Multiple sequence alignment - TraesCS5B01G339500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G339500 chr5B 100.000 2487 0 0 1 2487 523840614 523843100 0.000000e+00 4593
1 TraesCS5B01G339500 chr5B 97.297 407 11 0 1 407 682380185 682379779 0.000000e+00 691
2 TraesCS5B01G339500 chrUn 97.851 1861 38 2 407 2266 282364290 282362431 0.000000e+00 3214
3 TraesCS5B01G339500 chrUn 97.528 1861 44 2 407 2266 86509606 86507747 0.000000e+00 3181
4 TraesCS5B01G339500 chr6B 97.691 1862 39 3 407 2266 596620730 596622589 0.000000e+00 3197
5 TraesCS5B01G339500 chr6B 97.297 407 11 0 1 407 271090155 271089749 0.000000e+00 691
6 TraesCS5B01G339500 chr3B 97.528 1861 41 5 407 2266 92318244 92320100 0.000000e+00 3177
7 TraesCS5B01G339500 chr3B 97.543 407 10 0 1 407 660460652 660460246 0.000000e+00 697
8 TraesCS5B01G339500 chr3B 97.052 407 12 0 1 407 734821447 734821853 0.000000e+00 686
9 TraesCS5B01G339500 chr6A 97.371 1864 44 3 407 2266 84434550 84436412 0.000000e+00 3166
10 TraesCS5B01G339500 chr2B 97.312 1860 45 5 407 2266 30670205 30668351 0.000000e+00 3153
11 TraesCS5B01G339500 chr2B 97.297 407 11 0 1 407 776173158 776173564 0.000000e+00 691
12 TraesCS5B01G339500 chr3D 97.097 1860 51 3 407 2266 154704554 154702698 0.000000e+00 3133
13 TraesCS5B01G339500 chr4D 96.989 1860 50 3 407 2266 123424120 123425973 0.000000e+00 3120
14 TraesCS5B01G339500 chr6D 96.828 1860 55 4 407 2266 168767194 168769049 0.000000e+00 3105
15 TraesCS5B01G339500 chr1B 97.789 407 9 0 1 407 616698285 616697879 0.000000e+00 702
16 TraesCS5B01G339500 chr1B 97.052 407 12 0 1 407 307945263 307945669 0.000000e+00 686
17 TraesCS5B01G339500 chr1B 97.052 407 12 0 1 407 585429252 585429658 0.000000e+00 686
18 TraesCS5B01G339500 chr1B 99.561 228 1 0 2260 2487 575854337 575854110 1.380000e-112 416
19 TraesCS5B01G339500 chr1B 99.123 228 2 0 2260 2487 56819704 56819931 6.400000e-111 411
20 TraesCS5B01G339500 chr1B 99.123 228 2 0 2260 2487 154586544 154586771 6.400000e-111 411
21 TraesCS5B01G339500 chr1B 99.123 228 2 0 2260 2487 663805117 663805344 6.400000e-111 411
22 TraesCS5B01G339500 chr7B 97.052 407 12 0 1 407 27408703 27408297 0.000000e+00 686
23 TraesCS5B01G339500 chr7B 99.561 228 0 1 2260 2487 720983083 720982857 4.950000e-112 414
24 TraesCS5B01G339500 chr5D 99.123 228 2 0 2260 2487 84206199 84205972 6.400000e-111 411
25 TraesCS5B01G339500 chr4B 99.123 228 2 0 2260 2487 657227599 657227372 6.400000e-111 411
26 TraesCS5B01G339500 chr2D 99.123 228 2 0 2260 2487 331203350 331203577 6.400000e-111 411
27 TraesCS5B01G339500 chr2D 99.123 228 2 0 2260 2487 498465487 498465260 6.400000e-111 411


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G339500 chr5B 523840614 523843100 2486 False 4593 4593 100.000 1 2487 1 chr5B.!!$F1 2486
1 TraesCS5B01G339500 chrUn 282362431 282364290 1859 True 3214 3214 97.851 407 2266 1 chrUn.!!$R2 1859
2 TraesCS5B01G339500 chrUn 86507747 86509606 1859 True 3181 3181 97.528 407 2266 1 chrUn.!!$R1 1859
3 TraesCS5B01G339500 chr6B 596620730 596622589 1859 False 3197 3197 97.691 407 2266 1 chr6B.!!$F1 1859
4 TraesCS5B01G339500 chr3B 92318244 92320100 1856 False 3177 3177 97.528 407 2266 1 chr3B.!!$F1 1859
5 TraesCS5B01G339500 chr6A 84434550 84436412 1862 False 3166 3166 97.371 407 2266 1 chr6A.!!$F1 1859
6 TraesCS5B01G339500 chr2B 30668351 30670205 1854 True 3153 3153 97.312 407 2266 1 chr2B.!!$R1 1859
7 TraesCS5B01G339500 chr3D 154702698 154704554 1856 True 3133 3133 97.097 407 2266 1 chr3D.!!$R1 1859
8 TraesCS5B01G339500 chr4D 123424120 123425973 1853 False 3120 3120 96.989 407 2266 1 chr4D.!!$F1 1859
9 TraesCS5B01G339500 chr6D 168767194 168769049 1855 False 3105 3105 96.828 407 2266 1 chr6D.!!$F1 1859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.033109 AATAAGGCCTGGAACCTGCC 60.033 55.0 5.69 14.05 45.7 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1786 1.469126 GCTACATACGCACCGACACG 61.469 60.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.782047 CAGATTATGCAAAAACCAAGTCCA 58.218 37.500 0.00 0.00 0.00 4.02
30 31 5.865552 CAGATTATGCAAAAACCAAGTCCAG 59.134 40.000 0.00 0.00 0.00 3.86
31 32 2.531522 ATGCAAAAACCAAGTCCAGC 57.468 45.000 0.00 0.00 0.00 4.85
32 33 1.484038 TGCAAAAACCAAGTCCAGCT 58.516 45.000 0.00 0.00 0.00 4.24
33 34 1.408702 TGCAAAAACCAAGTCCAGCTC 59.591 47.619 0.00 0.00 0.00 4.09
34 35 1.683385 GCAAAAACCAAGTCCAGCTCT 59.317 47.619 0.00 0.00 0.00 4.09
35 36 2.287849 GCAAAAACCAAGTCCAGCTCTC 60.288 50.000 0.00 0.00 0.00 3.20
36 37 2.278332 AAAACCAAGTCCAGCTCTCC 57.722 50.000 0.00 0.00 0.00 3.71
37 38 1.439543 AAACCAAGTCCAGCTCTCCT 58.560 50.000 0.00 0.00 0.00 3.69
38 39 0.980423 AACCAAGTCCAGCTCTCCTC 59.020 55.000 0.00 0.00 0.00 3.71
39 40 0.178921 ACCAAGTCCAGCTCTCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
40 41 0.536260 CCAAGTCCAGCTCTCCTCAG 59.464 60.000 0.00 0.00 0.00 3.35
41 42 1.554836 CAAGTCCAGCTCTCCTCAGA 58.445 55.000 0.00 0.00 0.00 3.27
42 43 1.204467 CAAGTCCAGCTCTCCTCAGAC 59.796 57.143 0.00 0.00 0.00 3.51
43 44 0.704076 AGTCCAGCTCTCCTCAGACT 59.296 55.000 0.00 0.00 32.14 3.24
44 45 1.102978 GTCCAGCTCTCCTCAGACTC 58.897 60.000 0.00 0.00 0.00 3.36
45 46 0.998928 TCCAGCTCTCCTCAGACTCT 59.001 55.000 0.00 0.00 0.00 3.24
46 47 1.105457 CCAGCTCTCCTCAGACTCTG 58.895 60.000 0.00 0.00 0.00 3.35
47 48 1.616725 CCAGCTCTCCTCAGACTCTGT 60.617 57.143 5.94 0.00 32.61 3.41
48 49 1.745087 CAGCTCTCCTCAGACTCTGTC 59.255 57.143 5.94 0.00 32.61 3.51
49 50 1.635487 AGCTCTCCTCAGACTCTGTCT 59.365 52.381 5.94 0.00 44.44 3.41
50 51 2.017049 GCTCTCCTCAGACTCTGTCTC 58.983 57.143 5.94 0.00 41.37 3.36
51 52 2.643551 CTCTCCTCAGACTCTGTCTCC 58.356 57.143 5.94 0.00 41.37 3.71
52 53 1.988846 TCTCCTCAGACTCTGTCTCCA 59.011 52.381 5.94 0.00 41.37 3.86
53 54 2.026356 TCTCCTCAGACTCTGTCTCCAG 60.026 54.545 5.94 0.00 41.37 3.86
54 55 0.817013 CCTCAGACTCTGTCTCCAGC 59.183 60.000 5.94 0.00 41.37 4.85
55 56 1.543607 CTCAGACTCTGTCTCCAGCA 58.456 55.000 5.94 0.00 41.37 4.41
56 57 1.202114 CTCAGACTCTGTCTCCAGCAC 59.798 57.143 5.94 0.00 41.37 4.40
57 58 0.964700 CAGACTCTGTCTCCAGCACA 59.035 55.000 0.00 0.00 41.37 4.57
58 59 0.965439 AGACTCTGTCTCCAGCACAC 59.035 55.000 0.00 0.00 38.71 3.82
59 60 0.037790 GACTCTGTCTCCAGCACACC 60.038 60.000 0.00 0.00 38.66 4.16
60 61 1.080230 CTCTGTCTCCAGCACACCG 60.080 63.158 0.00 0.00 38.66 4.94
61 62 1.810606 CTCTGTCTCCAGCACACCGT 61.811 60.000 0.00 0.00 38.66 4.83
62 63 0.538746 TCTGTCTCCAGCACACCGTA 60.539 55.000 0.00 0.00 38.66 4.02
63 64 0.109086 CTGTCTCCAGCACACCGTAG 60.109 60.000 0.00 0.00 0.00 3.51
85 86 5.897377 GGCAACTGGAAATACAATACTGT 57.103 39.130 0.00 0.00 39.75 3.55
86 87 6.995511 GGCAACTGGAAATACAATACTGTA 57.004 37.500 0.00 0.00 42.22 2.74
88 89 7.417612 GGCAACTGGAAATACAATACTGTATG 58.582 38.462 0.00 0.00 46.08 2.39
89 90 6.912591 GCAACTGGAAATACAATACTGTATGC 59.087 38.462 0.00 0.00 46.08 3.14
90 91 7.415095 GCAACTGGAAATACAATACTGTATGCA 60.415 37.037 0.00 0.00 46.08 3.96
91 92 8.623903 CAACTGGAAATACAATACTGTATGCAT 58.376 33.333 3.79 3.79 46.08 3.96
92 93 8.383318 ACTGGAAATACAATACTGTATGCATC 57.617 34.615 0.19 0.00 46.08 3.91
93 94 7.992608 ACTGGAAATACAATACTGTATGCATCA 59.007 33.333 0.19 0.10 46.08 3.07
94 95 8.744568 TGGAAATACAATACTGTATGCATCAA 57.255 30.769 0.19 0.00 46.08 2.57
95 96 8.620416 TGGAAATACAATACTGTATGCATCAAC 58.380 33.333 0.19 0.00 46.08 3.18
96 97 8.840321 GGAAATACAATACTGTATGCATCAACT 58.160 33.333 0.19 0.00 46.08 3.16
97 98 9.655769 GAAATACAATACTGTATGCATCAACTG 57.344 33.333 0.19 3.53 46.08 3.16
98 99 5.490139 ACAATACTGTATGCATCAACTGC 57.510 39.130 0.19 0.00 42.17 4.40
117 118 2.417719 GCACAAGCAGCTACTAACTGT 58.582 47.619 0.00 0.00 41.58 3.55
118 119 2.413453 GCACAAGCAGCTACTAACTGTC 59.587 50.000 0.00 0.00 41.58 3.51
119 120 2.996621 CACAAGCAGCTACTAACTGTCC 59.003 50.000 0.00 0.00 37.47 4.02
120 121 2.900546 ACAAGCAGCTACTAACTGTCCT 59.099 45.455 0.00 0.00 37.47 3.85
121 122 3.325135 ACAAGCAGCTACTAACTGTCCTT 59.675 43.478 0.00 0.00 37.47 3.36
122 123 4.202367 ACAAGCAGCTACTAACTGTCCTTT 60.202 41.667 0.00 0.00 37.47 3.11
123 124 5.011738 ACAAGCAGCTACTAACTGTCCTTTA 59.988 40.000 0.00 0.00 37.47 1.85
124 125 5.740290 AGCAGCTACTAACTGTCCTTTAA 57.260 39.130 0.00 0.00 37.47 1.52
125 126 6.110411 AGCAGCTACTAACTGTCCTTTAAA 57.890 37.500 0.00 0.00 37.47 1.52
126 127 5.932883 AGCAGCTACTAACTGTCCTTTAAAC 59.067 40.000 0.00 0.00 37.47 2.01
127 128 5.121925 GCAGCTACTAACTGTCCTTTAAACC 59.878 44.000 0.00 0.00 37.47 3.27
128 129 6.465084 CAGCTACTAACTGTCCTTTAAACCT 58.535 40.000 0.00 0.00 0.00 3.50
129 130 6.590677 CAGCTACTAACTGTCCTTTAAACCTC 59.409 42.308 0.00 0.00 0.00 3.85
