AutoCloner

Multiple sequence alignment - TraesCS5B01G338700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G338700	chr5B	100.000	3572	0	0	1	3572	522862672	522859101	0.000000e+00	6597.0
1	TraesCS5B01G338700	chr5B	93.954	2944	118	21	521	3437	522407942	522410852	0.000000e+00	4396.0
2	TraesCS5B01G338700	chr5B	88.503	374	24	9	162	518	522932276	522931905	5.480000e-118	435.0
3	TraesCS5B01G338700	chr5B	93.392	227	2	3	527	741	522931485	522931260	1.240000e-84	324.0
4	TraesCS5B01G338700	chr5B	92.647	204	14	1	2534	2736	521276716	521276513	3.490000e-75	292.0
5	TraesCS5B01G338700	chr5B	95.935	123	4	1	40	161	522656739	522656861	7.820000e-47	198.0
6	TraesCS5B01G338700	chr5B	79.755	326	23	10	151	438	522407018	522407338	2.810000e-46	196.0
7	TraesCS5B01G338700	chr5B	97.561	41	1	0	3	43	522406986	522407026	1.780000e-08	71.3
8	TraesCS5B01G338700	chr5B	93.023	43	3	0	1	43	522932322	522932280	2.980000e-06	63.9
9	TraesCS5B01G338700	chr5D	98.571	3430	30	5	151	3572	513307274	513310692	0.000000e+00	6045.0
10	TraesCS5B01G338700	chr5D	96.786	3422	37	10	157	3572	433685579	433682225	0.000000e+00	5642.0
11	TraesCS5B01G338700	chr5D	98.626	2985	29	4	588	3572	431780586	431783558	0.000000e+00	5275.0
12	TraesCS5B01G338700	chr5D	93.202	456	6	4	151	592	431779985	431780429	0.000000e+00	647.0
13	TraesCS5B01G338700	chr5D	93.182	132	7	2	42	172	420228167	420228297	3.640000e-45	193.0
14	TraesCS5B01G338700	chr5D	92.481	133	8	2	33	164	566048414	566048283	4.710000e-44	189.0
15	TraesCS5B01G338700	chr5D	100.000	45	0	0	1	45	431779950	431779994	2.290000e-12	84.2
16	TraesCS5B01G338700	chr5D	100.000	45	0	0	1	45	513307239	513307283	2.290000e-12	84.2
17	TraesCS5B01G338700	chr5D	97.778	45	1	0	1	45	433685620	433685576	1.060000e-10	78.7
18	TraesCS5B01G338700	chr5A	94.591	3069	126	19	442	3485	546771285	546768232	0.000000e+00	4711.0
19	TraesCS5B01G338700	chr5A	85.065	308	19	8	151	438	546771832	546771532	4.510000e-74	289.0
20	TraesCS5B01G338700	chr5A	97.674	43	1	0	1	43	546771866	546771824	1.380000e-09	75.0
21	TraesCS5B01G338700	chr5A	97.436	39	1	0	3487	3525	546768212	546768174	2.300000e-07	67.6
22	TraesCS5B01G338700	chr2B	82.559	1852	194	55	1030	2819	41137071	41138855	0.000000e+00	1511.0
23	TraesCS5B01G338700	chr2B	87.264	212	23	4	1030	1238	41141186	41141396	4.610000e-59	239.0
24	TraesCS5B01G338700	chr2B	83.333	168	18	8	634	801	41132174	41132331	2.870000e-31	147.0
25	TraesCS5B01G338700	chr2B	90.566	53	0	2	919	971	41141059	41141106	8.280000e-07	65.8
