Multiple sequence alignment - TraesCS5B01G338000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G338000 chr5B 100.000 3240 0 0 1 3240 522073402 522076641 0.000000e+00 5984.0
1 TraesCS5B01G338000 chr5B 82.873 1448 214 24 1804 3240 42178863 42180287 0.000000e+00 1269.0
2 TraesCS5B01G338000 chr5B 87.958 191 23 0 3050 3240 79787134 79786944 3.250000e-55 226.0
3 TraesCS5B01G338000 chr2A 93.171 2753 167 12 497 3240 718369068 718366328 0.000000e+00 4023.0
4 TraesCS5B01G338000 chr2A 82.902 193 33 0 3048 3240 756165549 756165741 1.190000e-39 174.0
5 TraesCS5B01G338000 chr1D 83.706 2774 380 50 497 3240 78383070 78385801 0.000000e+00 2553.0
6 TraesCS5B01G338000 chr2D 83.622 2772 379 50 497 3240 534516070 534513346 0.000000e+00 2534.0
7 TraesCS5B01G338000 chr2D 83.195 1446 207 23 1804 3240 471445485 471444067 0.000000e+00 1291.0
8 TraesCS5B01G338000 chr3D 82.562 1600 229 31 497 2077 561030756 561029188 0.000000e+00 1363.0
9 TraesCS5B01G338000 chr3D 90.109 1011 97 2 2230 3240 561029074 561028067 0.000000e+00 1310.0
10 TraesCS5B01G338000 chr3D 79.365 126 26 0 1952 2077 1698707 1698582 4.450000e-14 89.8
11 TraesCS5B01G338000 chr1A 82.735 1448 213 24 1804 3240 21635770 21634349 0.000000e+00 1254.0
12 TraesCS5B01G338000 chr1A 82.597 1448 218 24 1804 3240 573953151 573954575 0.000000e+00 1247.0
13 TraesCS5B01G338000 chr1A 92.547 161 12 0 1 161 249036016 249035856 6.990000e-57 231.0
14 TraesCS5B01G338000 chr4B 83.394 1102 164 14 1804 2896 633916861 633917952 0.000000e+00 1003.0
15 TraesCS5B01G338000 chr4B 88.083 193 23 0 3048 3240 633918082 633918274 2.510000e-56 230.0
16 TraesCS5B01G338000 chr5A 88.102 353 21 8 163 494 102331150 102331502 1.810000e-107 399.0
17 TraesCS5B01G338000 chr5A 78.014 141 31 0 1937 2077 611014060 611013920 4.450000e-14 89.8
18 TraesCS5B01G338000 chr6A 93.865 163 10 0 1 163 608294739 608294901 2.500000e-61 246.0
19 TraesCS5B01G338000 chr7A 82.902 193 33 0 3048 3240 126873290 126873482 1.190000e-39 174.0
20 TraesCS5B01G338000 chr7A 89.362 141 8 2 6 146 137841249 137841116 1.550000e-38 171.0
21 TraesCS5B01G338000 chr7A 83.333 162 23 3 2 161 247786831 247786672 2.600000e-31 147.0
22 TraesCS5B01G338000 chr3B 81.250 144 27 0 1937 2080 763196147 763196290 2.040000e-22 117.0
23 TraesCS5B01G338000 chr6B 80.800 125 24 0 1925 2049 225557660 225557536 7.400000e-17 99.0
24 TraesCS5B01G338000 chr6B 78.472 144 31 0 1934 2077 669535190 669535333 9.570000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G338000 chr5B 522073402 522076641 3239 False 5984.0 5984 100.0000 1 3240 1 chr5B.!!$F2 3239
