AutoCloner

Multiple sequence alignment - TraesCS5B01G341700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G341700	chr5B	100.000	2465	0	0	1	2465	526584489	526586953	0.000000e+00	4553.0
1	TraesCS5B01G341700	chr5B	82.339	1676	208	49	1	1624	528545683	528544044	0.000000e+00	1375.0
2	TraesCS5B01G341700	chr5B	81.317	1686	206	56	1	1624	527055311	527056949	0.000000e+00	1267.0
3	TraesCS5B01G341700	chr5B	81.806	1473	175	50	213	1624	528541946	528540506	0.000000e+00	1149.0
4	TraesCS5B01G341700	chr5B	83.880	1098	129	36	544	1624	527052900	527053966	0.000000e+00	1003.0
5	TraesCS5B01G341700	chr5B	80.730	1370	181	46	2	1335	526567981	526569303	0.000000e+00	990.0
6	TraesCS5B01G341700	chr5B	83.055	419	45	15	1	419	528542715	528542323	8.380000e-95	357.0
7	TraesCS5B01G341700	chr5B	78.836	378	53	15	1727	2098	527059618	527059974	1.910000e-56	230.0
8	TraesCS5B01G341700	chr5B	87.692	65	5	3	1626	1687	430469383	430469447	3.400000e-09	73.1
9	TraesCS5B01G341700	chr5D	92.382	1654	82	18	1	1627	433018292	433019928	0.000000e+00	2316.0
10	TraesCS5B01G341700	chr5D	82.294	1683	194	50	1	1624	435249477	435247840	0.000000e+00	1362.0
11	TraesCS5B01G341700	chr5D	80.785	1655	218	61	14	1624	434396413	434398011	0.000000e+00	1203.0
12	TraesCS5B01G341700	chr5D	93.112	813	39	7	1656	2465	433019925	433020723	0.000000e+00	1175.0
13	TraesCS5B01G341700	chr5D	83.992	1012	117	29	642	1624	435251854	435250859	0.000000e+00	929.0
14	TraesCS5B01G341700	chr5D	82.592	1057	126	31	570	1586	433014735	433015773	0.000000e+00	880.0
15	TraesCS5B01G341700	chr5D	79.080	674	93	27	62	710	434399344	434399994	1.050000e-113	420.0
16	TraesCS5B01G341700	chr5D	89.744	195	17	3	523	716	433014539	433014731	1.890000e-61	246.0
17	TraesCS5B01G341700	chr5A	92.883	1110	38	14	544	1627	547643284	547644378	0.000000e+00	1574.0
18	TraesCS5B01G341700	chr5A	81.193	1659	215	68	1	1624	548233485	548235081	0.000000e+00	1245.0
19	TraesCS5B01G341700	chr5A	80.427	1686	216	63	1	1624	549161269	549159636	0.000000e+00	1181.0
20	TraesCS5B01G341700	chr5A	92.985	613	39	4	1656	2267	547644375	547644984	0.000000e+00	891.0
21	TraesCS5B01G341700	chr5A	79.571	700	82	30	1	680	472468497	472467839	6.260000e-121	444.0
22	TraesCS5B01G341700	chr5A	87.042	355	32	5	1687	2027	547601336	547601690	2.970000e-104	388.0
23	TraesCS5B01G341700	chr5A	83.771	419	57	6	1	419	549158336	549157929	1.070000e-103	387.0
24	TraesCS5B01G341700	chr5A	77.716	718	99	28	1	694	548236387	548237067	1.380000e-102	383.0
25	TraesCS5B01G341700	chr5A	87.361	269	33	1	1	269	549164318	549164051	8.560000e-80	307.0
26	TraesCS5B01G341700	chr5A	84.047	257	23	13	429	684	547600034	547600273	5.300000e-57	231.0