26	TraesCS5B01G338700	chr2B	89.091	55	1	1	917	971	41132574	41132623	2.980000e-06	63.9
27	TraesCS5B01G338700	chr2A	83.402	1699	166	47	1030	2680	27956706	27958336	0.000000e+00	1469.0
28	TraesCS5B01G338700	chr2A	84.470	1320	143	29	1320	2596	27952723	27954023	0.000000e+00	1245.0
29	TraesCS5B01G338700	chr2A	84.425	1130	120	35	1030	2124	27963001	27964109	0.000000e+00	1061.0
30	TraesCS5B01G338700	chr2A	82.955	176	19	8	634	809	27951922	27952086	7.990000e-32	148.0
31	TraesCS5B01G338700	chr2A	89.091	55	1	1	917	971	27952322	27952371	2.980000e-06	63.9
32	TraesCS5B01G338700	chr2A	96.774	31	1	0	13	43	27961929	27961959	6.000000e-03	52.8
33	TraesCS5B01G338700	chr2D	83.534	1409	163	35	1372	2738	25339348	25340729	0.000000e+00	1253.0
34	TraesCS5B01G338700	chr2D	84.725	1126	114	34	1030	2120	25347630	25348732	0.000000e+00	1074.0
35	TraesCS5B01G338700	chr2D	83.922	566	60	15	2193	2735	25348727	25349284	2.460000e-141	512.0
36	TraesCS5B01G338700	chr2D	90.566	212	13	6	1030	1235	25339017	25339227	1.260000e-69	274.0
37	TraesCS5B01G338700	chr2D	85.119	168	14	8	627	794	25338482	25338638	1.030000e-35	161.0
38	TraesCS5B01G338700	chr2D	97.297	37	1	0	935	971	25338888	25338924	2.980000e-06	63.9
39	TraesCS5B01G338700	chr2D	96.774	31	1	0	13	43	25346562	25346592	6.000000e-03	52.8
40	TraesCS5B01G338700	chr7A	98.319	119	2	0	40	158	732809998	732810116	3.610000e-50	209.0
41	TraesCS5B01G338700	chr6B	95.833	120	5	0	42	161	130306046	130306165	1.010000e-45	195.0
42	TraesCS5B01G338700	chr3D	93.701	127	7	1	39	165	46259482	46259357	4.710000e-44	189.0
43	TraesCS5B01G338700	chr1B	94.355	124	6	1	42	165	623107178	623107056	4.710000e-44	189.0
44	TraesCS5B01G338700	chr1A	94.355	124	6	1	42	165	320509599	320509477	4.710000e-44	189.0
45	TraesCS5B01G338700	chr4D	93.023	129	8	1	42	169	234179258	234179130	1.690000e-43	187.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G338700	chr5B	522859101	522862672	3571	True	6597.000000	6597	100.000000	1	3572	1	chr5B.!!$R2	3571
1	TraesCS5B01G338700	chr5B	522406986	522410852	3866	False	1554.433333	4396	90.423333	3	3437	3	chr5B.!!$F2	3434
2	TraesCS5B01G338700	chr5B	522931260	522932322	1062	True	274.300000	435	91.639333	1	741	3	chr5B.!!$R3	740
3	TraesCS5B01G338700	chr5D	513307239	513310692	3453	False	3064.600000	6045	99.285500	1	3572	2	chr5D.!!$F3	3571
4	TraesCS5B01G338700	chr5D	433682225	433685620	3395	True	2860.350000	5642	97.282000	1	3572	2	chr5D.!!$R2	3571