130 131 5.873712 GCTACTAACTGTCCTTTAAACCTCC 59.126 44.000 0.00 0.00 0.00 4.30
131 132 5.238624 ACTAACTGTCCTTTAAACCTCCC 57.761 43.478 0.00 0.00 0.00 4.30
132 133 4.912133 ACTAACTGTCCTTTAAACCTCCCT 59.088 41.667 0.00 0.00 0.00 4.20
133 134 3.790089 ACTGTCCTTTAAACCTCCCTG 57.210 47.619 0.00 0.00 0.00 4.45
134 135 3.053826 ACTGTCCTTTAAACCTCCCTGT 58.946 45.455 0.00 0.00 0.00 4.00
135 136 3.181443 ACTGTCCTTTAAACCTCCCTGTG 60.181 47.826 0.00 0.00 0.00 3.66
136 137 3.050089 TGTCCTTTAAACCTCCCTGTGA 58.950 45.455 0.00 0.00 0.00 3.58
137 138 3.072476 TGTCCTTTAAACCTCCCTGTGAG 59.928 47.826 0.00 0.00 41.07 3.51
138 139 3.326880 GTCCTTTAAACCTCCCTGTGAGA 59.673 47.826 0.00 0.00 44.42 3.27
139 140 3.977999 TCCTTTAAACCTCCCTGTGAGAA 59.022 43.478 0.00 0.00 44.42 2.87
140 141 4.414182 TCCTTTAAACCTCCCTGTGAGAAA 59.586 41.667 0.00 0.00 44.42 2.52
141 142 5.103855 TCCTTTAAACCTCCCTGTGAGAAAA 60.104 40.000 0.00 0.00 44.42 2.29
142 143 5.241728 CCTTTAAACCTCCCTGTGAGAAAAG 59.758 44.000 0.00 0.00 44.42 2.27
143 144 3.953542 AAACCTCCCTGTGAGAAAAGT 57.046 42.857 0.00 0.00 44.42 2.66
144 145 2.938956 ACCTCCCTGTGAGAAAAGTG 57.061 50.000 0.00 0.00 44.42 3.16
145 146 1.421646 ACCTCCCTGTGAGAAAAGTGG 59.578 52.381 0.00 0.00 44.42 4.00
146 147 1.528129 CTCCCTGTGAGAAAAGTGGC 58.472 55.000 0.00 0.00 44.42 5.01
147 148 0.843309 TCCCTGTGAGAAAAGTGGCA 59.157 50.000 0.00 0.00 0.00 4.92
148 149 1.425066 TCCCTGTGAGAAAAGTGGCAT 59.575 47.619 0.00 0.00 0.00 4.40
149 150 1.815003 CCCTGTGAGAAAAGTGGCATC 59.185 52.381 0.00 0.00 0.00 3.91
150 151 2.507484 CCTGTGAGAAAAGTGGCATCA 58.493 47.619 0.00 0.00 0.00 3.07
151 152 2.886523 CCTGTGAGAAAAGTGGCATCAA 59.113 45.455 0.00 0.00 0.00 2.57
152 153 3.508793 CCTGTGAGAAAAGTGGCATCAAT 59.491 43.478 0.00 0.00 0.00 2.57
153 154 4.701651 CCTGTGAGAAAAGTGGCATCAATA 59.298 41.667 0.00 0.00 0.00 1.90
154 155 5.163683 CCTGTGAGAAAAGTGGCATCAATAG 60.164 44.000 0.00 0.00 0.00 1.73
155 156 4.156556 TGTGAGAAAAGTGGCATCAATAGC 59.843 41.667 0.00 0.00 0.00 2.97
174 175 2.532250 CCAAATAAGGCCTGGAACCT 57.468 50.000 5.69 0.00 40.02 3.50
175 176 2.102578 CCAAATAAGGCCTGGAACCTG 58.897 52.381 5.69 0.00 37.67 4.00
176 177 1.478105 CAAATAAGGCCTGGAACCTGC 59.522 52.381 5.69 0.00 37.67 4.85
177 178 0.033109 AATAAGGCCTGGAACCTGCC 60.033 55.000 5.69 14.05 45.70 4.85
180 181 2.203625 GGCCTGGAACCTGCCAAA 60.204 61.111 16.02 0.00 44.70 3.28
181 182 1.836604 GGCCTGGAACCTGCCAAAA 60.837 57.895 16.02 0.00 44.70 2.44
182 183 1.406860 GGCCTGGAACCTGCCAAAAA 61.407 55.000 16.02 0.00 44.70 1.94
198 199 0.462375 AAAAACCCCAACGACAAGCC 59.538 50.000 0.00 0.00 0.00 4.35
199 200 0.396556 AAAACCCCAACGACAAGCCT 60.397 50.000 0.00 0.00 0.00 4.58
200 201 0.822121 AAACCCCAACGACAAGCCTC 60.822 55.000 0.00 0.00 0.00 4.70
201 202 1.990160 AACCCCAACGACAAGCCTCA 61.990 55.000 0.00 0.00 0.00 3.86
202 203 1.228124 CCCCAACGACAAGCCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
203 204 0.821711 CCCCAACGACAAGCCTCAAA 60.822 55.000 0.00 0.00 0.00 2.69
204 205 0.593128 CCCAACGACAAGCCTCAAAG 59.407 55.000 0.00 0.00 0.00 2.77
205 206 0.040067 CCAACGACAAGCCTCAAAGC 60.040 55.000 0.00 0.00 0.00 3.51
206 207 0.662619 CAACGACAAGCCTCAAAGCA 59.337 50.000 0.00 0.00 34.23 3.91
207 208 0.947244 AACGACAAGCCTCAAAGCAG 59.053 50.000 0.00 0.00 34.23 4.24
208 209 0.106708 ACGACAAGCCTCAAAGCAGA 59.893 50.000 0.00 0.00 34.23 4.26
209 210 0.514691 CGACAAGCCTCAAAGCAGAC 59.485 55.000 0.00 0.00 34.23 3.51
210 211 1.597742 GACAAGCCTCAAAGCAGACA 58.402 50.000 0.00 0.00 34.23 3.41
211 212 1.949525 GACAAGCCTCAAAGCAGACAA 59.050 47.619 0.00 0.00 34.23 3.18
212 213 2.358898 GACAAGCCTCAAAGCAGACAAA 59.641 45.455 0.00 0.00 34.23 2.83
213 214 2.760092 ACAAGCCTCAAAGCAGACAAAA 59.240 40.909 0.00 0.00 34.23 2.44
214 215 3.195396 ACAAGCCTCAAAGCAGACAAAAA 59.805 39.130 0.00 0.00 34.23 1.94
215 216 3.443099 AGCCTCAAAGCAGACAAAAAC 57.557 42.857 0.00 0.00 34.23 2.43
216 217 2.101415 AGCCTCAAAGCAGACAAAAACC 59.899 45.455 0.00 0.00 34.23 3.27
217 218 2.803133 GCCTCAAAGCAGACAAAAACCC 60.803 50.000 0.00 0.00 0.00 4.11
218 219 2.695147 CCTCAAAGCAGACAAAAACCCT 59.305 45.455 0.00 0.00 0.00 4.34
219 220 3.243535 CCTCAAAGCAGACAAAAACCCTC 60.244 47.826 0.00 0.00 0.00 4.30
220 221 2.693074 TCAAAGCAGACAAAAACCCTCC 59.307 45.455 0.00 0.00 0.00 4.30
221 222 2.695147 CAAAGCAGACAAAAACCCTCCT 59.305 45.455 0.00 0.00 0.00 3.69
222 223 3.876309 AAGCAGACAAAAACCCTCCTA 57.124 42.857 0.00 0.00 0.00 2.94
223 224 3.876309 AGCAGACAAAAACCCTCCTAA 57.124 42.857 0.00 0.00 0.00 2.69
224 225 4.178956 AGCAGACAAAAACCCTCCTAAA 57.821 40.909 0.00 0.00 0.00 1.85
225 226 4.145052 AGCAGACAAAAACCCTCCTAAAG 58.855 43.478 0.00 0.00 0.00 1.85
226 227 3.305403 GCAGACAAAAACCCTCCTAAAGC 60.305 47.826 0.00 0.00 0.00 3.51
227 228 3.888930 CAGACAAAAACCCTCCTAAAGCA 59.111 43.478 0.00 0.00 0.00 3.91
228 229 4.524328 CAGACAAAAACCCTCCTAAAGCAT 59.476 41.667 0.00 0.00 0.00 3.79
229 230 5.011023 CAGACAAAAACCCTCCTAAAGCATT 59.989 40.000 0.00 0.00 0.00 3.56
230 231 5.243954 AGACAAAAACCCTCCTAAAGCATTC 59.756 40.000 0.00 0.00 0.00 2.67
231 232 4.283467 ACAAAAACCCTCCTAAAGCATTCC 59.717 41.667 0.00 0.00 0.00 3.01
232 233 4.404185 AAAACCCTCCTAAAGCATTCCT 57.596 40.909 0.00 0.00 0.00 3.36
233 234 4.404185 AAACCCTCCTAAAGCATTCCTT 57.596 40.909 0.00 0.00 34.51 3.36
234 235 3.372440 ACCCTCCTAAAGCATTCCTTG 57.628 47.619 0.00 0.00 33.01 3.61
235 236 2.024941 ACCCTCCTAAAGCATTCCTTGG 60.025 50.000 0.00 0.00 33.01 3.61
236 237 2.242196 CCCTCCTAAAGCATTCCTTGGA 59.758 50.000 0.00 0.00 33.01 3.53
237 238 3.282885 CCTCCTAAAGCATTCCTTGGAC 58.717 50.000 0.00 0.00 33.01 4.02
238 239 3.054065 CCTCCTAAAGCATTCCTTGGACT 60.054 47.826 0.00 0.00 33.01 3.85
239 240 4.568592 CCTCCTAAAGCATTCCTTGGACTT 60.569 45.833 0.00 0.00 33.01 3.01
240 241 4.998051 TCCTAAAGCATTCCTTGGACTTT 58.002 39.130 8.24 8.24 33.01 2.66
241 242 4.766891 TCCTAAAGCATTCCTTGGACTTTG 59.233 41.667 11.59 2.90 33.01 2.77
242 243 4.524328 CCTAAAGCATTCCTTGGACTTTGT 59.476 41.667 11.59 0.00 33.01 2.83
243 244 4.590850 AAAGCATTCCTTGGACTTTGTC 57.409 40.909 3.83 0.00 33.01 3.18
244 245 3.228188 AGCATTCCTTGGACTTTGTCA 57.772 42.857 0.07 0.00 33.68 3.58
245 246 2.887152 AGCATTCCTTGGACTTTGTCAC 59.113 45.455 0.07 0.00 33.68 3.67
246 247 2.887152 GCATTCCTTGGACTTTGTCACT 59.113 45.455 0.07 0.00 33.68 3.41
247 248 3.057946 GCATTCCTTGGACTTTGTCACTC 60.058 47.826 0.07 0.00 33.68 3.51
248 249 2.930826 TCCTTGGACTTTGTCACTCC 57.069 50.000 0.07 0.00 33.68 3.85
249 250 1.420138 TCCTTGGACTTTGTCACTCCC 59.580 52.381 0.07 0.00 33.68 4.30
250 251 1.545651 CCTTGGACTTTGTCACTCCCC 60.546 57.143 0.07 0.00 33.68 4.81
251 252 1.421646 CTTGGACTTTGTCACTCCCCT 59.578 52.381 0.07 0.00 33.68 4.79
252 253 0.764890 TGGACTTTGTCACTCCCCTG 59.235 55.000 0.07 0.00 33.68 4.45
253 254 1.056660 GGACTTTGTCACTCCCCTGA 58.943 55.000 0.07 0.00 33.68 3.86
254 255 1.420138 GGACTTTGTCACTCCCCTGAA 59.580 52.381 0.07 0.00 33.68 3.02
255 256 2.040412 GGACTTTGTCACTCCCCTGAAT 59.960 50.000 0.07 0.00 33.68 2.57
256 257 3.077359 GACTTTGTCACTCCCCTGAATG 58.923 50.000 0.00 0.00 32.09 2.67
257 258 2.443255 ACTTTGTCACTCCCCTGAATGT 59.557 45.455 0.00 0.00 0.00 2.71
258 259 2.566833 TTGTCACTCCCCTGAATGTG 57.433 50.000 0.00 0.00 0.00 3.21
259 260 1.434188 TGTCACTCCCCTGAATGTGT 58.566 50.000 0.00 0.00 0.00 3.72
260 261 2.615391 TGTCACTCCCCTGAATGTGTA 58.385 47.619 0.00 0.00 0.00 2.90
261 262 2.301870 TGTCACTCCCCTGAATGTGTAC 59.698 50.000 0.00 0.00 0.00 2.90
262 263 2.567615 GTCACTCCCCTGAATGTGTACT 59.432 50.000 0.00 0.00 0.00 2.73
263 264 2.832129 TCACTCCCCTGAATGTGTACTC 59.168 50.000 0.00 0.00 0.00 2.59
264 265 2.093447 CACTCCCCTGAATGTGTACTCC 60.093 54.545 0.00 0.00 0.00 3.85
265 266 2.187958 CTCCCCTGAATGTGTACTCCA 58.812 52.381 0.00 0.00 0.00 3.86
266 267 1.906574 TCCCCTGAATGTGTACTCCAC 59.093 52.381 0.00 0.00 44.78 4.02
285 286 3.797039 CACGGTGTGGTGATCAATATCT 58.203 45.455 0.00 0.00 40.38 1.98
286 287 4.944048 CACGGTGTGGTGATCAATATCTA 58.056 43.478 0.00 0.00 40.38 1.98
287 288 4.745125 CACGGTGTGGTGATCAATATCTAC 59.255 45.833 0.00 0.00 40.38 2.59
288 289 4.404394 ACGGTGTGGTGATCAATATCTACA 59.596 41.667 0.00 0.00 32.93 2.74
289 290 5.105106 ACGGTGTGGTGATCAATATCTACAA 60.105 40.000 0.00 0.00 32.93 2.41
290 291 5.991606 CGGTGTGGTGATCAATATCTACAAT 59.008 40.000 0.00 0.00 32.93 2.71
291 292 7.151976 CGGTGTGGTGATCAATATCTACAATA 58.848 38.462 0.00 0.00 32.93 1.90
292 293 7.116376 CGGTGTGGTGATCAATATCTACAATAC 59.884 40.741 0.00 0.00 32.93 1.89
293 294 8.150945 GGTGTGGTGATCAATATCTACAATACT 58.849 37.037 0.00 0.00 32.93 2.12
296 297 9.640963 GTGGTGATCAATATCTACAATACTACC 57.359 37.037 0.00 0.00 32.93 3.18
297 298 9.601810 TGGTGATCAATATCTACAATACTACCT 57.398 33.333 0.00 0.00 32.93 3.08