27	TraesCS5B01G341700	chr6D	93.147	394	24	3	1735	2125	218314313	218313920	2.130000e-160	575.0
28	TraesCS5B01G341700	chr3A	90.625	64	1	3	1629	1687	108469252	108469189	2.030000e-11	80.5
29	TraesCS5B01G341700	chr6B	88.406	69	3	4	1627	1690	195461931	195461863	7.310000e-11	78.7
30	TraesCS5B01G341700	chr4D	86.111	72	9	1	1632	1702	389209246	389209175	2.630000e-10	76.8
31	TraesCS5B01G341700	chr4B	90.000	60	5	1	1632	1690	124049311	124049252	2.630000e-10	76.8
32	TraesCS5B01G341700	chr2A	86.765	68	6	2	1631	1696	679966961	679966895	3.400000e-09	73.1
33	TraesCS5B01G341700	chrUn	84.615	78	4	7	1619	1690	34213308	34213233	1.220000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G341700	chr5B	526584489	526586953	2464	False	4553.000000	4553	100.000000	1	2465	1	chr5B.!!$F3	2464
1	TraesCS5B01G341700	chr5B	526567981	526569303	1322	False	990.000000	990	80.730000	2	1335	1	chr5B.!!$F2	1333
2	TraesCS5B01G341700	chr5B	528540506	528545683	5177	True	960.333333	1375	82.400000	1	1624	3	chr5B.!!$R1	1623
3	TraesCS5B01G341700	chr5B	527052900	527059974	7074	False	833.333333	1267	81.344333	1	2098	3	chr5B.!!$F4	2097
4	TraesCS5B01G341700	chr5D	433014539	433020723	6184	False	1154.250000	2316	89.457500	1	2465	4	chr5D.!!$F1	2464
5	TraesCS5B01G341700	chr5D	435247840	435251854	4014	True	1145.500000	1362	83.143000	1	1624	2	chr5D.!!$R1	1623
6	TraesCS5B01G341700	chr5D	434396413	434399994	3581	False	811.500000	1203	79.932500	14	1624	2	chr5D.!!$F2	1610
7	TraesCS5B01G341700	chr5A	547643284	547644984	1700	False	1232.500000	1574	92.934000	544	2267	2	chr5A.!!$F2	1723
8	TraesCS5B01G341700	chr5A	548233485	548237067	3582	False	814.000000	1245	79.454500	1	1624	2	chr5A.!!$F3	1623
9	TraesCS5B01G341700	chr5A	549157929	549164318	6389	True	625.000000	1181	83.853000	1	1624	3	chr5A.!!$R2	1623
10	TraesCS5B01G341700	chr5A	472467839	472468497	658	True	444.000000	444	79.571000	1	680	1	chr5A.!!$R1	679
11	TraesCS5B01G341700	chr5A	547600034	547601690	1656	False	309.500000	388	85.544500	429	2027	2	chr5A.!!$F1	1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
636	6475	0.179161	CTGGACGTCTCGCCTACAAG	60.179	60.0	16.46	0.0	0.0	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2370	9091	0.746659	AAGCAACAACCAGCAGGAAC	59.253	50.0	0.35	0.0	38.69	3.62	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
96	100	1.577736	ACTCCTCTTGGGACATCCTG	58.422	55.000	0.00	0.00	39.58	3.86
148	152	1.891919	GCAAGTGGCACCTCGAACA	60.892	57.895	15.27	0.00	43.97	3.18
153	157	1.003839	TGGCACCTCGAACATCACC	60.004	57.895	0.00	0.00	0.00	4.02
155	159	1.296715	GCACCTCGAACATCACCCT	59.703	57.895	0.00	0.00	0.00	4.34
208	212	0.820891	GGCCACCGATGAGCATGATT	60.821	55.000	0.00	0.00	0.00	2.57
