Multiple sequence alignment - TraesCS5B01G341100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G341100 chr5B 100.000 4033 0 0 1 4033 526247268 526251300 0.000000e+00 7448.0
1 TraesCS5B01G341100 chr5B 85.430 1558 187 18 843 2369 526269413 526270961 0.000000e+00 1583.0
2 TraesCS5B01G341100 chr5B 92.814 835 45 4 1 832 526266670 526267492 0.000000e+00 1195.0
3 TraesCS5B01G341100 chr5B 88.889 639 62 9 32 668 36768596 36767965 0.000000e+00 778.0
4 TraesCS5B01G341100 chr5B 86.460 709 83 9 142 842 669228299 669227596 0.000000e+00 765.0
5 TraesCS5B01G341100 chr5B 76.881 1276 216 42 995 2245 528066668 528065447 0.000000e+00 649.0
6 TraesCS5B01G341100 chr5B 80.299 736 115 20 1534 2255 525881888 525882607 2.760000e-146 529.0
7 TraesCS5B01G341100 chr5B 80.245 734 119 17 1534 2255 525936041 525936760 2.760000e-146 529.0
8 TraesCS5B01G341100 chr5B 80.163 736 116 20 1534 2255 525832782 525833501 1.280000e-144 523.0
9 TraesCS5B01G341100 chr5B 77.404 832 148 21 864 1671 526517737 526518552 3.670000e-125 459.0
10 TraesCS5B01G341100 chr5B 81.409 511 61 12 2697 3179 526576179 526576683 1.760000e-103 387.0
11 TraesCS5B01G341100 chr5B 81.986 433 58 13 1063 1483 407241758 407241334 2.310000e-92 350.0
12 TraesCS5B01G341100 chr5B 89.219 269 29 0 2740 3008 526271474 526271742 1.800000e-88 337.0
13 TraesCS5B01G341100 chr5B 93.452 168 8 3 3867 4033 443230514 443230349 3.110000e-61 246.0
14 TraesCS5B01G341100 chr5B 90.984 122 8 3 3626 3745 462328135 462328015 1.160000e-35 161.0
15 TraesCS5B01G341100 chr5B 92.241 116 6 3 3631 3745 655152459 655152572 1.160000e-35 161.0
16 TraesCS5B01G341100 chr5B 89.764 127 10 3 3624 3748 55460260 55460135 4.170000e-35 159.0
17 TraesCS5B01G341100 chr5B 84.043 94 12 2 3755 3845 526438859 526438952 2.000000e-13 87.9
18 TraesCS5B01G341100 chr5B 94.000 50 3 0 3797 3846 526271534 526271583 4.320000e-10 76.8
19 TraesCS5B01G341100 chr5D 91.029 1438 107 9 873 2303 432933414 432934836 0.000000e+00 1921.0
20 TraesCS5B01G341100 chr5D 84.153 1281 150 25 997 2259 433010594 433011839 0.000000e+00 1192.0
21 TraesCS5B01G341100 chr5D 96.624 711 23 1 1820 2529 432894978 432895688 0.000000e+00 1179.0
22 TraesCS5B01G341100 chr5D 89.093 816 53 9 1022 1831 432893416 432894201 0.000000e+00 981.0
23 TraesCS5B01G341100 chr5D 79.759 1408 215 41 868 2246 433007926 433009292 0.000000e+00 957.0
24 TraesCS5B01G341100 chr5D 82.255 1082 160 17 1247 2310 432983426 432984493 0.000000e+00 905.0
25 TraesCS5B01G341100 chr5D 90.838 513 28 9 3363 3871 432925573 432926070 0.000000e+00 669.0
26 TraesCS5B01G341100 chr5D 81.743 849 97 17 2362 3164 433012137 433012973 0.000000e+00 656.0
27 TraesCS5B01G341100 chr5D 80.653 858 95 36 2372 3187 432934997 432935825 2.070000e-167 599.0
28 TraesCS5B01G341100 chr5D 83.431 513 60 15 2512 3019 432989759 432990251 1.710000e-123 453.0
29 TraesCS5B01G341100 chr5D 77.608 786 137 21 910 1671 432995221 432995991 1.330000e-119 440.0
30 TraesCS5B01G341100 chr5D 87.379 412 15 3 2862 3243 432925126 432925530 4.790000e-119 438.0
31 TraesCS5B01G341100 chr5D 87.385 325 30 7 2704 3019 432805134 432804812 2.960000e-96 363.0
32 TraesCS5B01G341100 chr5D 77.101 690 116 30 1000 1671 344534316 344534981 1.070000e-95 361.0
33 TraesCS5B01G341100 chr5D 96.000 125 4 1 3242 3366 465909193 465909316 6.830000e-48 202.0
34 TraesCS5B01G341100 chr5D 73.380 432 91 19 1873 2289 432782622 432783044 5.440000e-29 139.0
35 TraesCS5B01G341100 chr5D 87.838 74 9 0 3774 3847 433012564 433012637 2.000000e-13 87.9
36 TraesCS5B01G341100 chr5D 94.340 53 2 1 3797 3849 432985072 432985123 3.340000e-11 80.5
37 TraesCS5B01G341100 chr5D 90.164 61 5 1 3797 3857 432935412 432935471 1.200000e-10 78.7
38 TraesCS5B01G341100 chr5A 82.020 2247 251 63 1022 3164 547595925 547598122 0.000000e+00 1770.0
39 TraesCS5B01G341100 chr5A 76.272 1336 246 46 997 2292 547508858 547510162 0.000000e+00 645.0
40 TraesCS5B01G341100 chr5A 78.182 825 147 16 864 1671 547543379 547544187 2.800000e-136 496.0
41 TraesCS5B01G341100 chr5A 79.866 596 80 18 2674 3238 547614090 547614676 2.260000e-107 399.0
42 TraesCS5B01G341100 chr5A 82.041 490 57 16 2539 3019 547510338 547510805 4.890000e-104 388.0
43 TraesCS5B01G341100 chr5A 77.831 627 108 19 1062 1671 447546995 447546383 3.830000e-95 359.0
44 TraesCS5B01G341100 chr5A 87.220 313 29 8 2712 3016 547404104 547403795 2.980000e-91 346.0
45 TraesCS5B01G341100 chr5A 96.667 120 2 1 3247 3366 566605916 566606033 8.840000e-47 198.0
46 TraesCS5B01G341100 chr5A 87.838 74 9 0 3774 3847 547597713 547597786 2.000000e-13 87.9
47 TraesCS5B01G341100 chr1B 91.191 806 56 5 1 804 570825910 570825118 0.000000e+00 1081.0
48 TraesCS5B01G341100 chr1B 72.114 1230 263 46 1062 2248 420369284 420368092 8.470000e-77 298.0
49 TraesCS5B01G341100 chr1B 94.643 168 6 3 3867 4033 143607981 143607816 1.440000e-64 257.0
50 TraesCS5B01G341100 chr1B 96.063 127 5 0 3240 3366 645257600 645257726 1.470000e-49 207.0
51 TraesCS5B01G341100 chr6B 89.455 844 73 9 1 842 669398949 669399778 0.000000e+00 1051.0
52 TraesCS5B01G341100 chr6B 94.643 168 6 3 3867 4033 547004742 547004577 1.440000e-64 257.0
53 TraesCS5B01G341100 chr6B 93.038 158 8 3 3877 4033 430548160 430548315 1.130000e-55 228.0
54 TraesCS5B01G341100 chr2B 92.101 671 50 3 1 668 795990747 795990077 0.000000e+00 942.0
55 TraesCS5B01G341100 chr2B 91.453 117 10 0 3629 3745 39372938 39373054 1.160000e-35 161.0
56 TraesCS5B01G341100 chr2A 89.505 667 63 7 2 665 715992904 715993566 0.000000e+00 837.0
57 TraesCS5B01G341100 chr2A 87.892 669 70 10 1 665 715992076 715992737 0.000000e+00 776.0
58 TraesCS5B01G341100 chr2A 85.650 669 85 11 1 665 715989637 715990298 0.000000e+00 693.0
59 TraesCS5B01G341100 chr1A 87.970 665 73 4 2 665 516557235 516557893 0.000000e+00 778.0
60 TraesCS5B01G341100 chr1A 72.127 1227 268 44 1062 2248 390102071 390100879 1.820000e-78 303.0
61 TraesCS5B01G341100 chr1A 94.048 168 7 3 3867 4033 18143952 18144117 6.690000e-63 252.0
62 TraesCS5B01G341100 chr6A 73.574 1332 253 69 997 2289 31745507 31744236 6.230000e-113 418.0
63 TraesCS5B01G341100 chr1D 72.946 998 221 29 1055 2032 310254153 310253185 6.550000e-78 302.0
64 TraesCS5B01G341100 chr3B 94.048 168 7 3 3867 4033 762390440 762390275 6.690000e-63 252.0
65 TraesCS5B01G341100 chr3B 94.048 168 7 3 3867 4033 763299069 763299234 6.690000e-63 252.0
66 TraesCS5B01G341100 chr3B 92.727 165 8 4 3870 4033 680925688 680925527 6.740000e-58 235.0
67 TraesCS5B01G341100 chr3B 95.833 120 5 0 3247 3366 40210996 40210877 1.140000e-45 195.0
68 TraesCS5B01G341100 chr7B 99.180 122 1 0 3245 3366 749554040 749553919 1.890000e-53 220.0
69 TraesCS5B01G341100 chr7B 90.833 120 11 0 3626 3745 444184134 444184015 1.160000e-35 161.0
70 TraesCS5B01G341100 chr2D 90.533 169 12 4 3867 4033 181929776 181929942 1.890000e-53 220.0