5	TraesCS5B01G338700	chr5D	431779950	431783558	3608	False	2002.066667	5275	97.276000	1	3572	3	chr5D.!!$F2	3571
6	TraesCS5B01G338700	chr5A	546768174	546771866	3692	True	1285.650000	4711	93.691500	1	3525	4	chr5A.!!$R1	3524
7	TraesCS5B01G338700	chr2B	41137071	41141396	4325	False	605.266667	1511	86.796333	919	2819	3	chr2B.!!$F2	1900
8	TraesCS5B01G338700	chr2A	27951922	27964109	12187	False	673.283333	1469	86.852833	13	2680	6	chr2A.!!$F1	2667
9	TraesCS5B01G338700	chr2D	25346562	25349284	2722	False	546.266667	1074	88.473667	13	2735	3	chr2D.!!$F2	2722
10	TraesCS5B01G338700	chr2D	25338482	25340729	2247	False	437.975000	1253	89.129000	627	2738	4	chr2D.!!$F1	2111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
58	3747	0.032813	ATTACTCCCTCCGTCCGGAA	60.033	55.0	5.23	44.66	4.30	F
63	3752	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.0	5.23	44.66	2.12	F
145	3834	0.098376	CCTTCGACGAGTACTTCCGG	59.902	60.0	8.62	0.00	5.14	F
147	3836	0.798776	TTCGACGAGTACTTCCGGAC	59.201	55.0	1.83	0.00	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1955	6939	0.038435	CGCCATTTGTTGTGCCATCA	60.038	50.000	0.00	3.07	R
2369	7387	1.818363	CTGCTGCTCATGCCGACAT	60.818	57.895	38.71	3.06	R
2495	7516	4.558226	ATGTTGCACTTCCAGTCATCTA	57.442	40.909	0.00	1.98	R
3016	10753	1.064505	CATGTATTGGCTGCGGAAGTG	59.935	52.381	0.00	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	3732	1.201921	CGTGGCAACTCAAGCGATTAC	60.202	52.381	0.00	0.00	37.61	1.89
44	3733	2.076863	GTGGCAACTCAAGCGATTACT	58.923	47.619	0.00	0.00	37.61	2.24
45	3734	2.094417	GTGGCAACTCAAGCGATTACTC	59.906	50.000	0.00	0.00	37.61	2.59
46	3735	1.666189	GGCAACTCAAGCGATTACTCC	59.334	52.381	0.00	0.00	0.00	3.85
47	3736	1.666189	GCAACTCAAGCGATTACTCCC	59.334	52.381	0.00	0.00	0.00	4.30
48	3737	2.678190	GCAACTCAAGCGATTACTCCCT	60.678	50.000	0.00	0.00	0.00	4.20
49	3738	3.190874	CAACTCAAGCGATTACTCCCTC	58.809	50.000	0.00	0.00	0.00	4.30
50	3739	1.757699	ACTCAAGCGATTACTCCCTCC	59.242	52.381	0.00	0.00	0.00	4.30
51	3740	0.744874	TCAAGCGATTACTCCCTCCG	59.255	55.000	0.00	0.00	0.00	4.63
52	3741	0.460311	CAAGCGATTACTCCCTCCGT	59.540	55.000	0.00	0.00	0.00	4.69
53	3742	0.745468	AAGCGATTACTCCCTCCGTC	59.255	55.000	0.00	0.00	0.00	4.79
54	3743	1.108132	AGCGATTACTCCCTCCGTCC	61.108	60.000	0.00	0.00	0.00	4.79
55	3744	1.653115	CGATTACTCCCTCCGTCCG	59.347	63.158	0.00	0.00	0.00	4.79
56	3745	1.793134	CGATTACTCCCTCCGTCCGG	61.793	65.000	0.00	0.00	0.00	5.14
57	3746	0.466922	GATTACTCCCTCCGTCCGGA	60.467	60.000	0.00	0.00	42.90	5.14