1 TraesCS5B01G338000 chr5B 42178863 42180287 1424 False 1269.0 1269 82.8730 1804 3240 1 chr5B.!!$F1 1436
2 TraesCS5B01G338000 chr2A 718366328 718369068 2740 True 4023.0 4023 93.1710 497 3240 1 chr2A.!!$R1 2743
3 TraesCS5B01G338000 chr1D 78383070 78385801 2731 False 2553.0 2553 83.7060 497 3240 1 chr1D.!!$F1 2743
4 TraesCS5B01G338000 chr2D 534513346 534516070 2724 True 2534.0 2534 83.6220 497 3240 1 chr2D.!!$R2 2743
5 TraesCS5B01G338000 chr2D 471444067 471445485 1418 True 1291.0 1291 83.1950 1804 3240 1 chr2D.!!$R1 1436
6 TraesCS5B01G338000 chr3D 561028067 561030756 2689 True 1336.5 1363 86.3355 497 3240 2 chr3D.!!$R2 2743
7 TraesCS5B01G338000 chr1A 21634349 21635770 1421 True 1254.0 1254 82.7350 1804 3240 1 chr1A.!!$R1 1436
8 TraesCS5B01G338000 chr1A 573953151 573954575 1424 False 1247.0 1247 82.5970 1804 3240 1 chr1A.!!$F1 1436
9 TraesCS5B01G338000 chr4B 633916861 633918274 1413 False 616.5 1003 85.7385 1804 3240 2 chr4B.!!$F1 1436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.037512 CCAATGCAATTTCACGCCCA 60.038 50.0 0.0 0.0 31.22 5.36 F
179 180 0.248866 CACGCCCAACACAACCTTTC 60.249 55.0 0.0 0.0 0.00 2.62 F
181 182 0.310854 CGCCCAACACAACCTTTCTC 59.689 55.0 0.0 0.0 0.00 2.87 F
182 183 0.673985 GCCCAACACAACCTTTCTCC 59.326 55.0 0.0 0.0 0.00 3.71 F
1361 1365 0.809385 GACGTGAGGAATCTCCGACA 59.191 55.0 0.0 0.0 42.75 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1148 1152 0.108992 GGAACCTGCATACACGACGA 60.109 55.000 0.00 0.0 0.00 4.20 R
1863 1883 0.178767 TGCGCATTGATAGCTCCAGT 59.821 50.000 5.66 0.0 0.00 4.00 R
1899 1919 1.160137 GATGCACCACACTCTTGTCC 58.840 55.000 0.00 0.0 31.66 4.02 R
2013 2033 2.008329 CTCTCAGCATTCAACCTGCTC 58.992 52.381 0.00 0.0 46.79 4.26 R
3138 3166 0.104120 GCGGCCCAAGTGTTTCTTTT 59.896 50.000 0.00 0.0 33.63 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.261180 ACGCATGCACTATTTATATGATATACC 57.739 33.333 19.57 0.00 0.00 2.73
27 28 9.260002 CGCATGCACTATTTATATGATATACCA 57.740 33.333 19.57 0.00 0.00 3.25
41 42 6.698008 TGATATACCAAGCAGTGAAAATGG 57.302 37.500 0.00 0.00 37.19 3.16
42 43 6.422333 TGATATACCAAGCAGTGAAAATGGA 58.578 36.000 9.90 0.00 35.16 3.41
43 44 7.062322 TGATATACCAAGCAGTGAAAATGGAT 58.938 34.615 9.90 3.91 35.16 3.41
44 45 7.560991 TGATATACCAAGCAGTGAAAATGGATT 59.439 33.333 9.90 1.90 35.16 3.01
45 46 8.995027 ATATACCAAGCAGTGAAAATGGATTA 57.005 30.769 9.90 3.51 35.16 1.75
46 47 5.391312 ACCAAGCAGTGAAAATGGATTAC 57.609 39.130 9.90 0.00 35.16 1.89
