACTACATACTTTA 59.828 50.000 4.39 0.00 0.00 1.85
6296 7470 1.064685 GGGGCCAGCACTACATACTTT 60.065 52.381 4.39 0.00 0.00 2.66
6297 7471 0.546598 GGGGCCAGCACTACATACTT 59.453 55.000 4.39 0.00 0.00 2.24
6298 7472 0.326618 AGGGGCCAGCACTACATACT 60.327 55.000 4.39 0.00 0.00 2.12
6299 7473 1.420430 TAGGGGCCAGCACTACATAC 58.580 55.000 4.39 0.00 0.00 2.39
6300 7474 2.184088 TTAGGGGCCAGCACTACATA 57.816 50.000 4.39 0.00 0.00 2.29
6301 7475 1.295020 TTTAGGGGCCAGCACTACAT 58.705 50.000 4.39 0.00 0.00 2.29
6302 7476 1.068948 TTTTAGGGGCCAGCACTACA 58.931 50.000 4.39 0.00 0.00 2.74
6303 7477 2.209690 TTTTTAGGGGCCAGCACTAC 57.790 50.000 4.39 0.00 0.00 2.73
6342 7516 9.548631 AGCACTACATACTTTATCCCAGTATAT 57.451 33.333 0.00 0.00 35.62 0.86
6343 7517 8.803235 CAGCACTACATACTTTATCCCAGTATA 58.197 37.037 0.00 0.00 35.62 1.47
6344 7518 7.256332 CCAGCACTACATACTTTATCCCAGTAT 60.256 40.741 0.00 0.00 37.86 2.12
6345 7519 6.041637 CCAGCACTACATACTTTATCCCAGTA 59.958 42.308 0.00 0.00 0.00 2.74
6346 7520 5.163301 CCAGCACTACATACTTTATCCCAGT 60.163 44.000 0.00 0.00 0.00 4.00
6347 7521 5.300752 CCAGCACTACATACTTTATCCCAG 58.699 45.833 0.00 0.00 0.00 4.45
6348 7522 4.444306 GCCAGCACTACATACTTTATCCCA 60.444 45.833 0.00 0.00 0.00 4.37
6349 7523 4.065789 GCCAGCACTACATACTTTATCCC 58.934 47.826 0.00 0.00 0.00 3.85
6350 7524 4.065789 GGCCAGCACTACATACTTTATCC 58.934 47.826 0.00 0.00 0.00 2.59
6351 7525 4.065789 GGGCCAGCACTACATACTTTATC 58.934 47.826 4.39 0.00 0.00 1.75
6352 7526 3.181443 GGGGCCAGCACTACATACTTTAT 60.181 47.826 4.39 0.00 0.00 1.40
6353 7527 2.171870 GGGGCCAGCACTACATACTTTA 59.828 50.000 4.39 0.00 0.00 1.85
6354 7528 1.064685 GGGGCCAGCACTACATACTTT 60.065 52.381 4.39 0.00 0.00 2.66
6355 7529 0.546598 GGGGCCAGCACTACATACTT 59.453 55.000 4.39 0.00 0.00 2.24
6356 7530 0.326618 AGGGGCCAGCACTACATACT 60.327 55.000 4.39 0.00 0.00 2.12
6357 7531 1.420430 TAGGGGCCAGCACTACATAC 58.580 55.000 4.39 0.00 0.00 2.39
6358 7532 2.184088 TTAGGGGCCAGCACTACATA 57.816 50.000 4.39 0.00 0.00 2.29
6359 7533 1.212935 CTTTAGGGGCCAGCACTACAT 59.787 52.381 4.39 0.00 0.00 2.29
6360 7534 0.618458 CTTTAGGGGCCAGCACTACA 59.382 55.000 4.39 0.00 0.00 2.74
6361 7535 0.618981 ACTTTAGGGGCCAGCACTAC 59.381 55.000 4.39 0.00 0.00 2.73
6362 7536 2.257391 TACTTTAGGGGCCAGCACTA 57.743 50.000 4.39 0.00 0.00 2.74
6363 7537 1.212935 CATACTTTAGGGGCCAGCACT 59.787 52.381 4.39 0.00 0.00 4.40
6364 7538 1.064685 ACATACTTTAGGGGCCAGCAC 60.065 52.381 4.39 0.00 0.00 4.40
6365 7539 1.295020 ACATACTTTAGGGGCCAGCA 58.705 50.000 4.39 0.00 0.00 4.41
6366 7540 2.438392 ACTACATACTTTAGGGGCCAGC 59.562 50.000 4.39 0.00 0.00 4.85