58	3747	0.032813	ATTACTCCCTCCGTCCGGAA	60.033	55.000	5.23	0.00	44.66	4.30
59	3748	0.251742	TTACTCCCTCCGTCCGGAAA	60.252	55.000	5.23	0.00	44.66	3.13
60	3749	0.032813	TACTCCCTCCGTCCGGAAAT	60.033	55.000	5.23	0.00	44.66	2.17
61	3750	0.032813	ACTCCCTCCGTCCGGAAATA	60.033	55.000	5.23	0.00	44.66	1.40
62	3751	0.388294	CTCCCTCCGTCCGGAAATAC	59.612	60.000	5.23	0.00	44.66	1.89
63	3752	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.000	5.23	0.00	44.66	2.12
64	3753	0.828677	CCCTCCGTCCGGAAATACTT	59.171	55.000	5.23	0.00	44.66	2.24
65	3754	1.472728	CCCTCCGTCCGGAAATACTTG	60.473	57.143	5.23	0.00	44.66	3.16
66	3755	1.206371	CCTCCGTCCGGAAATACTTGT	59.794	52.381	5.23	0.00	44.66	3.16
67	3756	2.537401	CTCCGTCCGGAAATACTTGTC	58.463	52.381	5.23	0.00	44.66	3.18
68	3757	1.135315	TCCGTCCGGAAATACTTGTCG	60.135	52.381	5.23	1.25	42.05	4.35
69	3758	1.274596	CGTCCGGAAATACTTGTCGG	58.725	55.000	5.23	0.00	41.80	4.79
70	3759	1.135315	CGTCCGGAAATACTTGTCGGA	60.135	52.381	5.23	0.00	46.06	4.55
71	3760	2.953466	TCCGGAAATACTTGTCGGAG	57.047	50.000	0.00	0.00	43.84	4.63
72	3761	2.449464	TCCGGAAATACTTGTCGGAGA	58.551	47.619	0.00	0.00	43.84	3.71
73	3762	2.827322	TCCGGAAATACTTGTCGGAGAA	59.173	45.455	0.00	0.00	43.84	2.87
74	3763	3.258872	TCCGGAAATACTTGTCGGAGAAA	59.741	43.478	0.00	0.00	43.84	2.52
75	3764	4.081309	TCCGGAAATACTTGTCGGAGAAAT	60.081	41.667	0.00	0.00	43.84	2.17
76	3765	4.034048	CCGGAAATACTTGTCGGAGAAATG	59.966	45.833	0.00	0.00	42.94	2.32
77	3766	4.494199	CGGAAATACTTGTCGGAGAAATGC	60.494	45.833	0.00	0.00	39.69	3.56
78	3767	4.636206	GGAAATACTTGTCGGAGAAATGCT	59.364	41.667	0.00	0.00	39.69	3.79
79	3768	5.447818	GGAAATACTTGTCGGAGAAATGCTG	60.448	44.000	0.00	0.00	39.69	4.41
80	3769	2.839486	ACTTGTCGGAGAAATGCTGA	57.161	45.000	0.00	0.00	39.69	4.26
81	3770	3.126001	ACTTGTCGGAGAAATGCTGAA	57.874	42.857	0.00	0.00	39.69	3.02
82	3771	3.476552	ACTTGTCGGAGAAATGCTGAAA	58.523	40.909	0.00	0.00	39.69	2.69
83	3772	3.882888	ACTTGTCGGAGAAATGCTGAAAA	59.117	39.130	0.00	0.00	39.69	2.29
84	3773	4.338118	ACTTGTCGGAGAAATGCTGAAAAA	59.662	37.500	0.00	0.00	39.69	1.94
85	3774	5.010012	ACTTGTCGGAGAAATGCTGAAAAAT	59.990	36.000	0.00	0.00	39.69	1.82
86	3775	4.797471	TGTCGGAGAAATGCTGAAAAATG	58.203	39.130	0.00	0.00	39.69	2.32
87	3776	4.518590	TGTCGGAGAAATGCTGAAAAATGA	59.481	37.500	0.00	0.00	39.69	2.57
88	3777	5.009510	TGTCGGAGAAATGCTGAAAAATGAA	59.990	36.000	0.00	0.00	39.69	2.57
89	3778	6.095377	GTCGGAGAAATGCTGAAAAATGAAT	58.905	36.000	0.00	0.00	39.69	2.57
90	3779	6.034256	GTCGGAGAAATGCTGAAAAATGAATG	59.966	38.462	0.00	0.00	39.69	2.67