71 TraesCS5B01G341100 chr2D 91.453 117 10 0 3629 3745 610294533 610294417 1.160000e-35 161.0
72 TraesCS5B01G341100 chrUn 95.968 124 5 0 3243 3366 87032131 87032254 6.830000e-48 202.0
73 TraesCS5B01G341100 chrUn 95.968 124 5 0 3243 3366 478927085 478927208 6.830000e-48 202.0
74 TraesCS5B01G341100 chrUn 92.241 116 7 2 3631 3745 76605067 76605181 3.230000e-36 163.0
75 TraesCS5B01G341100 chr7D 95.935 123 4 1 3244 3366 3908071 3908192 8.840000e-47 198.0
76 TraesCS5B01G341100 chr6D 95.902 122 2 1 3245 3366 78027432 78027314 1.140000e-45 195.0
77 TraesCS5B01G341100 chr4B 88.800 125 14 0 3628 3752 486279948 486280072 1.940000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G341100 chr5B 526247268 526251300 4032 False 7448.000000 7448 100.000000 1 4033 1 chr5B.!!$F4 4032
1 TraesCS5B01G341100 chr5B 526266670 526271742 5072 False 797.950000 1583 90.365750 1 3846 4 chr5B.!!$F9 3845
2 TraesCS5B01G341100 chr5B 36767965 36768596 631 True 778.000000 778 88.889000 32 668 1 chr5B.!!$R1 636
3 TraesCS5B01G341100 chr5B 669227596 669228299 703 True 765.000000 765 86.460000 142 842 1 chr5B.!!$R7 700
4 TraesCS5B01G341100 chr5B 528065447 528066668 1221 True 649.000000 649 76.881000 995 2245 1 chr5B.!!$R6 1250
5 TraesCS5B01G341100 chr5B 525881888 525882607 719 False 529.000000 529 80.299000 1534 2255 1 chr5B.!!$F2 721
6 TraesCS5B01G341100 chr5B 525936041 525936760 719 False 529.000000 529 80.245000 1534 2255 1 chr5B.!!$F3 721
7 TraesCS5B01G341100 chr5B 525832782 525833501 719 False 523.000000 523 80.163000 1534 2255 1 chr5B.!!$F1 721
8 TraesCS5B01G341100 chr5B 526517737 526518552 815 False 459.000000 459 77.404000 864 1671 1 chr5B.!!$F6 807
9 TraesCS5B01G341100 chr5B 526576179 526576683 504 False 387.000000 387 81.409000 2697 3179 1 chr5B.!!$F7 482
10 TraesCS5B01G341100 chr5D 432893416 432895688 2272 False 1080.000000 1179 92.858500 1022 2529 2 chr5D.!!$F6 1507
11 TraesCS5B01G341100 chr5D 432933414 432935825 2411 False 866.233333 1921 87.282000 873 3857 3 chr5D.!!$F8 2984
12 TraesCS5B01G341100 chr5D 433007926 433012973 5047 False 723.225000 1192 83.373250 868 3847 4 chr5D.!!$F10 2979
13 TraesCS5B01G341100 chr5D 432925126 432926070 944 False 553.500000 669 89.108500 2862 3871 2 chr5D.!!$F7 1009
14 TraesCS5B01G341100 chr5D 432983426 432985123 1697 False 492.750000 905 88.297500 1247 3849 2 chr5D.!!$F9 2602
15 TraesCS5B01G341100 chr5D 432995221 432995991 770 False 440.000000 440 77.608000 910 1671 1 chr5D.!!$F4 761
16 TraesCS5B01G341100 chr5D 344534316 344534981 665 False 361.000000 361 77.101000 1000 1671 1 chr5D.!!$F1 671
17 TraesCS5B01G341100 chr5A 547595925 547598122 2197 False 928.950000 1770 84.929000 1022 3847 2 chr5A.!!$F5 2825
18 TraesCS5B01G341100 chr5A 547508858 547510805 1947 False 516.500000 645 79.156500 997 3019 2 chr5A.!!$F4 2022
19 TraesCS5B01G341100 chr5A 547543379 547544187 808 False 496.000000 496 78.182000 864 1671 1 chr5A.!!$F1 807
20 TraesCS5B01G341100 chr5A 547614090 547614676 586 False 399.000000 399 79.866000 2674 3238 1 chr5A.!!$F2 564
21 TraesCS5B01G341100 chr5A 447546383 447546995 612 True 359.000000 359 77.831000 1062 1671 1 chr5A.!!$R1 609
22 TraesCS5B01G341100 chr1B 570825118 570825910 792 True 1081.000000 1081 91.191000 1 804 1 chr1B.!!$R3 803
23 TraesCS5B01G341100 chr1B 420368092 420369284 1192 True 298.000000 298 72.114000 1062 2248 1 chr1B.!!$R2 1186
24 TraesCS5B01G341100 chr6B 669398949 669399778 829 False 1051.000000 1051 89.455000 1 842 1 chr6B.!!$F2 841
25 TraesCS5B01G341100 chr2B 795990077 795990747 670 True 942.000000 942 92.101000 1 668 1 chr2B.!!$R1 667
26 TraesCS5B01G341100 chr2A 715989637 715993566 3929 False 768.666667 837 87.682333 1 665 3 chr2A.!!$F1 664
27 TraesCS5B01G341100 chr1A 516557235 516557893 658 False 778.000000 778 87.970000 2 665 1 chr1A.!!$F2 663
28 TraesCS5B01G341100 chr1A 390100879 390102071 1192 True 303.000000 303 72.127000 1062 2248 1 chr1A.!!$R1 1186
29 TraesCS5B01G341100 chr6A 31744236 31745507 1271 True 418.000000 418 73.574000 997 2289 1 chr6A.!!$R1 1292
30 TraesCS5B01G341100 chr1D 310253185 310254153 968 True 302.000000 302 72.946000 1055 2032 1 chr1D.!!$R1 977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 4038 0.702316 AATTTTGGTCCTAGCGGGGT 59.298 50.0 0.0 0.0 35.33 4.95 F
753 4040 0.838987 TTTTGGTCCTAGCGGGGTCT 60.839 55.0 0.0 0.0 35.33 3.85 F
2640 11594 0.605589 GCTTTGTAACCCTGACCGCT 60.606 55.0 0.0 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 11584 1.120530 ACACCTTATAGCGGTCAGGG 58.879 55.0 11.05 4.49 30.82 4.45 R
2673 11657 1.298859 ACGACCGAAGCAATGGAAGC 61.299 55.0 0.00 0.00 0.00 3.86 R
3882 13011 0.099082 TTTTGTCCCGTTGAACGCAC 59.901 50.0 12.95 11.25 40.91 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 3428 6.408548 GCAGGCCAGCCTCATAATTATATCTA 60.409 42.308 9.39 0.00 46.28 1.98
214 3480 5.508200 TTTTTGCAGGATAACGTCACTTT 57.492 34.783 0.00 0.00 0.00 2.66
293 3566 6.765036 TGCAATTTTTATGAAGGCTTTGTCAA 59.235 30.769 0.00 0.00 0.00 3.18
334 3607 5.299148 CCTGAACTTTGCCATGAAAATCAA 58.701 37.500 0.00 0.00 0.00 2.57
385 3658 8.642908 AATCGAAAAGTTCTTTAAGTTTTGGG 57.357 30.769 8.07 2.14 44.49 4.12
472 3745 4.944930 TCGGAGTTTTCCAAAAGTTCTTCA 59.055 37.500 0.00 0.00 44.26 3.02
706 3993 1.301401 GCCAACAGCGTCACCTACA 60.301 57.895 0.00 0.00 0.00 2.74
707 3994 1.291877 GCCAACAGCGTCACCTACAG 61.292 60.000 0.00 0.00 0.00 2.74
708 3995 1.291877 CCAACAGCGTCACCTACAGC 61.292 60.000 0.00 0.00 0.00 4.40
709 3996 1.372997 AACAGCGTCACCTACAGCG 60.373 57.895 0.00 0.00 34.28 5.18
710 3997 2.083835 AACAGCGTCACCTACAGCGT 62.084 55.000 0.00 0.00 34.28 5.07
711 3998 1.801913 CAGCGTCACCTACAGCGTC 60.802 63.158 0.00 0.00 34.28 5.19
712 3999 2.257371 GCGTCACCTACAGCGTCA 59.743 61.111 0.00 0.00 0.00 4.35
713 4000 2.087009 GCGTCACCTACAGCGTCAC 61.087 63.158 0.00 0.00 0.00 3.67
714 4001 1.443872 CGTCACCTACAGCGTCACC 60.444 63.158 0.00 0.00 0.00 4.02
715 4002 1.863662 CGTCACCTACAGCGTCACCT 61.864 60.000 0.00 0.00 0.00 4.00
716 4003 1.171308 GTCACCTACAGCGTCACCTA 58.829 55.000 0.00 0.00 0.00 3.08
717 4004 1.135460 GTCACCTACAGCGTCACCTAC 60.135 57.143 0.00 0.00 0.00 3.18
730 4017 3.884091 CGTCACCTACTACTAGGCAAGAT 59.116 47.826 0.00 0.00 43.42 2.40
733 4020 6.039047 CGTCACCTACTACTAGGCAAGATTAA 59.961 42.308 0.00 0.00 43.42 1.40
735 4022 8.422566 GTCACCTACTACTAGGCAAGATTAATT 58.577 37.037 0.00 0.00 43.42 1.40
737 4024 9.614792 CACCTACTACTAGGCAAGATTAATTTT 57.385 33.333 0.00 0.00 43.42 1.82
751 4038 0.702316 AATTTTGGTCCTAGCGGGGT 59.298 50.000 0.00 0.00 35.33 4.95
753 4040 0.838987 TTTTGGTCCTAGCGGGGTCT 60.839 55.000 0.00 0.00 35.33 3.85
805 4092 5.552870 AGATTTAGGCGGTCAAGATACAT 57.447 39.130 0.00 0.00 0.00 2.29
811 4098 3.196901 AGGCGGTCAAGATACATGTTGTA 59.803 43.478 2.30 0.00 37.24 2.41