302 303 9.998752 ATCAATATCTACAATACTACCTAGGCT 57.001 33.333 9.30 0.00 0.00 4.58
303 304 9.824216 TCAATATCTACAATACTACCTAGGCTT 57.176 33.333 9.30 0.00 0.00 4.35
304 305 9.862371 CAATATCTACAATACTACCTAGGCTTG 57.138 37.037 9.30 7.76 0.00 4.01
305 306 9.603189 AATATCTACAATACTACCTAGGCTTGT 57.397 33.333 9.30 12.92 36.59 3.16
306 307 6.956202 TCTACAATACTACCTAGGCTTGTC 57.044 41.667 9.30 0.00 35.30 3.18
307 308 5.832060 TCTACAATACTACCTAGGCTTGTCC 59.168 44.000 9.30 0.00 35.30 4.02
309 310 4.650131 ACAATACTACCTAGGCTTGTCCTC 59.350 45.833 9.30 0.00 43.20 3.71
310 311 4.817874 ATACTACCTAGGCTTGTCCTCT 57.182 45.455 9.30 0.00 43.20 3.69
311 312 3.021177 ACTACCTAGGCTTGTCCTCTC 57.979 52.381 9.30 0.00 43.20 3.20
312 313 2.312390 CTACCTAGGCTTGTCCTCTCC 58.688 57.143 9.30 0.00 43.20 3.71
313 314 0.413832 ACCTAGGCTTGTCCTCTCCA 59.586 55.000 9.30 0.00 43.20 3.86
314 315 0.827368 CCTAGGCTTGTCCTCTCCAC 59.173 60.000 0.00 0.00 43.20 4.02
315 316 1.621072 CCTAGGCTTGTCCTCTCCACT 60.621 57.143 0.00 0.00 43.20 4.00
316 317 2.183679 CTAGGCTTGTCCTCTCCACTT 58.816 52.381 0.00 0.00 43.20 3.16
317 318 0.980423 AGGCTTGTCCTCTCCACTTC 59.020 55.000 0.00 0.00 43.20 3.01
318 319 0.687354 GGCTTGTCCTCTCCACTTCA 59.313 55.000 0.00 0.00 0.00 3.02
319 320 1.609320 GGCTTGTCCTCTCCACTTCAC 60.609 57.143 0.00 0.00 0.00 3.18
320 321 1.609320 GCTTGTCCTCTCCACTTCACC 60.609 57.143 0.00 0.00 0.00 4.02
321 322 1.974236 CTTGTCCTCTCCACTTCACCT 59.026 52.381 0.00 0.00 0.00 4.00
322 323 2.103153 TGTCCTCTCCACTTCACCTT 57.897 50.000 0.00 0.00 0.00 3.50
323 324 2.408565 TGTCCTCTCCACTTCACCTTT 58.591 47.619 0.00 0.00 0.00 3.11
324 325 2.104792 TGTCCTCTCCACTTCACCTTTG 59.895 50.000 0.00 0.00 0.00 2.77
325 326 2.368875 GTCCTCTCCACTTCACCTTTGA 59.631 50.000 0.00 0.00 0.00 2.69
326 327 3.045634 TCCTCTCCACTTCACCTTTGAA 58.954 45.455 0.00 0.00 39.55 2.69
327 328 3.652869 TCCTCTCCACTTCACCTTTGAAT 59.347 43.478 0.00 0.00 41.05 2.57
328 329 3.755378 CCTCTCCACTTCACCTTTGAATG 59.245 47.826 0.00 0.00 41.05 2.67
329 330 4.505566 CCTCTCCACTTCACCTTTGAATGA 60.506 45.833 0.00 0.00 41.05 2.57
330 331 5.047566 TCTCCACTTCACCTTTGAATGAA 57.952 39.130 0.00 0.00 41.05 2.57
331 332 5.634118 TCTCCACTTCACCTTTGAATGAAT 58.366 37.500 0.00 0.00 41.05 2.57
332 333 6.778821 TCTCCACTTCACCTTTGAATGAATA 58.221 36.000 0.00 0.00 41.05 1.75
333 334 6.655003 TCTCCACTTCACCTTTGAATGAATAC 59.345 38.462 0.00 0.00 41.05 1.89
334 335 6.303054 TCCACTTCACCTTTGAATGAATACA 58.697 36.000 0.00 0.00 41.05 2.29
335 336 6.775142 TCCACTTCACCTTTGAATGAATACAA 59.225 34.615 0.00 0.00 41.05 2.41
336 337 6.863126 CCACTTCACCTTTGAATGAATACAAC 59.137 38.462 0.00 0.00 41.05 3.32
337 338 7.424803 CACTTCACCTTTGAATGAATACAACA 58.575 34.615 0.00 0.00 41.05 3.33
338 339 7.920151 CACTTCACCTTTGAATGAATACAACAA 59.080 33.333 0.00 0.00 41.05 2.83
339 340 8.641541 ACTTCACCTTTGAATGAATACAACAAT 58.358 29.630 0.00 0.00 41.05 2.71
340 341 9.480053 CTTCACCTTTGAATGAATACAACAATT 57.520 29.630 0.00 0.00 41.05 2.32
355 356 6.918892 ACAACAATTAAAAACTTTCCTGCC 57.081 33.333 0.00 0.00 0.00 4.85
356 357 6.410540 ACAACAATTAAAAACTTTCCTGCCA 58.589 32.000 0.00 0.00 0.00 4.92
357 358 6.538381 ACAACAATTAAAAACTTTCCTGCCAG 59.462 34.615 0.00 0.00 0.00 4.85
358 359 6.233905 ACAATTAAAAACTTTCCTGCCAGT 57.766 33.333 0.00 0.00 0.00 4.00
359 360 6.649155 ACAATTAAAAACTTTCCTGCCAGTT 58.351 32.000 0.00 0.00 34.58 3.16
360 361 7.787028 ACAATTAAAAACTTTCCTGCCAGTTA 58.213 30.769 0.00 0.00 32.74 2.24
361 362 7.709182 ACAATTAAAAACTTTCCTGCCAGTTAC 59.291 33.333 0.00 0.00 32.74 2.50
362 363 4.665833 AAAAACTTTCCTGCCAGTTACC 57.334 40.909 0.00 0.00 32.74 2.85
363 364 3.306472 AAACTTTCCTGCCAGTTACCA 57.694 42.857 0.00 0.00 32.74 3.25
364 365 3.525800 AACTTTCCTGCCAGTTACCAT 57.474 42.857 0.00 0.00 31.20 3.55
365 366 4.650972 AACTTTCCTGCCAGTTACCATA 57.349 40.909 0.00 0.00 31.20 2.74
366 367 3.951663 ACTTTCCTGCCAGTTACCATAC 58.048 45.455 0.00 0.00 0.00 2.39
367 368 3.329520 ACTTTCCTGCCAGTTACCATACA 59.670 43.478 0.00 0.00 0.00 2.29
368 369 4.018415 ACTTTCCTGCCAGTTACCATACAT 60.018 41.667 0.00 0.00 0.00 2.29
369 370 5.190925 ACTTTCCTGCCAGTTACCATACATA 59.809 40.000 0.00 0.00 0.00 2.29
370 371 4.955811 TCCTGCCAGTTACCATACATAG 57.044 45.455 0.00 0.00 0.00 2.23
371 372 4.552674 TCCTGCCAGTTACCATACATAGA 58.447 43.478 0.00 0.00 0.00 1.98
372 373 4.966168 TCCTGCCAGTTACCATACATAGAA 59.034 41.667 0.00 0.00 0.00 2.10
373 374 5.606749 TCCTGCCAGTTACCATACATAGAAT 59.393 40.000 0.00 0.00 0.00 2.40
374 375 5.934625 CCTGCCAGTTACCATACATAGAATC 59.065 44.000 0.00 0.00 0.00 2.52
375 376 5.865085 TGCCAGTTACCATACATAGAATCC 58.135 41.667 0.00 0.00 0.00 3.01
376 377 5.368230 TGCCAGTTACCATACATAGAATCCA 59.632 40.000 0.00 0.00 0.00 3.41
377 378 6.044287 TGCCAGTTACCATACATAGAATCCAT 59.956 38.462 0.00 0.00 0.00 3.41
378 379 7.236640 TGCCAGTTACCATACATAGAATCCATA 59.763 37.037 0.00 0.00 0.00 2.74
379 380 7.766278 GCCAGTTACCATACATAGAATCCATAG 59.234 40.741 0.00 0.00 0.00 2.23
380 381 7.766278 CCAGTTACCATACATAGAATCCATAGC 59.234 40.741 0.00 0.00 0.00 2.97
381 382 7.766278 CAGTTACCATACATAGAATCCATAGCC 59.234 40.741 0.00 0.00 0.00 3.93
382 383 7.680310 AGTTACCATACATAGAATCCATAGCCT 59.320 37.037 0.00 0.00 0.00 4.58
383 384 6.305272 ACCATACATAGAATCCATAGCCTG 57.695 41.667 0.00 0.00 0.00 4.85
384 385 5.787494 ACCATACATAGAATCCATAGCCTGT 59.213 40.000 0.00 0.00 0.00 4.00
385 386 6.273260 ACCATACATAGAATCCATAGCCTGTT 59.727 38.462 0.00 0.00 0.00 3.16
386 387 6.596888 CCATACATAGAATCCATAGCCTGTTG 59.403 42.308 0.00 0.00 0.00 3.33
387 388 5.636903 ACATAGAATCCATAGCCTGTTGT 57.363 39.130 0.00 0.00 0.00 3.32
388 389 6.006275 ACATAGAATCCATAGCCTGTTGTT 57.994 37.500 0.00 0.00 0.00 2.83
389 390 6.426587 ACATAGAATCCATAGCCTGTTGTTT 58.573 36.000 0.00 0.00 0.00 2.83
390 391 7.573710 ACATAGAATCCATAGCCTGTTGTTTA 58.426 34.615 0.00 0.00 0.00 2.01
391 392 8.220559 ACATAGAATCCATAGCCTGTTGTTTAT 58.779 33.333 0.00 0.00 0.00 1.40
392 393 8.725148 CATAGAATCCATAGCCTGTTGTTTATC 58.275 37.037 0.00 0.00 0.00 1.75
393 394 6.662755 AGAATCCATAGCCTGTTGTTTATCA 58.337 36.000 0.00 0.00 0.00 2.15
394 395 7.293073 AGAATCCATAGCCTGTTGTTTATCAT 58.707 34.615 0.00 0.00 0.00 2.45
395 396 7.781693 AGAATCCATAGCCTGTTGTTTATCATT 59.218 33.333 0.00 0.00 0.00 2.57
396 397 6.698008 TCCATAGCCTGTTGTTTATCATTG 57.302 37.500 0.00 0.00 0.00 2.82
397 398 6.422333 TCCATAGCCTGTTGTTTATCATTGA 58.578 36.000 0.00 0.00 0.00 2.57
398 399 6.889177 TCCATAGCCTGTTGTTTATCATTGAA 59.111 34.615 0.00 0.00 0.00 2.69
399 400 6.974622 CCATAGCCTGTTGTTTATCATTGAAC 59.025 38.462 0.00 0.00 0.00 3.18
400 401 7.362834 CCATAGCCTGTTGTTTATCATTGAACA 60.363 37.037 0.00 0.00 34.22 3.18
401 402 6.403866 AGCCTGTTGTTTATCATTGAACAA 57.596 33.333 0.00 0.00 41.84 2.83
606 607 1.407618 TGGAGACATCGTGGATTACCG 59.592 52.381 0.00 0.00 35.12 4.02
607 608 1.407979 GGAGACATCGTGGATTACCGT 59.592 52.381 0.00 0.00 39.42 4.83
610 611 4.288531 GAGACATCGTGGATTACCGTAAG 58.711 47.826 0.00 0.00 39.42 2.34
1048 1049 2.430694 CCTGATGTAGTGGGATCGTTCA 59.569 50.000 0.00 0.00 0.00 3.18
1180 1181 4.329545 GTCTGGTCGCTTGGGCCA 62.330 66.667 0.00 0.00 34.44 5.36
1332 1333 2.976589 TCGGTCGCCTATGATATACGA 58.023 47.619 0.00 0.00 0.00 3.43
1456 1458 1.213430 TCAAGGGGTCGGTCACTTTTT 59.787 47.619 0.00 0.00 0.00 1.94
1521 1523 4.597404 TCTCTTCGCAGCTCATATCAAT 57.403 40.909 0.00 0.00 0.00 2.57
1625 1629 2.233186 GCTACTAAGGACCTGACGGTTT 59.767 50.000 0.00 0.00 45.73 3.27
1782 1786 3.305744 CGAAGAGGCTTAGGGATAAGAGC 60.306 52.174 0.00 0.00 0.00 4.09
2021 2025 6.822442 TGTCATTGTCAGTCAACTAAGGTTA 58.178 36.000 0.00 0.00 38.97 2.85
2163 2167 1.550976 GAACCTCTCCTTGTGATCGGT 59.449 52.381 0.00 0.00 0.00 4.69
2186 2190 2.072487 GGTAGATGCCTCCCAGCCA 61.072 63.158 0.00 0.00 0.00 4.75
2188 2192 1.050988 GTAGATGCCTCCCAGCCAGA 61.051 60.000 0.00 0.00 0.00 3.86
2262 2269 2.143876 AAACTTCTGTGCTTGGTGGT 57.856 45.000 0.00 0.00 0.00 4.16
2266 2273 3.832527 ACTTCTGTGCTTGGTGGTAAAT 58.167 40.909 0.00 0.00 0.00 1.40
2267 2274 3.821033 ACTTCTGTGCTTGGTGGTAAATC 59.179 43.478 0.00 0.00 0.00 2.17
2268 2275 3.788227 TCTGTGCTTGGTGGTAAATCT 57.212 42.857 0.00 0.00 0.00 2.40
2269 2276 4.901197 TCTGTGCTTGGTGGTAAATCTA 57.099 40.909 0.00 0.00 0.00 1.98
2270 2277 5.435686 TCTGTGCTTGGTGGTAAATCTAT 57.564 39.130 0.00 0.00 0.00 1.98
2271 2278 5.428253 TCTGTGCTTGGTGGTAAATCTATC 58.572 41.667 0.00 0.00 0.00 2.08
2272 2279 5.189736 TCTGTGCTTGGTGGTAAATCTATCT 59.810 40.000 0.00 0.00 0.00 1.98
2273 2280 5.815581 TGTGCTTGGTGGTAAATCTATCTT 58.184 37.500 0.00 0.00 0.00 2.40
2274 2281 5.647658 TGTGCTTGGTGGTAAATCTATCTTG 59.352 40.000 0.00 0.00 0.00 3.02
2275 2282 5.880332 GTGCTTGGTGGTAAATCTATCTTGA 59.120 40.000 0.00 0.00 0.00 3.02