91	3780	5.865552	CGGAGAAATGCTGAAAAATGAATGT	59.134	36.000	0.00	0.00	0.00	2.71
92	3781	7.028962	CGGAGAAATGCTGAAAAATGAATGTA	58.971	34.615	0.00	0.00	0.00	2.29
93	3782	7.703621	CGGAGAAATGCTGAAAAATGAATGTAT	59.296	33.333	0.00	0.00	0.00	2.29
94	3783	9.028185	GGAGAAATGCTGAAAAATGAATGTATC	57.972	33.333	0.00	0.00	0.00	2.24
95	3784	9.798994	GAGAAATGCTGAAAAATGAATGTATCT	57.201	29.630	0.00	0.00	0.00	1.98
131	3820	6.929625	ACATCTAGATACATCCATTCCTTCG	58.070	40.000	4.54	0.00	0.00	3.79
132	3821	6.721668	ACATCTAGATACATCCATTCCTTCGA	59.278	38.462	4.54	0.00	0.00	3.71
133	3822	6.576662	TCTAGATACATCCATTCCTTCGAC	57.423	41.667	0.00	0.00	0.00	4.20
134	3823	4.244425	AGATACATCCATTCCTTCGACG	57.756	45.455	0.00	0.00	0.00	5.12
135	3824	3.889538	AGATACATCCATTCCTTCGACGA	59.110	43.478	0.00	0.00	0.00	4.20
136	3825	2.586258	ACATCCATTCCTTCGACGAG	57.414	50.000	0.00	0.00	0.00	4.18
137	3826	1.825474	ACATCCATTCCTTCGACGAGT	59.175	47.619	0.00	0.00	0.00	4.18
138	3827	3.021695	ACATCCATTCCTTCGACGAGTA	58.978	45.455	0.00	0.00	0.00	2.59
139	3828	3.181489	ACATCCATTCCTTCGACGAGTAC	60.181	47.826	0.00	0.00	0.00	2.73
140	3829	2.719739	TCCATTCCTTCGACGAGTACT	58.280	47.619	0.00	0.00	0.00	2.73
141	3830	3.087031	TCCATTCCTTCGACGAGTACTT	58.913	45.455	0.00	0.00	0.00	2.24
142	3831	3.128242	TCCATTCCTTCGACGAGTACTTC	59.872	47.826	0.00	0.00	0.00	3.01
143	3832	3.436496	CATTCCTTCGACGAGTACTTCC	58.564	50.000	0.00	0.00	0.00	3.46
144	3833	1.081892	TCCTTCGACGAGTACTTCCG	58.918	55.000	0.00	0.00	0.00	4.30
145	3834	0.098376	CCTTCGACGAGTACTTCCGG	59.902	60.000	8.62	0.00	0.00	5.14
146	3835	1.081892	CTTCGACGAGTACTTCCGGA	58.918	55.000	0.00	0.00	0.00	5.14
147	3836	0.798776	TTCGACGAGTACTTCCGGAC	59.201	55.000	1.83	0.00	0.00	4.79
148	3837	1.059994	CGACGAGTACTTCCGGACG	59.940	63.158	1.83	4.48	0.00	4.79
149	3838	1.427020	GACGAGTACTTCCGGACGG	59.573	63.158	13.17	3.96	0.00	4.79
150	3839	1.003355	ACGAGTACTTCCGGACGGA	60.003	57.895	13.17	9.76	43.52	4.69
151	3840	1.023513	ACGAGTACTTCCGGACGGAG	61.024	60.000	13.17	6.49	46.06	4.63
152	3841	1.712977	CGAGTACTTCCGGACGGAGG	61.713	65.000	19.51	19.51	46.06	4.30
153	3842	1.379576	AGTACTTCCGGACGGAGGG	60.380	63.158	23.78	17.53	46.06	4.30
154	3843	1.379044	GTACTTCCGGACGGAGGGA	60.379	63.158	23.78	15.14	46.06	4.20
155	3844	1.077212	TACTTCCGGACGGAGGGAG	60.077	63.158	23.78	16.33	46.06	4.30
795	5517	9.109393	GTTGAGATACTAATCCAGCATTAAACA	57.891	33.333	0.00	0.00	31.98	2.83
821	5631	1.196354	CGGCAGCTTTCAAACAGAGAG	59.804	52.381	0.00	0.00	0.00	3.20