842 6049 3.845178 CGAAAGTAAATGGCTTTTCCCC 58.155 45.455 1.19 0.00 36.43 4.81
843 6050 3.509967 CGAAAGTAAATGGCTTTTCCCCT 59.490 43.478 1.19 0.00 36.43 4.79
844 6051 4.380550 CGAAAGTAAATGGCTTTTCCCCTC 60.381 45.833 1.19 0.00 36.43 4.30
845 6052 4.404185 AAGTAAATGGCTTTTCCCCTCT 57.596 40.909 1.19 0.00 0.00 3.69
846 6053 4.404185 AGTAAATGGCTTTTCCCCTCTT 57.596 40.909 1.19 0.00 0.00 2.85
847 6054 5.530176 AGTAAATGGCTTTTCCCCTCTTA 57.470 39.130 1.19 0.00 0.00 2.10
848 6055 5.510430 AGTAAATGGCTTTTCCCCTCTTAG 58.490 41.667 1.19 0.00 0.00 2.18
849 6056 4.675063 AAATGGCTTTTCCCCTCTTAGA 57.325 40.909 0.00 0.00 0.00 2.10
1254 9050 2.290896 TGGATACTTCAGCAACCCCTTG 60.291 50.000 0.00 0.00 37.61 3.61
1341 9140 3.181967 CGCGGCTCCGACTTCTTG 61.182 66.667 13.11 0.00 42.83 3.02
1488 9310 2.196595 CTGAATGTCTTCCCCTACCCA 58.803 52.381 0.00 0.00 0.00 4.51
2250 10937 1.103398 GCAACAAGGTGAGCCTGTGT 61.103 55.000 0.00 0.00 46.33 3.72
2377 11309 4.933400 GCATTTTGTCTTGAGGCATTGATT 59.067 37.500 0.00 0.00 0.00 2.57
2396 11330 9.734620 CATTGATTGAAAAGAGTTTGTACAAGA 57.265 29.630 8.56 0.00 0.00 3.02
2583 11535 2.173356 TGCATTGCAGTATCCTAGGCTT 59.827 45.455 7.38 0.00 33.32 4.35
2588 11541 6.183360 GCATTGCAGTATCCTAGGCTTAAAAA 60.183 38.462 2.96 0.00 0.00 1.94
2630 11584 9.840427 AATAATGTCTACACAATGCTTTGTAAC 57.160 29.630 16.71 12.76 44.24 2.50
2638 11592 1.821216 ATGCTTTGTAACCCTGACCG 58.179 50.000 0.00 0.00 0.00 4.79
2639 11593 0.887387 TGCTTTGTAACCCTGACCGC 60.887 55.000 0.00 0.00 0.00 5.68
2640 11594 0.605589 GCTTTGTAACCCTGACCGCT 60.606 55.000 0.00 0.00 0.00 5.52
2641 11595 1.338389 GCTTTGTAACCCTGACCGCTA 60.338 52.381 0.00 0.00 0.00 4.26
2642 11596 2.679930 GCTTTGTAACCCTGACCGCTAT 60.680 50.000 0.00 0.00 0.00 2.97
2643 11597 3.431207 GCTTTGTAACCCTGACCGCTATA 60.431 47.826 0.00 0.00 0.00 1.31
2644 11598 4.761975 CTTTGTAACCCTGACCGCTATAA 58.238 43.478 0.00 0.00 0.00 0.98
2645 11599 4.395959 TTGTAACCCTGACCGCTATAAG 57.604 45.455 0.00 0.00 0.00 1.73
2646 11600 2.696707 TGTAACCCTGACCGCTATAAGG 59.303 50.000 0.00 0.00 0.00 2.69
2647 11601 1.875488 AACCCTGACCGCTATAAGGT 58.125 50.000 0.00 0.00 46.16 3.50
2648 11602 1.120530 ACCCTGACCGCTATAAGGTG 58.879 55.000 4.44 0.00 43.01 4.00
2649 11603 1.120530 CCCTGACCGCTATAAGGTGT 58.879 55.000 4.44 0.00 43.01 4.16
2650 11604 1.485066 CCCTGACCGCTATAAGGTGTT 59.515 52.381 4.44 0.00 43.01 3.32
2651 11605 2.550978 CCTGACCGCTATAAGGTGTTG 58.449 52.381 4.44 0.00 43.01 3.33
2652 11606 2.550978 CTGACCGCTATAAGGTGTTGG 58.449 52.381 4.44 0.00 43.01 3.77
2653 11607 1.903860 TGACCGCTATAAGGTGTTGGT 59.096 47.619 4.44 0.00 43.01 3.67
2654 11608 2.277084 GACCGCTATAAGGTGTTGGTG 58.723 52.381 4.44 0.00 43.01 4.17
2655 11609 1.626825 ACCGCTATAAGGTGTTGGTGT 59.373 47.619 0.00 0.00 41.10 4.16
2656 11610 2.833338 ACCGCTATAAGGTGTTGGTGTA 59.167 45.455 0.00 0.00 41.10 2.90
2657 11611 3.118884 ACCGCTATAAGGTGTTGGTGTAG 60.119 47.826 0.00 0.00 41.10 2.74
2658 11612 2.864343 CGCTATAAGGTGTTGGTGTAGC 59.136 50.000 0.00 0.00 0.00 3.58
2659 11613 3.677700 CGCTATAAGGTGTTGGTGTAGCA 60.678 47.826 0.00 0.00 34.32 3.49
2673 11657 7.064134 TGTTGGTGTAGCAAATATCTTACTTCG 59.936 37.037 0.00 0.00 0.00 3.79
2746 11817 7.416154 TTTAAAAGATCTGTCTTGTACCACG 57.584 36.000 0.00 0.00 43.80 4.94
2749 11820 4.602340 AGATCTGTCTTGTACCACGTTT 57.398 40.909 0.00 0.00 0.00 3.60
2778 11849 5.941948 ATAACCTTGCACAGTTTGTCTAC 57.058 39.130 5.90 0.00 0.00 2.59
2810 11888 8.283291 CACTTGAATCCTTACTTACACTGAAAC 58.717 37.037 0.00 0.00 0.00 2.78
2843 11921 5.877564 GTCTCAGGAGGATTTAGAAACCAAG 59.122 44.000 0.00 0.00 0.00 3.61
2855 11933 6.503560 TTAGAAACCAAGGTTACTGGAGAA 57.496 37.500 4.68 0.00 37.35 2.87
2867 11945 3.228188 ACTGGAGAAAATGTGGCAGAA 57.772 42.857 0.00 0.00 0.00 3.02
2884 11962 0.257039 GAAGATGGTCCTGTGGGCAT 59.743 55.000 0.00 0.00 0.00 4.40
2999 12077 7.051000 AGGCATTTCTACTTTCTATTGAGGAC 58.949 38.462 0.00 0.00 0.00 3.85
3039 12149 0.315568 ATCTCGAGGATAAGTGCCGC 59.684 55.000 13.56 0.00 32.04 6.53
3084 12196 4.382577 GGAAGAAAGAGAGAGGTGATGACC 60.383 50.000 0.00 0.00 43.52 4.02
3098 12214 2.154462 GATGACCAGTTGACCCACTTG 58.846 52.381 0.00 0.00 0.00 3.16
3099 12215 0.916086 TGACCAGTTGACCCACTTGT 59.084 50.000 0.00 0.00 0.00 3.16
3100 12216 1.283613 TGACCAGTTGACCCACTTGTT 59.716 47.619 0.00 0.00 0.00 2.83
3158 12274 6.127647 TGGTGTATTTCTTTCAATGAGATGGC 60.128 38.462 0.00 0.00 0.00 4.40
3169 12285 6.271488 TCAATGAGATGGCCTTTTGTTTAG 57.729 37.500 3.32 0.00 0.00 1.85
3184 12300 7.647715 CCTTTTGTTTAGATGTGTTGGTACTTG 59.352 37.037 0.00 0.00 0.00 3.16
3185 12301 6.627395 TTGTTTAGATGTGTTGGTACTTGG 57.373 37.500 0.00 0.00 0.00 3.61
3186 12302 5.686753 TGTTTAGATGTGTTGGTACTTGGT 58.313 37.500 0.00 0.00 0.00 3.67
3187 12303 6.828788 TGTTTAGATGTGTTGGTACTTGGTA 58.171 36.000 0.00 0.00 0.00 3.25
3188 12304 6.707161 TGTTTAGATGTGTTGGTACTTGGTAC 59.293 38.462 0.00 0.00 38.19 3.34
3189 12305 6.675413 TTAGATGTGTTGGTACTTGGTACT 57.325 37.500 7.60 0.00 38.85 2.73
3190 12306 5.562298 AGATGTGTTGGTACTTGGTACTT 57.438 39.130 7.60 0.00 38.85 2.24
3206 12331 6.783708 TGGTACTTTGGTTTTTGAGACAAT 57.216 33.333 0.00 0.00 0.00 2.71
3220 12345 5.603170 TGAGACAATCATCATGTGCTAGA 57.397 39.130 0.00 0.00 31.12 2.43
3239 12364 3.973425 AGATTCAAATGCTTGTAGGGCT 58.027 40.909 0.00 0.00 33.94 5.19
3243 12368 3.230134 TCAAATGCTTGTAGGGCTTGTT 58.770 40.909 0.00 0.00 33.94 2.83
3245 12370 4.100808 TCAAATGCTTGTAGGGCTTGTTTT 59.899 37.500 0.00 0.00 33.94 2.43
3270 12395 3.477210 TTTTGAAATTTTCACCGGGGG 57.523 42.857 11.30 0.00 39.87 5.40
3272 12397 1.917872 TGAAATTTTCACCGGGGGAG 58.082 50.000 2.42 0.00 34.08 4.30
3274 12399 0.781278 AAATTTTCACCGGGGGAGGA 59.219 50.000 2.42 0.00 34.73 3.71
3275 12400 0.331616 AATTTTCACCGGGGGAGGAG 59.668 55.000 2.42 0.00 34.73 3.69
3276 12401 1.571773 ATTTTCACCGGGGGAGGAGG 61.572 60.000 2.42 0.00 34.73 4.30
3277 12402 4.733725 TTCACCGGGGGAGGAGGG 62.734 72.222 2.42 0.00 34.73 4.30
3296 12421 4.366684 GGCCCCCTCAACCACCTG 62.367 72.222 0.00 0.00 0.00 4.00
3297 12422 3.256960 GCCCCCTCAACCACCTGA 61.257 66.667 0.00 0.00 0.00 3.86
3298 12423 2.840753 GCCCCCTCAACCACCTGAA 61.841 63.158 0.00 0.00 0.00 3.02
3299 12424 2.087248 CCCCCTCAACCACCTGAAT 58.913 57.895 0.00 0.00 0.00 2.57
3300 12425 1.295020 CCCCCTCAACCACCTGAATA 58.705 55.000 0.00 0.00 0.00 1.75
3301 12426 1.852965 CCCCCTCAACCACCTGAATAT 59.147 52.381 0.00 0.00 0.00 1.28
3302 12427 3.053077 CCCCCTCAACCACCTGAATATA 58.947 50.000 0.00 0.00 0.00 0.86
3303 12428 3.657727 CCCCCTCAACCACCTGAATATAT 59.342 47.826 0.00 0.00 0.00 0.86
3304 12429 4.106341 CCCCCTCAACCACCTGAATATATT 59.894 45.833 0.00 0.00 0.00 1.28
3305 12430 5.316987 CCCCTCAACCACCTGAATATATTC 58.683 45.833 17.09 17.09 37.31 1.75
3306 12431 5.316987 CCCTCAACCACCTGAATATATTCC 58.683 45.833 20.29 5.68 35.97 3.01
3307 12432 5.163099 CCCTCAACCACCTGAATATATTCCA 60.163 44.000 20.29 9.41 35.97 3.53