6367 7541 3.744530 GCACTACATACTTTAGGGGCCAG 60.745 52.174 4.39 0.00 0.00 4.85
6368 7542 2.171870 GCACTACATACTTTAGGGGCCA 59.828 50.000 4.39 0.00 0.00 5.36
6369 7543 2.171870 TGCACTACATACTTTAGGGGCC 59.828 50.000 0.00 0.00 0.00 5.80
6370 7544 3.553828 TGCACTACATACTTTAGGGGC 57.446 47.619 0.00 0.00 0.00 5.80
6371 7545 3.877508 GCTTGCACTACATACTTTAGGGG 59.122 47.826 0.00 0.00 0.00 4.79
6372 7546 4.513442 TGCTTGCACTACATACTTTAGGG 58.487 43.478 0.00 0.00 0.00 3.53
6373 7547 5.643777 AGTTGCTTGCACTACATACTTTAGG 59.356 40.000 0.00 0.00 0.00 2.69
6374 7548 6.727824 AGTTGCTTGCACTACATACTTTAG 57.272 37.500 0.00 0.00 0.00 1.85
6375 7549 8.610248 TTAAGTTGCTTGCACTACATACTTTA 57.390 30.769 11.61 3.03 0.00 1.85
6376 7550 7.504924 TTAAGTTGCTTGCACTACATACTTT 57.495 32.000 11.61 0.79 0.00 2.66
6377 7551 7.504924 TTTAAGTTGCTTGCACTACATACTT 57.495 32.000 11.25 11.25 0.00 2.24
6378 7552 6.348540 GCTTTAAGTTGCTTGCACTACATACT 60.349 38.462 0.00 0.00 0.00 2.12
6379 7553 5.795441 GCTTTAAGTTGCTTGCACTACATAC 59.205 40.000 0.00 0.00 0.00 2.39
6380 7554 5.106317 GGCTTTAAGTTGCTTGCACTACATA 60.106 40.000 0.00 0.00 0.00 2.29
6381 7555 4.321230 GGCTTTAAGTTGCTTGCACTACAT 60.321 41.667 0.00 0.00 0.00 2.29
6382 7556 3.004315 GGCTTTAAGTTGCTTGCACTACA 59.996 43.478 0.00 0.00 0.00 2.74
6383 7557 3.565516 GGCTTTAAGTTGCTTGCACTAC 58.434 45.455 0.00 0.00 0.00 2.73
6384 7558 2.556622 GGGCTTTAAGTTGCTTGCACTA 59.443 45.455 0.00 0.00 0.00 2.74
6385 7559 1.341209 GGGCTTTAAGTTGCTTGCACT 59.659 47.619 0.00 0.00 0.00 4.40
6386 7560 1.605457 GGGGCTTTAAGTTGCTTGCAC 60.605 52.381 0.00 0.00 0.00 4.57
6413 7587 2.880268 TGCTCAAACAGACCATCAACTG 59.120 45.455 0.00 0.00 39.65 3.16
6486 7679 1.345741 TCATAGCTAGCTGGATGTGGC 59.654 52.381 27.68 0.00 0.00 5.01
6493 7686 0.755079 TGTGGCTCATAGCTAGCTGG 59.245 55.000 27.68 18.48 41.99 4.85
6495 7688 2.323599 TGATGTGGCTCATAGCTAGCT 58.676 47.619 23.12 23.12 41.99 3.32
6496 7689 2.827800 TGATGTGGCTCATAGCTAGC 57.172 50.000 6.62 6.62 41.99 3.42
6497 7690 3.065655 GCTTGATGTGGCTCATAGCTAG 58.934 50.000 14.12 6.31 41.99 3.42
6498 7691 2.702478 AGCTTGATGTGGCTCATAGCTA 59.298 45.455 19.80 0.00 41.99 3.32
6507 7700 4.082571 AGTTTTATGTGAGCTTGATGTGGC 60.083 41.667 0.00 0.00 0.00 5.01
6515 7708 3.403038 AGCGACAGTTTTATGTGAGCTT 58.597 40.909 0.00 0.00 39.36 3.74
6564 7757 2.599677 TGTTTTGGTTATGTGGGGTCC 58.400 47.619 0.00 0.00 0.00 4.46
6616 7811 9.936759 TTTGGTTCTGAACTTGAAAGTATTTTT 57.063 25.926 19.05 0.00 39.27 1.94
6617 7812 9.586435 CTTTGGTTCTGAACTTGAAAGTATTTT 57.414 29.630 19.05 0.00 39.27 1.82