984	5888	4.498241	CATTCACTACTGCACAAGCTAGA	58.502	43.478	0.00	0.00	42.74	2.43
1556	6530	1.617357	GGTGAGACGGACTGGTACTTT	59.383	52.381	0.00	0.00	0.00	2.66
1976	6960	2.738139	GGCACAACAAATGGCGCC	60.738	61.111	22.73	22.73	42.33	6.53
2369	7387	4.637534	GGCTGATTCTTCTGCAGATGTAAA	59.362	41.667	24.31	15.22	45.69	2.01
2495	7516	5.407407	TTCGATTTAGGAGCAGACTCTTT	57.593	39.130	0.00	0.00	42.98	2.52
3012	10749	8.691661	AATCCGCAAATACCAACTAAGAATAT	57.308	30.769	0.00	0.00	0.00	1.28
3013	10750	7.724305	TCCGCAAATACCAACTAAGAATATC	57.276	36.000	0.00	0.00	0.00	1.63
3014	10751	6.708949	TCCGCAAATACCAACTAAGAATATCC	59.291	38.462	0.00	0.00	0.00	2.59
3015	10752	6.347402	CCGCAAATACCAACTAAGAATATCCG	60.347	42.308	0.00	0.00	0.00	4.18
3016	10753	6.371389	GCAAATACCAACTAAGAATATCCGC	58.629	40.000	0.00	0.00	0.00	5.54
3017	10754	6.017440	GCAAATACCAACTAAGAATATCCGCA	60.017	38.462	0.00	0.00	0.00	5.69
3018	10755	7.352739	CAAATACCAACTAAGAATATCCGCAC	58.647	38.462	0.00	0.00	0.00	5.34
3019	10756	4.755266	ACCAACTAAGAATATCCGCACT	57.245	40.909	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	3732	0.388294	GTATTTCCGGACGGAGGGAG	59.612	60.000	13.64	0.00	46.06	4.30
44	3733	0.032813	AGTATTTCCGGACGGAGGGA	60.033	55.000	13.64	4.95	46.06	4.20
45	3734	0.828677	AAGTATTTCCGGACGGAGGG	59.171	55.000	13.64	0.00	46.06	4.30
46	3735	1.206371	ACAAGTATTTCCGGACGGAGG	59.794	52.381	13.64	0.00	46.06	4.30
47	3736	2.537401	GACAAGTATTTCCGGACGGAG	58.463	52.381	13.64	3.15	46.06	4.63
48	3737	1.135315	CGACAAGTATTTCCGGACGGA	60.135	52.381	1.83	9.76	43.52	4.69
49	3738	1.274596	CGACAAGTATTTCCGGACGG	58.725	55.000	1.83	3.96	0.00	4.79
50	3739	1.135315	TCCGACAAGTATTTCCGGACG	60.135	52.381	1.83	0.00	43.47	4.79
51	3740	2.165030	TCTCCGACAAGTATTTCCGGAC	59.835	50.000	1.83	0.00	43.47	4.79
52	3741	2.449464	TCTCCGACAAGTATTTCCGGA	58.551	47.619	0.00	0.00	45.74	5.14
53	3742	2.953466	TCTCCGACAAGTATTTCCGG	57.047	50.000	0.00	0.00	41.36	5.14
54	3743	4.494199	GCATTTCTCCGACAAGTATTTCCG	60.494	45.833	0.00	0.00	0.00	4.30
55	3744	4.636206	AGCATTTCTCCGACAAGTATTTCC	59.364	41.667	0.00	0.00	0.00	3.13
56	3745	5.351465	TCAGCATTTCTCCGACAAGTATTTC	59.649	40.000	0.00	0.00	0.00	2.17
57	3746	5.245531	TCAGCATTTCTCCGACAAGTATTT	58.754	37.500	0.00	0.00	0.00	1.40
58	3747	4.832248	TCAGCATTTCTCCGACAAGTATT	58.168	39.130	0.00	0.00	0.00	1.89
59	3748	4.471904	TCAGCATTTCTCCGACAAGTAT	57.528	40.909	0.00	0.00	0.00	2.12
60	3749	3.953712	TCAGCATTTCTCCGACAAGTA	57.046	42.857	0.00	0.00	0.00	2.24