3308 12433 6.467775 CCCTCAACCACCTGAATATATTCCAT 60.468 42.308 20.29 5.42 35.97 3.41
3309 12434 6.656693 CCTCAACCACCTGAATATATTCCATC 59.343 42.308 20.29 0.00 35.97 3.51
3310 12435 7.147958 TCAACCACCTGAATATATTCCATCA 57.852 36.000 20.29 4.14 35.97 3.07
3311 12436 7.581814 TCAACCACCTGAATATATTCCATCAA 58.418 34.615 20.29 3.16 35.97 2.57
3312 12437 8.058235 TCAACCACCTGAATATATTCCATCAAA 58.942 33.333 20.29 2.51 35.97 2.69
3313 12438 8.863086 CAACCACCTGAATATATTCCATCAAAT 58.137 33.333 20.29 2.64 35.97 2.32
3314 12439 9.438163 AACCACCTGAATATATTCCATCAAATT 57.562 29.630 20.29 6.54 35.97 1.82
3315 12440 9.438163 ACCACCTGAATATATTCCATCAAATTT 57.562 29.630 20.29 0.00 35.97 1.82
3316 12441 9.701098 CCACCTGAATATATTCCATCAAATTTG 57.299 33.333 20.29 12.15 35.97 2.32
3317 12442 9.199982 CACCTGAATATATTCCATCAAATTTGC 57.800 33.333 20.29 0.00 35.97 3.68
3318 12443 8.370182 ACCTGAATATATTCCATCAAATTTGCC 58.630 33.333 20.29 0.00 35.97 4.52
3319 12444 8.591072 CCTGAATATATTCCATCAAATTTGCCT 58.409 33.333 20.29 0.38 35.97 4.75
3325 12450 4.989279 TCCATCAAATTTGCCTAGAAGC 57.011 40.909 13.54 0.00 0.00 3.86
3326 12451 3.701040 TCCATCAAATTTGCCTAGAAGCC 59.299 43.478 13.54 0.00 0.00 4.35
3327 12452 3.703052 CCATCAAATTTGCCTAGAAGCCT 59.297 43.478 13.54 0.00 0.00 4.58
3328 12453 4.202090 CCATCAAATTTGCCTAGAAGCCTC 60.202 45.833 13.54 0.00 0.00 4.70
3329 12454 3.009723 TCAAATTTGCCTAGAAGCCTCG 58.990 45.455 13.54 0.00 0.00 4.63
3330 12455 1.383523 AATTTGCCTAGAAGCCTCGC 58.616 50.000 0.00 0.00 0.00 5.03
3331 12456 0.253044 ATTTGCCTAGAAGCCTCGCA 59.747 50.000 0.00 0.00 0.00 5.10
3332 12457 0.391661 TTTGCCTAGAAGCCTCGCAG 60.392 55.000 0.00 0.00 31.87 5.18
3333 12458 2.587473 GCCTAGAAGCCTCGCAGC 60.587 66.667 0.00 0.00 0.00 5.25
3335 12460 1.067250 CCTAGAAGCCTCGCAGCTC 59.933 63.158 0.00 0.00 44.11 4.09
3336 12461 1.067250 CTAGAAGCCTCGCAGCTCC 59.933 63.158 0.00 0.00 44.11 4.70
3337 12462 1.670949 CTAGAAGCCTCGCAGCTCCA 61.671 60.000 0.00 0.00 44.11 3.86
3338 12463 1.045350 TAGAAGCCTCGCAGCTCCAT 61.045 55.000 0.00 0.00 44.11 3.41
3339 12464 1.045350 AGAAGCCTCGCAGCTCCATA 61.045 55.000 0.00 0.00 44.11 2.74
3340 12465 0.878086 GAAGCCTCGCAGCTCCATAC 60.878 60.000 0.00 0.00 44.11 2.39
3341 12466 1.617018 AAGCCTCGCAGCTCCATACA 61.617 55.000 0.00 0.00 44.11 2.29
3342 12467 1.593750 GCCTCGCAGCTCCATACAG 60.594 63.158 0.00 0.00 0.00 2.74
3343 12468 1.068753 CCTCGCAGCTCCATACAGG 59.931 63.158 0.00 0.00 39.47 4.00
3344 12469 1.395045 CCTCGCAGCTCCATACAGGA 61.395 60.000 0.00 0.00 46.75 3.86
3356 12481 5.614324 TCCATACAGGATAGGTTCAAGTG 57.386 43.478 0.00 0.00 43.07 3.16
3357 12482 5.277250 TCCATACAGGATAGGTTCAAGTGA 58.723 41.667 0.00 0.00 43.07 3.41
3358 12483 5.724370 TCCATACAGGATAGGTTCAAGTGAA 59.276 40.000 0.00 0.00 43.07 3.18
3359 12484 5.817816 CCATACAGGATAGGTTCAAGTGAAC 59.182 44.000 14.53 14.53 46.05 3.18
3385 12510 7.203910 CAGAATGTAACCATCAGTAGGAGTAC 58.796 42.308 0.00 0.00 0.00 2.73
3386 12511 5.769484 ATGTAACCATCAGTAGGAGTACG 57.231 43.478 0.00 0.00 33.97 3.67
3387 12512 4.592942 TGTAACCATCAGTAGGAGTACGT 58.407 43.478 0.00 0.00 33.97 3.57
3388 12513 5.744171 TGTAACCATCAGTAGGAGTACGTA 58.256 41.667 0.00 0.00 33.97 3.57
3394 12519 4.644103 TCAGTAGGAGTACGTATTTGGC 57.356 45.455 0.00 0.00 33.97 4.52
3415 12540 4.440880 GCAATATGGCCACTTAATTTGCA 58.559 39.130 8.16 0.00 38.40 4.08
3416 12541 5.058490 GCAATATGGCCACTTAATTTGCAT 58.942 37.500 8.16 0.00 38.40 3.96
3417 12542 5.178067 GCAATATGGCCACTTAATTTGCATC 59.822 40.000 8.16 0.00 38.40 3.91
3418 12543 6.518493 CAATATGGCCACTTAATTTGCATCT 58.482 36.000 8.16 0.00 0.00 2.90
3419 12544 6.736110 ATATGGCCACTTAATTTGCATCTT 57.264 33.333 8.16 0.00 0.00 2.40
3420 12545 7.838079 ATATGGCCACTTAATTTGCATCTTA 57.162 32.000 8.16 0.00 0.00 2.10
3421 12546 5.991933 TGGCCACTTAATTTGCATCTTAA 57.008 34.783 0.00 0.00 0.00 1.85
3453 12580 1.308998 CTTGTCTGTTGTGGGTCCAC 58.691 55.000 12.89 12.89 46.33 4.02
3499 12626 6.366061 GTGATCCTGTCCTTTTTATTGTTTGC 59.634 38.462 0.00 0.00 0.00 3.68
3515 12642 0.768221 TTGCCTGGGTCTCAAGTCCT 60.768 55.000 0.00 0.00 0.00 3.85
3519 12646 2.508526 CCTGGGTCTCAAGTCCTTTTG 58.491 52.381 0.00 0.00 0.00 2.44
3530 12657 6.017109 TCTCAAGTCCTTTTGTAGCATTGTTC 60.017 38.462 0.00 0.00 0.00 3.18
3558 12685 0.031616 TGGGGCAGTTGGTTTCCTTT 60.032 50.000 0.00 0.00 0.00 3.11
3572 12699 4.098807 GGTTTCCTTTTGCTTGGTCTTACA 59.901 41.667 0.00 0.00 0.00 2.41
3611 12738 1.584175 TTGCTTCGGTCAACGCTAAA 58.416 45.000 0.00 0.00 43.86 1.85
3639 12766 7.030234 ACGTATCCTGTATTATACTCCCTCT 57.970 40.000 3.92 0.00 0.00 3.69
3641 12768 6.183360 CGTATCCTGTATTATACTCCCTCTGC 60.183 46.154 3.92 0.00 0.00 4.26
3645 12772 5.279708 CCTGTATTATACTCCCTCTGCTTGG 60.280 48.000 3.92 0.00 0.00 3.61
3667 12794 6.940739 TGGAAAAACTTGTTGGAGAAATTGA 58.059 32.000 0.00 0.00 0.00 2.57
3722 12849 6.016192 TGTCTAGATACATCCATTTCTCCGAC 60.016 42.308 0.00 0.00 0.00 4.79
3738 12865 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3745 12872 0.259647 TATTTCCGGACGGAGGGAGA 59.740 55.000 13.64 0.00 46.06 3.71
3748 12875 3.148279 CCGGACGGAGGGAGAAGG 61.148 72.222 4.40 0.00 37.50 3.46
3751 12879 1.457009 CGGACGGAGGGAGAAGGATC 61.457 65.000 0.00 0.00 0.00 3.36
3777 12905 9.144747 CTGTAGCCTTGCACAGTTATTATATAG 57.855 37.037 0.00 0.00 35.05 1.31
3786 12914 8.360390 TGCACAGTTATTATATAGAGACACCTG 58.640 37.037 0.00 0.00 0.00 4.00
3802 12930 6.357367 AGACACCTGAAACTTCAATTACACT 58.643 36.000 0.00 0.00 36.64 3.55
3821 12950 9.725019 ATTACACTGAAGTCATTTTATGTCTCA 57.275 29.630 0.00 0.00 0.00 3.27
3867 12996 4.218417 ACTGGATGGCAGTTTAAATGTCAC 59.782 41.667 0.82 0.00 34.60 3.67
3868 12997 4.406456 TGGATGGCAGTTTAAATGTCACT 58.594 39.130 0.82 0.00 34.60 3.41
3869 12998 5.565509 TGGATGGCAGTTTAAATGTCACTA 58.434 37.500 0.82 0.00 34.60 2.74
3870 12999 5.647658 TGGATGGCAGTTTAAATGTCACTAG 59.352 40.000 0.82 0.00 34.60 2.57
3871 13000 5.449177 GGATGGCAGTTTAAATGTCACTAGC 60.449 44.000 0.82 0.00 34.60 3.42
3872 13001 4.393834 TGGCAGTTTAAATGTCACTAGCA 58.606 39.130 0.00 0.00 0.00 3.49
3873 13002 4.824537 TGGCAGTTTAAATGTCACTAGCAA 59.175 37.500 0.00 0.00 0.00 3.91
3874 13003 5.300539 TGGCAGTTTAAATGTCACTAGCAAA 59.699 36.000 0.00 0.00 0.00 3.68
3875 13004 6.183360 TGGCAGTTTAAATGTCACTAGCAAAA 60.183 34.615 0.00 0.00 0.00 2.44
3876 13005 6.363357 GGCAGTTTAAATGTCACTAGCAAAAG 59.637 38.462 0.00 0.00 0.00 2.27
3877 13006 7.138736 GCAGTTTAAATGTCACTAGCAAAAGA 58.861 34.615 0.00 0.00 0.00 2.52
3878 13007 7.324616 GCAGTTTAAATGTCACTAGCAAAAGAG 59.675 37.037 0.00 0.00 0.00 2.85
3879 13008 7.324616 CAGTTTAAATGTCACTAGCAAAAGAGC 59.675 37.037 0.00 0.00 0.00 4.09
3880 13009 4.773323 AAATGTCACTAGCAAAAGAGCC 57.227 40.909 0.00 0.00 34.23 4.70
3881 13010 2.185004 TGTCACTAGCAAAAGAGCCC 57.815 50.000 0.00 0.00 34.23 5.19