250	321	0.317160	TTCCGCTGACGTTGATGACT	59.683	50.000	0.00	0.00	37.70	3.41
270	341	2.232298	GACCAGGTCAGCCTCTTCCG	62.232	65.000	15.43	0.00	44.97	4.30
280	351	2.722201	CCTCTTCCGCCCGTTAGCT	61.722	63.158	0.00	0.00	0.00	3.32
309	380	2.115910	CCACTTCTTGGCCAGCCA	59.884	61.111	7.43	7.43	45.63	4.75
333	404	2.175878	AGTGTCTTGGCACTCATCAC	57.824	50.000	1.62	0.00	45.63	3.06
336	407	1.375908	TCTTGGCACTCATCACGGC	60.376	57.895	0.00	0.00	0.00	5.68
343	414	0.530650	CACTCATCACGGCGGCTTAT	60.531	55.000	13.24	0.00	0.00	1.73
358	429	4.475944	CGGCTTATTTGTGTTTCTGGAAG	58.524	43.478	0.00	0.00	0.00	3.46
373	444	3.084786	CTGGAAGCGGGAGAAATTCTTT	58.915	45.455	0.00	0.00	0.00	2.52
374	445	3.081804	TGGAAGCGGGAGAAATTCTTTC	58.918	45.455	0.00	0.00	39.96	2.62
408	481	1.640670	AGGGAGCTTGGAATGCCTTTA	59.359	47.619	0.00	0.00	37.80	1.85
413	486	2.692041	AGCTTGGAATGCCTTTATCTGC	59.308	45.455	0.00	0.00	37.80	4.26
419	492	1.901591	ATGCCTTTATCTGCGGATGG	58.098	50.000	18.65	11.83	33.71	3.51
420	493	0.546122	TGCCTTTATCTGCGGATGGT	59.454	50.000	18.65	0.00	33.71	3.55
447	539	5.886960	GCACTTAGCCATGGATTTATAGG	57.113	43.478	18.40	0.00	37.23	2.57
497	595	1.000739	ATGTGATGGTTGGGCAGGG	59.999	57.895	0.00	0.00	0.00	4.45
516	614	2.263540	GCCAAAGCTGTGGGCATG	59.736	61.111	24.78	0.00	46.92	4.06
517	615	2.975536	CCAAAGCTGTGGGCATGG	59.024	61.111	16.00	0.00	44.79	3.66
518	616	1.607178	CCAAAGCTGTGGGCATGGA	60.607	57.895	16.00	0.00	46.42	3.41
519	617	1.588082	CAAAGCTGTGGGCATGGAC	59.412	57.895	0.00	0.00	44.79	4.02
520	618	1.973281	AAAGCTGTGGGCATGGACG	60.973	57.895	0.00	0.00	44.79	4.79
541	639	1.675310	TGGTACATGTGCTGCTGCC	60.675	57.895	13.86	5.20	38.71	4.85
579	6418	3.645212	TGATGAGATCTGGATCAGGTTCC	59.355	47.826	0.00	0.00	40.22	3.62
635	6474	1.880894	CTGGACGTCTCGCCTACAA	59.119	57.895	16.46	0.00	0.00	2.41
636	6475	0.179161	CTGGACGTCTCGCCTACAAG	60.179	60.000	16.46	0.00	0.00	3.16
668	6509	0.471591	TTTGCTGGGGAAATGGCACT	60.472	50.000	0.00	0.00	34.30	4.40
699	6546	2.783288	GGGGTCTCTAGCCGAACCG	61.783	68.421	9.10	0.00	44.74	4.44
716	6563	2.292267	ACCGCATTTCAGACATGGATC	58.708	47.619	0.00	0.00	0.00	3.36
732	6586	5.105877	ACATGGATCAGTGCTTGAAAATCTG	60.106	40.000	0.00	0.00	39.77	2.90
750	6604	8.997621	AAAATCTGACCAAAATCATTCATCAG	57.002	30.769	0.00	0.00	34.68	2.90
755	6613	5.106038	TGACCAAAATCATTCATCAGACTGC	60.106	40.000	0.00	0.00	0.00	4.40
857	6728	1.142465	CATATGCACTTCCCTGAGCCT	59.858	52.381	0.00	0.00	0.00	4.58
864	6748	0.829990	CTTCCCTGAGCCTTCTCCTC	59.170	60.000	0.00	0.00	38.58	3.71
901	6788	1.678101	GCCTGCTCAACACAAACTTCT	59.322	47.619	0.00	0.00	0.00	2.85
916	6803	7.338703	ACACAAACTTCTTCATCTCATATGCAT	59.661	33.333	3.79	3.79	0.00	3.96
