Multiple sequence alignment - TraesCS5B01G338600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G338600 chr5B 100.000 2329 0 0 1 2329 522498197 522500525 0.000000e+00 4301
1 TraesCS5B01G338600 chr5B 91.286 700 36 8 942 1635 521241486 521240806 0.000000e+00 931
2 TraesCS5B01G338600 chr5B 89.559 431 43 2 42 470 521254754 521254324 1.570000e-151 545
3 TraesCS5B01G338600 chr5B 97.358 265 6 1 503 767 461999764 461999501 1.270000e-122 449
4 TraesCS5B01G338600 chr5B 97.004 267 7 1 502 767 174521740 174522006 4.570000e-122 448
5 TraesCS5B01G338600 chr5B 94.619 223 12 0 2107 2329 521240772 521240550 1.710000e-91 346
6 TraesCS5B01G338600 chr5B 82.250 400 66 5 42 436 546834788 546834389 7.970000e-90 340
7 TraesCS5B01G338600 chr5B 79.661 472 75 12 49 503 403189104 403189571 1.040000e-83 320
8 TraesCS5B01G338600 chr5A 90.081 1613 98 22 764 2329 546884746 546886343 0.000000e+00 2036
9 TraesCS5B01G338600 chr5A 89.631 839 64 13 764 1590 546723073 546722246 0.000000e+00 1046
10 TraesCS5B01G338600 chr5A 92.913 635 37 8 1585 2212 546718689 546718056 0.000000e+00 917
11 TraesCS5B01G338600 chr5A 90.343 466 44 1 42 506 546884286 546884751 5.500000e-171 610
12 TraesCS5B01G338600 chr5A 89.270 466 49 1 42 506 546723533 546723068 1.200000e-162 582
13 TraesCS5B01G338600 chr5A 93.103 116 7 1 2215 2329 546715120 546715005 3.980000e-38 169
14 TraesCS5B01G338600 chr5D 91.484 1456 74 21 888 2329 431627539 431626120 0.000000e+00 1956
15 TraesCS5B01G338600 chr5D 89.327 431 44 2 42 470 431640070 431639640 7.320000e-150 540
16 TraesCS5B01G338600 chr5D 84.466 206 28 4 1704 1908 47515657 47515859 1.410000e-47 200
17 TraesCS5B01G338600 chr7B 97.736 265 6 0 504 768 108487017 108486753 7.590000e-125 457
18 TraesCS5B01G338600 chr7B 97.004 267 5 2 502 767 221360460 221360196 1.640000e-121 446
19 TraesCS5B01G338600 chr7B 78.500 400 62 13 148 529 748308216 748308609 8.320000e-60 241
20 TraesCS5B01G338600 chr4B 97.744 266 5 1 503 768 211574237 211573973 7.590000e-125 457
21 TraesCS5B01G338600 chr4B 80.503 477 77 10 43 506 115941824 115942297 3.680000e-93 351
22 TraesCS5B01G338600 chr1B 97.378 267 5 2 504 768 328855021 328854755 9.810000e-124 453
23 TraesCS5B01G338600 chr1B 96.310 271 10 0 497 767 192667179 192667449 1.640000e-121 446
24 TraesCS5B01G338600 chr1B 89.655 232 23 1 1703 1934 299944167 299943937 6.290000e-76 294
25 TraesCS5B01G338600 chr4A 96.667 270 9 0 504 773 725711131 725710862 1.270000e-122 449
26 TraesCS5B01G338600 chr4A 82.469 405 55 12 42 439 623328955 623329350 7.970000e-90 340
27 TraesCS5B01G338600 chr4A 83.700 227 28 5 1704 1929 677953689 677953907 3.030000e-49 206
28 TraesCS5B01G338600 chr2B 97.004 267 6 2 502 767 456526103 456526368 4.570000e-122 448
29 TraesCS5B01G338600 chr2A 80.720 472 66 16 53 506 398458877 398458413 6.160000e-91 344
30 TraesCS5B01G338600 chr2A 84.091 132 20 1 766 896 126642894 126643025 2.430000e-25 126
31 TraesCS5B01G338600 chr1A 91.379 232 19 1 1703 1934 259970193 259969963 1.340000e-82 316
32 TraesCS5B01G338600 chr6B 78.587 467 72 15 53 506 143522010 143521559 1.360000e-72 283
33 TraesCS5B01G338600 chr1D 88.793 232 14 4 1703 1934 204224161 204223942 8.200000e-70 274
34 TraesCS5B01G338600 chr1D 84.848 132 17 2 764 894 119297012 119297141 1.880000e-26 130
35 TraesCS5B01G338600 chr6D 77.113 485 82 17 43 506 445005582 445005106 1.070000e-63 254
36 TraesCS5B01G338600 chr3D 84.937 239 31 5 1703 1939 390661657 390661892 1.080000e-58 237
37 TraesCS5B01G338600 chr2D 76.676 373 61 17 147 506 322865766 322865407 1.420000e-42 183
38 TraesCS5B01G338600 chr2D 87.719 114 12 2 764 876 322865412 322865300 5.220000e-27 132
39 TraesCS5B01G338600 chr3A 74.614 453 78 22 66 506 20839785 20839358 5.150000e-37 165
40 TraesCS5B01G338600 chrUn 83.088 136 21 2 764 898 3527195 3527061 3.140000e-24 122
41 TraesCS5B01G338600 chrUn 83.459 133 20 2 764 895 334664499 334664630 3.140000e-24 122
42 TraesCS5B01G338600 chrUn 83.459 133 20 2 764 895 419389017 419389148 3.140000e-24 122
43 TraesCS5B01G338600 chr7A 83.088 136 21 2 764 897 297923630 297923495 3.140000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G338600 chr5B 522498197 522500525 2328 False 4301.0 4301 100.00000 1 2329 1 chr5B.!!$F3 2328
1 TraesCS5B01G338600 chr5B 521240550 521241486 936 True 638.5 931 92.95250 942 2329 2 chr5B.!!$R4 1387
2 TraesCS5B01G338600 chr5A 546884286 546886343 2057 False 1323.0 2036 90.21200 42 2329 2 chr5A.!!$F1 2287
3 TraesCS5B01G338600 chr5A 546715005 546723533 8528 True 678.5 1046 91.22925 42 2329 4 chr5A.!!$R1 2287
4 TraesCS5B01G338600 chr5D 431626120 431627539 1419 True 1956.0 1956 91.48400 888 2329 1 chr5D.!!$R1 1441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 320 0.109319 CTTTGGCCCGGTCAAAATCG 60.109 55.0 17.72 3.46 36.68 3.34 F
700 702 0.169230 AAACGAGTGTTGCAACGCAA 59.831 45.0 36.74 14.38 46.80 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1238 1255 0.616395 TCATGTCCGGGTTCTGGCTA 60.616 55.0 0.0 0.0 0.0 3.93 R
1680 5326 2.702898 TGATGGACATGTTTTGCACG 57.297 45.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.691049 CCTGGTAGTGTGTTGTTGTTG 57.309 47.619 0.00 0.00 0.00 3.33
21 22 3.013921 CCTGGTAGTGTGTTGTTGTTGT 58.986 45.455 0.00 0.00 0.00 3.32
22 23 3.442273 CCTGGTAGTGTGTTGTTGTTGTT 59.558 43.478 0.00 0.00 0.00 2.83
23 24 4.411327 CTGGTAGTGTGTTGTTGTTGTTG 58.589 43.478 0.00 0.00 0.00 3.33
24 25 3.821600 TGGTAGTGTGTTGTTGTTGTTGT 59.178 39.130 0.00 0.00 0.00 3.32
25 26 4.278669 TGGTAGTGTGTTGTTGTTGTTGTT 59.721 37.500 0.00 0.00 0.00 2.83
26 27 4.619336 GGTAGTGTGTTGTTGTTGTTGTTG 59.381 41.667 0.00 0.00 0.00 3.33