3882 13011 1.079503 GTCACTAGCAAAAGAGCCCG 58.920 55.000 0.00 0.00 34.23 6.13
3883 13012 0.685097 TCACTAGCAAAAGAGCCCGT 59.315 50.000 0.00 0.00 34.23 5.28
3884 13013 0.798776 CACTAGCAAAAGAGCCCGTG 59.201 55.000 0.00 0.00 34.23 4.94
3885 13014 0.955919 ACTAGCAAAAGAGCCCGTGC 60.956 55.000 0.00 0.00 37.26 5.34
3886 13015 1.970917 CTAGCAAAAGAGCCCGTGCG 61.971 60.000 0.00 0.00 44.33 5.34
3887 13016 2.725203 TAGCAAAAGAGCCCGTGCGT 62.725 55.000 0.00 0.00 44.33 5.24
3888 13017 3.030652 CAAAAGAGCCCGTGCGTT 58.969 55.556 0.00 0.00 44.33 4.84
3889 13018 1.082104 CAAAAGAGCCCGTGCGTTC 60.082 57.895 0.00 0.00 44.33 3.95
3890 13019 1.525077 AAAAGAGCCCGTGCGTTCA 60.525 52.632 0.00 0.00 44.33 3.18
3891 13020 1.098712 AAAAGAGCCCGTGCGTTCAA 61.099 50.000 0.00 0.00 44.33 2.69
3892 13021 1.782028 AAAGAGCCCGTGCGTTCAAC 61.782 55.000 0.00 0.00 44.33 3.18
3893 13022 4.072088 GAGCCCGTGCGTTCAACG 62.072 66.667 5.28 5.28 45.88 4.10
3897 13026 3.708734 CCGTGCGTTCAACGGGAC 61.709 66.667 12.81 3.12 42.82 4.46
3898 13027 2.962786 CGTGCGTTCAACGGGACA 60.963 61.111 12.81 0.00 42.82 4.02
3899 13028 2.526993 CGTGCGTTCAACGGGACAA 61.527 57.895 12.81 0.00 42.82 3.18
3900 13029 1.722677 GTGCGTTCAACGGGACAAA 59.277 52.632 12.81 0.00 42.82 2.83
3901 13030 0.099082 GTGCGTTCAACGGGACAAAA 59.901 50.000 12.81 0.00 42.82 2.44
3902 13031 0.809385 TGCGTTCAACGGGACAAAAA 59.191 45.000 12.81 0.00 42.82 1.94
3903 13032 1.405821 TGCGTTCAACGGGACAAAAAT 59.594 42.857 12.81 0.00 42.82 1.82
3904 13033 2.617308 TGCGTTCAACGGGACAAAAATA 59.383 40.909 12.81 0.00 42.82 1.40
3905 13034 3.066342 TGCGTTCAACGGGACAAAAATAA 59.934 39.130 12.81 0.00 42.82 1.40
3906 13035 4.231439 GCGTTCAACGGGACAAAAATAAT 58.769 39.130 12.81 0.00 42.82 1.28
3907 13036 5.048921 TGCGTTCAACGGGACAAAAATAATA 60.049 36.000 12.81 0.00 42.82 0.98
3908 13037 5.510323 GCGTTCAACGGGACAAAAATAATAG 59.490 40.000 12.81 0.00 42.82 1.73
3909 13038 6.604930 CGTTCAACGGGACAAAAATAATAGT 58.395 36.000 0.61 0.00 38.08 2.12
3910 13039 7.079475 CGTTCAACGGGACAAAAATAATAGTT 58.921 34.615 0.61 0.00 38.08 2.24
3911 13040 7.269724 CGTTCAACGGGACAAAAATAATAGTTC 59.730 37.037 0.61 0.00 38.08 3.01
3912 13041 7.989416 TCAACGGGACAAAAATAATAGTTCT 57.011 32.000 0.00 0.00 0.00 3.01
3913 13042 7.812648 TCAACGGGACAAAAATAATAGTTCTG 58.187 34.615 0.00 0.00 0.00 3.02
3914 13043 7.446013 TCAACGGGACAAAAATAATAGTTCTGT 59.554 33.333 0.00 0.00 30.48 3.41
3915 13044 7.373778 ACGGGACAAAAATAATAGTTCTGTC 57.626 36.000 0.00 0.00 0.00 3.51
3916 13045 6.373495 ACGGGACAAAAATAATAGTTCTGTCC 59.627 38.462 15.32 15.32 46.92 4.02
3927 13056 8.910351 ATAATAGTTCTGTCCATTTTCCTAGC 57.090 34.615 0.00 0.00 0.00 3.42
3928 13057 4.917906 AGTTCTGTCCATTTTCCTAGCT 57.082 40.909 0.00 0.00 0.00 3.32
3929 13058 4.837972 AGTTCTGTCCATTTTCCTAGCTC 58.162 43.478 0.00 0.00 0.00 4.09
3930 13059 4.287067 AGTTCTGTCCATTTTCCTAGCTCA 59.713 41.667 0.00 0.00 0.00 4.26
3931 13060 4.908601 TCTGTCCATTTTCCTAGCTCAA 57.091 40.909 0.00 0.00 0.00 3.02
3932 13061 5.441718 TCTGTCCATTTTCCTAGCTCAAT 57.558 39.130 0.00 0.00 0.00 2.57
3933 13062 6.560003 TCTGTCCATTTTCCTAGCTCAATA 57.440 37.500 0.00 0.00 0.00 1.90
3934 13063 6.957631 TCTGTCCATTTTCCTAGCTCAATAA 58.042 36.000 0.00 0.00 0.00 1.40
3935 13064 7.577303 TCTGTCCATTTTCCTAGCTCAATAAT 58.423 34.615 0.00 0.00 0.00 1.28
3936 13065 7.500227 TCTGTCCATTTTCCTAGCTCAATAATG 59.500 37.037 0.00 0.00 0.00 1.90
3937 13066 7.118723 TGTCCATTTTCCTAGCTCAATAATGT 58.881 34.615 0.00 0.00 0.00 2.71
3938 13067 7.067372 TGTCCATTTTCCTAGCTCAATAATGTG 59.933 37.037 0.00 0.00 0.00 3.21
3939 13068 7.283127 GTCCATTTTCCTAGCTCAATAATGTGA 59.717 37.037 0.00 0.00 0.00 3.58
3940 13069 7.833682 TCCATTTTCCTAGCTCAATAATGTGAA 59.166 33.333 0.00 0.00 0.00 3.18
3941 13070 8.636213 CCATTTTCCTAGCTCAATAATGTGAAT 58.364 33.333 0.00 0.00 0.00 2.57
3970 13099 9.712359 AAAGAATGACTTTGTTTACTAACGAAC 57.288 29.630 0.00 0.00 45.66 3.95
3971 13100 8.428186 AGAATGACTTTGTTTACTAACGAACA 57.572 30.769 0.00 0.00 37.06 3.18
3972 13101 8.885722 AGAATGACTTTGTTTACTAACGAACAA 58.114 29.630 0.00 0.00 42.23 2.83
3981 13110 9.622004 TTGTTTACTAACGAACAAAAATGTTGA 57.378 25.926 0.00 0.00 41.33 3.18
3982 13111 9.622004 TGTTTACTAACGAACAAAAATGTTGAA 57.378 25.926 0.00 0.00 37.06 2.69
4001 13130 8.392124 TGTTGAATAATGTATGAAAATGCACG 57.608 30.769 0.00 0.00 0.00 5.34
4002 13131 7.487509 TGTTGAATAATGTATGAAAATGCACGG 59.512 33.333 0.00 0.00 0.00 4.94
4003 13132 7.326968 TGAATAATGTATGAAAATGCACGGA 57.673 32.000 0.00 0.00 0.00 4.69
4004 13133 7.766283 TGAATAATGTATGAAAATGCACGGAA 58.234 30.769 0.00 0.00 0.00 4.30
4005 13134 8.412456 TGAATAATGTATGAAAATGCACGGAAT 58.588 29.630 0.00 0.00 0.00 3.01
4006 13135 9.248291 GAATAATGTATGAAAATGCACGGAATT 57.752 29.630 0.00 0.00 0.00 2.17
4007 13136 8.801715 ATAATGTATGAAAATGCACGGAATTC 57.198 30.769 0.00 0.00 0.00 2.17
4008 13137 5.635417 TGTATGAAAATGCACGGAATTCA 57.365 34.783 7.93 0.00 34.80 2.57
4009 13138 6.018589 TGTATGAAAATGCACGGAATTCAA 57.981 33.333 7.93 0.00 34.09 2.69
4010 13139 5.861251 TGTATGAAAATGCACGGAATTCAAC 59.139 36.000 7.93 0.00 34.09 3.18
4011 13140 4.313277 TGAAAATGCACGGAATTCAACA 57.687 36.364 7.93 0.00 0.00 3.33
4012 13141 4.880759 TGAAAATGCACGGAATTCAACAT 58.119 34.783 7.93 2.16 0.00 2.71
4013 13142 5.295950 TGAAAATGCACGGAATTCAACATT 58.704 33.333 7.93 7.99 0.00 2.71
4014 13143 6.450545 TGAAAATGCACGGAATTCAACATTA 58.549 32.000 7.93 0.00 0.00 1.90
4015 13144 6.925718 TGAAAATGCACGGAATTCAACATTAA 59.074 30.769 7.93 0.00 0.00 1.40
4016 13145 7.601886 TGAAAATGCACGGAATTCAACATTAAT 59.398 29.630 7.93 4.45 0.00 1.40
4017 13146 8.994429 AAAATGCACGGAATTCAACATTAATA 57.006 26.923 7.93 0.00 0.00 0.98
4018 13147 7.985634 AATGCACGGAATTCAACATTAATAC 57.014 32.000 7.93 0.00 0.00 1.89
4019 13148 6.502136 TGCACGGAATTCAACATTAATACA 57.498 33.333 7.93 0.00 0.00 2.29
4020 13149 6.914259 TGCACGGAATTCAACATTAATACAA 58.086 32.000 7.93 0.00 0.00 2.41
4021 13150 7.026562 TGCACGGAATTCAACATTAATACAAG 58.973 34.615 7.93 0.00 0.00 3.16
4022 13151 6.020678 GCACGGAATTCAACATTAATACAAGC 60.021 38.462 7.93 0.00 0.00 4.01
4023 13152 7.026562 CACGGAATTCAACATTAATACAAGCA 58.973 34.615 7.93 0.00 0.00 3.91
4024 13153 7.701924 CACGGAATTCAACATTAATACAAGCAT 59.298 33.333 7.93 0.00 0.00 3.79
4025 13154 8.250332 ACGGAATTCAACATTAATACAAGCATT 58.750 29.630 7.93 0.00 0.00 3.56
4026 13155 9.086336 CGGAATTCAACATTAATACAAGCATTT 57.914 29.630 7.93 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 3428 2.102588 AGCGACGTTAATTATCCAGGCT 59.897 45.455 0.00 0.00 0.00 4.58
293 3566 4.922206 TCAGGCACATCCTTCATAAAGTT 58.078 39.130 0.00 0.00 44.75 2.66
363 3636 6.474427 GTCCCCAAAACTTAAAGAACTTTTCG 59.526 38.462 5.14 0.77 34.23 3.46
376 3649 3.445987 TGGAACTTTGTCCCCAAAACTT 58.554 40.909 0.00 0.00 39.95 2.66
385 3658 9.549078 TTTAACCATATTTTTGGAACTTTGTCC 57.451 29.630 0.00 0.00 39.25 4.02
417 3690 9.405587 CTCGCAATTTTTGAAAAATAGGTAGAA 57.594 29.630 15.45 0.00 0.00 2.10