2276 2283 6.374333 GTGCTTGGTGGTAAATCTATCTTGAA 59.626 38.462 0.00 0.00 0.00 2.69
2277 2284 7.067494 GTGCTTGGTGGTAAATCTATCTTGAAT 59.933 37.037 0.00 0.00 0.00 2.57
2278 2285 7.615365 TGCTTGGTGGTAAATCTATCTTGAATT 59.385 33.333 0.00 0.00 0.00 2.17
2279 2286 8.470002 GCTTGGTGGTAAATCTATCTTGAATTT 58.530 33.333 0.00 0.00 0.00 1.82
2298 2305 9.630098 TTGAATTTATCTTTGATGTTCTTCTGC 57.370 29.630 0.00 0.00 0.00 4.26
2299 2306 8.795513 TGAATTTATCTTTGATGTTCTTCTGCA 58.204 29.630 0.00 0.00 0.00 4.41
2300 2307 9.630098 GAATTTATCTTTGATGTTCTTCTGCAA 57.370 29.630 0.00 0.00 0.00 4.08
2303 2310 9.630098 TTTATCTTTGATGTTCTTCTGCAATTC 57.370 29.630 0.00 0.00 0.00 2.17
2304 2311 6.017400 TCTTTGATGTTCTTCTGCAATTCC 57.983 37.500 0.00 0.00 0.00 3.01
2305 2312 5.771666 TCTTTGATGTTCTTCTGCAATTCCT 59.228 36.000 0.00 0.00 0.00 3.36
2306 2313 6.266103 TCTTTGATGTTCTTCTGCAATTCCTT 59.734 34.615 0.00 0.00 0.00 3.36
2307 2314 6.409524 TTGATGTTCTTCTGCAATTCCTTT 57.590 33.333 0.00 0.00 0.00 3.11
2308 2315 5.775686 TGATGTTCTTCTGCAATTCCTTTG 58.224 37.500 0.00 0.00 38.43 2.77
2309 2316 4.589216 TGTTCTTCTGCAATTCCTTTGG 57.411 40.909 0.00 0.00 35.75 3.28
2310 2317 4.214310 TGTTCTTCTGCAATTCCTTTGGA 58.786 39.130 0.00 0.00 35.75 3.53
2311 2318 4.037923 TGTTCTTCTGCAATTCCTTTGGAC 59.962 41.667 0.00 0.00 35.75 4.02
2312 2319 3.157087 TCTTCTGCAATTCCTTTGGACC 58.843 45.455 0.00 0.00 35.75 4.46
2313 2320 1.923356 TCTGCAATTCCTTTGGACCC 58.077 50.000 0.00 0.00 35.75 4.46
2314 2321 1.146774 TCTGCAATTCCTTTGGACCCA 59.853 47.619 0.00 0.00 35.75 4.51
2315 2322 1.273327 CTGCAATTCCTTTGGACCCAC 59.727 52.381 0.00 0.00 35.75 4.61
2316 2323 1.133199 TGCAATTCCTTTGGACCCACT 60.133 47.619 0.00 0.00 35.75 4.00
2317 2324 1.970640 GCAATTCCTTTGGACCCACTT 59.029 47.619 0.00 0.00 35.75 3.16
2318 2325 2.289010 GCAATTCCTTTGGACCCACTTG 60.289 50.000 0.00 0.00 35.75 3.16
2319 2326 1.632589 ATTCCTTTGGACCCACTTGC 58.367 50.000 0.00 0.00 0.00 4.01
2320 2327 0.555769 TTCCTTTGGACCCACTTGCT 59.444 50.000 0.00 0.00 0.00 3.91
2321 2328 0.178992 TCCTTTGGACCCACTTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
2322 2329 1.181098 CCTTTGGACCCACTTGCTGG 61.181 60.000 0.00 0.00 40.26 4.85
2323 2330 0.468029 CTTTGGACCCACTTGCTGGT 60.468 55.000 0.00 0.00 38.60 4.00
2324 2331 0.032615 TTTGGACCCACTTGCTGGTT 60.033 50.000 0.00 0.00 38.60 3.67
2325 2332 0.032615 TTGGACCCACTTGCTGGTTT 60.033 50.000 0.00 0.00 38.60 3.27
2326 2333 0.032615 TGGACCCACTTGCTGGTTTT 60.033 50.000 0.00 0.00 38.60 2.43
2327 2334 0.673985 GGACCCACTTGCTGGTTTTC 59.326 55.000 0.00 0.00 38.60 2.29
2328 2335 1.692411 GACCCACTTGCTGGTTTTCT 58.308 50.000 0.00 0.00 38.60 2.52
2329 2336 2.031870 GACCCACTTGCTGGTTTTCTT 58.968 47.619 0.00 0.00 38.60 2.52
2330 2337 2.430694 GACCCACTTGCTGGTTTTCTTT 59.569 45.455 0.00 0.00 38.60 2.52
2331 2338 2.430694 ACCCACTTGCTGGTTTTCTTTC 59.569 45.455 0.00 0.00 38.60 2.62
2332 2339 2.430332 CCCACTTGCTGGTTTTCTTTCA 59.570 45.455 0.00 0.00 38.60 2.69
2333 2340 3.447742 CCACTTGCTGGTTTTCTTTCAC 58.552 45.455 0.00 0.00 34.90 3.18
2334 2341 3.447742 CACTTGCTGGTTTTCTTTCACC 58.552 45.455 0.00 0.00 0.00 4.02
2335 2342 2.430694 ACTTGCTGGTTTTCTTTCACCC 59.569 45.455 0.00 0.00 31.24 4.61
2336 2343 2.151502 TGCTGGTTTTCTTTCACCCA 57.848 45.000 0.00 0.00 31.24 4.51
2337 2344 1.754226 TGCTGGTTTTCTTTCACCCAC 59.246 47.619 0.00 0.00 31.24 4.61
2338 2345 2.031870 GCTGGTTTTCTTTCACCCACT 58.968 47.619 0.00 0.00 31.24 4.00
2339 2346 2.430694 GCTGGTTTTCTTTCACCCACTT 59.569 45.455 0.00 0.00 31.24 3.16
2340 2347 3.490933 GCTGGTTTTCTTTCACCCACTTC 60.491 47.826 0.00 0.00 31.24 3.01
2341 2348 3.954258 CTGGTTTTCTTTCACCCACTTCT 59.046 43.478 0.00 0.00 31.24 2.85
2342 2349 4.349365 TGGTTTTCTTTCACCCACTTCTT 58.651 39.130 0.00 0.00 31.24 2.52
2343 2350 4.775253 TGGTTTTCTTTCACCCACTTCTTT 59.225 37.500 0.00 0.00 31.24 2.52
2344 2351 5.952947 TGGTTTTCTTTCACCCACTTCTTTA 59.047 36.000 0.00 0.00 31.24 1.85
2345 2352 6.127563 TGGTTTTCTTTCACCCACTTCTTTAC 60.128 38.462 0.00 0.00 31.24 2.01
2346 2353 6.096423 GGTTTTCTTTCACCCACTTCTTTACT 59.904 38.462 0.00 0.00 0.00 2.24
2347 2354 7.363530 GGTTTTCTTTCACCCACTTCTTTACTT 60.364 37.037 0.00 0.00 0.00 2.24
2348 2355 6.937436 TTCTTTCACCCACTTCTTTACTTC 57.063 37.500 0.00 0.00 0.00 3.01
2349 2356 6.248569 TCTTTCACCCACTTCTTTACTTCT 57.751 37.500 0.00 0.00 0.00 2.85
2350 2357 6.659824 TCTTTCACCCACTTCTTTACTTCTT 58.340 36.000 0.00 0.00 0.00 2.52
2351 2358 6.766467 TCTTTCACCCACTTCTTTACTTCTTC 59.234 38.462 0.00 0.00 0.00 2.87
2352 2359 5.888982 TCACCCACTTCTTTACTTCTTCT 57.111 39.130 0.00 0.00 0.00 2.85
2353 2360 5.611374 TCACCCACTTCTTTACTTCTTCTG 58.389 41.667 0.00 0.00 0.00 3.02
2354 2361 4.214332 CACCCACTTCTTTACTTCTTCTGC 59.786 45.833 0.00 0.00 0.00 4.26
2355 2362 3.753797 CCCACTTCTTTACTTCTTCTGCC 59.246 47.826 0.00 0.00 0.00 4.85
2356 2363 4.389374 CCACTTCTTTACTTCTTCTGCCA 58.611 43.478 0.00 0.00 0.00 4.92
2357 2364 4.214332 CCACTTCTTTACTTCTTCTGCCAC 59.786 45.833 0.00 0.00 0.00 5.01
2358 2365 4.214332 CACTTCTTTACTTCTTCTGCCACC 59.786 45.833 0.00 0.00 0.00 4.61
2359 2366 3.418684 TCTTTACTTCTTCTGCCACCC 57.581 47.619 0.00 0.00 0.00 4.61
2360 2367 2.708861 TCTTTACTTCTTCTGCCACCCA 59.291 45.455 0.00 0.00 0.00 4.51
2361 2368 3.330701 TCTTTACTTCTTCTGCCACCCAT 59.669 43.478 0.00 0.00 0.00 4.00
2362 2369 3.350219 TTACTTCTTCTGCCACCCATC 57.650 47.619 0.00 0.00 0.00 3.51
2363 2370 1.366319 ACTTCTTCTGCCACCCATCT 58.634 50.000 0.00 0.00 0.00 2.90
2364 2371 1.707427 ACTTCTTCTGCCACCCATCTT 59.293 47.619 0.00 0.00 0.00 2.40
2365 2372 2.089980 CTTCTTCTGCCACCCATCTTG 58.910 52.381 0.00 0.00 0.00 3.02
2366 2373 1.361204 TCTTCTGCCACCCATCTTGA 58.639 50.000 0.00 0.00 0.00 3.02
2367 2374 1.003580 TCTTCTGCCACCCATCTTGAC 59.996 52.381 0.00 0.00 0.00 3.18
2368 2375 1.004044 CTTCTGCCACCCATCTTGACT 59.996 52.381 0.00 0.00 0.00 3.41
2369 2376 1.067295 TCTGCCACCCATCTTGACTT 58.933 50.000 0.00 0.00 0.00 3.01
2370 2377 1.171308 CTGCCACCCATCTTGACTTG 58.829 55.000 0.00 0.00 0.00 3.16
2371 2378 0.251297 TGCCACCCATCTTGACTTGG 60.251 55.000 0.00 0.00 0.00 3.61
2372 2379 1.598701 GCCACCCATCTTGACTTGGC 61.599 60.000 0.00 0.00 42.57 4.52
2373 2380 0.038744 CCACCCATCTTGACTTGGCT 59.961 55.000 0.00 0.00 0.00 4.75
2374 2381 1.457346 CACCCATCTTGACTTGGCTC 58.543 55.000 0.00 0.00 0.00 4.70
2375 2382 1.004044 CACCCATCTTGACTTGGCTCT 59.996 52.381 0.00 0.00 0.00 4.09
2376 2383 2.237143 CACCCATCTTGACTTGGCTCTA 59.763 50.000 0.00 0.00 0.00 2.43
2377 2384 2.237392 ACCCATCTTGACTTGGCTCTAC 59.763 50.000 0.00 0.00 0.00 2.59
2378 2385 2.503356 CCCATCTTGACTTGGCTCTACT 59.497 50.000 0.00 0.00 0.00 2.57
2379 2386 3.529533 CCATCTTGACTTGGCTCTACTG 58.470 50.000 0.00 0.00 0.00 2.74
2380 2387 3.196469 CCATCTTGACTTGGCTCTACTGA 59.804 47.826 0.00 0.00 0.00 3.41
2381 2388 4.141756 CCATCTTGACTTGGCTCTACTGAT 60.142 45.833 0.00 0.00 0.00 2.90
2382 2389 5.426504 CATCTTGACTTGGCTCTACTGATT 58.573 41.667 0.00 0.00 0.00 2.57
2383 2390 4.825422 TCTTGACTTGGCTCTACTGATTG 58.175 43.478 0.00 0.00 0.00 2.67
2384 2391 4.284490 TCTTGACTTGGCTCTACTGATTGT 59.716 41.667 0.00 0.00 0.00 2.71
2385 2392 5.480422 TCTTGACTTGGCTCTACTGATTGTA 59.520 40.000 0.00 0.00 0.00 2.41
2386 2393 5.939764 TGACTTGGCTCTACTGATTGTAT 57.060 39.130 0.00 0.00 0.00 2.29
2387 2394 5.907207 TGACTTGGCTCTACTGATTGTATC 58.093 41.667 0.00 0.00 0.00 2.24
2388 2395 5.163405 TGACTTGGCTCTACTGATTGTATCC 60.163 44.000 0.00 0.00 0.00 2.59
2389 2396 4.965532 ACTTGGCTCTACTGATTGTATCCT 59.034 41.667 0.00 0.00 0.00 3.24
2390 2397 5.426833 ACTTGGCTCTACTGATTGTATCCTT 59.573 40.000 0.00 0.00 0.00 3.36
2391 2398 5.537300 TGGCTCTACTGATTGTATCCTTC 57.463 43.478 0.00 0.00 0.00 3.46
2392 2399 4.345257 TGGCTCTACTGATTGTATCCTTCC 59.655 45.833 0.00 0.00 0.00 3.46
2393 2400 4.591072 GGCTCTACTGATTGTATCCTTCCT 59.409 45.833 0.00 0.00 0.00 3.36
2394 2401 5.775701 GGCTCTACTGATTGTATCCTTCCTA 59.224 44.000 0.00 0.00 0.00 2.94
2395 2402 6.267928 GGCTCTACTGATTGTATCCTTCCTAA 59.732 42.308 0.00 0.00 0.00 2.69
2396 2403 7.375053 GCTCTACTGATTGTATCCTTCCTAAG 58.625 42.308 0.00 0.00 0.00 2.18
2409 2416 5.297569 CCTTCCTAAGGGTTGATTCCTAG 57.702 47.826 0.00 0.00 45.27 3.02
2410 2417 4.445019 CCTTCCTAAGGGTTGATTCCTAGC 60.445 50.000 0.00 0.00 45.27 3.42
2411 2418 3.731431 TCCTAAGGGTTGATTCCTAGCA 58.269 45.455 0.00 0.00 33.58 3.49
2412 2419 4.307259 TCCTAAGGGTTGATTCCTAGCAT 58.693 43.478 0.00 0.00 33.58 3.79
2413 2420 4.103153 TCCTAAGGGTTGATTCCTAGCATG 59.897 45.833 0.00 0.00 33.58 4.06
2414 2421 4.141390 CCTAAGGGTTGATTCCTAGCATGT 60.141 45.833 0.00 0.00 33.58 3.21
2415 2422 3.287867 AGGGTTGATTCCTAGCATGTG 57.712 47.619 0.00 0.00 31.86 3.21
2416 2423 2.578021 AGGGTTGATTCCTAGCATGTGT 59.422 45.455 0.00 0.00 31.86 3.72