27 28 4.314740 AGTGTGTTGTTGTTGTTGTTGT 57.685 36.364 0.00 0.00 0.00 3.32
28 29 4.688021 AGTGTGTTGTTGTTGTTGTTGTT 58.312 34.783 0.00 0.00 0.00 2.83
29 30 4.505922 AGTGTGTTGTTGTTGTTGTTGTTG 59.494 37.500 0.00 0.00 0.00 3.33
30 31 4.268884 GTGTGTTGTTGTTGTTGTTGTTGT 59.731 37.500 0.00 0.00 0.00 3.32
31 32 4.870426 TGTGTTGTTGTTGTTGTTGTTGTT 59.130 33.333 0.00 0.00 0.00 2.83
32 33 5.193936 GTGTTGTTGTTGTTGTTGTTGTTG 58.806 37.500 0.00 0.00 0.00 3.33
33 34 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
34 35 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
35 36 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
36 37 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
37 38 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
38 39 6.533723 TGTTGTTGTTGTTGTTGTTGTTGTTA 59.466 30.769 0.00 0.00 0.00 2.41
39 40 7.224753 TGTTGTTGTTGTTGTTGTTGTTGTTAT 59.775 29.630 0.00 0.00 0.00 1.89
40 41 7.715265 TGTTGTTGTTGTTGTTGTTGTTATT 57.285 28.000 0.00 0.00 0.00 1.40
70 71 1.561542 GTGGGGAGATGATGGAGTGTT 59.438 52.381 0.00 0.00 0.00 3.32
106 107 8.934023 ATTTATAATACGGTGATTTGATGGGT 57.066 30.769 0.00 0.00 0.00 4.51
145 147 3.938963 AGTGTTATCCGCTAACCAATGTG 59.061 43.478 4.33 0.00 39.23 3.21
200 202 6.223852 ACTGCATGTACTATATTGGTGCTAC 58.776 40.000 0.00 0.00 32.67 3.58
205 207 7.542477 GCATGTACTATATTGGTGCTACAGTAG 59.458 40.741 2.85 2.85 0.00 2.57
233 235 4.081087 TGGTGACACCTATTTTCTCTAGGC 60.081 45.833 24.81 0.00 39.57 3.93
300 302 6.460781 TGCTGCTGATTGATTTGAAAAATCT 58.539 32.000 12.53 0.00 32.63 2.40
318 320 0.109319 CTTTGGCCCGGTCAAAATCG 60.109 55.000 17.72 3.46 36.68 3.34
328 330 3.976306 CCGGTCAAAATCGTAAACCAAAC 59.024 43.478 0.00 0.00 0.00 2.93
343 345 8.426251 CGTAAACCAAACCCAAAATTAAATACG 58.574 33.333 0.00 0.00 0.00 3.06
346 348 6.151004 ACCAAACCCAAAATTAAATACGTCG 58.849 36.000 0.00 0.00 0.00 5.12
418 420 3.503998 GGAGGGCCCTTGAGAAATC 57.496 57.895 29.39 10.68 0.00 2.17
428 430 1.832719 TTGAGAAATCGTGGGCCCGA 61.833 55.000 19.37 17.34 41.73 5.14
436 438 0.322997 TCGTGGGCCCGATCAAAATT 60.323 50.000 19.37 0.00 30.63 1.82
474 476 7.279615 TGAAGACCTCAATTAGTTCTGAAACA 58.720 34.615 0.00 0.00 37.88 2.83
509 511 7.897864 AGAAAGCATGGTGTATAGTATACTCC 58.102 38.462 25.07 25.07 0.00 3.85
510 512 6.607004 AAGCATGGTGTATAGTATACTCCC 57.393 41.667 27.19 21.82 31.92 4.30
511 513 5.905088 AGCATGGTGTATAGTATACTCCCT 58.095 41.667 27.19 19.64 31.92 4.20
512 514 5.952947 AGCATGGTGTATAGTATACTCCCTC 59.047 44.000 27.19 19.21 31.92 4.30
513 515 5.127356 GCATGGTGTATAGTATACTCCCTCC 59.873 48.000 27.19 17.90 31.92 4.30
514 516 4.914983 TGGTGTATAGTATACTCCCTCCG 58.085 47.826 27.19 0.00 31.92 4.63
515 517 4.352001 TGGTGTATAGTATACTCCCTCCGT 59.648 45.833 27.19 0.00 31.92 4.69
516 518 5.163055 TGGTGTATAGTATACTCCCTCCGTT 60.163 44.000 27.19 0.00 31.92 4.44
517 519 5.414144 GGTGTATAGTATACTCCCTCCGTTC 59.586 48.000 22.79 3.79 0.00 3.95
518 520 5.414144 GTGTATAGTATACTCCCTCCGTTCC 59.586 48.000 18.80 0.00 0.00 3.62
519 521 5.311649 TGTATAGTATACTCCCTCCGTTCCT 59.688 44.000 18.80 0.00 0.00 3.36
520 522 6.501805 TGTATAGTATACTCCCTCCGTTCCTA 59.498 42.308 18.80 0.00 0.00 2.94
521 523 4.803329 AGTATACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
522 524 5.134725 AGTATACTCCCTCCGTTCCTAAA 57.865 43.478 0.00 0.00 0.00 1.85
523 525 5.713807 AGTATACTCCCTCCGTTCCTAAAT 58.286 41.667 0.00 0.00 0.00 1.40
524 526 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
525 527 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
526 528 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
527 529 3.705072 ACTCCCTCCGTTCCTAAATGTAG 59.295 47.826 0.00 0.00 0.00 2.74
529 531 2.104281 CCCTCCGTTCCTAAATGTAGGG 59.896 54.545 9.22 0.00 46.34 3.53
530 532 2.770232 CCTCCGTTCCTAAATGTAGGGT 59.230 50.000 9.22 0.00 46.34 4.34
531 533 3.431766 CCTCCGTTCCTAAATGTAGGGTG 60.432 52.174 9.22 0.00 46.34 4.61
532 534 3.175594 TCCGTTCCTAAATGTAGGGTGT 58.824 45.455 9.22 0.00 46.34 4.16
533 535 4.352009 TCCGTTCCTAAATGTAGGGTGTA 58.648 43.478 9.22 0.00 46.34 2.90
534 536 4.964262 TCCGTTCCTAAATGTAGGGTGTAT 59.036 41.667 9.22 0.00 46.34 2.29
535 537 6.135454 TCCGTTCCTAAATGTAGGGTGTATA 58.865 40.000 9.22 0.00 46.34 1.47
536 538 6.266103 TCCGTTCCTAAATGTAGGGTGTATAG 59.734 42.308 9.22 0.00 46.34 1.31
537 539 6.041296 CCGTTCCTAAATGTAGGGTGTATAGT 59.959 42.308 9.22 0.00 46.34 2.12
538 540 7.418254 CCGTTCCTAAATGTAGGGTGTATAGTT 60.418 40.741 9.22 0.00 46.34 2.24
539 541 7.983484 CGTTCCTAAATGTAGGGTGTATAGTTT 59.017 37.037 9.22 0.00 46.34 2.66
540 542 9.676861 GTTCCTAAATGTAGGGTGTATAGTTTT 57.323 33.333 9.22 0.00 46.34 2.43
542 544 9.675464 TCCTAAATGTAGGGTGTATAGTTTTTG 57.325 33.333 9.22 0.00 46.34 2.44
543 545 8.899771 CCTAAATGTAGGGTGTATAGTTTTTGG 58.100 37.037 0.22 0.00 43.07 3.28
544 546 6.769134 AATGTAGGGTGTATAGTTTTTGGC 57.231 37.500 0.00 0.00 0.00 4.52
545 547 5.244189 TGTAGGGTGTATAGTTTTTGGCA 57.756 39.130 0.00 0.00 0.00 4.92
546 548 5.005094 TGTAGGGTGTATAGTTTTTGGCAC 58.995 41.667 0.00 0.00 0.00 5.01
547 549 3.078837 AGGGTGTATAGTTTTTGGCACG 58.921 45.455 0.00 0.00 0.00 5.34
548 550 3.075884 GGGTGTATAGTTTTTGGCACGA 58.924 45.455 0.00 0.00 0.00 4.35
549 551 3.502979 GGGTGTATAGTTTTTGGCACGAA 59.497 43.478 0.00 0.00 0.00 3.85
550 552 4.023021 GGGTGTATAGTTTTTGGCACGAAA 60.023 41.667 0.00 0.00 0.00 3.46
551 553 5.507650 GGGTGTATAGTTTTTGGCACGAAAA 60.508 40.000 0.00 0.00 0.00 2.29
552 554 6.153756 GGTGTATAGTTTTTGGCACGAAAAT 58.846 36.000 0.84 1.41 0.00 1.82
553 555 6.643360 GGTGTATAGTTTTTGGCACGAAAATT 59.357 34.615 0.84 0.06 0.00 1.82
554 556 7.808856 GGTGTATAGTTTTTGGCACGAAAATTA 59.191 33.333 0.84 2.13 0.00 1.40