665 3940 9.650714 TGGCTAGTCTTATCCAGTAGTAATTAA 57.349 33.333 0.00 0.00 0.00 1.40
680 3967 1.890489 TGACGCTGTTGGCTAGTCTTA 59.110 47.619 0.00 0.00 39.13 2.10
714 4001 9.614792 ACCAAAATTAATCTTGCCTAGTAGTAG 57.385 33.333 0.00 0.00 0.00 2.57
715 4002 9.609346 GACCAAAATTAATCTTGCCTAGTAGTA 57.391 33.333 0.00 0.00 0.00 1.82
716 4003 7.556635 GGACCAAAATTAATCTTGCCTAGTAGT 59.443 37.037 0.00 0.00 0.00 2.73
717 4004 7.775561 AGGACCAAAATTAATCTTGCCTAGTAG 59.224 37.037 0.00 0.00 0.00 2.57
730 4017 2.309458 ACCCCGCTAGGACCAAAATTAA 59.691 45.455 0.00 0.00 41.02 1.40
733 4020 0.255033 GACCCCGCTAGGACCAAAAT 59.745 55.000 0.00 0.00 41.02 1.82
735 4022 0.838987 AAGACCCCGCTAGGACCAAA 60.839 55.000 0.00 0.00 41.02 3.28
737 4024 1.229400 AAAGACCCCGCTAGGACCA 60.229 57.895 0.00 0.00 41.02 4.02
751 4038 5.308014 TGCATGTGAGAAAGCTAAGAAAGA 58.692 37.500 0.00 0.00 0.00 2.52
753 4040 5.706833 TGATGCATGTGAGAAAGCTAAGAAA 59.293 36.000 2.46 0.00 0.00 2.52
805 4092 1.284657 TTCGCGTTCCGTTTACAACA 58.715 45.000 5.77 0.00 38.35 3.33
811 4098 3.547601 CATTTACTTTCGCGTTCCGTTT 58.452 40.909 5.77 0.00 38.35 3.60
842 6049 2.834549 TCAGCTTGGAACCCTCTAAGAG 59.165 50.000 2.77 0.00 41.47 2.85
843 6050 2.902608 TCAGCTTGGAACCCTCTAAGA 58.097 47.619 2.77 0.00 41.47 2.10
844 6051 3.703001 TTCAGCTTGGAACCCTCTAAG 57.297 47.619 0.00 0.00 41.77 2.18
845 6052 3.650942 TCTTTCAGCTTGGAACCCTCTAA 59.349 43.478 0.00 0.00 0.00 2.10
846 6053 3.248024 TCTTTCAGCTTGGAACCCTCTA 58.752 45.455 0.00 0.00 0.00 2.43
847 6054 2.057922 TCTTTCAGCTTGGAACCCTCT 58.942 47.619 0.00 0.00 0.00 3.69
848 6055 2.568623 TCTTTCAGCTTGGAACCCTC 57.431 50.000 0.00 0.00 0.00 4.30
849 6056 2.175715 ACTTCTTTCAGCTTGGAACCCT 59.824 45.455 0.00 0.00 0.00 4.34
1224 9020 4.033009 TGCTGAAGTATCCAAGGATCTGA 58.967 43.478 4.57 0.00 36.17 3.27
1335 9134 2.685100 GGTAGACGGGTGAACAAGAAG 58.315 52.381 0.00 0.00 0.00 2.85
1519 9347 4.944048 TCCGAGAAGATGATGCGAAAATA 58.056 39.130 0.00 0.00 0.00 1.40
2124 10793 3.511540 GGCAAAAGGATAGGAAGCACTTT 59.488 43.478 0.00 0.00 33.19 2.66
2250 10937 4.571372 AAATTTTACCGGCGTCTTGAAA 57.429 36.364 6.01 0.00 0.00 2.69
2377 11309 7.338196 TGACCAATCTTGTACAAACTCTTTTCA 59.662 33.333 10.03 4.79 0.00 2.69
2396 11330 5.612725 ACCAACTCAAACAATTGACCAAT 57.387 34.783 13.59 0.00 40.59 3.16
2397 11331 5.413309 AACCAACTCAAACAATTGACCAA 57.587 34.783 13.59 0.00 40.59 3.67
2597 11550 9.231297 AGCATTGTGTAGACATTATTTTAGTGT 57.769 29.630 0.00 0.00 30.13 3.55
2630 11584 1.120530 ACACCTTATAGCGGTCAGGG 58.879 55.000 11.05 4.49 30.82 4.45
2638 11592 3.869065 TGCTACACCAACACCTTATAGC 58.131 45.455 0.00 0.00 35.28 2.97
2639 11593 8.677148 ATATTTGCTACACCAACACCTTATAG 57.323 34.615 0.00 0.00 0.00 1.31
2640 11594 8.491134 AGATATTTGCTACACCAACACCTTATA 58.509 33.333 0.00 0.00 0.00 0.98
2641 11595 7.346471 AGATATTTGCTACACCAACACCTTAT 58.654 34.615 0.00 0.00 0.00 1.73
2642 11596 6.717289 AGATATTTGCTACACCAACACCTTA 58.283 36.000 0.00 0.00 0.00 2.69
2643 11597 5.570320 AGATATTTGCTACACCAACACCTT 58.430 37.500 0.00 0.00 0.00 3.50
2644 11598 5.179452 AGATATTTGCTACACCAACACCT 57.821 39.130 0.00 0.00 0.00 4.00
2645 11599 5.897377 AAGATATTTGCTACACCAACACC 57.103 39.130 0.00 0.00 0.00 4.16
2646 11600 7.611213 AGTAAGATATTTGCTACACCAACAC 57.389 36.000 0.00 0.00 0.00 3.32
2647 11601 7.064134 CGAAGTAAGATATTTGCTACACCAACA 59.936 37.037 0.00 0.00 0.00 3.33
2648 11602 7.399523 CGAAGTAAGATATTTGCTACACCAAC 58.600 38.462 0.00 0.00 0.00 3.77
2649 11603 6.036735 GCGAAGTAAGATATTTGCTACACCAA 59.963 38.462 0.00 0.00 33.75 3.67
2650 11604 5.522460 GCGAAGTAAGATATTTGCTACACCA 59.478 40.000 0.00 0.00 33.75 4.17
2651 11605 5.753921 AGCGAAGTAAGATATTTGCTACACC 59.246 40.000 0.00 0.00 42.93 4.16
2652 11606 6.830114 AGCGAAGTAAGATATTTGCTACAC 57.170 37.500 0.00 0.00 42.93 2.90
2653 11607 6.479001 GGAAGCGAAGTAAGATATTTGCTACA 59.521 38.462 0.35 0.00 43.75 2.74
2654 11608 6.479001 TGGAAGCGAAGTAAGATATTTGCTAC 59.521 38.462 0.35 0.00 43.75 3.58
2655 11609 6.578944 TGGAAGCGAAGTAAGATATTTGCTA 58.421 36.000 0.35 0.00 43.75 3.49
2656 11610 5.428253 TGGAAGCGAAGTAAGATATTTGCT 58.572 37.500 0.00 0.00 45.92 3.91
2657 11611 5.734855 TGGAAGCGAAGTAAGATATTTGC 57.265 39.130 0.00 0.00 36.28 3.68
2658 11612 6.634436 GCAATGGAAGCGAAGTAAGATATTTG 59.366 38.462 0.00 0.00 0.00 2.32
2659 11613 6.543831 AGCAATGGAAGCGAAGTAAGATATTT 59.456 34.615 0.00 0.00 37.01 1.40
2673 11657 1.298859 ACGACCGAAGCAATGGAAGC 61.299 55.000 0.00 0.00 0.00 3.86
2746 11817 5.181690 TGTGCAAGGTTATTGACTCAAAC 57.818 39.130 0.00 0.00 0.00 2.93
2749 11820 4.085357 ACTGTGCAAGGTTATTGACTCA 57.915 40.909 0.00 0.00 0.00 3.41
2778 11849 7.855904 GTGTAAGTAAGGATTCAAGTGTTTGTG 59.144 37.037 0.00 0.00 35.73 3.33
2810 11888 8.213679 TCTAAATCCTCCTGAGACATAAAATGG 58.786 37.037 0.00 0.00 33.60 3.16
2843 11921 3.153919 TGCCACATTTTCTCCAGTAACC 58.846 45.455 0.00 0.00 0.00 2.85
2855 11933 2.042162 AGGACCATCTTCTGCCACATTT 59.958 45.455 0.00 0.00 0.00 2.32
2867 11945 1.135094 CTATGCCCACAGGACCATCT 58.865 55.000 0.00 0.00 33.47 2.90
2884 11962 5.602978 ACAAGAACAGAGGGAGTTTCTTCTA 59.397 40.000 0.00 0.00 0.00 2.10
3039 12149 4.500545 CCCTTCTCTCGTAGTCATCAATGG 60.501 50.000 0.00 0.00 0.00 3.16
3084 12196 1.202405 GGCAAACAAGTGGGTCAACTG 60.202 52.381 0.00 0.00 0.00 3.16
3098 12214 0.459489 TGCTGGTTCAACTGGCAAAC 59.541 50.000 5.69 0.00 0.00 2.93
3099 12215 1.340889 GATGCTGGTTCAACTGGCAAA 59.659 47.619 10.87 0.00 36.49 3.68
3100 12216 0.961019 GATGCTGGTTCAACTGGCAA 59.039 50.000 10.87 0.00 36.49 4.52
3158 12274 7.272037 AGTACCAACACATCTAAACAAAAGG 57.728 36.000 0.00 0.00 0.00 3.11
3169 12285 5.048991 CCAAAGTACCAAGTACCAACACATC 60.049 44.000 1.36 0.00 39.58 3.06
3184 12300 6.801575 TGATTGTCTCAAAAACCAAAGTACC 58.198 36.000 0.00 0.00 0.00 3.34
3185 12301 8.134895 TGATGATTGTCTCAAAAACCAAAGTAC 58.865 33.333 0.00 0.00 37.44 2.73
3186 12302 8.231692 TGATGATTGTCTCAAAAACCAAAGTA 57.768 30.769 0.00 0.00 37.44 2.24
3187 12303 7.111247 TGATGATTGTCTCAAAAACCAAAGT 57.889 32.000 0.00 0.00 37.44 2.66
3188 12304 7.654520 ACATGATGATTGTCTCAAAAACCAAAG 59.345 33.333 0.00 0.00 37.44 2.77
3189 12305 7.438757 CACATGATGATTGTCTCAAAAACCAAA 59.561 33.333 0.00 0.00 37.44 3.28
3190 12306 6.924612 CACATGATGATTGTCTCAAAAACCAA 59.075 34.615 0.00 0.00 37.44 3.67
3206 12331 5.826208 AGCATTTGAATCTAGCACATGATGA 59.174 36.000 0.00 0.00 0.00 2.92
3220 12345 3.834231 ACAAGCCCTACAAGCATTTGAAT 59.166 39.130 0.00 0.00 37.73 2.57
3250 12375 3.039011 TCCCCCGGTGAAAATTTCAAAA 58.961 40.909 10.27 0.00 42.15 2.44
3251 12376 2.630580 CTCCCCCGGTGAAAATTTCAAA 59.369 45.455 10.27 0.00 42.15 2.69
3252 12377 2.243810 CTCCCCCGGTGAAAATTTCAA 58.756 47.619 10.27 0.00 42.15 2.69
3253 12378 1.549037 CCTCCCCCGGTGAAAATTTCA 60.549 52.381 4.03 4.03 37.33 2.69
3255 12380 0.781278 TCCTCCCCCGGTGAAAATTT 59.219 50.000 0.00 0.00 0.00 1.82