2417 2424 2.684881 GGGTTGATTCCTAGCATGTGTG 59.315 50.000 0.00 0.00 0.00 3.82
2431 2438 4.582701 CATGTGTGCTTAAAAGGGTTCA 57.417 40.909 0.00 0.00 0.00 3.18
2432 2439 4.298332 CATGTGTGCTTAAAAGGGTTCAC 58.702 43.478 0.00 0.00 0.00 3.18
2433 2440 3.626930 TGTGTGCTTAAAAGGGTTCACT 58.373 40.909 0.00 0.00 0.00 3.41
2434 2441 4.020543 TGTGTGCTTAAAAGGGTTCACTT 58.979 39.130 0.00 0.00 0.00 3.16
2435 2442 4.464597 TGTGTGCTTAAAAGGGTTCACTTT 59.535 37.500 0.00 0.00 42.17 2.66
2436 2443 4.803613 GTGTGCTTAAAAGGGTTCACTTTG 59.196 41.667 0.63 0.00 40.36 2.77
2437 2444 4.707448 TGTGCTTAAAAGGGTTCACTTTGA 59.293 37.500 0.63 0.00 40.36 2.69
2438 2445 5.041287 GTGCTTAAAAGGGTTCACTTTGAC 58.959 41.667 0.63 0.00 40.36 3.18
2439 2446 4.098807 TGCTTAAAAGGGTTCACTTTGACC 59.901 41.667 0.63 0.00 40.36 4.02
2440 2447 4.341235 GCTTAAAAGGGTTCACTTTGACCT 59.659 41.667 0.63 0.00 40.36 3.85
2441 2448 5.736207 GCTTAAAAGGGTTCACTTTGACCTG 60.736 44.000 0.63 0.00 40.36 4.00
2442 2449 3.662759 AAAGGGTTCACTTTGACCTGA 57.337 42.857 0.00 0.00 39.11 3.86
2443 2450 3.662759 AAGGGTTCACTTTGACCTGAA 57.337 42.857 0.00 0.00 0.00 3.02
2444 2451 2.932261 AGGGTTCACTTTGACCTGAAC 58.068 47.619 2.53 2.53 43.75 3.18
2445 2452 2.241176 AGGGTTCACTTTGACCTGAACA 59.759 45.455 11.52 0.00 45.48 3.18
2446 2453 3.117512 AGGGTTCACTTTGACCTGAACAT 60.118 43.478 11.52 0.00 45.48 2.71
2447 2454 3.636764 GGGTTCACTTTGACCTGAACATT 59.363 43.478 11.52 0.00 45.48 2.71
2448 2455 4.825085 GGGTTCACTTTGACCTGAACATTA 59.175 41.667 11.52 0.00 45.48 1.90
2449 2456 5.048713 GGGTTCACTTTGACCTGAACATTAG 60.049 44.000 11.52 0.00 45.48 1.73
2450 2457 5.531287 GGTTCACTTTGACCTGAACATTAGT 59.469 40.000 11.52 0.00 45.48 2.24
2451 2458 6.430451 GTTCACTTTGACCTGAACATTAGTG 58.570 40.000 5.80 0.00 43.86 2.74
2452 2459 4.515191 TCACTTTGACCTGAACATTAGTGC 59.485 41.667 0.00 0.00 33.96 4.40
2453 2460 4.516698 CACTTTGACCTGAACATTAGTGCT 59.483 41.667 0.00 0.00 0.00 4.40
2454 2461 5.700832 CACTTTGACCTGAACATTAGTGCTA 59.299 40.000 0.00 0.00 0.00 3.49
2455 2462 6.372659 CACTTTGACCTGAACATTAGTGCTAT 59.627 38.462 0.00 0.00 0.00 2.97
2456 2463 6.942576 ACTTTGACCTGAACATTAGTGCTATT 59.057 34.615 0.00 0.00 0.00 1.73
2457 2464 7.448469 ACTTTGACCTGAACATTAGTGCTATTT 59.552 33.333 0.00 0.00 0.00 1.40
2458 2465 6.985188 TGACCTGAACATTAGTGCTATTTC 57.015 37.500 0.00 0.00 0.00 2.17
2459 2466 5.580691 TGACCTGAACATTAGTGCTATTTCG 59.419 40.000 0.00 0.00 0.00 3.46
2460 2467 4.332819 ACCTGAACATTAGTGCTATTTCGC 59.667 41.667 0.00 0.00 0.00 4.70
2461 2468 4.332543 CCTGAACATTAGTGCTATTTCGCA 59.667 41.667 0.00 0.00 37.62 5.10
2462 2469 5.008019 CCTGAACATTAGTGCTATTTCGCAT 59.992 40.000 0.00 0.00 42.62 4.73
2463 2470 6.435430 TGAACATTAGTGCTATTTCGCATT 57.565 33.333 0.00 0.00 42.62 3.56
2464 2471 6.851609 TGAACATTAGTGCTATTTCGCATTT 58.148 32.000 0.00 0.00 42.62 2.32
2465 2472 7.312154 TGAACATTAGTGCTATTTCGCATTTT 58.688 30.769 0.00 0.00 42.62 1.82
2466 2473 8.454894 TGAACATTAGTGCTATTTCGCATTTTA 58.545 29.630 0.00 0.00 42.62 1.52
2467 2474 8.841444 AACATTAGTGCTATTTCGCATTTTAG 57.159 30.769 0.00 0.00 42.62 1.85
2468 2475 8.208718 ACATTAGTGCTATTTCGCATTTTAGA 57.791 30.769 0.00 0.00 42.62 2.10
2469 2476 8.840321 ACATTAGTGCTATTTCGCATTTTAGAT 58.160 29.630 0.00 0.00 42.62 1.98
2470 2477 9.110617 CATTAGTGCTATTTCGCATTTTAGATG 57.889 33.333 0.00 0.00 42.62 2.90
2471 2478 5.514279 AGTGCTATTTCGCATTTTAGATGC 58.486 37.500 0.00 0.00 42.62 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.782047 TGGACTTGGTTTTTGCATAATCTG 58.218 37.500 0.00 0.00 0.00 2.90
7 8 5.567423 GCTGGACTTGGTTTTTGCATAATCT 60.567 40.000 0.00 0.00 0.00 2.40
8 9 4.627035 GCTGGACTTGGTTTTTGCATAATC 59.373 41.667 0.00 0.00 0.00 1.75
9 10 4.284234 AGCTGGACTTGGTTTTTGCATAAT 59.716 37.500 0.00 0.00 0.00 1.28
10 11 3.640967 AGCTGGACTTGGTTTTTGCATAA 59.359 39.130 0.00 0.00 0.00 1.90
11 12 3.230134 AGCTGGACTTGGTTTTTGCATA 58.770 40.909 0.00 0.00 0.00 3.14
12 13 2.036346 GAGCTGGACTTGGTTTTTGCAT 59.964 45.455 0.00 0.00 0.00 3.96
13 14 1.408702 GAGCTGGACTTGGTTTTTGCA 59.591 47.619 0.00 0.00 0.00 4.08
14 15 1.683385 AGAGCTGGACTTGGTTTTTGC 59.317 47.619 0.00 0.00 0.00 3.68
15 16 2.294512 GGAGAGCTGGACTTGGTTTTTG 59.705 50.000 0.00 0.00 0.00 2.44
16 17 2.175715 AGGAGAGCTGGACTTGGTTTTT 59.824 45.455 0.00 0.00 0.00 1.94
17 18 1.777272 AGGAGAGCTGGACTTGGTTTT 59.223 47.619 0.00 0.00 0.00 2.43
18 19 1.349357 GAGGAGAGCTGGACTTGGTTT 59.651 52.381 0.00 0.00 0.00 3.27
19 20 0.980423 GAGGAGAGCTGGACTTGGTT 59.020 55.000 0.00 0.00 0.00 3.67
20 21 0.178921 TGAGGAGAGCTGGACTTGGT 60.179 55.000 0.00 0.00 0.00 3.67
21 22 0.536260 CTGAGGAGAGCTGGACTTGG 59.464 60.000 0.00 0.00 0.00 3.61
22 23 1.204467 GTCTGAGGAGAGCTGGACTTG 59.796 57.143 0.00 0.00 0.00 3.16
23 24 1.077005 AGTCTGAGGAGAGCTGGACTT 59.923 52.381 0.00 0.00 31.14 3.01
24 25 0.704076 AGTCTGAGGAGAGCTGGACT 59.296 55.000 0.00 0.00 0.00 3.85
25 26 1.102978 GAGTCTGAGGAGAGCTGGAC 58.897 60.000 0.00 0.00 0.00 4.02
26 27 0.998928 AGAGTCTGAGGAGAGCTGGA 59.001 55.000 0.00 0.00 0.00 3.86
27 28 1.105457 CAGAGTCTGAGGAGAGCTGG 58.895 60.000 15.46 0.00 32.10 4.85
28 29 1.745087 GACAGAGTCTGAGGAGAGCTG 59.255 57.143 26.86 0.00 37.63 4.24
29 30 1.635487 AGACAGAGTCTGAGGAGAGCT 59.365 52.381 26.86 0.83 41.76 4.09
30 31 2.017049 GAGACAGAGTCTGAGGAGAGC 58.983 57.143 26.86 6.56 43.53 4.09
31 32 2.026356 TGGAGACAGAGTCTGAGGAGAG 60.026 54.545 26.86 0.00 43.53 3.20
32 33 1.988846 TGGAGACAGAGTCTGAGGAGA 59.011 52.381 26.86 4.63 43.53 3.71
33 34 2.505650 TGGAGACAGAGTCTGAGGAG 57.494 55.000 26.86 0.00 43.53 3.69
45 46 1.532604 CCTACGGTGTGCTGGAGACA 61.533 60.000 0.00 0.00 33.66 3.41
46 47 1.215647 CCTACGGTGTGCTGGAGAC 59.784 63.158 0.00 0.00 33.66 3.36
47 48 2.646175 GCCTACGGTGTGCTGGAGA 61.646 63.158 0.00 0.00 33.66 3.71
48 49 2.125512 GCCTACGGTGTGCTGGAG 60.126 66.667 0.00 0.00 0.00 3.86
49 50 2.512355 TTGCCTACGGTGTGCTGGA 61.512 57.895 5.51 0.00 0.00 3.86
50 51 2.031919 TTGCCTACGGTGTGCTGG 59.968 61.111 5.51 0.00 0.00 4.85
51 52 1.301716 AGTTGCCTACGGTGTGCTG 60.302 57.895 5.51 0.00 0.00 4.41
52 53 1.301716 CAGTTGCCTACGGTGTGCT 60.302 57.895 5.51 0.00 0.00 4.40
53 54 2.325082 CCAGTTGCCTACGGTGTGC 61.325 63.158 0.00 0.00 0.00 4.57
54 55 0.250124 TTCCAGTTGCCTACGGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
55 56 0.470766 TTTCCAGTTGCCTACGGTGT 59.529 50.000 0.00 0.00 0.00 4.16
56 57 1.821216 ATTTCCAGTTGCCTACGGTG 58.179 50.000 0.00 0.00 0.00 4.94
57 58 2.303600 TGTATTTCCAGTTGCCTACGGT 59.696 45.455 0.00 0.00 0.00 4.83
58 59 2.980568 TGTATTTCCAGTTGCCTACGG 58.019 47.619 0.00 0.00 0.00 4.02
59 60 5.815740 AGTATTGTATTTCCAGTTGCCTACG 59.184 40.000 0.00 0.00 0.00 3.51
60 61 6.598064 ACAGTATTGTATTTCCAGTTGCCTAC 59.402 38.462 0.00 0.00 35.25 3.18
61 62 6.717289 ACAGTATTGTATTTCCAGTTGCCTA 58.283 36.000 0.00 0.00 35.25 3.93
62 63 5.570320 ACAGTATTGTATTTCCAGTTGCCT 58.430 37.500 0.00 0.00 35.25 4.75
63 64 5.897377 ACAGTATTGTATTTCCAGTTGCC 57.103 39.130 0.00 0.00 35.25 4.52
64 65 6.912591 GCATACAGTATTGTATTTCCAGTTGC 59.087 38.462 8.08 4.72 45.92 4.17
65 66 7.984391 TGCATACAGTATTGTATTTCCAGTTG 58.016 34.615 8.08 0.00 45.92 3.16
66 67 8.752005 ATGCATACAGTATTGTATTTCCAGTT 57.248 30.769 8.08 0.00 45.92 3.16
67 68 7.992608 TGATGCATACAGTATTGTATTTCCAGT 59.007 33.333 8.08 0.00 45.92 4.00
68 69 8.382030 TGATGCATACAGTATTGTATTTCCAG 57.618 34.615 8.08 0.00 45.92 3.86
69 70 8.620416 GTTGATGCATACAGTATTGTATTTCCA 58.380 33.333 8.08 6.82 45.92 3.53
70 71 8.840321 AGTTGATGCATACAGTATTGTATTTCC 58.160 33.333 8.08 1.95 45.92 3.13
71 72 9.655769 CAGTTGATGCATACAGTATTGTATTTC 57.344 33.333 8.08 6.88 45.92 2.17
97 98 2.413453 GACAGTTAGTAGCTGCTTGTGC 59.587 50.000 10.41 0.03 37.47 4.57
98 99 2.996621 GGACAGTTAGTAGCTGCTTGTG 59.003 50.000 10.41 7.84 37.47 3.33
99 100 2.900546 AGGACAGTTAGTAGCTGCTTGT 59.099 45.455 10.41 8.59 37.47 3.16
100 101 3.601443 AGGACAGTTAGTAGCTGCTTG 57.399 47.619 10.41 4.95 37.47 4.01
101 102 4.625607 AAAGGACAGTTAGTAGCTGCTT 57.374 40.909 10.41 7.34 37.47 3.91
102 103 5.740290 TTAAAGGACAGTTAGTAGCTGCT 57.260 39.130 13.40 9.94 37.47 4.24
103 104 5.121925 GGTTTAAAGGACAGTTAGTAGCTGC 59.878 44.000 13.40 0.00 37.47 5.25
104 105 6.465084 AGGTTTAAAGGACAGTTAGTAGCTG 58.535 40.000 12.05 12.05 39.67 4.24
105 106 6.295745 GGAGGTTTAAAGGACAGTTAGTAGCT 60.296 42.308 0.00 0.00 0.00 3.32
106 107 5.873712 GGAGGTTTAAAGGACAGTTAGTAGC 59.126 44.000 0.00 0.00 0.00 3.58
107 108 6.212993 AGGGAGGTTTAAAGGACAGTTAGTAG 59.787 42.308 0.00 0.00 0.00 2.57
108 109 6.013984 CAGGGAGGTTTAAAGGACAGTTAGTA 60.014 42.308 0.00 0.00 0.00 1.82
109 110 4.912133 AGGGAGGTTTAAAGGACAGTTAGT 59.088 41.667 0.00 0.00 0.00 2.24
110 111 5.221864 ACAGGGAGGTTTAAAGGACAGTTAG 60.222 44.000 0.00 0.00 0.00 2.34