47 48 5.079643 ACCAAGCAGTGAAAATGGATTACT 58.920 37.500 9.90 0.00 35.16 2.24
48 49 6.245408 ACCAAGCAGTGAAAATGGATTACTA 58.755 36.000 9.90 0.00 35.16 1.82
49 50 6.375455 ACCAAGCAGTGAAAATGGATTACTAG 59.625 38.462 9.90 0.00 35.16 2.57
50 51 6.599244 CCAAGCAGTGAAAATGGATTACTAGA 59.401 38.462 0.00 0.00 32.82 2.43
51 52 7.121168 CCAAGCAGTGAAAATGGATTACTAGAA 59.879 37.037 0.00 0.00 32.82 2.10
52 53 7.856145 AGCAGTGAAAATGGATTACTAGAAG 57.144 36.000 0.00 0.00 28.90 2.85
53 54 7.398024 AGCAGTGAAAATGGATTACTAGAAGT 58.602 34.615 0.00 0.00 28.90 3.01
54 55 7.335422 AGCAGTGAAAATGGATTACTAGAAGTG 59.665 37.037 0.00 0.00 28.90 3.16
55 56 7.334421 GCAGTGAAAATGGATTACTAGAAGTGA 59.666 37.037 0.00 0.00 28.90 3.41
56 57 9.219603 CAGTGAAAATGGATTACTAGAAGTGAA 57.780 33.333 0.00 0.00 0.00 3.18
57 58 9.793259 AGTGAAAATGGATTACTAGAAGTGAAA 57.207 29.630 0.00 0.00 0.00 2.69
61 62 9.588096 AAAATGGATTACTAGAAGTGAAAAGGT 57.412 29.630 0.00 0.00 0.00 3.50
62 63 8.794335 AATGGATTACTAGAAGTGAAAAGGTC 57.206 34.615 0.00 0.00 0.00 3.85
63 64 7.554959 TGGATTACTAGAAGTGAAAAGGTCT 57.445 36.000 0.00 0.00 0.00 3.85
64 65 7.386851 TGGATTACTAGAAGTGAAAAGGTCTG 58.613 38.462 0.00 0.00 0.00 3.51
65 66 7.234782 TGGATTACTAGAAGTGAAAAGGTCTGA 59.765 37.037 0.00 0.00 0.00 3.27
66 67 8.095169 GGATTACTAGAAGTGAAAAGGTCTGAA 58.905 37.037 0.00 0.00 0.00 3.02
67 68 9.660180 GATTACTAGAAGTGAAAAGGTCTGAAT 57.340 33.333 0.00 0.00 0.00 2.57
69 70 9.924650 TTACTAGAAGTGAAAAGGTCTGAATAC 57.075 33.333 0.00 0.00 0.00 1.89
70 71 7.091443 ACTAGAAGTGAAAAGGTCTGAATACG 58.909 38.462 0.00 0.00 0.00 3.06
71 72 6.097915 AGAAGTGAAAAGGTCTGAATACGA 57.902 37.500 0.00 0.00 0.00 3.43
72 73 6.522054 AGAAGTGAAAAGGTCTGAATACGAA 58.478 36.000 0.00 0.00 0.00 3.85
73 74 6.647067 AGAAGTGAAAAGGTCTGAATACGAAG 59.353 38.462 0.00 0.00 0.00 3.79
74 75 4.691216 AGTGAAAAGGTCTGAATACGAAGC 59.309 41.667 0.00 0.00 0.00 3.86
75 76 4.451096 GTGAAAAGGTCTGAATACGAAGCA 59.549 41.667 0.00 0.00 0.00 3.91
76 77 5.122396 GTGAAAAGGTCTGAATACGAAGCAT 59.878 40.000 0.00 0.00 0.00 3.79
77 78 5.122239 TGAAAAGGTCTGAATACGAAGCATG 59.878 40.000 0.00 0.00 0.00 4.06
78 79 3.895232 AGGTCTGAATACGAAGCATGT 57.105 42.857 0.00 0.00 0.00 3.21
79 80 5.339008 AAGGTCTGAATACGAAGCATGTA 57.661 39.130 0.00 0.00 0.00 2.29
80 81 5.339008 AGGTCTGAATACGAAGCATGTAA 57.661 39.130 0.00 0.00 0.00 2.41
81 82 5.918608 AGGTCTGAATACGAAGCATGTAAT 58.081 37.500 0.00 0.00 0.00 1.89
82 83 7.050970 AGGTCTGAATACGAAGCATGTAATA 57.949 36.000 0.00 0.00 0.00 0.98
83 84 7.671302 AGGTCTGAATACGAAGCATGTAATAT 58.329 34.615 0.00 0.00 0.00 1.28