555 557 9.182933 GTGTATAGTTTTTGGCACGAAAATTAA 57.817 29.630 0.84 0.00 0.00 1.40
556 558 9.745880 TGTATAGTTTTTGGCACGAAAATTAAA 57.254 25.926 0.84 0.00 0.00 1.52
559 561 7.835634 AGTTTTTGGCACGAAAATTAAAGAA 57.164 28.000 0.84 0.00 0.00 2.52
560 562 7.680982 AGTTTTTGGCACGAAAATTAAAGAAC 58.319 30.769 0.84 0.00 0.00 3.01
561 563 5.874892 TTTGGCACGAAAATTAAAGAACG 57.125 34.783 0.00 0.00 0.00 3.95
562 564 4.555348 TGGCACGAAAATTAAAGAACGT 57.445 36.364 0.00 0.00 34.40 3.99
563 565 5.670149 TGGCACGAAAATTAAAGAACGTA 57.330 34.783 0.00 0.00 32.89 3.57
564 566 5.442402 TGGCACGAAAATTAAAGAACGTAC 58.558 37.500 0.00 0.00 32.89 3.67
565 567 4.546941 GGCACGAAAATTAAAGAACGTACG 59.453 41.667 15.01 15.01 32.89 3.67
566 568 5.132576 GCACGAAAATTAAAGAACGTACGT 58.867 37.500 16.72 16.72 32.89 3.57
567 569 5.055973 GCACGAAAATTAAAGAACGTACGTG 59.944 40.000 23.57 0.00 46.00 4.49
568 570 6.346339 CACGAAAATTAAAGAACGTACGTGA 58.654 36.000 23.57 4.59 46.10 4.35
569 571 6.840292 CACGAAAATTAAAGAACGTACGTGAA 59.160 34.615 23.57 11.48 46.10 3.18
570 572 7.056450 CACGAAAATTAAAGAACGTACGTGAAG 59.944 37.037 23.57 4.51 46.10 3.02
571 573 6.513991 CGAAAATTAAAGAACGTACGTGAAGG 59.486 38.462 23.57 0.00 0.00 3.46
572 574 4.916099 ATTAAAGAACGTACGTGAAGGC 57.084 40.909 23.57 9.29 0.00 4.35
573 575 2.228138 AAAGAACGTACGTGAAGGCA 57.772 45.000 23.57 0.00 0.00 4.75
574 576 2.228138 AAGAACGTACGTGAAGGCAA 57.772 45.000 23.57 0.00 0.00 4.52
575 577 2.228138 AGAACGTACGTGAAGGCAAA 57.772 45.000 23.57 0.00 0.00 3.68
576 578 2.553086 AGAACGTACGTGAAGGCAAAA 58.447 42.857 23.57 0.00 0.00 2.44
577 579 3.135994 AGAACGTACGTGAAGGCAAAAT 58.864 40.909 23.57 0.93 0.00 1.82
578 580 3.562557 AGAACGTACGTGAAGGCAAAATT 59.437 39.130 23.57 0.32 0.00 1.82
579 581 3.974871 ACGTACGTGAAGGCAAAATTT 57.025 38.095 22.14 0.00 0.00 1.82
580 582 3.880610 ACGTACGTGAAGGCAAAATTTC 58.119 40.909 22.14 0.00 0.00 2.17
581 583 3.312973 ACGTACGTGAAGGCAAAATTTCA 59.687 39.130 22.14 0.00 0.00 2.69
582 584 3.662186 CGTACGTGAAGGCAAAATTTCAC 59.338 43.478 7.22 6.51 46.01 3.18
590 592 6.840075 TGAAGGCAAAATTTCACAAGTTTTG 58.160 32.000 10.85 10.85 42.65 2.44
591 593 5.816449 AGGCAAAATTTCACAAGTTTTGG 57.184 34.783 14.90 2.62 41.03 3.28
592 594 4.639755 AGGCAAAATTTCACAAGTTTTGGG 59.360 37.500 14.90 0.00 41.03 4.12
593 595 4.350346 GCAAAATTTCACAAGTTTTGGGC 58.650 39.130 14.90 2.88 41.03 5.36
594 596 4.142513 GCAAAATTTCACAAGTTTTGGGCA 60.143 37.500 14.90 0.00 41.03 5.36
595 597 5.620879 GCAAAATTTCACAAGTTTTGGGCAA 60.621 36.000 14.90 0.00 41.03 4.52
596 598 5.816449 AAATTTCACAAGTTTTGGGCAAG 57.184 34.783 0.00 0.00 32.92 4.01
597 599 3.971245 TTTCACAAGTTTTGGGCAAGT 57.029 38.095 0.00 0.00 32.92 3.16
598 600 3.971245 TTCACAAGTTTTGGGCAAGTT 57.029 38.095 0.00 0.00 32.92 2.66
599 601 3.971245 TCACAAGTTTTGGGCAAGTTT 57.029 38.095 0.00 0.00 32.92 2.66
600 602 5.407407 TTCACAAGTTTTGGGCAAGTTTA 57.593 34.783 0.00 0.00 32.92 2.01
601 603 4.749976 TCACAAGTTTTGGGCAAGTTTAC 58.250 39.130 0.00 0.00 32.92 2.01
602 604 4.220821 TCACAAGTTTTGGGCAAGTTTACA 59.779 37.500 0.00 0.00 32.92 2.41
603 605 4.328712 CACAAGTTTTGGGCAAGTTTACAC 59.671 41.667 0.00 0.00 34.12 2.90
604 606 3.812156 AGTTTTGGGCAAGTTTACACC 57.188 42.857 0.00 0.00 0.00 4.16
605 607 3.371034 AGTTTTGGGCAAGTTTACACCT 58.629 40.909 0.00 0.00 0.00 4.00
606 608 3.132111 AGTTTTGGGCAAGTTTACACCTG 59.868 43.478 0.00 0.00 0.00 4.00
607 609 2.738587 TTGGGCAAGTTTACACCTGA 57.261 45.000 0.00 0.00 0.00 3.86
608 610 1.975660 TGGGCAAGTTTACACCTGAC 58.024 50.000 0.00 0.00 0.00 3.51
609 611 1.493022 TGGGCAAGTTTACACCTGACT 59.507 47.619 0.00 0.00 0.00 3.41
610 612 2.706723 TGGGCAAGTTTACACCTGACTA 59.293 45.455 0.00 0.00 0.00 2.59
611 613 3.136809 TGGGCAAGTTTACACCTGACTAA 59.863 43.478 0.00 0.00 0.00 2.24
612 614 4.202524 TGGGCAAGTTTACACCTGACTAAT 60.203 41.667 0.00 0.00 0.00 1.73
613 615 4.765339 GGGCAAGTTTACACCTGACTAATT 59.235 41.667 0.00 0.00 0.00 1.40
614 616 5.335661 GGGCAAGTTTACACCTGACTAATTG 60.336 44.000 0.00 0.00 0.00 2.32
615 617 5.472137 GGCAAGTTTACACCTGACTAATTGA 59.528 40.000 0.00 0.00 0.00 2.57
616 618 6.371389 GCAAGTTTACACCTGACTAATTGAC 58.629 40.000 0.00 0.00 0.00 3.18
617 619 6.017440 GCAAGTTTACACCTGACTAATTGACA 60.017 38.462 0.00 0.00 0.00 3.58
618 620 7.308589 GCAAGTTTACACCTGACTAATTGACAT 60.309 37.037 0.00 0.00 0.00 3.06
619 621 7.672983 AGTTTACACCTGACTAATTGACATG 57.327 36.000 0.00 0.00 0.00 3.21
620 622 7.450074 AGTTTACACCTGACTAATTGACATGA 58.550 34.615 0.00 0.00 0.00 3.07
621 623 7.604164 AGTTTACACCTGACTAATTGACATGAG 59.396 37.037 0.00 0.00 0.00 2.90
622 624 5.745312 ACACCTGACTAATTGACATGAGA 57.255 39.130 0.00 0.00 0.00 3.27
623 625 6.114187 ACACCTGACTAATTGACATGAGAA 57.886 37.500 0.00 0.00 0.00 2.87
624 626 6.533730 ACACCTGACTAATTGACATGAGAAA 58.466 36.000 0.00 0.00 0.00 2.52
625 627 6.998074 ACACCTGACTAATTGACATGAGAAAA 59.002 34.615 0.00 0.00 0.00 2.29
626 628 7.667219 ACACCTGACTAATTGACATGAGAAAAT 59.333 33.333 0.00 0.00 0.00 1.82
627 629 9.166173 CACCTGACTAATTGACATGAGAAAATA 57.834 33.333 0.00 0.00 0.00 1.40
628 630 9.388506 ACCTGACTAATTGACATGAGAAAATAG 57.611 33.333 0.00 0.49 0.00 1.73
629 631 9.605275 CCTGACTAATTGACATGAGAAAATAGA 57.395 33.333 0.00 0.00 0.00 1.98
631 633 9.605275 TGACTAATTGACATGAGAAAATAGAGG 57.395 33.333 0.00 0.00 0.00 3.69
632 634 9.823647 GACTAATTGACATGAGAAAATAGAGGA 57.176 33.333 0.00 0.00 0.00 3.71
633 635 9.829507 ACTAATTGACATGAGAAAATAGAGGAG 57.170 33.333 0.00 0.00 0.00 3.69
634 636 7.565323 AATTGACATGAGAAAATAGAGGAGC 57.435 36.000 0.00 0.00 0.00 4.70
635 637 5.946942 TGACATGAGAAAATAGAGGAGCT 57.053 39.130 0.00 0.00 0.00 4.09
636 638 6.305272 TGACATGAGAAAATAGAGGAGCTT 57.695 37.500 0.00 0.00 0.00 3.74