111 112 4.661709 ACAGGGAGGTTTAAAGGACAGTTA 59.338 41.667 0.00 0.00 0.00 2.24
112 113 3.462205 ACAGGGAGGTTTAAAGGACAGTT 59.538 43.478 0.00 0.00 0.00 3.16
113 114 3.053826 ACAGGGAGGTTTAAAGGACAGT 58.946 45.455 0.00 0.00 0.00 3.55
114 115 3.072476 TCACAGGGAGGTTTAAAGGACAG 59.928 47.826 0.00 0.00 0.00 3.51
115 116 3.050089 TCACAGGGAGGTTTAAAGGACA 58.950 45.455 0.00 0.00 0.00 4.02
116 117 3.326880 TCTCACAGGGAGGTTTAAAGGAC 59.673 47.826 0.00 0.00 44.19 3.85
117 118 3.593942 TCTCACAGGGAGGTTTAAAGGA 58.406 45.455 0.00 0.00 44.19 3.36
118 119 4.367039 TTCTCACAGGGAGGTTTAAAGG 57.633 45.455 0.00 0.00 44.19 3.11
119 120 5.828328 ACTTTTCTCACAGGGAGGTTTAAAG 59.172 40.000 0.00 7.67 44.19 1.85
120 121 5.592688 CACTTTTCTCACAGGGAGGTTTAAA 59.407 40.000 0.00 0.00 44.19 1.52
121 122 5.130350 CACTTTTCTCACAGGGAGGTTTAA 58.870 41.667 0.00 0.00 44.19 1.52
122 123 4.445735 CCACTTTTCTCACAGGGAGGTTTA 60.446 45.833 0.00 0.00 44.19 2.01
123 124 3.555966 CACTTTTCTCACAGGGAGGTTT 58.444 45.455 0.00 0.00 44.19 3.27
124 125 2.158608 CCACTTTTCTCACAGGGAGGTT 60.159 50.000 0.00 0.00 44.19 3.50
125 126 1.421646 CCACTTTTCTCACAGGGAGGT 59.578 52.381 0.00 0.00 44.19 3.85
126 127 1.884067 GCCACTTTTCTCACAGGGAGG 60.884 57.143 0.00 0.00 44.19 4.30
127 128 1.202806 TGCCACTTTTCTCACAGGGAG 60.203 52.381 0.00 0.00 45.49 4.30
128 129 0.843309 TGCCACTTTTCTCACAGGGA 59.157 50.000 0.00 0.00 0.00 4.20
129 130 1.815003 GATGCCACTTTTCTCACAGGG 59.185 52.381 0.00 0.00 0.00 4.45
130 131 2.507484 TGATGCCACTTTTCTCACAGG 58.493 47.619 0.00 0.00 0.00 4.00
131 132 4.778534 ATTGATGCCACTTTTCTCACAG 57.221 40.909 0.00 0.00 0.00 3.66
132 133 4.156556 GCTATTGATGCCACTTTTCTCACA 59.843 41.667 0.00 0.00 0.00 3.58
133 134 4.666237 GCTATTGATGCCACTTTTCTCAC 58.334 43.478 0.00 0.00 0.00 3.51
134 135 4.970662 GCTATTGATGCCACTTTTCTCA 57.029 40.909 0.00 0.00 0.00 3.27
155 156 2.102578 CAGGTTCCAGGCCTTATTTGG 58.897 52.381 0.00 0.78 33.31 3.28
156 157 1.478105 GCAGGTTCCAGGCCTTATTTG 59.522 52.381 0.00 0.00 33.31 2.32
157 158 1.619704 GGCAGGTTCCAGGCCTTATTT 60.620 52.381 0.00 0.00 44.32 1.40
158 159 0.033109 GGCAGGTTCCAGGCCTTATT 60.033 55.000 0.00 0.00 44.32 1.40
159 160 1.615262 GGCAGGTTCCAGGCCTTAT 59.385 57.895 0.00 0.00 44.32 1.73
160 161 3.087065 GGCAGGTTCCAGGCCTTA 58.913 61.111 0.00 0.00 44.32 2.69
164 165 2.132300 TTTTTGGCAGGTTCCAGGC 58.868 52.632 1.13 1.13 37.44 4.85
179 180 0.462375 GGCTTGTCGTTGGGGTTTTT 59.538 50.000 0.00 0.00 0.00 1.94
180 181 0.396556 AGGCTTGTCGTTGGGGTTTT 60.397 50.000 0.00 0.00 0.00 2.43
181 182 0.822121 GAGGCTTGTCGTTGGGGTTT 60.822 55.000 0.00 0.00 0.00 3.27
182 183 1.228154 GAGGCTTGTCGTTGGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
183 184 1.990160 TTGAGGCTTGTCGTTGGGGT 61.990 55.000 0.00 0.00 0.00 4.95
184 185 0.821711 TTTGAGGCTTGTCGTTGGGG 60.822 55.000 0.00 0.00 0.00 4.96
185 186 0.593128 CTTTGAGGCTTGTCGTTGGG 59.407 55.000 0.00 0.00 0.00 4.12
186 187 0.040067 GCTTTGAGGCTTGTCGTTGG 60.040 55.000 0.00 0.00 0.00 3.77
187 188 0.662619 TGCTTTGAGGCTTGTCGTTG 59.337 50.000 0.00 0.00 0.00 4.10
188 189 0.947244 CTGCTTTGAGGCTTGTCGTT 59.053 50.000 0.00 0.00 0.00 3.85
189 190 0.106708 TCTGCTTTGAGGCTTGTCGT 59.893 50.000 0.00 0.00 0.00 4.34
190 191 0.514691 GTCTGCTTTGAGGCTTGTCG 59.485 55.000 0.00 0.00 0.00 4.35
191 192 1.597742 TGTCTGCTTTGAGGCTTGTC 58.402 50.000 0.00 0.00 0.00 3.18
192 193 2.057137 TTGTCTGCTTTGAGGCTTGT 57.943 45.000 0.00 0.00 0.00 3.16
193 194 3.441496 TTTTGTCTGCTTTGAGGCTTG 57.559 42.857 0.00 0.00 0.00 4.01
194 195 3.430790 GGTTTTTGTCTGCTTTGAGGCTT 60.431 43.478 0.00 0.00 0.00 4.35
195 196 2.101415 GGTTTTTGTCTGCTTTGAGGCT 59.899 45.455 0.00 0.00 0.00 4.58
196 197 2.473816 GGTTTTTGTCTGCTTTGAGGC 58.526 47.619 0.00 0.00 0.00 4.70
197 198 2.695147 AGGGTTTTTGTCTGCTTTGAGG 59.305 45.455 0.00 0.00 0.00 3.86
198 199 3.243535 GGAGGGTTTTTGTCTGCTTTGAG 60.244 47.826 0.00 0.00 0.00 3.02
199 200 2.693074 GGAGGGTTTTTGTCTGCTTTGA 59.307 45.455 0.00 0.00 0.00 2.69
200 201 2.695147 AGGAGGGTTTTTGTCTGCTTTG 59.305 45.455 0.00 0.00 0.00 2.77
201 202 3.032265 AGGAGGGTTTTTGTCTGCTTT 57.968 42.857 0.00 0.00 0.00 3.51
202 203 2.755952 AGGAGGGTTTTTGTCTGCTT 57.244 45.000 0.00 0.00 0.00 3.91
203 204 3.876309 TTAGGAGGGTTTTTGTCTGCT 57.124 42.857 0.00 0.00 33.82 4.24
204 205 3.305403 GCTTTAGGAGGGTTTTTGTCTGC 60.305 47.826 0.00 0.00 0.00 4.26
205 206 3.888930 TGCTTTAGGAGGGTTTTTGTCTG 59.111 43.478 0.00 0.00 0.00 3.51
206 207 4.178956 TGCTTTAGGAGGGTTTTTGTCT 57.821 40.909 0.00 0.00 0.00 3.41
207 208 5.468540 AATGCTTTAGGAGGGTTTTTGTC 57.531 39.130 0.00 0.00 0.00 3.18
208 209 4.283467 GGAATGCTTTAGGAGGGTTTTTGT 59.717 41.667 0.00 0.00 0.00 2.83
209 210 4.528206 AGGAATGCTTTAGGAGGGTTTTTG 59.472 41.667 0.00 0.00 0.00 2.44
210 211 4.752063 AGGAATGCTTTAGGAGGGTTTTT 58.248 39.130 0.00 0.00 0.00 1.94
211 212 4.404185 AGGAATGCTTTAGGAGGGTTTT 57.596 40.909 0.00 0.00 0.00 2.43
212 213 4.089361 CAAGGAATGCTTTAGGAGGGTTT 58.911 43.478 0.00 0.00 0.00 3.27
213 214 3.564352 CCAAGGAATGCTTTAGGAGGGTT 60.564 47.826 0.00 0.00 0.00 4.11
214 215 2.024941 CCAAGGAATGCTTTAGGAGGGT 60.025 50.000 0.00 0.00 0.00 4.34
215 216 2.242196 TCCAAGGAATGCTTTAGGAGGG 59.758 50.000 0.00 0.00 0.00 4.30
216 217 3.054065 AGTCCAAGGAATGCTTTAGGAGG 60.054 47.826 0.00 0.00 0.00 4.30
217 218 4.227864 AGTCCAAGGAATGCTTTAGGAG 57.772 45.455 0.00 0.00 0.00 3.69
218 219 4.657814 AAGTCCAAGGAATGCTTTAGGA 57.342 40.909 0.00 0.00 0.00 2.94
219 220 4.524328 ACAAAGTCCAAGGAATGCTTTAGG 59.476 41.667 3.70 0.00 0.00 2.69
220 221 5.241506 TGACAAAGTCCAAGGAATGCTTTAG 59.758 40.000 3.70 2.72 0.00 1.85
221 222 5.009610 GTGACAAAGTCCAAGGAATGCTTTA 59.990 40.000 3.70 0.00 0.00 1.85
222 223 3.960102 TGACAAAGTCCAAGGAATGCTTT 59.040 39.130 0.00 0.00 0.00 3.51
223 224 3.319122 GTGACAAAGTCCAAGGAATGCTT 59.681 43.478 0.00 0.00 0.00 3.91
224 225 2.887152 GTGACAAAGTCCAAGGAATGCT 59.113 45.455 0.00 0.00 0.00 3.79
225 226 2.887152 AGTGACAAAGTCCAAGGAATGC 59.113 45.455 0.00 0.00 0.00 3.56
226 227 3.503748 GGAGTGACAAAGTCCAAGGAATG 59.496 47.826 0.00 0.00 46.52 2.67
227 228 3.756117 GGAGTGACAAAGTCCAAGGAAT 58.244 45.455 0.00 0.00 46.52 3.01
228 229 3.208747 GGAGTGACAAAGTCCAAGGAA 57.791 47.619 0.00 0.00 46.52 3.36
229 230 2.930826 GGAGTGACAAAGTCCAAGGA 57.069 50.000 0.00 0.00 46.52 3.36
234 235 1.056660 TCAGGGGAGTGACAAAGTCC 58.943 55.000 0.00 0.00 46.55 3.85
235 236 2.930826 TTCAGGGGAGTGACAAAGTC 57.069 50.000 0.00 0.00 0.00 3.01
236 237 2.443255 ACATTCAGGGGAGTGACAAAGT 59.557 45.455 0.00 0.00 35.01 2.66
237 238 2.816087 CACATTCAGGGGAGTGACAAAG 59.184 50.000 0.00 0.00 35.01 2.77
238 239 2.174639 ACACATTCAGGGGAGTGACAAA 59.825 45.455 0.00 0.00 35.01 2.83
239 240 1.774254 ACACATTCAGGGGAGTGACAA 59.226 47.619 0.00 0.00 35.01 3.18
240 241 1.434188 ACACATTCAGGGGAGTGACA 58.566 50.000 0.00 0.00 35.01 3.58
241 242 2.567615 AGTACACATTCAGGGGAGTGAC 59.432 50.000 0.00 0.00 35.01 3.67
242 243 2.832129 GAGTACACATTCAGGGGAGTGA 59.168 50.000 0.00 0.00 35.01 3.41
243 244 2.093447 GGAGTACACATTCAGGGGAGTG 60.093 54.545 0.00 0.00 36.86 3.51
244 245 2.188817 GGAGTACACATTCAGGGGAGT 58.811 52.381 0.00 0.00 0.00 3.85
245 246 2.187958 TGGAGTACACATTCAGGGGAG 58.812 52.381 0.00 0.00 0.00 4.30
246 247 2.335681 TGGAGTACACATTCAGGGGA 57.664 50.000 0.00 0.00 0.00 4.81
264 265 3.797039 AGATATTGATCACCACACCGTG 58.203 45.455 0.00 0.00 34.17 4.94
265 266 4.404394 TGTAGATATTGATCACCACACCGT 59.596 41.667 0.00 0.00 34.17 4.83
266 267 4.944048 TGTAGATATTGATCACCACACCG 58.056 43.478 0.00 0.00 34.17 4.94
267 268 8.150945 AGTATTGTAGATATTGATCACCACACC 58.849 37.037 0.00 0.00 34.17 4.16
270 271 9.640963 GGTAGTATTGTAGATATTGATCACCAC 57.359 37.037 0.00 0.00 34.17 4.16
271 272 9.601810 AGGTAGTATTGTAGATATTGATCACCA 57.398 33.333 0.00 0.00 34.17 4.17
276 277 9.998752 AGCCTAGGTAGTATTGTAGATATTGAT 57.001 33.333 11.31 0.00 0.00 2.57
277 278 9.824216 AAGCCTAGGTAGTATTGTAGATATTGA 57.176 33.333 11.31 0.00 0.00 2.57
278 279 9.862371 CAAGCCTAGGTAGTATTGTAGATATTG 57.138 37.037 11.31 0.00 0.00 1.90
279 280 9.603189 ACAAGCCTAGGTAGTATTGTAGATATT 57.397 33.333 11.31 0.00 32.04 1.28
280 281 9.245481 GACAAGCCTAGGTAGTATTGTAGATAT 57.755 37.037 11.31 0.00 33.18 1.63
281 282 7.668886 GGACAAGCCTAGGTAGTATTGTAGATA 59.331 40.741 11.31 0.00 33.18 1.98
282 283 6.494146 GGACAAGCCTAGGTAGTATTGTAGAT 59.506 42.308 11.31 0.00 33.18 1.98
283 284 5.832060 GGACAAGCCTAGGTAGTATTGTAGA 59.168 44.000 11.31 0.00 33.18 2.59
284 285 6.086785 GGACAAGCCTAGGTAGTATTGTAG 57.913 45.833 11.31 0.00 33.18 2.74
299 300 0.687354 TGAAGTGGAGAGGACAAGCC 59.313 55.000 0.00 0.00 0.00 4.35
300 301 1.609320 GGTGAAGTGGAGAGGACAAGC 60.609 57.143 0.00 0.00 0.00 4.01
301 302 1.974236 AGGTGAAGTGGAGAGGACAAG 59.026 52.381 0.00 0.00 0.00 3.16