937	6824	2.741517	TGCCACATCACAATCTACAACG	59.258	45.455	0.00	0.00	0.00	4.10
989	6882	3.788227	TTAGCCAGTCAGGAACACATT	57.212	42.857	0.00	0.00	41.22	2.71
1066	6966	0.895100	GATGTTGGTTGCCAGAGCCA	60.895	55.000	0.00	0.00	38.69	4.75
1068	6968	2.115910	TTGGTTGCCAGAGCCAGG	59.884	61.111	0.00	0.00	38.69	4.45
1212	7115	0.323542	CTCTGGTGTACCTCGGGACT	60.324	60.000	2.32	0.00	36.82	3.85
1390	7293	1.065636	TCTTGAGCTCCATTGCTGAGG	60.066	52.381	12.15	0.00	44.17	3.86
1556	7468	7.658167	TGTAAGATTCGTTTGTCACAGGAAATA	59.342	33.333	0.00	0.00	0.00	1.40
1582	7495	8.940397	ATAGAAAAGAGACAATTTTCCTGGAA	57.060	30.769	4.68	4.68	44.21	3.53
1937	8587	3.188254	GCTCTTTCTCTGCACTTTCCTTC	59.812	47.826	0.00	0.00	0.00	3.46
1978	8628	8.599055	TGCATGTCTGAAGATTCTGAATATAC	57.401	34.615	2.28	0.00	36.99	1.47
1990	8645	7.660617	AGATTCTGAATATACAACAGGCATCTG	59.339	37.037	2.28	0.00	46.10	2.90
2191	8897	5.559148	ATTCTCCTGATGGTTCATCCTAC	57.441	43.478	5.57	0.00	39.87	3.18
2195	8901	5.039920	TCCTGATGGTTCATCCTACAATG	57.960	43.478	5.57	0.00	39.87	2.82
2290	9010	7.669427	TGATAGATTGCATGGAAACTTGTTTT	58.331	30.769	14.66	0.00	37.77	2.43
2291	9011	8.149647	TGATAGATTGCATGGAAACTTGTTTTT	58.850	29.630	14.66	0.00	37.77	1.94
2336	9056	9.559958	CAGTATGAAACCATTGACATCTAAAAC	57.440	33.333	0.00	0.00	39.69	2.43
2337	9057	9.295825	AGTATGAAACCATTGACATCTAAAACA	57.704	29.630	0.00	0.00	0.00	2.83
2338	9058	9.559958	GTATGAAACCATTGACATCTAAAACAG	57.440	33.333	0.00	0.00	0.00	3.16
2339	9059	7.815840	TGAAACCATTGACATCTAAAACAGA	57.184	32.000	0.00	0.00	37.79	3.41
2342	9062	7.678947	AACCATTGACATCTAAAACAGAGAG	57.321	36.000	0.00	0.00	36.48	3.20
2350	9071	4.222124	TCTAAAACAGAGAGGAATGGCC	57.778	45.455	0.00	0.00	0.00	5.36
2370	9091	1.648720	CAAGTGCTGGTTGACCACG	59.351	57.895	0.00	0.00	42.01	4.94
2406	9396	4.794278	TGCTTTGATGATCACATTGCTT	57.206	36.364	0.00	0.00	36.82	3.91
2425	9415	8.872845	CATTGCTTTACATACAATTTTCCTTCC	58.127	33.333	0.00	0.00	31.82	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	1.840181	CATCGGTGATGGAGTACGTG	58.160	55.000	0.00	0.00	36.51	4.49
10	11	0.102481	GCATCGGTGATGGAGTACGT	59.898	55.000	0.00	0.00	40.10	3.57
96	100	1.517475	GGTCTTCGGCGAGCTCTTC	60.517	63.158	10.46	3.14	0.00	2.87
153	157	1.372499	CGTGTACACCACCGACAGG	60.372	63.158	20.11	0.00	41.26	4.00
155	159	0.038983	CATCGTGTACACCACCGACA	60.039	55.000	20.11	0.00	41.26	4.35
162	166	1.076332	GCCACTTCATCGTGTACACC	58.924	55.000	20.11	3.06	33.07	4.16
208	212	2.046023	CGGAGGGTCATGCTGCAA	60.046	61.111	6.36	0.00	0.00	4.08
275	346	2.671070	GCAGAGGGTGGCAGCTAA	59.329	61.111	17.16	0.00	0.00	3.09
309	380	4.049393	GTGCCAAGACACTCGCTT	57.951	55.556	0.00	0.00	37.58	4.68
333	404	1.199097	AGAAACACAAATAAGCCGCCG	59.801	47.619	0.00	0.00	0.00	6.46