637 639 6.111382 TGACATGAGAAAATAGAGGAGCTTG 58.889 40.000 0.00 0.00 0.00 4.01
638 640 4.880696 ACATGAGAAAATAGAGGAGCTTGC 59.119 41.667 0.00 0.00 0.00 4.01
639 641 4.558226 TGAGAAAATAGAGGAGCTTGCA 57.442 40.909 0.00 0.00 0.00 4.08
640 642 5.108187 TGAGAAAATAGAGGAGCTTGCAT 57.892 39.130 0.00 0.00 0.00 3.96
641 643 4.880120 TGAGAAAATAGAGGAGCTTGCATG 59.120 41.667 0.00 0.00 0.00 4.06
642 644 5.108187 AGAAAATAGAGGAGCTTGCATGA 57.892 39.130 3.33 0.00 0.00 3.07
643 645 5.692928 AGAAAATAGAGGAGCTTGCATGAT 58.307 37.500 3.33 0.00 0.00 2.45
644 646 6.835174 AGAAAATAGAGGAGCTTGCATGATA 58.165 36.000 3.33 0.00 0.00 2.15
645 647 7.460071 AGAAAATAGAGGAGCTTGCATGATAT 58.540 34.615 3.33 0.00 0.00 1.63
646 648 8.600668 AGAAAATAGAGGAGCTTGCATGATATA 58.399 33.333 3.33 0.00 0.00 0.86
647 649 9.224267 GAAAATAGAGGAGCTTGCATGATATAA 57.776 33.333 3.33 0.00 0.00 0.98
648 650 8.789825 AAATAGAGGAGCTTGCATGATATAAG 57.210 34.615 3.33 0.00 0.00 1.73
649 651 5.163281 AGAGGAGCTTGCATGATATAAGG 57.837 43.478 3.33 0.00 0.00 2.69
650 652 4.842948 AGAGGAGCTTGCATGATATAAGGA 59.157 41.667 3.33 0.00 0.00 3.36
651 653 5.309020 AGAGGAGCTTGCATGATATAAGGAA 59.691 40.000 3.33 0.00 0.00 3.36
652 654 5.945310 AGGAGCTTGCATGATATAAGGAAA 58.055 37.500 3.33 0.00 0.00 3.13
653 655 6.550163 AGGAGCTTGCATGATATAAGGAAAT 58.450 36.000 3.33 0.00 0.00 2.17
654 656 6.433404 AGGAGCTTGCATGATATAAGGAAATG 59.567 38.462 3.33 0.00 0.00 2.32
655 657 6.208204 GGAGCTTGCATGATATAAGGAAATGT 59.792 38.462 3.33 0.00 0.00 2.71
656 658 7.391554 GGAGCTTGCATGATATAAGGAAATGTA 59.608 37.037 3.33 0.00 0.00 2.29
657 659 8.696043 AGCTTGCATGATATAAGGAAATGTAA 57.304 30.769 3.33 0.00 0.00 2.41
658 660 9.305555 AGCTTGCATGATATAAGGAAATGTAAT 57.694 29.630 3.33 0.00 0.00 1.89
659 661 9.565213 GCTTGCATGATATAAGGAAATGTAATC 57.435 33.333 3.33 0.00 0.00 1.75
693 695 6.763303 AAAATTTATCCAAACGAGTGTTGC 57.237 33.333 0.00 0.00 38.62 4.17
694 696 5.446143 AATTTATCCAAACGAGTGTTGCA 57.554 34.783 0.00 0.00 38.62 4.08
695 697 4.902443 TTTATCCAAACGAGTGTTGCAA 57.098 36.364 0.00 0.00 38.62 4.08
696 698 2.774439 ATCCAAACGAGTGTTGCAAC 57.226 45.000 22.83 22.83 38.62 4.17
697 699 0.375454 TCCAAACGAGTGTTGCAACG 59.625 50.000 23.79 14.69 38.62 4.10
698 700 1.199852 CCAAACGAGTGTTGCAACGC 61.200 55.000 31.01 31.01 38.62 4.84
699 701 0.522286 CAAACGAGTGTTGCAACGCA 60.522 50.000 36.74 15.16 41.71 5.24
700 702 0.169230 AAACGAGTGTTGCAACGCAA 59.831 45.000 36.74 14.38 46.80 4.85
713 715 6.443934 TTGCAACGCAATACACCTTATATT 57.556 33.333 0.00 0.00 43.99 1.28
714 716 6.443934 TGCAACGCAATACACCTTATATTT 57.556 33.333 0.00 0.00 34.76 1.40
715 717 6.857956 TGCAACGCAATACACCTTATATTTT 58.142 32.000 0.00 0.00 34.76 1.82
716 718 6.749578 TGCAACGCAATACACCTTATATTTTG 59.250 34.615 0.00 0.00 34.76 2.44
717 719 6.198216 GCAACGCAATACACCTTATATTTTGG 59.802 38.462 0.00 0.00 0.00 3.28
718 720 7.476667 CAACGCAATACACCTTATATTTTGGA 58.523 34.615 0.00 0.00 0.00 3.53
719 721 7.817418 ACGCAATACACCTTATATTTTGGAT 57.183 32.000 0.00 0.00 0.00 3.41
720 722 8.232913 ACGCAATACACCTTATATTTTGGATT 57.767 30.769 0.00 0.00 0.00 3.01
721 723 8.349983 ACGCAATACACCTTATATTTTGGATTC 58.650 33.333 0.00 0.00 0.00 2.52
722 724 8.567948 CGCAATACACCTTATATTTTGGATTCT 58.432 33.333 0.00 0.00 0.00 2.40
759 761 9.837681 TCTATACACCTTATATCAAGGAATGGA 57.162 33.333 9.96 5.31 39.81 3.41
761 763 6.192970 ACACCTTATATCAAGGAATGGAGG 57.807 41.667 9.96 0.00 39.81 4.30
762 764 5.073691 ACACCTTATATCAAGGAATGGAGGG 59.926 44.000 9.96 0.00 39.81 4.30
782 784 8.336235 TGGAGGGAGTATAAAAGAATTGAATGT 58.664 33.333 0.00 0.00 0.00 2.71
811 813 2.938838 TGAGAAATTGTTGACCCGGTT 58.061 42.857 0.00 0.00 0.00 4.44
817 819 7.230913 TGAGAAATTGTTGACCCGGTTAAAATA 59.769 33.333 0.00 0.00 0.00 1.40
820 822 7.527568 AATTGTTGACCCGGTTAAAATAAGA 57.472 32.000 0.00 0.00 0.00 2.10
833 835 8.269424 CGGTTAAAATAAGATGACTCAATCTCG 58.731 37.037 0.00 0.00 35.83 4.04
834 836 9.099454 GGTTAAAATAAGATGACTCAATCTCGT 57.901 33.333 0.00 0.00 35.83 4.18
837 839 8.777865 AAAATAAGATGACTCAATCTCGTTCA 57.222 30.769 0.00 0.00 35.83 3.18
849 852 5.352293 TCAATCTCGTTCATGACCTCAATTG 59.648 40.000 0.00 0.00 0.00 2.32
860 863 2.827921 GACCTCAATTGAATGTGGGCTT 59.172 45.455 9.88 0.00 38.64 4.35
870 873 6.917217 TTGAATGTGGGCTTTTTAAAACTG 57.083 33.333 0.00 0.00 0.00 3.16
880 889 6.096423 GGGCTTTTTAAAACTGGGGAGTATAG 59.904 42.308 0.00 0.00 0.00 1.31
881 890 6.662234 GGCTTTTTAAAACTGGGGAGTATAGT 59.338 38.462 0.00 0.00 0.00 2.12
883 892 7.176165 GCTTTTTAAAACTGGGGAGTATAGTGT 59.824 37.037 0.00 0.00 0.00 3.55
886 895 9.506018 TTTTAAAACTGGGGAGTATAGTGTTAC 57.494 33.333 0.00 0.00 0.00 2.50
896 905 7.002879 GGGAGTATAGTGTTACAGAGGATACA 58.997 42.308 0.00 0.00 41.41 2.29
907 916 8.275758 TGTTACAGAGGATACACTCTCTTCTAT 58.724 37.037 0.00 0.00 45.71 1.98
908 917 9.781633 GTTACAGAGGATACACTCTCTTCTATA 57.218 37.037 0.00 0.00 45.71 1.31
992 1003 3.126171 CGTCCTCTCAAAACAAACACACA 59.874 43.478 0.00 0.00 0.00 3.72
993 1004 4.412207 GTCCTCTCAAAACAAACACACAC 58.588 43.478 0.00 0.00 0.00 3.82
994 1005 4.075682 TCCTCTCAAAACAAACACACACA 58.924 39.130 0.00 0.00 0.00 3.72
1084 1095 0.894835 TGCAGCAGGTACTCGATTGA 59.105 50.000 0.00 0.00 34.60 2.57
1095 1106 2.513897 CGATTGACCCGCCCTTCC 60.514 66.667 0.00 0.00 0.00 3.46
1265 1282 1.078426 CCCGGACATGAGGGTCAAC 60.078 63.158 0.73 0.00 42.67 3.18
1339 1356 9.416794 CATGTGCTATAAGTAAGAACTAGGATG 57.583 37.037 0.00 0.00 33.75 3.51
1343 1360 7.783119 TGCTATAAGTAAGAACTAGGATGTGGA 59.217 37.037 0.00 0.00 33.75 4.02
1344 1361 8.083462 GCTATAAGTAAGAACTAGGATGTGGAC 58.917 40.741 0.00 0.00 33.75 4.02