302 303 2.103153 AGGTGAAGTGGAGAGGACAA 57.897 50.000 0.00 0.00 0.00 3.18
303 304 2.103153 AAGGTGAAGTGGAGAGGACA 57.897 50.000 0.00 0.00 0.00 4.02
304 305 2.368875 TCAAAGGTGAAGTGGAGAGGAC 59.631 50.000 0.00 0.00 0.00 3.85
305 306 2.689658 TCAAAGGTGAAGTGGAGAGGA 58.310 47.619 0.00 0.00 0.00 3.71
306 307 3.492102 TTCAAAGGTGAAGTGGAGAGG 57.508 47.619 0.00 0.00 38.88 3.69
307 308 4.645535 TCATTCAAAGGTGAAGTGGAGAG 58.354 43.478 0.00 0.00 46.75 3.20
308 309 4.705110 TCATTCAAAGGTGAAGTGGAGA 57.295 40.909 0.00 0.00 46.75 3.71
309 310 5.972107 ATTCATTCAAAGGTGAAGTGGAG 57.028 39.130 0.00 0.00 46.75 3.86
310 311 6.303054 TGTATTCATTCAAAGGTGAAGTGGA 58.697 36.000 0.00 0.00 46.75 4.02
311 312 6.573664 TGTATTCATTCAAAGGTGAAGTGG 57.426 37.500 0.00 0.00 46.75 4.00
312 313 7.424803 TGTTGTATTCATTCAAAGGTGAAGTG 58.575 34.615 0.00 0.00 46.75 3.16
313 314 7.581213 TGTTGTATTCATTCAAAGGTGAAGT 57.419 32.000 0.00 0.00 46.75 3.01
314 315 9.480053 AATTGTTGTATTCATTCAAAGGTGAAG 57.520 29.630 0.00 0.00 46.75 3.02
329 330 9.051679 GGCAGGAAAGTTTTTAATTGTTGTATT 57.948 29.630 0.00 0.00 0.00 1.89
330 331 8.207545 TGGCAGGAAAGTTTTTAATTGTTGTAT 58.792 29.630 0.00 0.00 0.00 2.29
331 332 7.556844 TGGCAGGAAAGTTTTTAATTGTTGTA 58.443 30.769 0.00 0.00 0.00 2.41
332 333 6.410540 TGGCAGGAAAGTTTTTAATTGTTGT 58.589 32.000 0.00 0.00 0.00 3.32
333 334 6.538381 ACTGGCAGGAAAGTTTTTAATTGTTG 59.462 34.615 20.34 0.00 0.00 3.33
334 335 6.649155 ACTGGCAGGAAAGTTTTTAATTGTT 58.351 32.000 20.34 0.00 0.00 2.83
335 336 6.233905 ACTGGCAGGAAAGTTTTTAATTGT 57.766 33.333 20.34 0.00 0.00 2.71
336 337 7.170828 GGTAACTGGCAGGAAAGTTTTTAATTG 59.829 37.037 20.34 0.00 37.74 2.32
337 338 7.147637 TGGTAACTGGCAGGAAAGTTTTTAATT 60.148 33.333 20.34 1.43 37.74 1.40
338 339 6.325286 TGGTAACTGGCAGGAAAGTTTTTAAT 59.675 34.615 20.34 0.00 37.74 1.40
339 340 5.657302 TGGTAACTGGCAGGAAAGTTTTTAA 59.343 36.000 20.34 0.00 37.74 1.52
340 341 5.202004 TGGTAACTGGCAGGAAAGTTTTTA 58.798 37.500 20.34 2.66 37.74 1.52
341 342 4.027437 TGGTAACTGGCAGGAAAGTTTTT 58.973 39.130 20.34 3.69 37.74 1.94
342 343 3.637769 TGGTAACTGGCAGGAAAGTTTT 58.362 40.909 20.34 4.46 37.74 2.43
343 344 3.306472 TGGTAACTGGCAGGAAAGTTT 57.694 42.857 20.34 5.22 37.74 2.66
344 345 3.525800 ATGGTAACTGGCAGGAAAGTT 57.474 42.857 20.34 6.88 39.82 2.66
345 346 3.329520 TGTATGGTAACTGGCAGGAAAGT 59.670 43.478 20.34 2.76 37.61 2.66
346 347 3.950397 TGTATGGTAACTGGCAGGAAAG 58.050 45.455 20.34 0.00 37.61 2.62
347 348 4.584638 ATGTATGGTAACTGGCAGGAAA 57.415 40.909 20.34 0.02 37.61 3.13
348 349 4.966168 TCTATGTATGGTAACTGGCAGGAA 59.034 41.667 20.34 2.88 37.61 3.36
349 350 4.552674 TCTATGTATGGTAACTGGCAGGA 58.447 43.478 20.34 3.02 37.61 3.86
350 351 4.955811 TCTATGTATGGTAACTGGCAGG 57.044 45.455 20.34 0.58 37.61 4.85
351 352 5.934625 GGATTCTATGTATGGTAACTGGCAG 59.065 44.000 14.16 14.16 37.61 4.85
352 353 5.368230 TGGATTCTATGTATGGTAACTGGCA 59.632 40.000 0.00 0.00 37.61 4.92
353 354 5.865085 TGGATTCTATGTATGGTAACTGGC 58.135 41.667 0.00 0.00 37.61 4.85
354 355 7.766278 GCTATGGATTCTATGTATGGTAACTGG 59.234 40.741 0.00 0.00 37.61 4.00
355 356 7.766278 GGCTATGGATTCTATGTATGGTAACTG 59.234 40.741 0.00 0.00 37.61 3.16
356 357 7.680310 AGGCTATGGATTCTATGTATGGTAACT 59.320 37.037 0.00 0.00 37.61 2.24
357 358 7.766278 CAGGCTATGGATTCTATGTATGGTAAC 59.234 40.741 0.00 0.00 0.00 2.50
358 359 7.457852 ACAGGCTATGGATTCTATGTATGGTAA 59.542 37.037 0.00 0.00 0.00 2.85
359 360 6.959954 ACAGGCTATGGATTCTATGTATGGTA 59.040 38.462 0.00 0.00 0.00 3.25
360 361 5.787494 ACAGGCTATGGATTCTATGTATGGT 59.213 40.000 0.00 0.00 0.00 3.55
361 362 6.305272 ACAGGCTATGGATTCTATGTATGG 57.695 41.667 0.00 0.00 0.00 2.74
362 363 7.164122 ACAACAGGCTATGGATTCTATGTATG 58.836 38.462 4.71 0.00 0.00 2.39
363 364 7.321717 ACAACAGGCTATGGATTCTATGTAT 57.678 36.000 4.71 0.00 0.00 2.29
364 365 6.747414 ACAACAGGCTATGGATTCTATGTA 57.253 37.500 4.71 0.00 0.00 2.29
365 366 5.636903 ACAACAGGCTATGGATTCTATGT 57.363 39.130 4.71 0.00 0.00 2.29
366 367 6.949352 AAACAACAGGCTATGGATTCTATG 57.051 37.500 4.71 0.00 0.00 2.23
367 368 8.439971 TGATAAACAACAGGCTATGGATTCTAT 58.560 33.333 4.71 0.00 0.00 1.98
368 369 7.801104 TGATAAACAACAGGCTATGGATTCTA 58.199 34.615 4.71 0.00 0.00 2.10
369 370 6.662755 TGATAAACAACAGGCTATGGATTCT 58.337 36.000 4.71 0.00 0.00 2.40
370 371 6.942532 TGATAAACAACAGGCTATGGATTC 57.057 37.500 4.71 0.00 0.00 2.52
371 372 7.560991 TCAATGATAAACAACAGGCTATGGATT 59.439 33.333 4.71 2.51 0.00 3.01
372 373 7.062322 TCAATGATAAACAACAGGCTATGGAT 58.938 34.615 4.71 0.00 0.00 3.41
373 374 6.422333 TCAATGATAAACAACAGGCTATGGA 58.578 36.000 4.71 0.00 0.00 3.41
374 375 6.698008 TCAATGATAAACAACAGGCTATGG 57.302 37.500 4.71 0.00 0.00 2.74
375 376 7.537715 TGTTCAATGATAAACAACAGGCTATG 58.462 34.615 0.00 0.00 32.69 2.23
376 377 7.701539 TGTTCAATGATAAACAACAGGCTAT 57.298 32.000 0.00 0.00 32.69 2.97
377 378 7.517614 TTGTTCAATGATAAACAACAGGCTA 57.482 32.000 2.92 0.00 39.70 3.93
378 379 6.403866 TTGTTCAATGATAAACAACAGGCT 57.596 33.333 2.92 0.00 39.70 4.58
384 385 7.581213 ACTGAGGTTGTTCAATGATAAACAA 57.419 32.000 9.70 3.57 41.67 2.83
385 386 7.581213 AACTGAGGTTGTTCAATGATAAACA 57.419 32.000 9.70 0.00 33.96 2.83
386 387 8.871686 AAAACTGAGGTTGTTCAATGATAAAC 57.128 30.769 0.00 1.32 35.63 2.01
455 456 6.996180 AATCCCGGAACTCTAGAAATCATA 57.004 37.500 0.73 0.00 0.00 2.15
457 458 5.897824 AGTAATCCCGGAACTCTAGAAATCA 59.102 40.000 0.73 0.00 0.00 2.57
606 607 2.032675 GTCCTATCGTCGTCCCACTTAC 59.967 54.545 0.00 0.00 0.00 2.34
607 608 2.292267 GTCCTATCGTCGTCCCACTTA 58.708 52.381 0.00 0.00 0.00 2.24
610 611 1.030457 ATGTCCTATCGTCGTCCCAC 58.970 55.000 0.00 0.00 0.00 4.61
920 921 3.886505 ACAAAGTATTTCCGCTGGAACAA 59.113 39.130 9.15 0.00 41.87 2.83
1048 1049 6.344500 CATCTGCTAGAGGTTGTAACAATCT 58.656 40.000 0.00 0.52 33.08 2.40
1310 1311 3.752747 TCGTATATCATAGGCGACCGAAA 59.247 43.478 0.00 0.00 0.00 3.46
1370 1372 4.765856 ACACCTGTGTAGAGTAGATCGTTT 59.234 41.667 0.05 0.00 42.90 3.60
1456 1458 4.826404 TTCTCGATCCCGGCCCGA 62.826 66.667 3.71 3.17 36.24 5.14
1496 1498 2.462456 ATGAGCTGCGAAGAGAAACA 57.538 45.000 0.00 0.00 0.00 2.83
1510 1512 6.706295 AGCTACCTTTCCTATTGATATGAGC 58.294 40.000 0.00 0.00 0.00 4.26
1544 1546 7.430760 AGCTAGAATTTCCAATAGTGAGACT 57.569 36.000 0.00 0.00 0.00 3.24
1594 1598 5.882557 CAGGTCCTTAGTAGCATTGACAAAT 59.117 40.000 0.00 0.00 0.00 2.32
1625 1629 4.842531 TCTTTCATCCATCAAGTAGGCA 57.157 40.909 0.00 0.00 0.00 4.75
1782 1786 1.469126 GCTACATACGCACCGACACG 61.469 60.000 0.00 0.00 0.00 4.49
2186 2190 2.565645 CGATTCGATCCGCCCCTCT 61.566 63.158 0.00 0.00 0.00 3.69
2188 2192 3.616721 CCGATTCGATCCGCCCCT 61.617 66.667 7.83 0.00 0.00 4.79
2272 2279 9.630098 GCAGAAGAACATCAAAGATAAATTCAA 57.370 29.630 0.00 0.00 0.00 2.69
2273 2280 8.795513 TGCAGAAGAACATCAAAGATAAATTCA 58.204 29.630 0.00 0.00 0.00 2.57
2274 2281 9.630098 TTGCAGAAGAACATCAAAGATAAATTC 57.370 29.630 0.00 0.00 0.00 2.17
2277 2284 9.630098 GAATTGCAGAAGAACATCAAAGATAAA 57.370 29.630 0.00 0.00 0.00 1.40
2278 2285 8.246180 GGAATTGCAGAAGAACATCAAAGATAA 58.754 33.333 0.00 0.00 0.00 1.75
2279 2286 7.613022 AGGAATTGCAGAAGAACATCAAAGATA 59.387 33.333 0.00 0.00 0.00 1.98
2280 2287 6.436532 AGGAATTGCAGAAGAACATCAAAGAT 59.563 34.615 0.00 0.00 0.00 2.40
2281 2288 5.771666 AGGAATTGCAGAAGAACATCAAAGA 59.228 36.000 0.00 0.00 0.00 2.52
2282 2289 6.022163 AGGAATTGCAGAAGAACATCAAAG 57.978 37.500 0.00 0.00 0.00 2.77
2283 2290 6.409524 AAGGAATTGCAGAAGAACATCAAA 57.590 33.333 0.00 0.00 0.00 2.69
2284 2291 6.218019 CAAAGGAATTGCAGAAGAACATCAA 58.782 36.000 0.00 0.00 31.00 2.57
2285 2292 5.279106 CCAAAGGAATTGCAGAAGAACATCA 60.279 40.000 0.00 0.00 37.73 3.07
2286 2293 5.047802 TCCAAAGGAATTGCAGAAGAACATC 60.048 40.000 0.00 0.00 37.73 3.06
2287 2294 4.834496 TCCAAAGGAATTGCAGAAGAACAT 59.166 37.500 0.00 0.00 37.73 2.71
2288 2295 4.037923 GTCCAAAGGAATTGCAGAAGAACA 59.962 41.667 0.00 0.00 37.73 3.18
2289 2296 4.550422 GTCCAAAGGAATTGCAGAAGAAC 58.450 43.478 0.00 0.00 37.73 3.01
2290 2297 3.573967 GGTCCAAAGGAATTGCAGAAGAA 59.426 43.478 0.00 0.00 37.73 2.52
2291 2298 3.157087 GGTCCAAAGGAATTGCAGAAGA 58.843 45.455 0.00 0.00 37.73 2.87
2292 2299 2.232208 GGGTCCAAAGGAATTGCAGAAG 59.768 50.000 0.00 0.00 37.73 2.85
2293 2300 2.247358 GGGTCCAAAGGAATTGCAGAA 58.753 47.619 0.00 0.00 37.73 3.02
2294 2301 1.146774 TGGGTCCAAAGGAATTGCAGA 59.853 47.619 0.00 0.00 37.73 4.26
2295 2302 1.273327 GTGGGTCCAAAGGAATTGCAG 59.727 52.381 0.00 0.00 37.73 4.41
2296 2303 1.133199 AGTGGGTCCAAAGGAATTGCA 60.133 47.619 0.00 0.00 37.73 4.08
2297 2304 1.632589 AGTGGGTCCAAAGGAATTGC 58.367 50.000 0.00 0.00 37.73 3.56
2298 2305 2.289010 GCAAGTGGGTCCAAAGGAATTG 60.289 50.000 0.00 0.00 38.84 2.32