6618 7813 8.197439 CCTTTGGTTCTGAACTTGAAAGTATTT 58.803 33.333 19.05 0.00 43.98 1.40
6619 7814 7.201911 CCCTTTGGTTCTGAACTTGAAAGTATT 60.202 37.037 19.05 0.00 38.57 1.89
6620 7815 6.265422 CCCTTTGGTTCTGAACTTGAAAGTAT 59.735 38.462 19.05 0.00 38.57 2.12
6657 7852 4.081365 ACCCCTTTCGCTCAAAAAGAAAAA 60.081 37.500 0.00 0.00 36.09 1.94
6658 7853 3.449377 ACCCCTTTCGCTCAAAAAGAAAA 59.551 39.130 0.00 0.00 36.09 2.29
6659 7854 3.028130 ACCCCTTTCGCTCAAAAAGAAA 58.972 40.909 0.00 0.00 36.09 2.52
6660 7855 2.661718 ACCCCTTTCGCTCAAAAAGAA 58.338 42.857 0.00 0.00 36.09 2.52
6661 7856 2.358322 ACCCCTTTCGCTCAAAAAGA 57.642 45.000 0.00 0.00 36.09 2.52
6662 7857 2.882137 TGTACCCCTTTCGCTCAAAAAG 59.118 45.455 0.00 0.00 34.25 2.27
6663 7858 2.882137 CTGTACCCCTTTCGCTCAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
6664 7859 2.105134 TCTGTACCCCTTTCGCTCAAAA 59.895 45.455 0.00 0.00 0.00 2.44
6665 7860 1.695242 TCTGTACCCCTTTCGCTCAAA 59.305 47.619 0.00 0.00 0.00 2.69
6666 7861 1.344065 TCTGTACCCCTTTCGCTCAA 58.656 50.000 0.00 0.00 0.00 3.02
6667 7862 1.344065 TTCTGTACCCCTTTCGCTCA 58.656 50.000 0.00 0.00 0.00 4.26
6668 7863 2.347731 CTTTCTGTACCCCTTTCGCTC 58.652 52.381 0.00 0.00 0.00 5.03
6669 7864 1.610886 GCTTTCTGTACCCCTTTCGCT 60.611 52.381 0.00 0.00 0.00 4.93
6670 7865 0.803117 GCTTTCTGTACCCCTTTCGC 59.197 55.000 0.00 0.00 0.00 4.70
6671 7866 2.076863 CAGCTTTCTGTACCCCTTTCG 58.923 52.381 0.00 0.00 35.61 3.46
6672 7867 2.039879 TCCAGCTTTCTGTACCCCTTTC 59.960 50.000 0.00 0.00 38.66 2.62
6673 7868 2.062636 TCCAGCTTTCTGTACCCCTTT 58.937 47.619 0.00 0.00 38.66 3.11
6674 7869 1.351350 GTCCAGCTTTCTGTACCCCTT 59.649 52.381 0.00 0.00 38.66 3.95
6675 7870 0.984995 GTCCAGCTTTCTGTACCCCT 59.015 55.000 0.00 0.00 38.66 4.79
6676 7871 0.690762 TGTCCAGCTTTCTGTACCCC 59.309 55.000 0.00 0.00 38.66 4.95
6677 7872 2.152016 GTTGTCCAGCTTTCTGTACCC 58.848 52.381 0.00 0.00 38.66 3.69
6678 7873 3.067833 GAGTTGTCCAGCTTTCTGTACC 58.932 50.000 0.00 0.00 38.66 3.34
6679 7874 2.731976 CGAGTTGTCCAGCTTTCTGTAC 59.268 50.000 0.00 0.00 38.66 2.90
6680 7875 2.626266 TCGAGTTGTCCAGCTTTCTGTA 59.374 45.455 0.00 0.00 38.66 2.74
6681 7876 1.412710 TCGAGTTGTCCAGCTTTCTGT 59.587 47.619 0.00 0.00 38.66 3.41
6682 7877 2.154854 TCGAGTTGTCCAGCTTTCTG 57.845 50.000 0.00 0.00 40.02 3.02
6683 7878 2.300152 TCATCGAGTTGTCCAGCTTTCT 59.700 45.455 0.00 0.00 0.00 2.52
6684 7879 2.688507 TCATCGAGTTGTCCAGCTTTC 58.311 47.619 0.00 0.00 0.00 2.62
6726 7921 2.282180 GGGAAGGCCTTCAACGCA 60.282 61.111 39.29 0.00 41.20 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.