336	407	4.475944	CTTCCAGAAACACAAATAAGCCG	58.524	43.478	0.00	0.00	0.00	5.52
343	414	1.028905	CCCGCTTCCAGAAACACAAA	58.971	50.000	0.00	0.00	0.00	2.83
376	447	3.480470	CAAGCTCCCTCTCACAGAAAAA	58.520	45.455	0.00	0.00	0.00	1.94
377	448	2.224621	CCAAGCTCCCTCTCACAGAAAA	60.225	50.000	0.00	0.00	0.00	2.29
378	449	1.349026	CCAAGCTCCCTCTCACAGAAA	59.651	52.381	0.00	0.00	0.00	2.52
379	450	0.979665	CCAAGCTCCCTCTCACAGAA	59.020	55.000	0.00	0.00	0.00	3.02
385	456	0.465278	GGCATTCCAAGCTCCCTCTC	60.465	60.000	0.00	0.00	0.00	3.20
388	459	0.411058	AAAGGCATTCCAAGCTCCCT	59.589	50.000	0.00	0.00	33.74	4.20
389	460	2.143876	TAAAGGCATTCCAAGCTCCC	57.856	50.000	0.00	0.00	33.74	4.30
394	465	2.033801	CCGCAGATAAAGGCATTCCAAG	59.966	50.000	0.00	0.00	33.74	3.61
408	481	3.112205	GCCCTCACCATCCGCAGAT	62.112	63.158	0.00	0.00	0.00	2.90
413	486	0.179073	CTAAGTGCCCTCACCATCCG	60.179	60.000	0.00	0.00	44.16	4.18
447	539	1.872679	CGCTCGCTTTACCCTCGAC	60.873	63.158	0.00	0.00	0.00	4.20
476	570	1.100510	CTGCCCAACCATCACATGAG	58.899	55.000	0.00	0.00	0.00	2.90
477	571	0.323633	CCTGCCCAACCATCACATGA	60.324	55.000	0.00	0.00	0.00	3.07
478	573	1.324740	CCCTGCCCAACCATCACATG	61.325	60.000	0.00	0.00	0.00	3.21
479	574	1.000739	CCCTGCCCAACCATCACAT	59.999	57.895	0.00	0.00	0.00	3.21
501	599	1.588082	GTCCATGCCCACAGCTTTG	59.412	57.895	0.00	0.00	44.23	2.77
503	601	2.360350	CGTCCATGCCCACAGCTT	60.360	61.111	0.00	0.00	44.23	3.74
507	605	2.751036	CATGCGTCCATGCCCACA	60.751	61.111	0.00	0.00	42.08	4.17
508	606	2.884997	TACCATGCGTCCATGCCCAC	62.885	60.000	0.00	0.00	45.97	4.61
509	607	2.674220	TACCATGCGTCCATGCCCA	61.674	57.895	0.00	0.00	45.97	5.36
512	610	0.308684	CATGTACCATGCGTCCATGC	59.691	55.000	6.85	0.00	45.97	4.06
513	611	1.331447	CACATGTACCATGCGTCCATG	59.669	52.381	14.19	14.19	46.70	3.66
514	612	1.667236	CACATGTACCATGCGTCCAT	58.333	50.000	0.00	0.00	0.00	3.41
515	613	1.024046	GCACATGTACCATGCGTCCA	61.024	55.000	0.00	0.00	0.00	4.02
516	614	0.744414	AGCACATGTACCATGCGTCC	60.744	55.000	0.00	0.00	44.25	4.79
517	615	0.374758	CAGCACATGTACCATGCGTC	59.625	55.000	0.00	0.00	44.25	5.19
518	616	1.647545	GCAGCACATGTACCATGCGT	61.648	55.000	0.00	0.00	44.25	5.24
519	617	1.063006	GCAGCACATGTACCATGCG	59.937	57.895	0.00	0.00	44.25	4.73
520	618	0.099968	CAGCAGCACATGTACCATGC	59.900	55.000	13.07	13.07	39.74	4.06
521	619	0.099968	GCAGCAGCACATGTACCATG	59.900	55.000	0.00	2.77	41.58	3.66
534	632	0.245539	CACCTCCAAAATGGCAGCAG	59.754	55.000	0.00	0.00	37.47	4.24
579	6418	2.912025	AAACACTTGGCCCCAGCG	60.912	61.111	0.00	0.00	41.24	5.18
635	6474	2.325082	GCAAACCCATCACGACGCT	61.325	57.895	0.00	0.00	0.00	5.07
636	6475	2.175811	GCAAACCCATCACGACGC	59.824	61.111	0.00	0.00	0.00	5.19