1378 1398 9.921637 GAGAGTAGTAGCTGCTAATAAATTGAT 57.078 33.333 17.29 2.70 0.00 2.57
1417 1437 4.021192 TCTGTATCGCTCATGGCAATGATA 60.021 41.667 3.68 0.00 41.97 2.15
1441 1461 3.686016 ACTGGTATGTTTCCGCTTGATT 58.314 40.909 0.00 0.00 0.00 2.57
1461 1481 6.869695 TGATTCGCTAGTTTTAGGTGTGATA 58.130 36.000 0.00 0.00 0.00 2.15
1490 1515 4.705337 TGTTGTGTTGTGTTTTACCTCC 57.295 40.909 0.00 0.00 0.00 4.30
1578 5224 9.411801 CATCTCTACTCGCTATCTCTATATCTC 57.588 40.741 0.00 0.00 0.00 2.75
1579 5225 8.762481 TCTCTACTCGCTATCTCTATATCTCT 57.238 38.462 0.00 0.00 0.00 3.10
1580 5226 9.856162 TCTCTACTCGCTATCTCTATATCTCTA 57.144 37.037 0.00 0.00 0.00 2.43
1585 5231 9.368416 ACTCGCTATCTCTATATCTCTATCTCT 57.632 37.037 0.00 0.00 0.00 3.10
1680 5326 4.873827 TGTCTATATTTCCTCAACCGTTGC 59.126 41.667 6.37 0.00 0.00 4.17
1697 5343 0.672889 TGCGTGCAAAACATGTCCAT 59.327 45.000 0.00 0.00 37.62 3.41
1755 5401 6.128486 TGGCTCATGGTGTTACATCAATATT 58.872 36.000 1.26 0.00 0.00 1.28
1802 5448 0.469705 TGGGCTGGCACATTTCTTGT 60.470 50.000 2.88 0.00 38.20 3.16
1872 5518 9.268282 TGTTACTCCTGAATTCTTATTACCTCT 57.732 33.333 7.05 0.00 0.00 3.69
1918 5565 4.339429 CCACGACATAAATAAAAGTGCCG 58.661 43.478 0.00 0.00 0.00 5.69
1939 5586 5.538118 CCGGTAGGCTTTCTTTTCAAAAAT 58.462 37.500 0.00 0.00 0.00 1.82
1947 5596 8.344831 AGGCTTTCTTTTCAAAAATAATGTTGC 58.655 29.630 0.00 0.00 0.00 4.17
2168 5822 2.573340 CATCCCGGCTTTTGGCAC 59.427 61.111 0.00 0.00 46.39 5.01
2246 8835 3.557054 GGAGTAAGTGCAGACATCCAACA 60.557 47.826 0.00 0.00 0.00 3.33
2292 8881 7.711339 CCTATATTTCCTCGACTTTTAGCACTT 59.289 37.037 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.013921 ACAACAACAACACACTACCAGG 58.986 45.455 0.00 0.00 0.00 4.45
1 2 4.083003 ACAACAACAACAACACACTACCAG 60.083 41.667 0.00 0.00 0.00 4.00
2 3 3.821600 ACAACAACAACAACACACTACCA 59.178 39.130 0.00 0.00 0.00 3.25
3 4 4.428615 ACAACAACAACAACACACTACC 57.571 40.909 0.00 0.00 0.00 3.18
4 5 5.216648 ACAACAACAACAACAACACACTAC 58.783 37.500 0.00 0.00 0.00 2.73
5 6 5.440234 ACAACAACAACAACAACACACTA 57.560 34.783 0.00 0.00 0.00 2.74
6 7 4.314740 ACAACAACAACAACAACACACT 57.685 36.364 0.00 0.00 0.00 3.55
7 8 4.268884 ACAACAACAACAACAACAACACAC 59.731 37.500 0.00 0.00 0.00 3.82
8 9 4.433615 ACAACAACAACAACAACAACACA 58.566 34.783 0.00 0.00 0.00 3.72
9 10 5.193936 CAACAACAACAACAACAACAACAC 58.806 37.500 0.00 0.00 0.00 3.32
10 11 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
11 12 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
12 13 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
13 14 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
14 15 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
15 16 7.715265 ATAACAACAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
16 17 7.224753 ACAATAACAACAACAACAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
17 18 7.568433 ACAATAACAACAACAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
18 19 7.715265 ACAATAACAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
19 20 7.715265 AACAATAACAACAACAACAACAACA 57.285 28.000 0.00 0.00 0.00 3.33
20 21 8.276325 TCAAACAATAACAACAACAACAACAAC 58.724 29.630 0.00 0.00 0.00 3.32
21 22 8.276325 GTCAAACAATAACAACAACAACAACAA 58.724 29.630 0.00 0.00 0.00 2.83
22 23 7.358435 CGTCAAACAATAACAACAACAACAACA 60.358 33.333 0.00 0.00 0.00 3.33
23 24 6.945491 CGTCAAACAATAACAACAACAACAAC 59.055 34.615 0.00 0.00 0.00 3.32
24 25 6.089551 CCGTCAAACAATAACAACAACAACAA 59.910 34.615 0.00 0.00 0.00 2.83
25 26 5.573282 CCGTCAAACAATAACAACAACAACA 59.427 36.000 0.00 0.00 0.00 3.33
26 27 5.004916 CCCGTCAAACAATAACAACAACAAC 59.995 40.000 0.00 0.00 0.00 3.32
27 28 5.103000 CCCGTCAAACAATAACAACAACAA 58.897 37.500 0.00 0.00 0.00 2.83
28 29 4.158025 ACCCGTCAAACAATAACAACAACA 59.842 37.500 0.00 0.00 0.00 3.33
29 30 4.501198 CACCCGTCAAACAATAACAACAAC 59.499 41.667 0.00 0.00 0.00 3.32
30 31 4.440250 CCACCCGTCAAACAATAACAACAA 60.440 41.667 0.00 0.00 0.00 2.83
31 32 3.066900 CCACCCGTCAAACAATAACAACA 59.933 43.478 0.00 0.00 0.00 3.33
32 33 3.551250 CCCACCCGTCAAACAATAACAAC 60.551 47.826 0.00 0.00 0.00 3.32
33 34 2.623889 CCCACCCGTCAAACAATAACAA 59.376 45.455 0.00 0.00 0.00 2.83
34 35 2.231529 CCCACCCGTCAAACAATAACA 58.768 47.619 0.00 0.00 0.00 2.41
35 36 1.542472 CCCCACCCGTCAAACAATAAC 59.458 52.381 0.00 0.00 0.00 1.89
36 37 1.424302 TCCCCACCCGTCAAACAATAA 59.576 47.619 0.00 0.00 0.00 1.40
37 38 1.003812 CTCCCCACCCGTCAAACAATA 59.996 52.381 0.00 0.00 0.00 1.90
38 39 0.251165 CTCCCCACCCGTCAAACAAT 60.251 55.000 0.00 0.00 0.00 2.71
39 40 1.149627 CTCCCCACCCGTCAAACAA 59.850 57.895 0.00 0.00 0.00 2.83
40 41 1.131303 ATCTCCCCACCCGTCAAACA 61.131 55.000 0.00 0.00 0.00 2.83
90 91 3.386402 ACAAAAACCCATCAAATCACCGT 59.614 39.130 0.00 0.00 0.00 4.83
106 107 2.894126 ACACTGAACCACACCACAAAAA 59.106 40.909 0.00 0.00 0.00 1.94
167 169 3.969287 AGTACATGCAGTCACTGACAT 57.031 42.857 9.70 8.91 34.60 3.06
168 170 6.715347 ATATAGTACATGCAGTCACTGACA 57.285 37.500 9.70 6.69 34.60 3.58
171 173 6.201615 CACCAATATAGTACATGCAGTCACTG 59.798 42.308 0.00 0.00 34.12 3.66
172 174 6.283694 CACCAATATAGTACATGCAGTCACT 58.716 40.000 0.00 0.00 0.00 3.41
200 202 1.002430 AGGTGTCACCATGTGCTACTG 59.998 52.381 24.02 0.00 41.95 2.74
205 207 3.758554 AGAAAATAGGTGTCACCATGTGC 59.241 43.478 24.02 9.19 41.95 4.57
219 221 2.698797 TCCCACCGCCTAGAGAAAATAG 59.301 50.000 0.00 0.00 0.00 1.73
247 249 7.117812 CGGCCTATAAAAACATATCAATCTCGT 59.882 37.037 0.00 0.00 0.00 4.18
248 250 7.117812 ACGGCCTATAAAAACATATCAATCTCG 59.882 37.037 0.00 0.00 0.00 4.04
250 252 8.691661 AACGGCCTATAAAAACATATCAATCT 57.308 30.769 0.00 0.00 0.00 2.40
300 302 0.824182 ACGATTTTGACCGGGCCAAA 60.824 50.000 9.31 9.31 0.00 3.28