84 85 8.803235 AGGTCTGAATACGAAGCATGTAATATA 58.197 33.333 0.00 0.00 0.00 0.86
85 86 9.077674 GGTCTGAATACGAAGCATGTAATATAG 57.922 37.037 0.00 0.00 0.00 1.31
86 87 9.627395 GTCTGAATACGAAGCATGTAATATAGT 57.373 33.333 0.00 0.00 0.00 2.12
87 88 9.626045 TCTGAATACGAAGCATGTAATATAGTG 57.374 33.333 0.00 0.00 0.00 2.74
88 89 9.626045 CTGAATACGAAGCATGTAATATAGTGA 57.374 33.333 0.00 0.00 0.00 3.41
89 90 9.626045 TGAATACGAAGCATGTAATATAGTGAG 57.374 33.333 0.00 0.00 0.00 3.51
90 91 9.627395 GAATACGAAGCATGTAATATAGTGAGT 57.373 33.333 0.00 0.00 0.00 3.41
91 92 8.972262 ATACGAAGCATGTAATATAGTGAGTG 57.028 34.615 0.00 0.00 0.00 3.51
92 93 6.216569 ACGAAGCATGTAATATAGTGAGTGG 58.783 40.000 0.00 0.00 0.00 4.00
93 94 5.635280 CGAAGCATGTAATATAGTGAGTGGG 59.365 44.000 0.00 0.00 0.00 4.61
94 95 6.516693 CGAAGCATGTAATATAGTGAGTGGGA 60.517 42.308 0.00 0.00 0.00 4.37
95 96 6.747414 AGCATGTAATATAGTGAGTGGGAA 57.253 37.500 0.00 0.00 0.00 3.97
96 97 7.321717 AGCATGTAATATAGTGAGTGGGAAT 57.678 36.000 0.00 0.00 0.00 3.01
97 98 7.390027 AGCATGTAATATAGTGAGTGGGAATC 58.610 38.462 0.00 0.00 0.00 2.52
98 99 6.595716 GCATGTAATATAGTGAGTGGGAATCC 59.404 42.308 0.00 0.00 0.00 3.01
99 100 6.681729 TGTAATATAGTGAGTGGGAATCCC 57.318 41.667 12.39 12.39 45.71 3.85
110 111 1.986882 GGGAATCCCAATGCTAGTGG 58.013 55.000 14.67 0.00 44.65 4.00
111 112 1.494721 GGGAATCCCAATGCTAGTGGA 59.505 52.381 14.67 0.00 44.65 4.02
112 113 2.108952 GGGAATCCCAATGCTAGTGGAT 59.891 50.000 14.67 0.00 44.65 3.41
113 114 3.152341 GGAATCCCAATGCTAGTGGATG 58.848 50.000 4.51 0.00 37.66 3.51
114 115 2.965671 ATCCCAATGCTAGTGGATGG 57.034 50.000 4.51 0.11 38.54 3.51
115 116 0.846015 TCCCAATGCTAGTGGATGGG 59.154 55.000 15.03 15.03 38.54 4.00
116 117 0.846015 CCCAATGCTAGTGGATGGGA 59.154 55.000 15.75 0.00 37.29 4.37
117 118 1.202855 CCCAATGCTAGTGGATGGGAG 60.203 57.143 15.75 0.00 37.29 4.30
118 119 1.202855 CCAATGCTAGTGGATGGGAGG 60.203 57.143 0.00 0.00 37.29 4.30
119 120 1.143813 AATGCTAGTGGATGGGAGGG 58.856 55.000 0.00 0.00 0.00 4.30
120 121 0.268869 ATGCTAGTGGATGGGAGGGA 59.731 55.000 0.00 0.00 0.00 4.20
121 122 0.268869 TGCTAGTGGATGGGAGGGAT 59.731 55.000 0.00 0.00 0.00 3.85
122 123 1.345422 TGCTAGTGGATGGGAGGGATT 60.345 52.381 0.00 0.00 0.00 3.01
123 124 2.090210 TGCTAGTGGATGGGAGGGATTA 60.090 50.000 0.00 0.00 0.00 1.75
124 125 2.303311 GCTAGTGGATGGGAGGGATTAC 59.697 54.545 0.00 0.00 0.00 1.89
125 126 2.587060 AGTGGATGGGAGGGATTACA 57.413 50.000 0.00 0.00 0.00 2.41
126 127 2.412591 AGTGGATGGGAGGGATTACAG 58.587 52.381 0.00 0.00 0.00 2.74