3256 12381 0.331616 CTCCTCCCCCGGTGAAAATT 59.668 55.000 0.00 0.00 0.00 1.82
3258 12383 2.228480 CCTCCTCCCCCGGTGAAAA 61.228 63.158 0.00 0.00 0.00 2.29
3259 12384 2.609610 CCTCCTCCCCCGGTGAAA 60.610 66.667 0.00 0.00 0.00 2.69
3260 12385 4.733725 CCCTCCTCCCCCGGTGAA 62.734 72.222 0.00 0.00 0.00 3.18
3280 12405 2.155197 ATTCAGGTGGTTGAGGGGGC 62.155 60.000 0.00 0.00 0.00 5.80
3281 12406 1.295020 TATTCAGGTGGTTGAGGGGG 58.705 55.000 0.00 0.00 0.00 5.40
3282 12407 5.316987 GAATATATTCAGGTGGTTGAGGGG 58.683 45.833 18.67 0.00 36.80 4.79
3283 12408 5.163099 TGGAATATATTCAGGTGGTTGAGGG 60.163 44.000 23.54 0.00 38.53 4.30
3284 12409 5.940617 TGGAATATATTCAGGTGGTTGAGG 58.059 41.667 23.54 0.00 38.53 3.86
3285 12410 7.226441 TGATGGAATATATTCAGGTGGTTGAG 58.774 38.462 23.54 0.00 38.53 3.02
3286 12411 7.147958 TGATGGAATATATTCAGGTGGTTGA 57.852 36.000 23.54 0.58 38.53 3.18
3287 12412 7.822161 TTGATGGAATATATTCAGGTGGTTG 57.178 36.000 23.54 0.00 38.53 3.77
3288 12413 9.438163 AATTTGATGGAATATATTCAGGTGGTT 57.562 29.630 23.54 9.50 38.53 3.67
3289 12414 9.438163 AAATTTGATGGAATATATTCAGGTGGT 57.562 29.630 23.54 5.74 38.53 4.16
3290 12415 9.701098 CAAATTTGATGGAATATATTCAGGTGG 57.299 33.333 23.54 2.72 38.53 4.61
3291 12416 9.199982 GCAAATTTGATGGAATATATTCAGGTG 57.800 33.333 22.31 10.69 38.53 4.00
3292 12417 8.370182 GGCAAATTTGATGGAATATATTCAGGT 58.630 33.333 22.31 10.90 38.53 4.00
3293 12418 8.591072 AGGCAAATTTGATGGAATATATTCAGG 58.409 33.333 22.31 4.89 38.53 3.86
3299 12424 8.796475 GCTTCTAGGCAAATTTGATGGAATATA 58.204 33.333 22.31 1.75 0.00 0.86
3300 12425 7.256083 GGCTTCTAGGCAAATTTGATGGAATAT 60.256 37.037 22.31 0.63 40.97 1.28
3301 12426 6.040842 GGCTTCTAGGCAAATTTGATGGAATA 59.959 38.462 22.31 2.68 40.97 1.75
3302 12427 5.163374 GGCTTCTAGGCAAATTTGATGGAAT 60.163 40.000 22.31 2.93 40.97 3.01
3303 12428 4.160252 GGCTTCTAGGCAAATTTGATGGAA 59.840 41.667 22.31 18.63 40.97 3.53
3304 12429 3.701040 GGCTTCTAGGCAAATTTGATGGA 59.299 43.478 22.31 13.04 40.97 3.41
3305 12430 3.703052 AGGCTTCTAGGCAAATTTGATGG 59.297 43.478 22.31 10.99 44.19 3.51
3306 12431 4.497006 CGAGGCTTCTAGGCAAATTTGATG 60.497 45.833 22.31 7.88 44.19 3.07
3307 12432 3.629398 CGAGGCTTCTAGGCAAATTTGAT 59.371 43.478 22.31 11.45 44.19 2.57
3308 12433 3.009723 CGAGGCTTCTAGGCAAATTTGA 58.990 45.455 22.31 0.00 44.19 2.69
3309 12434 2.478539 GCGAGGCTTCTAGGCAAATTTG 60.479 50.000 14.03 14.03 44.19 2.32
3310 12435 1.745653 GCGAGGCTTCTAGGCAAATTT 59.254 47.619 3.01 0.00 44.19 1.82
3311 12436 1.340017 TGCGAGGCTTCTAGGCAAATT 60.340 47.619 3.01 0.00 44.19 1.82
3312 12437 0.253044 TGCGAGGCTTCTAGGCAAAT 59.747 50.000 3.01 0.00 44.19 2.32
3313 12438 0.391661 CTGCGAGGCTTCTAGGCAAA 60.392 55.000 3.01 0.00 44.19 3.68
3314 12439 1.219124 CTGCGAGGCTTCTAGGCAA 59.781 57.895 3.01 0.00 44.19 4.52
3315 12440 2.895680 CTGCGAGGCTTCTAGGCA 59.104 61.111 3.01 0.00 44.19 4.75
3316 12441 2.587473 GCTGCGAGGCTTCTAGGC 60.587 66.667 0.00 0.00 41.73 3.93
3317 12442 1.067250 GAGCTGCGAGGCTTCTAGG 59.933 63.158 0.00 0.00 43.20 3.02
3318 12443 1.067250 GGAGCTGCGAGGCTTCTAG 59.933 63.158 0.00 0.00 43.20 2.43
3319 12444 1.045350 ATGGAGCTGCGAGGCTTCTA 61.045 55.000 0.00 0.94 43.20 2.10
3320 12445 1.045350 TATGGAGCTGCGAGGCTTCT 61.045 55.000 0.00 0.00 43.20 2.85
3321 12446 0.878086 GTATGGAGCTGCGAGGCTTC 60.878 60.000 0.00 3.06 43.20 3.86
3322 12447 1.144936 GTATGGAGCTGCGAGGCTT 59.855 57.895 0.00 0.00 43.20 4.35
3323 12448 2.025767 CTGTATGGAGCTGCGAGGCT 62.026 60.000 0.00 2.28 46.11 4.58
3324 12449 1.593750 CTGTATGGAGCTGCGAGGC 60.594 63.158 0.00 0.00 0.00 4.70
3325 12450 1.068753 CCTGTATGGAGCTGCGAGG 59.931 63.158 0.00 0.00 38.35 4.63
3326 12451 2.119009 TCCTGTATGGAGCTGCGAG 58.881 57.895 0.00 0.00 40.56 5.03
3327 12452 4.355151 TCCTGTATGGAGCTGCGA 57.645 55.556 0.00 0.00 40.56 5.10
3333 12458 8.112854 GTTCACTTGAACCTATCCTGTATGGAG 61.113 44.444 10.50 0.00 46.57 3.86
3334 12459 6.351881 GTTCACTTGAACCTATCCTGTATGGA 60.352 42.308 10.50 0.00 46.97 3.41
3335 12460 5.614324 TCACTTGAACCTATCCTGTATGG 57.386 43.478 0.00 0.00 37.10 2.74
3336 12461 6.910536 GTTCACTTGAACCTATCCTGTATG 57.089 41.667 10.50 0.00 46.42 2.39
3348 12473 6.016276 ATGGTTACATTCTGGTTCACTTGAAC 60.016 38.462 12.83 12.83 43.00 3.18
3349 12474 5.441500 TGGTTACATTCTGGTTCACTTGAA 58.558 37.500 0.00 0.00 0.00 2.69
3350 12475 5.042463 TGGTTACATTCTGGTTCACTTGA 57.958 39.130 0.00 0.00 0.00 3.02
3351 12476 5.473162 TGATGGTTACATTCTGGTTCACTTG 59.527 40.000 0.00 0.00 37.47 3.16
3352 12477 5.630121 TGATGGTTACATTCTGGTTCACTT 58.370 37.500 0.00 0.00 37.47 3.16
3353 12478 5.221925 ACTGATGGTTACATTCTGGTTCACT 60.222 40.000 0.00 0.00 37.47 3.41
3354 12479 5.003804 ACTGATGGTTACATTCTGGTTCAC 58.996 41.667 0.00 0.00 37.47 3.18
3355 12480 5.241403 ACTGATGGTTACATTCTGGTTCA 57.759 39.130 0.00 0.00 37.47 3.18
3356 12481 5.817816 CCTACTGATGGTTACATTCTGGTTC 59.182 44.000 0.00 0.00 37.47 3.62
3357 12482 5.487488 TCCTACTGATGGTTACATTCTGGTT 59.513 40.000 0.00 0.00 37.47 3.67
3358 12483 5.030147 TCCTACTGATGGTTACATTCTGGT 58.970 41.667 0.00 0.00 37.47 4.00
3359 12484 5.129485 ACTCCTACTGATGGTTACATTCTGG 59.871 44.000 0.00 0.00 37.47 3.86
3360 12485 6.227298 ACTCCTACTGATGGTTACATTCTG 57.773 41.667 0.00 0.00 37.47 3.02
3361 12486 6.039493 CGTACTCCTACTGATGGTTACATTCT 59.961 42.308 0.00 0.00 37.47 2.40
3394 12519 6.518493 AGATGCAAATTAAGTGGCCATATTG 58.482 36.000 9.72 9.51 0.00 1.90
3409 12534 9.401058 AGTACTCAAGCTAATTAAGATGCAAAT 57.599 29.630 0.00 0.00 0.00 2.32
3410 12535 8.792830 AGTACTCAAGCTAATTAAGATGCAAA 57.207 30.769 0.00 0.00 0.00 3.68
3411 12536 8.668353 CAAGTACTCAAGCTAATTAAGATGCAA 58.332 33.333 0.00 0.00 0.00 4.08
3413 12538 8.202745 ACAAGTACTCAAGCTAATTAAGATGC 57.797 34.615 0.00 0.00 0.00 3.91
3414 12539 9.593134 AGACAAGTACTCAAGCTAATTAAGATG 57.407 33.333 0.00 0.00 0.00 2.90
3415 12540 9.593134 CAGACAAGTACTCAAGCTAATTAAGAT 57.407 33.333 0.00 0.00 0.00 2.40
3416 12541 8.585881 ACAGACAAGTACTCAAGCTAATTAAGA 58.414 33.333 0.00 0.00 0.00 2.10
3417 12542 8.764524 ACAGACAAGTACTCAAGCTAATTAAG 57.235 34.615 0.00 0.00 0.00 1.85
3418 12543 8.988934 CAACAGACAAGTACTCAAGCTAATTAA 58.011 33.333 0.00 0.00 0.00 1.40
3419 12544 8.148351 ACAACAGACAAGTACTCAAGCTAATTA 58.852 33.333 0.00 0.00 0.00 1.40
3420 12545 6.992715 ACAACAGACAAGTACTCAAGCTAATT 59.007 34.615 0.00 0.00 0.00 1.40
3421 12546 6.425114 CACAACAGACAAGTACTCAAGCTAAT 59.575 38.462 0.00 0.00 0.00 1.73
3471 12598 5.711976 ACAATAAAAAGGACAGGATCACCAG 59.288 40.000 0.00 0.00 38.94 4.00
3473 12600 6.590234 AACAATAAAAAGGACAGGATCACC 57.410 37.500 0.00 0.00 0.00 4.02
3499 12626 2.158608 ACAAAAGGACTTGAGACCCAGG 60.159 50.000 0.00 0.00 0.00 4.45
3515 12642 6.700960 CACAATGGAAGAACAATGCTACAAAA 59.299 34.615 0.00 0.00 0.00 2.44
3519 12646 4.380867 CCCACAATGGAAGAACAATGCTAC 60.381 45.833 0.00 0.00 40.96 3.58