318 320 9.258826 ACGTATTTAATTTTGGGTTTGGTTTAC 57.741 29.630 0.00 0.00 0.00 2.01
343 345 8.630840 GTTTTGAAGCTCTTTCATTTAATCGAC 58.369 33.333 0.00 0.00 44.90 4.20
346 348 7.595130 ACCGTTTTGAAGCTCTTTCATTTAATC 59.405 33.333 0.00 0.00 44.90 1.75
418 420 0.179140 CAATTTTGATCGGGCCCACG 60.179 55.000 24.92 9.15 0.00 4.94
428 430 6.185114 TCAATGGTTCAACCCAATTTTGAT 57.815 33.333 3.42 0.00 37.50 2.57
436 438 2.176798 AGGTCTTCAATGGTTCAACCCA 59.823 45.455 3.42 0.00 37.50 4.51
471 473 9.777297 ACACCATGCTTTCTAATTTTTAATGTT 57.223 25.926 0.00 0.00 0.00 2.71
486 488 6.787957 AGGGAGTATACTATACACCATGCTTT 59.212 38.462 18.93 0.80 31.13 3.51
494 496 5.414144 GGAACGGAGGGAGTATACTATACAC 59.586 48.000 5.09 0.00 0.00 2.90
500 502 4.803329 TTAGGAACGGAGGGAGTATACT 57.197 45.455 4.68 4.68 0.00 2.12
501 503 5.303845 ACATTTAGGAACGGAGGGAGTATAC 59.696 44.000 0.00 0.00 0.00 1.47
502 504 5.461327 ACATTTAGGAACGGAGGGAGTATA 58.539 41.667 0.00 0.00 0.00 1.47
503 505 4.296056 ACATTTAGGAACGGAGGGAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
504 506 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
505 507 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
506 508 4.323553 CTACATTTAGGAACGGAGGGAG 57.676 50.000 0.00 0.00 0.00 4.30
517 519 8.899771 CCAAAAACTATACACCCTACATTTAGG 58.100 37.037 0.00 0.00 44.43 2.69
518 520 8.403236 GCCAAAAACTATACACCCTACATTTAG 58.597 37.037 0.00 0.00 0.00 1.85
519 521 7.889073 TGCCAAAAACTATACACCCTACATTTA 59.111 33.333 0.00 0.00 0.00 1.40
520 522 6.722129 TGCCAAAAACTATACACCCTACATTT 59.278 34.615 0.00 0.00 0.00 2.32
521 523 6.152154 GTGCCAAAAACTATACACCCTACATT 59.848 38.462 0.00 0.00 0.00 2.71
522 524 5.650703 GTGCCAAAAACTATACACCCTACAT 59.349 40.000 0.00 0.00 0.00 2.29
523 525 5.005094 GTGCCAAAAACTATACACCCTACA 58.995 41.667 0.00 0.00 0.00 2.74
524 526 4.093850 CGTGCCAAAAACTATACACCCTAC 59.906 45.833 0.00 0.00 0.00 3.18
525 527 4.020396 TCGTGCCAAAAACTATACACCCTA 60.020 41.667 0.00 0.00 0.00 3.53
526 528 3.078837 CGTGCCAAAAACTATACACCCT 58.921 45.455 0.00 0.00 0.00 4.34
527 529 3.075884 TCGTGCCAAAAACTATACACCC 58.924 45.455 0.00 0.00 0.00 4.61
528 530 4.752661 TTCGTGCCAAAAACTATACACC 57.247 40.909 0.00 0.00 0.00 4.16
529 531 7.631915 AATTTTCGTGCCAAAAACTATACAC 57.368 32.000 0.00 0.00 0.00 2.90
530 532 9.745880 TTTAATTTTCGTGCCAAAAACTATACA 57.254 25.926 0.00 0.00 0.00 2.29
533 535 9.535878 TTCTTTAATTTTCGTGCCAAAAACTAT 57.464 25.926 0.00 0.00 0.00 2.12
534 536 8.809478 GTTCTTTAATTTTCGTGCCAAAAACTA 58.191 29.630 0.00 0.00 0.00 2.24
535 537 7.463515 CGTTCTTTAATTTTCGTGCCAAAAACT 60.464 33.333 0.00 0.00 0.00 2.66
536 538 6.621794 CGTTCTTTAATTTTCGTGCCAAAAAC 59.378 34.615 0.00 0.00 0.00 2.43
537 539 6.310711 ACGTTCTTTAATTTTCGTGCCAAAAA 59.689 30.769 0.00 0.00 0.00 1.94
538 540 5.805994 ACGTTCTTTAATTTTCGTGCCAAAA 59.194 32.000 0.00 0.00 0.00 2.44
539 541 5.341617 ACGTTCTTTAATTTTCGTGCCAAA 58.658 33.333 0.00 0.00 0.00 3.28
540 542 4.922719 ACGTTCTTTAATTTTCGTGCCAA 58.077 34.783 0.00 0.00 0.00 4.52
541 543 4.555348 ACGTTCTTTAATTTTCGTGCCA 57.445 36.364 0.00 0.00 0.00 4.92
542 544 4.546941 CGTACGTTCTTTAATTTTCGTGCC 59.453 41.667 7.22 0.00 32.36 5.01
543 545 5.055973 CACGTACGTTCTTTAATTTTCGTGC 59.944 40.000 20.23 0.00 38.36 5.34
544 546 6.346339 TCACGTACGTTCTTTAATTTTCGTG 58.654 36.000 20.23 1.39 43.60 4.35
545 547 6.509317 TCACGTACGTTCTTTAATTTTCGT 57.491 33.333 20.23 0.00 35.73 3.85
546 548 6.513991 CCTTCACGTACGTTCTTTAATTTTCG 59.486 38.462 20.23 2.50 0.00 3.46
547 549 6.301607 GCCTTCACGTACGTTCTTTAATTTTC 59.698 38.462 20.23 0.00 0.00 2.29
548 550 6.138088 GCCTTCACGTACGTTCTTTAATTTT 58.862 36.000 20.23 0.00 0.00 1.82
549 551 5.236911 TGCCTTCACGTACGTTCTTTAATTT 59.763 36.000 20.23 0.00 0.00 1.82
550 552 4.751098 TGCCTTCACGTACGTTCTTTAATT 59.249 37.500 20.23 0.00 0.00 1.40
551 553 4.309099 TGCCTTCACGTACGTTCTTTAAT 58.691 39.130 20.23 0.00 0.00 1.40
552 554 3.715495 TGCCTTCACGTACGTTCTTTAA 58.285 40.909 20.23 7.37 0.00 1.52
553 555 3.367992 TGCCTTCACGTACGTTCTTTA 57.632 42.857 20.23 0.87 0.00 1.85
554 556 2.228138 TGCCTTCACGTACGTTCTTT 57.772 45.000 20.23 0.00 0.00 2.52
555 557 2.228138 TTGCCTTCACGTACGTTCTT 57.772 45.000 20.23 0.00 0.00 2.52
556 558 2.228138 TTTGCCTTCACGTACGTTCT 57.772 45.000 20.23 0.00 0.00 3.01
557 559 3.531262 ATTTTGCCTTCACGTACGTTC 57.469 42.857 20.23 6.32 0.00 3.95
558 560 3.974871 AATTTTGCCTTCACGTACGTT 57.025 38.095 20.23 0.76 0.00 3.99
559 561 3.312973 TGAAATTTTGCCTTCACGTACGT 59.687 39.130 16.72 16.72 0.00 3.57
560 562 3.662186 GTGAAATTTTGCCTTCACGTACG 59.338 43.478 15.01 15.01 41.33 3.67
566 568 6.128063 CCAAAACTTGTGAAATTTTGCCTTCA 60.128 34.615 0.00 0.00 40.43 3.02
567 569 6.257423 CCAAAACTTGTGAAATTTTGCCTTC 58.743 36.000 0.00 0.00 40.43 3.46
568 570 5.125257 CCCAAAACTTGTGAAATTTTGCCTT 59.875 36.000 0.00 0.00 40.43 4.35
569 571 4.639755 CCCAAAACTTGTGAAATTTTGCCT 59.360 37.500 0.00 0.00 40.43 4.75
570 572 4.733230 GCCCAAAACTTGTGAAATTTTGCC 60.733 41.667 0.00 0.00 40.43 4.52
571 573 4.142513 TGCCCAAAACTTGTGAAATTTTGC 60.143 37.500 0.00 0.00 40.43 3.68
572 574 5.557891 TGCCCAAAACTTGTGAAATTTTG 57.442 34.783 0.00 0.00 41.10 2.44
573 575 5.709631 ACTTGCCCAAAACTTGTGAAATTTT 59.290 32.000 0.00 0.00 0.00 1.82
574 576 5.252547 ACTTGCCCAAAACTTGTGAAATTT 58.747 33.333 0.00 0.00 0.00 1.82
575 577 4.842574 ACTTGCCCAAAACTTGTGAAATT 58.157 34.783 0.00 0.00 0.00 1.82
576 578 4.486125 ACTTGCCCAAAACTTGTGAAAT 57.514 36.364 0.00 0.00 0.00 2.17
577 579 3.971245 ACTTGCCCAAAACTTGTGAAA 57.029 38.095 0.00 0.00 0.00 2.69
578 580 3.971245 AACTTGCCCAAAACTTGTGAA 57.029 38.095 0.00 0.00 0.00 3.18