2299 2306 1.970640 GCAAGTGGGTCCAAAGGAATT 59.029 47.619 0.00 0.00 31.38 2.17
2300 2307 1.147817 AGCAAGTGGGTCCAAAGGAAT 59.852 47.619 0.00 0.00 31.38 3.01
2301 2308 0.555769 AGCAAGTGGGTCCAAAGGAA 59.444 50.000 0.00 0.00 31.38 3.36
2302 2309 0.178992 CAGCAAGTGGGTCCAAAGGA 60.179 55.000 0.00 0.00 0.00 3.36
2303 2310 1.181098 CCAGCAAGTGGGTCCAAAGG 61.181 60.000 0.00 0.00 43.63 3.11
2304 2311 2.344535 CCAGCAAGTGGGTCCAAAG 58.655 57.895 0.00 0.00 43.63 2.77
2305 2312 4.597032 CCAGCAAGTGGGTCCAAA 57.403 55.556 0.00 0.00 43.63 3.28
2313 2320 3.447742 GGTGAAAGAAAACCAGCAAGTG 58.552 45.455 0.00 0.00 36.41 3.16
2314 2321 2.430694 GGGTGAAAGAAAACCAGCAAGT 59.569 45.455 0.00 0.00 38.27 3.16
2315 2322 2.430332 TGGGTGAAAGAAAACCAGCAAG 59.570 45.455 0.00 0.00 38.27 4.01
2316 2323 2.167487 GTGGGTGAAAGAAAACCAGCAA 59.833 45.455 0.00 0.00 38.27 3.91
2317 2324 1.754226 GTGGGTGAAAGAAAACCAGCA 59.246 47.619 0.00 0.00 38.27 4.41
2318 2325 2.031870 AGTGGGTGAAAGAAAACCAGC 58.968 47.619 0.00 0.00 38.27 4.85
2319 2326 3.954258 AGAAGTGGGTGAAAGAAAACCAG 59.046 43.478 0.00 0.00 38.27 4.00
2320 2327 3.976015 AGAAGTGGGTGAAAGAAAACCA 58.024 40.909 0.00 0.00 38.27 3.67
2321 2328 5.339008 AAAGAAGTGGGTGAAAGAAAACC 57.661 39.130 0.00 0.00 35.59 3.27
2322 2329 7.096884 AGTAAAGAAGTGGGTGAAAGAAAAC 57.903 36.000 0.00 0.00 0.00 2.43
2323 2330 7.614192 AGAAGTAAAGAAGTGGGTGAAAGAAAA 59.386 33.333 0.00 0.00 0.00 2.29
2324 2331 7.116736 AGAAGTAAAGAAGTGGGTGAAAGAAA 58.883 34.615 0.00 0.00 0.00 2.52
2325 2332 6.659824 AGAAGTAAAGAAGTGGGTGAAAGAA 58.340 36.000 0.00 0.00 0.00 2.52
2326 2333 6.248569 AGAAGTAAAGAAGTGGGTGAAAGA 57.751 37.500 0.00 0.00 0.00 2.52
2327 2334 6.768381 AGAAGAAGTAAAGAAGTGGGTGAAAG 59.232 38.462 0.00 0.00 0.00 2.62
2328 2335 6.542370 CAGAAGAAGTAAAGAAGTGGGTGAAA 59.458 38.462 0.00 0.00 0.00 2.69
2329 2336 6.055588 CAGAAGAAGTAAAGAAGTGGGTGAA 58.944 40.000 0.00 0.00 0.00 3.18
2330 2337 5.611374 CAGAAGAAGTAAAGAAGTGGGTGA 58.389 41.667 0.00 0.00 0.00 4.02
2331 2338 4.214332 GCAGAAGAAGTAAAGAAGTGGGTG 59.786 45.833 0.00 0.00 0.00 4.61
2332 2339 4.390264 GCAGAAGAAGTAAAGAAGTGGGT 58.610 43.478 0.00 0.00 0.00 4.51
2333 2340 3.753797 GGCAGAAGAAGTAAAGAAGTGGG 59.246 47.826 0.00 0.00 0.00 4.61
2334 2341 4.214332 GTGGCAGAAGAAGTAAAGAAGTGG 59.786 45.833 0.00 0.00 0.00 4.00
2335 2342 4.214332 GGTGGCAGAAGAAGTAAAGAAGTG 59.786 45.833 0.00 0.00 0.00 3.16
2336 2343 4.390264 GGTGGCAGAAGAAGTAAAGAAGT 58.610 43.478 0.00 0.00 0.00 3.01
2337 2344 3.753797 GGGTGGCAGAAGAAGTAAAGAAG 59.246 47.826 0.00 0.00 0.00 2.85
2338 2345 3.137544 TGGGTGGCAGAAGAAGTAAAGAA 59.862 43.478 0.00 0.00 0.00 2.52
2339 2346 2.708861 TGGGTGGCAGAAGAAGTAAAGA 59.291 45.455 0.00 0.00 0.00 2.52
2340 2347 3.140325 TGGGTGGCAGAAGAAGTAAAG 57.860 47.619 0.00 0.00 0.00 1.85
2341 2348 3.330701 AGATGGGTGGCAGAAGAAGTAAA 59.669 43.478 0.00 0.00 0.00 2.01
2342 2349 2.912956 AGATGGGTGGCAGAAGAAGTAA 59.087 45.455 0.00 0.00 0.00 2.24
2343 2350 2.551270 AGATGGGTGGCAGAAGAAGTA 58.449 47.619 0.00 0.00 0.00 2.24
2344 2351 1.366319 AGATGGGTGGCAGAAGAAGT 58.634 50.000 0.00 0.00 0.00 3.01
2345 2352 2.089980 CAAGATGGGTGGCAGAAGAAG 58.910 52.381 0.00 0.00 0.00 2.85
2346 2353 1.704628 TCAAGATGGGTGGCAGAAGAA 59.295 47.619 0.00 0.00 0.00 2.52
2347 2354 1.003580 GTCAAGATGGGTGGCAGAAGA 59.996 52.381 0.00 0.00 0.00 2.87
2348 2355 1.004044 AGTCAAGATGGGTGGCAGAAG 59.996 52.381 0.00 0.00 0.00 2.85
2349 2356 1.067295 AGTCAAGATGGGTGGCAGAA 58.933 50.000 0.00 0.00 0.00 3.02
2350 2357 1.067295 AAGTCAAGATGGGTGGCAGA 58.933 50.000 0.00 0.00 0.00 4.26
2351 2358 1.171308 CAAGTCAAGATGGGTGGCAG 58.829 55.000 0.00 0.00 0.00 4.85
2352 2359 0.251297 CCAAGTCAAGATGGGTGGCA 60.251 55.000 0.00 0.00 32.87 4.92
2353 2360 1.598701 GCCAAGTCAAGATGGGTGGC 61.599 60.000 0.00 0.00 44.23 5.01
2354 2361 0.038744 AGCCAAGTCAAGATGGGTGG 59.961 55.000 0.00 0.00 45.24 4.61
2355 2362 1.004044 AGAGCCAAGTCAAGATGGGTG 59.996 52.381 0.64 0.00 46.82 4.61
2357 2364 2.503356 AGTAGAGCCAAGTCAAGATGGG 59.497 50.000 0.00 0.00 37.19 4.00
2358 2365 3.196469 TCAGTAGAGCCAAGTCAAGATGG 59.804 47.826 0.00 0.00 39.80 3.51
2359 2366 4.462508 TCAGTAGAGCCAAGTCAAGATG 57.537 45.455 0.00 0.00 0.00 2.90
2360 2367 5.046014 ACAATCAGTAGAGCCAAGTCAAGAT 60.046 40.000 0.00 0.00 0.00 2.40
2361 2368 4.284490 ACAATCAGTAGAGCCAAGTCAAGA 59.716 41.667 0.00 0.00 0.00 3.02
2362 2369 4.573900 ACAATCAGTAGAGCCAAGTCAAG 58.426 43.478 0.00 0.00 0.00 3.02
2363 2370 4.623932 ACAATCAGTAGAGCCAAGTCAA 57.376 40.909 0.00 0.00 0.00 3.18
2364 2371 5.163405 GGATACAATCAGTAGAGCCAAGTCA 60.163 44.000 0.00 0.00 35.85 3.41
2365 2372 5.069781 AGGATACAATCAGTAGAGCCAAGTC 59.930 44.000 0.00 0.00 35.85 3.01
2366 2373 4.965532 AGGATACAATCAGTAGAGCCAAGT 59.034 41.667 0.00 0.00 35.85 3.16
2367 2374 5.543507 AGGATACAATCAGTAGAGCCAAG 57.456 43.478 0.00 0.00 35.85 3.61
2368 2375 5.163301 GGAAGGATACAATCAGTAGAGCCAA 60.163 44.000 0.00 0.00 35.85 4.52
2369 2376 4.345257 GGAAGGATACAATCAGTAGAGCCA 59.655 45.833 0.00 0.00 35.85 4.75
2370 2377 4.591072 AGGAAGGATACAATCAGTAGAGCC 59.409 45.833 0.00 0.00 35.85 4.70
2371 2378 5.799827 AGGAAGGATACAATCAGTAGAGC 57.200 43.478 0.00 0.00 35.85 4.09
2388 2395 4.164221 TGCTAGGAATCAACCCTTAGGAAG 59.836 45.833 0.00 0.00 35.30 3.46
2389 2396 4.108570 TGCTAGGAATCAACCCTTAGGAA 58.891 43.478 0.00 0.00 35.30 3.36
2390 2397 3.731431 TGCTAGGAATCAACCCTTAGGA 58.269 45.455 0.00 0.00 35.30 2.94
2391 2398 4.141390 ACATGCTAGGAATCAACCCTTAGG 60.141 45.833 0.00 0.00 35.30 2.69
2392 2399 4.818546 CACATGCTAGGAATCAACCCTTAG 59.181 45.833 0.00 0.00 35.30 2.18
2393 2400 4.227300 ACACATGCTAGGAATCAACCCTTA 59.773 41.667 0.00 0.00 35.30 2.69
2394 2401 3.010584 ACACATGCTAGGAATCAACCCTT 59.989 43.478 0.00 0.00 35.30 3.95
2395 2402 2.578021 ACACATGCTAGGAATCAACCCT 59.422 45.455 0.00 0.00 37.80 4.34
2396 2403 2.684881 CACACATGCTAGGAATCAACCC 59.315 50.000 0.00 0.00 0.00 4.11
2410 2417 4.037923 AGTGAACCCTTTTAAGCACACATG 59.962 41.667 0.00 0.00 0.00 3.21
2411 2418 4.215109 AGTGAACCCTTTTAAGCACACAT 58.785 39.130 0.00 0.00 0.00 3.21
2412 2419 3.626930 AGTGAACCCTTTTAAGCACACA 58.373 40.909 0.00 0.00 0.00 3.72
2413 2420 4.649088 AAGTGAACCCTTTTAAGCACAC 57.351 40.909 0.00 0.00 0.00 3.82
2414 2421 4.707448 TCAAAGTGAACCCTTTTAAGCACA 59.293 37.500 0.00 0.00 32.42 4.57
2415 2422 5.041287 GTCAAAGTGAACCCTTTTAAGCAC 58.959 41.667 0.00 0.00 32.42 4.40
2416 2423 4.098807 GGTCAAAGTGAACCCTTTTAAGCA 59.901 41.667 0.00 0.00 32.42 3.91
2417 2424 4.341235 AGGTCAAAGTGAACCCTTTTAAGC 59.659 41.667 0.00 0.00 33.71 3.09
2418 2425 5.592688 TCAGGTCAAAGTGAACCCTTTTAAG 59.407 40.000 0.00 0.00 33.71 1.85
2419 2426 5.511363 TCAGGTCAAAGTGAACCCTTTTAA 58.489 37.500 0.00 0.00 33.71 1.52
2420 2427 5.118729 TCAGGTCAAAGTGAACCCTTTTA 57.881 39.130 0.00 0.00 33.71 1.52
2421 2428 3.976015 TCAGGTCAAAGTGAACCCTTTT 58.024 40.909 0.00 0.00 33.71 2.27
2422 2429 3.662759 TCAGGTCAAAGTGAACCCTTT 57.337 42.857 0.00 0.00 33.71 3.11
2423 2430 3.288092 GTTCAGGTCAAAGTGAACCCTT 58.712 45.455 4.22 0.00 44.54 3.95
2424 2431 2.932261 GTTCAGGTCAAAGTGAACCCT 58.068 47.619 4.22 0.00 44.54 4.34
2428 2435 5.008613 GCACTAATGTTCAGGTCAAAGTGAA 59.991 40.000 0.00 0.00 36.18 3.18
2429 2436 4.515191 GCACTAATGTTCAGGTCAAAGTGA 59.485 41.667 0.00 0.00 36.18 3.41
2430 2437 4.516698 AGCACTAATGTTCAGGTCAAAGTG 59.483 41.667 0.00 0.00 36.67 3.16
2431 2438 4.718961 AGCACTAATGTTCAGGTCAAAGT 58.281 39.130 0.00 0.00 0.00 2.66
2432 2439 6.992063 ATAGCACTAATGTTCAGGTCAAAG 57.008 37.500 0.00 0.00 0.00 2.77
2433 2440 7.360861 CGAAATAGCACTAATGTTCAGGTCAAA 60.361 37.037 0.00 0.00 0.00 2.69
2434 2441 6.092122 CGAAATAGCACTAATGTTCAGGTCAA 59.908 38.462 0.00 0.00 0.00 3.18
2435 2442 5.580691 CGAAATAGCACTAATGTTCAGGTCA 59.419 40.000 0.00 0.00 0.00 4.02
2436 2443 5.502544 GCGAAATAGCACTAATGTTCAGGTC 60.503 44.000 0.00 0.00 37.05 3.85
2437 2444 4.332819 GCGAAATAGCACTAATGTTCAGGT 59.667 41.667 0.00 0.00 37.05 4.00
2438 2445 4.332543 TGCGAAATAGCACTAATGTTCAGG 59.667 41.667 0.00 0.00 42.92 3.86
2439 2446 5.469373 TGCGAAATAGCACTAATGTTCAG 57.531 39.130 0.00 0.00 42.92 3.02
2459 2466 1.598924 GGCTGCTCGCATCTAAAATGC 60.599 52.381 0.00 0.00 41.67 3.56
2460 2467 1.945394 AGGCTGCTCGCATCTAAAATG 59.055 47.619 0.00 0.00 41.67 2.32
2461 2468 2.216898 GAGGCTGCTCGCATCTAAAAT 58.783 47.619 0.00 0.00 45.51 1.82
2462 2469 1.656652 GAGGCTGCTCGCATCTAAAA 58.343 50.000 0.00 0.00 45.51 1.52
2463 2470 3.369381 GAGGCTGCTCGCATCTAAA 57.631 52.632 0.00 0.00 45.51 1.85
2468 2475 2.203167 CATGGAGGCTGCTCGCAT 60.203 61.111 7.74 0.00 41.67 4.73
2469 2476 4.478371 CCATGGAGGCTGCTCGCA 62.478 66.667 5.56 0.00 41.67 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.