127 128 2.127708 GTGGATGGGAGGGATTACAGT 58.872 52.381 0.00 0.00 0.00 3.55
128 129 2.126882 TGGATGGGAGGGATTACAGTG 58.873 52.381 0.00 0.00 0.00 3.66
129 130 1.421646 GGATGGGAGGGATTACAGTGG 59.578 57.143 0.00 0.00 0.00 4.00
130 131 2.408565 GATGGGAGGGATTACAGTGGA 58.591 52.381 0.00 0.00 0.00 4.02
131 132 2.587060 TGGGAGGGATTACAGTGGAT 57.413 50.000 0.00 0.00 0.00 3.41
132 133 2.126882 TGGGAGGGATTACAGTGGATG 58.873 52.381 0.00 0.00 0.00 3.51
133 134 2.127708 GGGAGGGATTACAGTGGATGT 58.872 52.381 0.00 0.00 46.45 3.06
134 135 3.311028 TGGGAGGGATTACAGTGGATGTA 60.311 47.826 0.00 0.00 43.66 2.29
135 136 3.910627 GGGAGGGATTACAGTGGATGTAT 59.089 47.826 0.00 0.00 43.87 2.29
136 137 4.351111 GGGAGGGATTACAGTGGATGTATT 59.649 45.833 0.00 0.00 43.87 1.89
137 138 5.513267 GGGAGGGATTACAGTGGATGTATTC 60.513 48.000 0.00 0.00 43.87 1.75
138 139 5.308237 GGAGGGATTACAGTGGATGTATTCT 59.692 44.000 0.00 0.00 43.87 2.40
139 140 6.426646 AGGGATTACAGTGGATGTATTCTC 57.573 41.667 0.00 6.02 43.87 2.87
140 141 5.308237 AGGGATTACAGTGGATGTATTCTCC 59.692 44.000 0.00 7.32 42.48 3.71
141 142 5.230942 GGATTACAGTGGATGTATTCTCCG 58.769 45.833 0.00 0.00 43.87 4.63
142 143 5.010719 GGATTACAGTGGATGTATTCTCCGA 59.989 44.000 0.00 0.00 43.87 4.55
143 144 5.515797 TTACAGTGGATGTATTCTCCGAG 57.484 43.478 0.00 0.00 43.87 4.63
144 145 3.632333 ACAGTGGATGTATTCTCCGAGA 58.368 45.455 0.00 0.00 41.60 4.04
145 146 3.634448 ACAGTGGATGTATTCTCCGAGAG 59.366 47.826 0.00 0.00 41.60 3.20
146 147 2.625790 AGTGGATGTATTCTCCGAGAGC 59.374 50.000 0.00 0.00 35.41 4.09
147 148 2.625790 GTGGATGTATTCTCCGAGAGCT 59.374 50.000 0.00 0.00 35.41 4.09
148 149 2.887783 TGGATGTATTCTCCGAGAGCTC 59.112 50.000 5.27 5.27 35.41 4.09
149 150 2.230266 GGATGTATTCTCCGAGAGCTCC 59.770 54.545 10.93 0.68 0.00 4.70
150 151 2.437085 TGTATTCTCCGAGAGCTCCA 57.563 50.000 10.93 0.00 0.00 3.86
151 152 2.735151 TGTATTCTCCGAGAGCTCCAA 58.265 47.619 10.93 0.00 0.00 3.53
152 153 3.300388 TGTATTCTCCGAGAGCTCCAAT 58.700 45.455 10.93 2.37 0.00 3.16
153 154 2.906691 ATTCTCCGAGAGCTCCAATG 57.093 50.000 10.93 0.00 0.00 2.82
154 155 0.176680 TTCTCCGAGAGCTCCAATGC 59.823 55.000 10.93 0.00 0.00 3.56
155 156 0.972471 TCTCCGAGAGCTCCAATGCA 60.972 55.000 10.93 0.00 34.99 3.96
156 157 0.107993 CTCCGAGAGCTCCAATGCAA 60.108 55.000 10.93 0.00 34.99 4.08
157 158 0.543277 TCCGAGAGCTCCAATGCAAT 59.457 50.000 10.93 0.00 34.99 3.56
158 159 1.065199 TCCGAGAGCTCCAATGCAATT 60.065 47.619 10.93 0.00 36.63 2.32
159 160 1.747355 CCGAGAGCTCCAATGCAATTT 59.253 47.619 10.93 0.00 31.22 1.82