579 581 3.971245 AAACTTGCCCAAAACTTGTGA 57.029 38.095 0.00 0.00 0.00 3.58
580 582 4.328712 GTGTAAACTTGCCCAAAACTTGTG 59.671 41.667 0.00 0.00 0.00 3.33
581 583 4.500127 GTGTAAACTTGCCCAAAACTTGT 58.500 39.130 0.00 0.00 0.00 3.16
582 584 3.868661 GGTGTAAACTTGCCCAAAACTTG 59.131 43.478 0.00 0.00 0.00 3.16
583 585 3.772572 AGGTGTAAACTTGCCCAAAACTT 59.227 39.130 0.00 0.00 0.00 2.66
584 586 3.132111 CAGGTGTAAACTTGCCCAAAACT 59.868 43.478 0.00 0.00 0.00 2.66
585 587 3.131400 TCAGGTGTAAACTTGCCCAAAAC 59.869 43.478 0.00 0.00 0.00 2.43
586 588 3.131400 GTCAGGTGTAAACTTGCCCAAAA 59.869 43.478 0.00 0.00 0.00 2.44
587 589 2.691011 GTCAGGTGTAAACTTGCCCAAA 59.309 45.455 0.00 0.00 0.00 3.28
588 590 2.092103 AGTCAGGTGTAAACTTGCCCAA 60.092 45.455 0.00 0.00 0.00 4.12
589 591 1.493022 AGTCAGGTGTAAACTTGCCCA 59.507 47.619 0.00 0.00 0.00 5.36
590 592 2.271944 AGTCAGGTGTAAACTTGCCC 57.728 50.000 0.00 0.00 0.00 5.36
591 593 5.472137 TCAATTAGTCAGGTGTAAACTTGCC 59.528 40.000 0.00 0.00 0.00 4.52
592 594 6.017440 TGTCAATTAGTCAGGTGTAAACTTGC 60.017 38.462 0.00 0.00 0.00 4.01
593 595 7.490962 TGTCAATTAGTCAGGTGTAAACTTG 57.509 36.000 0.00 0.00 0.00 3.16
594 596 7.936847 TCATGTCAATTAGTCAGGTGTAAACTT 59.063 33.333 0.00 0.00 0.00 2.66
595 597 7.450074 TCATGTCAATTAGTCAGGTGTAAACT 58.550 34.615 0.00 0.00 0.00 2.66
596 598 7.602644 TCTCATGTCAATTAGTCAGGTGTAAAC 59.397 37.037 0.00 0.00 0.00 2.01
597 599 7.676004 TCTCATGTCAATTAGTCAGGTGTAAA 58.324 34.615 0.00 0.00 0.00 2.01
598 600 7.239763 TCTCATGTCAATTAGTCAGGTGTAA 57.760 36.000 0.00 0.00 0.00 2.41
599 601 6.850752 TCTCATGTCAATTAGTCAGGTGTA 57.149 37.500 0.00 0.00 0.00 2.90
600 602 5.745312 TCTCATGTCAATTAGTCAGGTGT 57.255 39.130 0.00 0.00 0.00 4.16
601 603 7.439157 TTTTCTCATGTCAATTAGTCAGGTG 57.561 36.000 0.00 0.00 0.00 4.00
602 604 9.388506 CTATTTTCTCATGTCAATTAGTCAGGT 57.611 33.333 0.00 0.00 0.00 4.00
603 605 9.605275 TCTATTTTCTCATGTCAATTAGTCAGG 57.395 33.333 0.00 0.00 0.00 3.86
605 607 9.605275 CCTCTATTTTCTCATGTCAATTAGTCA 57.395 33.333 0.00 0.00 0.00 3.41
606 608 9.823647 TCCTCTATTTTCTCATGTCAATTAGTC 57.176 33.333 0.00 0.00 0.00 2.59
607 609 9.829507 CTCCTCTATTTTCTCATGTCAATTAGT 57.170 33.333 0.00 0.00 0.00 2.24
608 610 8.772705 GCTCCTCTATTTTCTCATGTCAATTAG 58.227 37.037 0.00 0.00 0.00 1.73
609 611 8.489489 AGCTCCTCTATTTTCTCATGTCAATTA 58.511 33.333 0.00 0.00 0.00 1.40
610 612 7.344913 AGCTCCTCTATTTTCTCATGTCAATT 58.655 34.615 0.00 0.00 0.00 2.32
611 613 6.897986 AGCTCCTCTATTTTCTCATGTCAAT 58.102 36.000 0.00 0.00 0.00 2.57
612 614 6.305272 AGCTCCTCTATTTTCTCATGTCAA 57.695 37.500 0.00 0.00 0.00 3.18
613 615 5.946942 AGCTCCTCTATTTTCTCATGTCA 57.053 39.130 0.00 0.00 0.00 3.58
614 616 5.007528 GCAAGCTCCTCTATTTTCTCATGTC 59.992 44.000 0.00 0.00 0.00 3.06
615 617 4.880696 GCAAGCTCCTCTATTTTCTCATGT 59.119 41.667 0.00 0.00 0.00 3.21
616 618 4.880120 TGCAAGCTCCTCTATTTTCTCATG 59.120 41.667 0.00 0.00 0.00 3.07
617 619 5.108187 TGCAAGCTCCTCTATTTTCTCAT 57.892 39.130 0.00 0.00 0.00 2.90
618 620 4.558226 TGCAAGCTCCTCTATTTTCTCA 57.442 40.909 0.00 0.00 0.00 3.27
619 621 5.121811 TCATGCAAGCTCCTCTATTTTCTC 58.878 41.667 0.00 0.00 0.00 2.87
620 622 5.108187 TCATGCAAGCTCCTCTATTTTCT 57.892 39.130 0.00 0.00 0.00 2.52
621 623 7.684937 ATATCATGCAAGCTCCTCTATTTTC 57.315 36.000 0.00 0.00 0.00 2.29
622 624 9.228949 CTTATATCATGCAAGCTCCTCTATTTT 57.771 33.333 0.00 0.00 0.00 1.82
623 625 7.828223 CCTTATATCATGCAAGCTCCTCTATTT 59.172 37.037 0.00 0.00 0.00 1.40
624 626 7.181665 TCCTTATATCATGCAAGCTCCTCTATT 59.818 37.037 0.00 0.00 0.00 1.73
625 627 6.671340 TCCTTATATCATGCAAGCTCCTCTAT 59.329 38.462 0.00 0.00 0.00 1.98
626 628 6.019108 TCCTTATATCATGCAAGCTCCTCTA 58.981 40.000 0.00 0.00 0.00 2.43
627 629 4.842948 TCCTTATATCATGCAAGCTCCTCT 59.157 41.667 0.00 0.00 0.00 3.69
628 630 5.157940 TCCTTATATCATGCAAGCTCCTC 57.842 43.478 0.00 0.00 0.00 3.71
629 631 5.573380 TTCCTTATATCATGCAAGCTCCT 57.427 39.130 0.00 0.00 0.00 3.69
630 632 6.208204 ACATTTCCTTATATCATGCAAGCTCC 59.792 38.462 0.00 0.00 0.00 4.70
631 633 7.211966 ACATTTCCTTATATCATGCAAGCTC 57.788 36.000 0.00 0.00 0.00 4.09
632 634 8.696043 TTACATTTCCTTATATCATGCAAGCT 57.304 30.769 0.00 0.00 0.00 3.74
633 635 9.565213 GATTACATTTCCTTATATCATGCAAGC 57.435 33.333 0.00 0.00 0.00 4.01
669 671 6.758886 TGCAACACTCGTTTGGATAAATTTTT 59.241 30.769 0.00 0.00 31.13 1.94
670 672 6.276847 TGCAACACTCGTTTGGATAAATTTT 58.723 32.000 0.00 0.00 31.13 1.82
671 673 5.837437 TGCAACACTCGTTTGGATAAATTT 58.163 33.333 0.00 0.00 31.13 1.82
672 674 5.446143 TGCAACACTCGTTTGGATAAATT 57.554 34.783 0.00 0.00 31.13 1.82
673 675 5.219633 GTTGCAACACTCGTTTGGATAAAT 58.780 37.500 24.52 0.00 31.13 1.40
674 676 4.602995 GTTGCAACACTCGTTTGGATAAA 58.397 39.130 24.52 0.00 31.13 1.40
675 677 3.303461 CGTTGCAACACTCGTTTGGATAA 60.303 43.478 28.01 0.00 31.13 1.75
676 678 2.222213 CGTTGCAACACTCGTTTGGATA 59.778 45.455 28.01 0.00 31.13 2.59
677 679 1.002900 CGTTGCAACACTCGTTTGGAT 60.003 47.619 28.01 0.00 31.13 3.41
678 680 0.375454 CGTTGCAACACTCGTTTGGA 59.625 50.000 28.01 0.00 31.13 3.53
679 681 1.199852 GCGTTGCAACACTCGTTTGG 61.200 55.000 28.01 10.28 31.13 3.28
680 682 0.522286 TGCGTTGCAACACTCGTTTG 60.522 50.000 28.01 10.97 34.76 2.93
681 683 0.169230 TTGCGTTGCAACACTCGTTT 59.831 45.000 28.01 0.00 43.99 3.60
682 684 1.797441 TTGCGTTGCAACACTCGTT 59.203 47.368 28.01 0.00 43.99 3.85
683 685 3.492051 TTGCGTTGCAACACTCGT 58.508 50.000 28.01 0.00 43.99 4.18
691 693 6.443934 AAATATAAGGTGTATTGCGTTGCA 57.556 33.333 0.00 0.00 36.47 4.08
692 694 6.198216 CCAAAATATAAGGTGTATTGCGTTGC 59.802 38.462 0.00 0.00 0.00 4.17
693 695 7.476667 TCCAAAATATAAGGTGTATTGCGTTG 58.523 34.615 0.00 0.00 0.00 4.10