699	6546	3.488721	GCACTGATCCATGTCTGAAATGC	60.489	47.826	2.10	0.00	0.00	3.56
716	6563	4.572985	TTGGTCAGATTTTCAAGCACTG	57.427	40.909	0.00	0.00	0.00	3.66
732	6586	5.338365	GCAGTCTGATGAATGATTTTGGTC	58.662	41.667	3.32	0.00	40.33	4.02
750	6604	1.642952	GCAACTAGCTGCAGGCAGTC	61.643	60.000	21.19	13.77	45.24	3.51
857	6728	6.213600	GCCATGGATTTATAGTAGGAGGAGAA	59.786	42.308	18.40	0.00	0.00	2.87
864	6748	4.018960	AGCAGGCCATGGATTTATAGTAGG	60.019	45.833	18.40	0.00	0.00	3.18
901	6788	3.822940	TGTGGCATGCATATGAGATGAA	58.177	40.909	21.36	0.00	36.36	2.57
916	6803	2.741517	CGTTGTAGATTGTGATGTGGCA	59.258	45.455	0.00	0.00	0.00	4.92
937	6824	1.074752	CTCTGAAACTCTGAAGGCGC	58.925	55.000	0.00	0.00	0.00	6.53
989	6882	4.297768	TGGATGGATCATGGTTGAGTCTA	58.702	43.478	0.00	0.00	34.73	2.59
1308	7211	2.352814	GCACAAGACGTACTCCATCACT	60.353	50.000	0.00	0.00	0.00	3.41
1356	7259	0.894184	TCAAGAACGCCCTCTCGACT	60.894	55.000	0.00	0.00	0.00	4.18
1556	7468	8.940397	TCCAGGAAAATTGTCTCTTTTCTATT	57.060	30.769	8.04	0.00	40.69	1.73
1653	7567	8.290325	CCCAAAATAAGTGTCTCAACTTTAGAC	58.710	37.037	0.00	0.00	43.04	2.59
1654	7568	8.215050	TCCCAAAATAAGTGTCTCAACTTTAGA	58.785	33.333	0.00	0.00	40.77	2.10
1655	7569	8.290325	GTCCCAAAATAAGTGTCTCAACTTTAG	58.710	37.037	0.00	0.00	40.77	1.85
1656	7570	7.041644	CGTCCCAAAATAAGTGTCTCAACTTTA	60.042	37.037	0.00	0.00	40.77	1.85
1657	7571	6.238648	CGTCCCAAAATAAGTGTCTCAACTTT	60.239	38.462	0.00	0.00	40.77	2.66
1658	7572	5.238650	CGTCCCAAAATAAGTGTCTCAACTT	59.761	40.000	0.00	0.00	42.89	2.66
1670	7584	4.644163	TTCTTCCTCCGTCCCAAAATAA	57.356	40.909	0.00	0.00	0.00	1.40
1912	8562	3.682377	GGAAAGTGCAGAGAAAGAGCTAC	59.318	47.826	0.00	0.00	0.00	3.58
1978	8628	4.978083	AAGATTTAGCAGATGCCTGTTG	57.022	40.909	0.14	0.00	42.35	3.33
1990	8645	5.179555	AGAAGGTGTCGACAAAAGATTTAGC	59.820	40.000	21.95	3.69	0.00	3.09
2093	8771	1.941668	GCAGGCTGTACTCCACAAGTC	60.942	57.143	17.16	0.00	39.55	3.01
2158	8854	7.385894	ACCATCAGGAGAATATTTAGAAGCT	57.614	36.000	0.00	0.00	38.69	3.74
2191	8897	3.955145	TGGTACAGGAGCCACATTG	57.045	52.632	0.00	0.00	0.00	2.82
2336	9056	1.078214	TTGCGGCCATTCCTCTCTG	60.078	57.895	2.24	0.00	0.00	3.35
2337	9057	1.222936	CTTGCGGCCATTCCTCTCT	59.777	57.895	2.24	0.00	0.00	3.10
2338	9058	1.078143	ACTTGCGGCCATTCCTCTC	60.078	57.895	2.24	0.00	0.00	3.20
2339	9059	1.377725	CACTTGCGGCCATTCCTCT	60.378	57.895	2.24	0.00	0.00	3.69
2370	9091	0.746659	AAGCAACAACCAGCAGGAAC	59.253	50.000	0.35	0.00	38.69	3.62
2406	9396	9.196139	CAATAGGGGAAGGAAAATTGTATGTAA	57.804	33.333	0.00	0.00	0.00	2.41
2425	9415	8.744008	CGATAGTTAGATAACACACAATAGGG	57.256	38.462	5.59	0.00	38.62	3.53

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.