160 161 2.223433 CCGAGAGCTCCAATGCAATTTC 60.223 50.000 10.93 0.00 31.22 2.17
161 162 2.421073 CGAGAGCTCCAATGCAATTTCA 59.579 45.455 10.93 0.00 31.22 2.69
162 163 3.730061 CGAGAGCTCCAATGCAATTTCAC 60.730 47.826 10.93 0.00 31.22 3.18
163 164 2.163010 AGAGCTCCAATGCAATTTCACG 59.837 45.455 10.93 0.00 31.22 4.35
164 165 0.994263 GCTCCAATGCAATTTCACGC 59.006 50.000 0.00 0.00 31.22 5.34
165 166 1.632422 CTCCAATGCAATTTCACGCC 58.368 50.000 0.00 0.00 31.22 5.68
166 167 0.246086 TCCAATGCAATTTCACGCCC 59.754 50.000 0.00 0.00 31.22 6.13
167 168 0.037512 CCAATGCAATTTCACGCCCA 60.038 50.000 0.00 0.00 31.22 5.36
168 169 1.607509 CCAATGCAATTTCACGCCCAA 60.608 47.619 0.00 0.00 31.22 4.12
169 170 1.460359 CAATGCAATTTCACGCCCAAC 59.540 47.619 0.00 0.00 31.22 3.77
170 171 0.678395 ATGCAATTTCACGCCCAACA 59.322 45.000 0.00 0.00 0.00 3.33
171 172 0.249238 TGCAATTTCACGCCCAACAC 60.249 50.000 0.00 0.00 0.00 3.32
172 173 0.249238 GCAATTTCACGCCCAACACA 60.249 50.000 0.00 0.00 0.00 3.72
173 174 1.804372 GCAATTTCACGCCCAACACAA 60.804 47.619 0.00 0.00 0.00 3.33
174 175 1.857837 CAATTTCACGCCCAACACAAC 59.142 47.619 0.00 0.00 0.00 3.32
175 176 0.387565 ATTTCACGCCCAACACAACC 59.612 50.000 0.00 0.00 0.00 3.77
176 177 0.681564 TTTCACGCCCAACACAACCT 60.682 50.000 0.00 0.00 0.00 3.50
177 178 0.681564 TTCACGCCCAACACAACCTT 60.682 50.000 0.00 0.00 0.00 3.50
178 179 0.681564 TCACGCCCAACACAACCTTT 60.682 50.000 0.00 0.00 0.00 3.11
179 180 0.248866 CACGCCCAACACAACCTTTC 60.249 55.000 0.00 0.00 0.00 2.62
180 181 0.395173 ACGCCCAACACAACCTTTCT 60.395 50.000 0.00 0.00 0.00 2.52
181 182 0.310854 CGCCCAACACAACCTTTCTC 59.689 55.000 0.00 0.00 0.00 2.87
182 183 0.673985 GCCCAACACAACCTTTCTCC 59.326 55.000 0.00 0.00 0.00 3.71
183 184 2.026905 GCCCAACACAACCTTTCTCCA 61.027 52.381 0.00 0.00 0.00 3.86
184 185 2.383855 CCCAACACAACCTTTCTCCAA 58.616 47.619 0.00 0.00 0.00 3.53
185 186 2.100749 CCCAACACAACCTTTCTCCAAC 59.899 50.000 0.00 0.00 0.00 3.77
186 187 3.023832 CCAACACAACCTTTCTCCAACT 58.976 45.455 0.00 0.00 0.00 3.16
187 188 4.204012 CCAACACAACCTTTCTCCAACTA 58.796 43.478 0.00 0.00 0.00 2.24
188 189 4.036380 CCAACACAACCTTTCTCCAACTAC 59.964 45.833 0.00 0.00 0.00 2.73
189 190 4.772886 ACACAACCTTTCTCCAACTACT 57.227 40.909 0.00 0.00 0.00 2.57
190 191 5.881923 ACACAACCTTTCTCCAACTACTA 57.118 39.130 0.00 0.00 0.00 1.82
191 192 6.435292 ACACAACCTTTCTCCAACTACTAT 57.565 37.500 0.00 0.00 0.00 2.12
192 193 6.838382 ACACAACCTTTCTCCAACTACTATT 58.162 36.000 0.00 0.00 0.00 1.73
193 194 6.935208 ACACAACCTTTCTCCAACTACTATTC 59.065 38.462 0.00 0.00 0.00 1.75