694 696 7.633193 TCCAAAATATAAGGTGTATTGCGTT 57.367 32.000 0.00 0.00 0.00 4.84
695 697 7.817418 ATCCAAAATATAAGGTGTATTGCGT 57.183 32.000 0.00 0.00 0.00 5.24
696 698 8.567948 AGAATCCAAAATATAAGGTGTATTGCG 58.432 33.333 0.00 0.00 0.00 4.85
733 735 9.837681 TCCATTCCTTGATATAAGGTGTATAGA 57.162 33.333 5.67 0.00 38.55 1.98
735 737 9.046846 CCTCCATTCCTTGATATAAGGTGTATA 57.953 37.037 5.67 0.00 38.55 1.47
736 738 7.037297 CCCTCCATTCCTTGATATAAGGTGTAT 60.037 40.741 5.67 0.00 38.55 2.29
737 739 6.272324 CCCTCCATTCCTTGATATAAGGTGTA 59.728 42.308 5.67 0.00 38.55 2.90
738 740 5.073691 CCCTCCATTCCTTGATATAAGGTGT 59.926 44.000 5.67 0.00 38.55 4.16
739 741 5.310594 TCCCTCCATTCCTTGATATAAGGTG 59.689 44.000 5.67 0.00 38.55 4.00
740 742 5.486332 TCCCTCCATTCCTTGATATAAGGT 58.514 41.667 5.67 0.00 38.55 3.50
741 743 5.549619 ACTCCCTCCATTCCTTGATATAAGG 59.450 44.000 0.00 0.00 38.78 2.69
742 744 6.694445 ACTCCCTCCATTCCTTGATATAAG 57.306 41.667 0.00 0.00 0.00 1.73
743 745 9.852784 TTATACTCCCTCCATTCCTTGATATAA 57.147 33.333 0.00 0.00 0.00 0.98
744 746 9.852784 TTTATACTCCCTCCATTCCTTGATATA 57.147 33.333 0.00 0.00 0.00 0.86
745 747 8.757307 TTTATACTCCCTCCATTCCTTGATAT 57.243 34.615 0.00 0.00 0.00 1.63
746 748 8.575736 TTTTATACTCCCTCCATTCCTTGATA 57.424 34.615 0.00 0.00 0.00 2.15
747 749 7.350921 TCTTTTATACTCCCTCCATTCCTTGAT 59.649 37.037 0.00 0.00 0.00 2.57
748 750 6.676632 TCTTTTATACTCCCTCCATTCCTTGA 59.323 38.462 0.00 0.00 0.00 3.02
749 751 6.900194 TCTTTTATACTCCCTCCATTCCTTG 58.100 40.000 0.00 0.00 0.00 3.61
750 752 7.525158 TTCTTTTATACTCCCTCCATTCCTT 57.475 36.000 0.00 0.00 0.00 3.36
751 753 7.713704 ATTCTTTTATACTCCCTCCATTCCT 57.286 36.000 0.00 0.00 0.00 3.36
752 754 7.998964 TCAATTCTTTTATACTCCCTCCATTCC 59.001 37.037 0.00 0.00 0.00 3.01
753 755 8.980481 TCAATTCTTTTATACTCCCTCCATTC 57.020 34.615 0.00 0.00 0.00 2.67
754 756 9.942526 ATTCAATTCTTTTATACTCCCTCCATT 57.057 29.630 0.00 0.00 0.00 3.16
755 757 9.359653 CATTCAATTCTTTTATACTCCCTCCAT 57.640 33.333 0.00 0.00 0.00 3.41
756 758 8.336235 ACATTCAATTCTTTTATACTCCCTCCA 58.664 33.333 0.00 0.00 0.00 3.86
757 759 8.624776 CACATTCAATTCTTTTATACTCCCTCC 58.375 37.037 0.00 0.00 0.00 4.30
758 760 9.396022 TCACATTCAATTCTTTTATACTCCCTC 57.604 33.333 0.00 0.00 0.00 4.30
759 761 9.927081 ATCACATTCAATTCTTTTATACTCCCT 57.073 29.630 0.00 0.00 0.00 4.20
782 784 6.071952 GGGTCAACAATTTCTCAAAGCTATCA 60.072 38.462 0.00 0.00 0.00 2.15
811 813 9.869757 TGAACGAGATTGAGTCATCTTATTTTA 57.130 29.630 0.00 0.00 0.00 1.52
817 819 5.809562 GTCATGAACGAGATTGAGTCATCTT 59.190 40.000 0.00 0.00 0.00 2.40
820 822 4.161189 AGGTCATGAACGAGATTGAGTCAT 59.839 41.667 4.80 0.00 0.00 3.06
833 835 5.404946 CCACATTCAATTGAGGTCATGAAC 58.595 41.667 19.80 1.26 34.88 3.18
834 836 4.463539 CCCACATTCAATTGAGGTCATGAA 59.536 41.667 19.80 0.48 36.35 2.57
836 838 3.429822 GCCCACATTCAATTGAGGTCATG 60.430 47.826 8.41 11.62 0.00 3.07
837 839 2.762327 GCCCACATTCAATTGAGGTCAT 59.238 45.455 8.41 0.00 0.00 3.06
849 852 4.754618 CCCAGTTTTAAAAAGCCCACATTC 59.245 41.667 1.31 0.00 0.00 2.67
860 863 9.506018 GTAACACTATACTCCCCAGTTTTAAAA 57.494 33.333 0.00 0.00 33.62 1.52
870 873 4.801164 TCCTCTGTAACACTATACTCCCC 58.199 47.826 0.00 0.00 0.00 4.81
880 889 6.376018 AGAAGAGAGTGTATCCTCTGTAACAC 59.624 42.308 0.00 0.00 41.85 3.32
881 890 6.486056 AGAAGAGAGTGTATCCTCTGTAACA 58.514 40.000 0.00 0.00 41.85 2.41
896 905 9.854668 ACACACACAGTATATATAGAAGAGAGT 57.145 33.333 0.00 0.00 0.00 3.24
907 916 4.879545 TCTGCGAGACACACACAGTATATA 59.120 41.667 0.00 0.00 0.00 0.86
908 917 3.694566 TCTGCGAGACACACACAGTATAT 59.305 43.478 0.00 0.00 0.00 0.86
992 1003 0.716591 TCTCCCCTCCATAGGTGTGT 59.283 55.000 0.00 0.00 41.89 3.72
993 1004 1.765314 CTTCTCCCCTCCATAGGTGTG 59.235 57.143 0.00 0.00 41.89 3.82
994 1005 1.972207 GCTTCTCCCCTCCATAGGTGT 60.972 57.143 0.00 0.00 41.89 4.16
1084 1095 2.439245 GAAAAGGGAAGGGCGGGT 59.561 61.111 0.00 0.00 0.00 5.28
1095 1106 3.265791 CGTGGAAGAGAGATGGAAAAGG 58.734 50.000 0.00 0.00 0.00 3.11
1238 1255 0.616395 TCATGTCCGGGTTCTGGCTA 60.616 55.000 0.00 0.00 0.00 3.93
1292 1309 2.546778 GTACAGTGGCAATAGCGCTTA 58.453 47.619 18.68 1.37 43.41 3.09
1339 1356 3.080319 ACTACTCTCTAACCACGTCCAC 58.920 50.000 0.00 0.00 0.00 4.02
1343 1360 3.940221 CAGCTACTACTCTCTAACCACGT 59.060 47.826 0.00 0.00 0.00 4.49
1344 1361 3.242804 GCAGCTACTACTCTCTAACCACG 60.243 52.174 0.00 0.00 0.00 4.94
1378 1398 6.659776 CGATACAGATGAACATCTCGAACTA 58.340 40.000 13.47 1.46 45.78 2.24
1417 1437 4.839121 TCAAGCGGAAACATACCAGTAAT 58.161 39.130 0.00 0.00 0.00 1.89
1441 1461 5.047164 TGGTTATCACACCTAAAACTAGCGA 60.047 40.000 0.00 0.00 37.75 4.93
1461 1481 3.951775 ACACAACACAACAACATGGTT 57.048 38.095 0.00 0.00 0.00 3.67
1583 5229 9.674068 ACTCGCTCTATCACATTAATAGATAGA 57.326 33.333 24.25 24.25 44.66 1.98
1586 5232 7.543868 GCAACTCGCTCTATCACATTAATAGAT 59.456 37.037 7.49 7.49 35.68 1.98
1587 5233 6.863645 GCAACTCGCTCTATCACATTAATAGA 59.136 38.462 0.00 0.00 37.77 1.98
1588 5234 7.043454 GCAACTCGCTCTATCACATTAATAG 57.957 40.000 0.00 0.00 37.77 1.73
1680 5326 2.702898 TGATGGACATGTTTTGCACG 57.297 45.000 0.00 0.00 0.00 5.34
1755 5401 3.702792 TCCCTGGAACAAAAACTGAACA 58.297 40.909 0.00 0.00 38.70 3.18
1872 5518 6.371548 GGCAGAGTTACATCATGAAAGTACAA 59.628 38.462 0.00 0.00 0.00 2.41
1918 5565 9.489084 ACATTATTTTTGAAAAGAAAGCCTACC 57.511 29.630 1.04 0.00 33.45 3.18
2141 5795 5.415221 CAAAAGCCGGGATGCTAAAATTTA 58.585 37.500 2.18 0.00 41.80 1.40
2213 5868 5.526111 TCTGCACTTACTCCTTTTGTAACAC 59.474 40.000 0.00 0.00 0.00 3.32
2246 8835 4.079253 AGGCCGTTAAATCAACAAGATGT 58.921 39.130 0.00 0.00 36.96 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.