61	3750	2.839486	TCAGCATTTCTCCGACAAGT	57.161	45.000	0.00	0.00	0.00	3.16
62	3751	4.488126	TTTTCAGCATTTCTCCGACAAG	57.512	40.909	0.00	0.00	0.00	3.16
63	3752	4.909696	TTTTTCAGCATTTCTCCGACAA	57.090	36.364	0.00	0.00	0.00	3.18
64	3753	4.518590	TCATTTTTCAGCATTTCTCCGACA	59.481	37.500	0.00	0.00	0.00	4.35
65	3754	5.046910	TCATTTTTCAGCATTTCTCCGAC	57.953	39.130	0.00	0.00	0.00	4.79
66	3755	5.703978	TTCATTTTTCAGCATTTCTCCGA	57.296	34.783	0.00	0.00	0.00	4.55
67	3756	5.865552	ACATTCATTTTTCAGCATTTCTCCG	59.134	36.000	0.00	0.00	0.00	4.63
68	3757	8.937634	ATACATTCATTTTTCAGCATTTCTCC	57.062	30.769	0.00	0.00	0.00	3.71
69	3758	9.798994	AGATACATTCATTTTTCAGCATTTCTC	57.201	29.630	0.00	0.00	0.00	2.87
105	3794	8.690884	CGAAGGAATGGATGTATCTAGATGTAT	58.309	37.037	15.79	9.11	0.00	2.29
106	3795	7.888546	TCGAAGGAATGGATGTATCTAGATGTA	59.111	37.037	15.79	4.44	0.00	2.29
107	3796	6.721668	TCGAAGGAATGGATGTATCTAGATGT	59.278	38.462	15.79	1.25	0.00	3.06
108	3797	7.032580	GTCGAAGGAATGGATGTATCTAGATG	58.967	42.308	15.79	0.00	0.00	2.90
109	3798	6.127869	CGTCGAAGGAATGGATGTATCTAGAT	60.128	42.308	10.73	10.73	0.00	1.98
110	3799	5.181433	CGTCGAAGGAATGGATGTATCTAGA	59.819	44.000	0.00	0.00	0.00	2.43
111	3800	5.181433	TCGTCGAAGGAATGGATGTATCTAG	59.819	44.000	0.00	0.00	0.00	2.43
112	3801	5.067954	TCGTCGAAGGAATGGATGTATCTA	58.932	41.667	0.00	0.00	0.00	1.98
113	3802	3.889538	TCGTCGAAGGAATGGATGTATCT	59.110	43.478	0.00	0.00	0.00	1.98
114	3803	4.230657	CTCGTCGAAGGAATGGATGTATC	58.769	47.826	0.00	0.00	0.00	2.24
115	3804	3.637229	ACTCGTCGAAGGAATGGATGTAT	59.363	43.478	0.00	0.00	0.00	2.29
116	3805	3.021695	ACTCGTCGAAGGAATGGATGTA	58.978	45.455	0.00	0.00	0.00	2.29
117	3806	1.825474	ACTCGTCGAAGGAATGGATGT	59.175	47.619	0.00	0.00	0.00	3.06
118	3807	2.586258	ACTCGTCGAAGGAATGGATG	57.414	50.000	0.00	0.00	0.00	3.51
119	3808	3.288964	AGTACTCGTCGAAGGAATGGAT	58.711	45.455	0.00	0.00	0.00	3.41
120	3809	2.719739	AGTACTCGTCGAAGGAATGGA	58.280	47.619	0.00	0.00	0.00	3.41
121	3810	3.436496	GAAGTACTCGTCGAAGGAATGG	58.564	50.000	0.00	0.00	0.00	3.16
122	3811	3.436496	GGAAGTACTCGTCGAAGGAATG	58.564	50.000	0.00	0.00	0.00	2.67
123	3812	2.097142	CGGAAGTACTCGTCGAAGGAAT	59.903	50.000	0.00	0.00	0.00	3.01
124	3813	1.466167	CGGAAGTACTCGTCGAAGGAA	59.534	52.381	0.00	0.00	0.00	3.36
125	3814	1.081892	CGGAAGTACTCGTCGAAGGA	58.918	55.000	0.00	0.00	0.00	3.36
126	3815	0.098376	CCGGAAGTACTCGTCGAAGG	59.902	60.000	0.00	2.39	0.00	3.46
127	3816	1.081892	TCCGGAAGTACTCGTCGAAG	58.918	55.000	0.00	0.00	0.00	3.79