3530 12657 0.604578 CAACTGCCCCACAATGGAAG 59.395 55.000 0.00 0.00 40.96 3.46
3611 12738 8.780003 AGGGAGTATAATACAGGATACGTCTAT 58.220 37.037 0.00 0.00 46.39 1.98
3639 12766 3.766591 TCTCCAACAAGTTTTTCCAAGCA 59.233 39.130 0.00 0.00 0.00 3.91
3641 12768 7.548780 TCAATTTCTCCAACAAGTTTTTCCAAG 59.451 33.333 0.00 0.00 0.00 3.61
3706 12833 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
3710 12837 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
3718 12845 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3722 12849 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3738 12865 1.967779 GGCTACAGATCCTTCTCCCTC 59.032 57.143 0.00 0.00 0.00 4.30
3745 12872 1.630369 TGTGCAAGGCTACAGATCCTT 59.370 47.619 0.00 0.00 43.06 3.36
3748 12875 2.393271 ACTGTGCAAGGCTACAGATC 57.607 50.000 19.91 0.00 45.46 2.75
3777 12905 6.483640 AGTGTAATTGAAGTTTCAGGTGTCTC 59.516 38.462 0.00 0.00 38.61 3.36
3802 12930 6.213397 TCCTCCTGAGACATAAAATGACTTCA 59.787 38.462 0.00 0.00 35.50 3.02
3821 12950 4.731313 ACTTTGGTTTCTGAATCCTCCT 57.269 40.909 16.27 0.00 0.00 3.69
3867 12996 1.796796 GCACGGGCTCTTTTGCTAG 59.203 57.895 0.00 0.00 36.96 3.42
3868 12997 2.032634 CGCACGGGCTCTTTTGCTA 61.033 57.895 8.62 0.00 38.10 3.49
3869 12998 3.357079 CGCACGGGCTCTTTTGCT 61.357 61.111 8.62 0.00 38.10 3.91
3870 12999 3.194272 AACGCACGGGCTCTTTTGC 62.194 57.895 8.62 0.00 38.10 3.68
3871 13000 1.082104 GAACGCACGGGCTCTTTTG 60.082 57.895 8.62 0.00 38.10 2.44
3872 13001 1.098712 TTGAACGCACGGGCTCTTTT 61.099 50.000 8.62 0.00 38.10 2.27
3873 13002 1.525077 TTGAACGCACGGGCTCTTT 60.525 52.632 8.62 0.00 38.10 2.52
3874 13003 2.110213 TTGAACGCACGGGCTCTT 59.890 55.556 8.62 0.00 38.10 2.85
3875 13004 2.665185 GTTGAACGCACGGGCTCT 60.665 61.111 8.62 0.00 38.10 4.09
3876 13005 4.072088 CGTTGAACGCACGGGCTC 62.072 66.667 8.62 0.00 38.10 4.70
3880 13009 3.708734 GTCCCGTTGAACGCACGG 61.709 66.667 12.95 8.67 45.65 4.94
3881 13010 2.037913 TTTGTCCCGTTGAACGCACG 62.038 55.000 12.95 1.78 40.91 5.34
3882 13011 0.099082 TTTTGTCCCGTTGAACGCAC 59.901 50.000 12.95 11.25 40.91 5.34
3883 13012 0.809385 TTTTTGTCCCGTTGAACGCA 59.191 45.000 12.95 2.05 40.91 5.24
3884 13013 2.128367 ATTTTTGTCCCGTTGAACGC 57.872 45.000 12.95 0.00 40.91 4.84
3885 13014 6.604930 ACTATTATTTTTGTCCCGTTGAACG 58.395 36.000 11.30 11.30 42.11 3.95
3886 13015 8.294577 AGAACTATTATTTTTGTCCCGTTGAAC 58.705 33.333 0.00 0.00 0.00 3.18
3887 13016 8.293867 CAGAACTATTATTTTTGTCCCGTTGAA 58.706 33.333 0.00 0.00 0.00 2.69
3888 13017 7.446013 ACAGAACTATTATTTTTGTCCCGTTGA 59.554 33.333 0.00 0.00 0.00 3.18
3889 13018 7.590279 ACAGAACTATTATTTTTGTCCCGTTG 58.410 34.615 0.00 0.00 0.00 4.10
3890 13019 7.094506 GGACAGAACTATTATTTTTGTCCCGTT 60.095 37.037 18.42 0.00 44.50 4.44
3891 13020 6.373495 GGACAGAACTATTATTTTTGTCCCGT 59.627 38.462 18.42 0.00 44.50 5.28
3892 13021 6.782150 GGACAGAACTATTATTTTTGTCCCG 58.218 40.000 18.42 0.00 44.50 5.14
3901 13030 9.343539 GCTAGGAAAATGGACAGAACTATTATT 57.656 33.333 0.00 0.00 0.00 1.40
3902 13031 8.718656 AGCTAGGAAAATGGACAGAACTATTAT 58.281 33.333 0.00 0.00 0.00 1.28
3903 13032 8.090788 AGCTAGGAAAATGGACAGAACTATTA 57.909 34.615 0.00 0.00 0.00 0.98
3904 13033 6.963322 AGCTAGGAAAATGGACAGAACTATT 58.037 36.000 0.00 0.00 0.00 1.73
3905 13034 6.156949 TGAGCTAGGAAAATGGACAGAACTAT 59.843 38.462 0.00 0.00 0.00 2.12
3906 13035 5.483937 TGAGCTAGGAAAATGGACAGAACTA 59.516 40.000 0.00 0.00 0.00 2.24
3907 13036 4.287067 TGAGCTAGGAAAATGGACAGAACT 59.713 41.667 0.00 0.00 0.00 3.01
3908 13037 4.579869 TGAGCTAGGAAAATGGACAGAAC 58.420 43.478 0.00 0.00 0.00 3.01
3909 13038 4.908601 TGAGCTAGGAAAATGGACAGAA 57.091 40.909 0.00 0.00 0.00 3.02
3910 13039 4.908601 TTGAGCTAGGAAAATGGACAGA 57.091 40.909 0.00 0.00 0.00 3.41
3911 13040 7.284034 ACATTATTGAGCTAGGAAAATGGACAG 59.716 37.037 10.97 0.00 0.00 3.51
3912 13041 7.067372 CACATTATTGAGCTAGGAAAATGGACA 59.933 37.037 10.97 0.00 0.00 4.02
3913 13042 7.283127 TCACATTATTGAGCTAGGAAAATGGAC 59.717 37.037 10.97 0.00 0.00 4.02
3914 13043 7.345691 TCACATTATTGAGCTAGGAAAATGGA 58.654 34.615 10.97 5.17 0.00 3.41
3915 13044 7.572523 TCACATTATTGAGCTAGGAAAATGG 57.427 36.000 10.97 3.59 0.00 3.16
3944 13073 9.712359 GTTCGTTAGTAAACAAAGTCATTCTTT 57.288 29.630 0.00 0.00 45.96 2.52
3945 13074 8.885722 TGTTCGTTAGTAAACAAAGTCATTCTT 58.114 29.630 0.00 0.00 38.10 2.52
3946 13075 8.428186 TGTTCGTTAGTAAACAAAGTCATTCT 57.572 30.769 0.00 0.00 35.16 2.40
3947 13076 9.493206 TTTGTTCGTTAGTAAACAAAGTCATTC 57.507 29.630 8.80 0.00 45.48 2.67
3955 13084 9.622004 TCAACATTTTTGTTCGTTAGTAAACAA 57.378 25.926 0.00 0.00 42.07 2.83
3956 13085 9.622004 TTCAACATTTTTGTTCGTTAGTAAACA 57.378 25.926 0.00 0.00 35.16 2.83
3975 13104 9.022915 CGTGCATTTTCATACATTATTCAACAT 57.977 29.630 0.00 0.00 0.00 2.71
3976 13105 7.487509 CCGTGCATTTTCATACATTATTCAACA 59.512 33.333 0.00 0.00 0.00 3.33
3977 13106 7.700234 TCCGTGCATTTTCATACATTATTCAAC 59.300 33.333 0.00 0.00 0.00 3.18
3978 13107 7.766283 TCCGTGCATTTTCATACATTATTCAA 58.234 30.769 0.00 0.00 0.00 2.69
3979 13108 7.326968 TCCGTGCATTTTCATACATTATTCA 57.673 32.000 0.00 0.00 0.00 2.57
3980 13109 8.801715 ATTCCGTGCATTTTCATACATTATTC 57.198 30.769 0.00 0.00 0.00 1.75
3981 13110 9.248291 GAATTCCGTGCATTTTCATACATTATT 57.752 29.630 0.00 0.00 0.00 1.40
3982 13111 8.412456 TGAATTCCGTGCATTTTCATACATTAT 58.588 29.630 2.27 0.00 0.00 1.28
3983 13112 7.766283 TGAATTCCGTGCATTTTCATACATTA 58.234 30.769 2.27 0.00 0.00 1.90
3984 13113 6.629128 TGAATTCCGTGCATTTTCATACATT 58.371 32.000 2.27 0.00 0.00 2.71
3985 13114 6.206395 TGAATTCCGTGCATTTTCATACAT 57.794 33.333 2.27 0.00 0.00 2.29
3986 13115 5.635417 TGAATTCCGTGCATTTTCATACA 57.365 34.783 2.27 0.00 0.00 2.29
3987 13116 5.861251 TGTTGAATTCCGTGCATTTTCATAC 59.139 36.000 2.27 0.00 0.00 2.39
3988 13117 6.018589 TGTTGAATTCCGTGCATTTTCATA 57.981 33.333 2.27 0.00 0.00 2.15
3989 13118 4.880759 TGTTGAATTCCGTGCATTTTCAT 58.119 34.783 2.27 0.00 0.00 2.57
3990 13119 4.313277 TGTTGAATTCCGTGCATTTTCA 57.687 36.364 2.27 0.00 0.00 2.69
3991 13120 5.844301 AATGTTGAATTCCGTGCATTTTC 57.156 34.783 2.27 0.00 0.00 2.29
3992 13121 7.903995 ATTAATGTTGAATTCCGTGCATTTT 57.096 28.000 14.51 5.61 0.00 1.82
3993 13122 8.031864 TGTATTAATGTTGAATTCCGTGCATTT 58.968 29.630 14.51 5.61 0.00 2.32
3994 13123 7.542890 TGTATTAATGTTGAATTCCGTGCATT 58.457 30.769 2.27 10.14 0.00 3.56
3995 13124 7.094508 TGTATTAATGTTGAATTCCGTGCAT 57.905 32.000 2.27 0.00 0.00 3.96
3996 13125 6.502136 TGTATTAATGTTGAATTCCGTGCA 57.498 33.333 2.27 0.00 0.00 4.57
3997 13126 6.020678 GCTTGTATTAATGTTGAATTCCGTGC 60.021 38.462 2.27 0.00 0.00 5.34
3998 13127 7.026562 TGCTTGTATTAATGTTGAATTCCGTG 58.973 34.615 2.27 0.00 0.00 4.94
3999 13128 7.151999 TGCTTGTATTAATGTTGAATTCCGT 57.848 32.000 2.27 0.00 0.00 4.69
4000 13129 8.633075 AATGCTTGTATTAATGTTGAATTCCG 57.367 30.769 2.27 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.