194 195 7.162082 CACAACCTTTCTCCAACTACTATTCT 58.838 38.462 0.00 0.00 0.00 2.40
195 196 7.661847 CACAACCTTTCTCCAACTACTATTCTT 59.338 37.037 0.00 0.00 0.00 2.52
196 197 7.878644 ACAACCTTTCTCCAACTACTATTCTTC 59.121 37.037 0.00 0.00 0.00 2.87
197 198 7.800300 ACCTTTCTCCAACTACTATTCTTCT 57.200 36.000 0.00 0.00 0.00 2.85
198 199 7.842982 ACCTTTCTCCAACTACTATTCTTCTC 58.157 38.462 0.00 0.00 0.00 2.87
199 200 7.093245 ACCTTTCTCCAACTACTATTCTTCTCC 60.093 40.741 0.00 0.00 0.00 3.71
200 201 7.125053 CCTTTCTCCAACTACTATTCTTCTCCT 59.875 40.741 0.00 0.00 0.00 3.69
201 202 9.191479 CTTTCTCCAACTACTATTCTTCTCCTA 57.809 37.037 0.00 0.00 0.00 2.94
202 203 8.522542 TTCTCCAACTACTATTCTTCTCCTAC 57.477 38.462 0.00 0.00 0.00 3.18
203 204 7.061688 TCTCCAACTACTATTCTTCTCCTACC 58.938 42.308 0.00 0.00 0.00 3.18
204 205 6.982899 TCCAACTACTATTCTTCTCCTACCT 58.017 40.000 0.00 0.00 0.00 3.08
205 206 7.420029 TCCAACTACTATTCTTCTCCTACCTT 58.580 38.462 0.00 0.00 0.00 3.50
206 207 7.899709 TCCAACTACTATTCTTCTCCTACCTTT 59.100 37.037 0.00 0.00 0.00 3.11
207 208 7.982354 CCAACTACTATTCTTCTCCTACCTTTG 59.018 40.741 0.00 0.00 0.00 2.77
208 209 7.114866 ACTACTATTCTTCTCCTACCTTTGC 57.885 40.000 0.00 0.00 0.00 3.68
209 210 6.898521 ACTACTATTCTTCTCCTACCTTTGCT 59.101 38.462 0.00 0.00 0.00 3.91
210 211 6.228616 ACTATTCTTCTCCTACCTTTGCTC 57.771 41.667 0.00 0.00 0.00 4.26
211 212 5.961421 ACTATTCTTCTCCTACCTTTGCTCT 59.039 40.000 0.00 0.00 0.00 4.09
212 213 7.126733 ACTATTCTTCTCCTACCTTTGCTCTA 58.873 38.462 0.00 0.00 0.00 2.43
213 214 7.787424 ACTATTCTTCTCCTACCTTTGCTCTAT 59.213 37.037 0.00 0.00 0.00 1.98
214 215 9.303116 CTATTCTTCTCCTACCTTTGCTCTATA 57.697 37.037 0.00 0.00 0.00 1.31
215 216 6.963083 TCTTCTCCTACCTTTGCTCTATAC 57.037 41.667 0.00 0.00 0.00 1.47
216 217 6.674573 TCTTCTCCTACCTTTGCTCTATACT 58.325 40.000 0.00 0.00 0.00 2.12
217 218 7.126733 TCTTCTCCTACCTTTGCTCTATACTT 58.873 38.462 0.00 0.00 0.00 2.24
218 219 7.620094 TCTTCTCCTACCTTTGCTCTATACTTT 59.380 37.037 0.00 0.00 0.00 2.66
219 220 7.349412 TCTCCTACCTTTGCTCTATACTTTC 57.651 40.000 0.00 0.00 0.00 2.62
220 221 6.895756 TCTCCTACCTTTGCTCTATACTTTCA 59.104 38.462 0.00 0.00 0.00 2.69
221 222 6.875076 TCCTACCTTTGCTCTATACTTTCAC 58.125 40.000 0.00 0.00 0.00 3.18
222 223 6.439375 TCCTACCTTTGCTCTATACTTTCACA 59.561 38.462 0.00 0.00 0.00 3.58
223 224 7.125811 TCCTACCTTTGCTCTATACTTTCACAT 59.874 37.037 0.00 0.00 0.00 3.21
224 225 6.992063 ACCTTTGCTCTATACTTTCACATG 57.008 37.500 0.00 0.00 0.00 3.21
225 226 6.711277 ACCTTTGCTCTATACTTTCACATGA 58.289 36.000 0.00 0.00 0.00 3.07