128	3817	0.798776	GTCCGGAAGTACTCGTCGAA	59.201	55.000	5.23	0.00	0.00	3.71
129	3818	1.354337	CGTCCGGAAGTACTCGTCGA	61.354	60.000	5.23	0.00	0.00	4.20
130	3819	1.059994	CGTCCGGAAGTACTCGTCG	59.940	63.158	5.23	0.00	0.00	5.12
131	3820	1.021390	TCCGTCCGGAAGTACTCGTC	61.021	60.000	16.46	0.00	42.05	4.20
132	3821	1.003355	TCCGTCCGGAAGTACTCGT	60.003	57.895	16.46	0.00	42.05	4.18
133	3822	1.712977	CCTCCGTCCGGAAGTACTCG	61.713	65.000	16.46	9.67	44.66	4.18
134	3823	1.382692	CCCTCCGTCCGGAAGTACTC	61.383	65.000	16.46	0.00	44.66	2.59
135	3824	1.379576	CCCTCCGTCCGGAAGTACT	60.380	63.158	16.46	0.00	44.66	2.73
136	3825	1.379044	TCCCTCCGTCCGGAAGTAC	60.379	63.158	16.46	0.00	44.66	2.73
137	3826	1.077212	CTCCCTCCGTCCGGAAGTA	60.077	63.158	16.46	0.00	44.66	2.24
138	3827	1.856539	TACTCCCTCCGTCCGGAAGT	61.857	60.000	16.46	11.87	44.66	3.01
139	3828	1.077212	TACTCCCTCCGTCCGGAAG	60.077	63.158	5.23	8.49	44.66	3.46
140	3829	1.379044	GTACTCCCTCCGTCCGGAA	60.379	63.158	5.23	0.00	44.66	4.30
141	3830	0.982852	TAGTACTCCCTCCGTCCGGA	60.983	60.000	0.00	0.00	42.90	5.14
142	3831	0.107017	TTAGTACTCCCTCCGTCCGG	60.107	60.000	0.00	0.00	0.00	5.14
143	3832	1.755179	TTTAGTACTCCCTCCGTCCG	58.245	55.000	0.00	0.00	0.00	4.79
144	3833	4.750021	AATTTTAGTACTCCCTCCGTCC	57.250	45.455	0.00	0.00	0.00	4.79
145	3834	8.728337	AAATAAATTTTAGTACTCCCTCCGTC	57.272	34.615	0.00	0.00	0.00	4.79
146	3835	9.828039	CTAAATAAATTTTAGTACTCCCTCCGT	57.172	33.333	0.00	0.00	0.00	4.69
147	3836	9.828039	ACTAAATAAATTTTAGTACTCCCTCCG	57.172	33.333	0.00	0.00	41.77	4.63
795	5517	0.313672	TTTGAAAGCTGCCGCGATTT	59.686	45.000	8.23	0.00	42.32	2.17
984	5888	4.344104	CCTCCATTGTAATCCCACAAAGT	58.656	43.478	0.00	0.00	41.50	2.66
1556	6530	2.598787	CCGGTCCCTTGGGCAGTAA	61.599	63.158	0.00	0.00	0.00	2.24
1955	6939	0.038435	CGCCATTTGTTGTGCCATCA	60.038	50.000	0.00	0.00	0.00	3.07
2369	7387	1.818363	CTGCTGCTCATGCCGACAT	60.818	57.895	0.00	0.00	38.71	3.06
2495	7516	4.558226	ATGTTGCACTTCCAGTCATCTA	57.442	40.909	0.00	0.00	0.00	1.98
3014	10751	2.106074	TATTGGCTGCGGAAGTGCG	61.106	57.895	0.00	0.00	37.81	5.34
3015	10752	1.305219	TGTATTGGCTGCGGAAGTGC	61.305	55.000	0.00	0.00	0.00	4.40
3016	10753	1.064505	CATGTATTGGCTGCGGAAGTG	59.935	52.381	0.00	0.00	0.00	3.16
3017	10754	1.382522	CATGTATTGGCTGCGGAAGT	58.617	50.000	0.00	0.00	0.00	3.01
3018	10755	0.664761	CCATGTATTGGCTGCGGAAG	59.335	55.000	0.00	0.00	39.09	3.46
3019	10756	2.792500	CCATGTATTGGCTGCGGAA	58.208	52.632	0.00	0.00	39.09	4.30

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.