226 227 7.168219 ACCTTTGCTCTATACTTTCACATGAA 58.832 34.615 0.00 0.00 0.00 2.57
227 228 7.335422 ACCTTTGCTCTATACTTTCACATGAAG 59.665 37.037 0.00 0.00 35.21 3.02
228 229 7.335422 CCTTTGCTCTATACTTTCACATGAAGT 59.665 37.037 0.00 1.13 35.21 3.01
229 230 9.371136 CTTTGCTCTATACTTTCACATGAAGTA 57.629 33.333 0.00 3.69 35.21 2.24
230 231 9.890629 TTTGCTCTATACTTTCACATGAAGTAT 57.109 29.630 17.56 17.56 35.21 2.12
231 232 9.534565 TTGCTCTATACTTTCACATGAAGTATC 57.465 33.333 17.15 7.81 35.21 2.24
232 233 8.918116 TGCTCTATACTTTCACATGAAGTATCT 58.082 33.333 17.15 3.88 35.21 1.98
233 234 9.405587 GCTCTATACTTTCACATGAAGTATCTC 57.594 37.037 17.15 6.32 35.21 2.75
239 240 8.908786 ACTTTCACATGAAGTATCTCAAGAAA 57.091 30.769 0.00 0.00 35.21 2.52
240 241 9.512588 ACTTTCACATGAAGTATCTCAAGAAAT 57.487 29.630 0.00 0.00 35.21 2.17
254 255 8.697507 ATCTCAAGAAATAAGAACTGTTTGGT 57.302 30.769 0.00 0.00 0.00 3.67
255 256 8.519799 TCTCAAGAAATAAGAACTGTTTGGTT 57.480 30.769 0.00 0.00 0.00 3.67
256 257 8.966868 TCTCAAGAAATAAGAACTGTTTGGTTT 58.033 29.630 0.00 0.00 0.00 3.27
257 258 9.237846 CTCAAGAAATAAGAACTGTTTGGTTTC 57.762 33.333 0.00 4.44 0.00 2.78
258 259 8.744652 TCAAGAAATAAGAACTGTTTGGTTTCA 58.255 29.630 16.43 2.82 0.00 2.69
259 260 9.533253 CAAGAAATAAGAACTGTTTGGTTTCAT 57.467 29.630 16.43 8.01 0.00 2.57
261 262 9.750125 AGAAATAAGAACTGTTTGGTTTCATTC 57.250 29.630 16.43 7.30 0.00 2.67
262 263 9.528018 GAAATAAGAACTGTTTGGTTTCATTCA 57.472 29.630 0.00 0.00 0.00 2.57
263 264 9.883142 AAATAAGAACTGTTTGGTTTCATTCAA 57.117 25.926 0.00 0.00 0.00 2.69
264 265 8.871686 ATAAGAACTGTTTGGTTTCATTCAAC 57.128 30.769 0.00 0.00 0.00 3.18
265 266 6.279513 AGAACTGTTTGGTTTCATTCAACA 57.720 33.333 0.00 0.00 0.00 3.33
266 267 6.332630 AGAACTGTTTGGTTTCATTCAACAG 58.667 36.000 8.46 8.46 33.06 3.16
267 268 5.913137 ACTGTTTGGTTTCATTCAACAGA 57.087 34.783 15.41 0.00 32.18 3.41
268 269 6.279513 ACTGTTTGGTTTCATTCAACAGAA 57.720 33.333 15.41 0.00 32.18 3.02
269 270 6.332630 ACTGTTTGGTTTCATTCAACAGAAG 58.667 36.000 15.41 0.00 32.18 2.85
270 271 5.659463 TGTTTGGTTTCATTCAACAGAAGG 58.341 37.500 0.00 0.00 0.00 3.46
271 272 5.420421 TGTTTGGTTTCATTCAACAGAAGGA 59.580 36.000 0.00 0.00 30.98 3.36
272 273 6.071108 TGTTTGGTTTCATTCAACAGAAGGAA 60.071 34.615 1.70 1.70 39.45 3.36
273 274 5.772825 TGGTTTCATTCAACAGAAGGAAG 57.227 39.130 5.62 0.00 41.35 3.46
274 275 5.445069 TGGTTTCATTCAACAGAAGGAAGA 58.555 37.500 5.62 0.00 41.35 2.87
275 276 5.532406 TGGTTTCATTCAACAGAAGGAAGAG 59.468 40.000 5.62 0.00 41.35 2.85
276 277 5.456265 GTTTCATTCAACAGAAGGAAGAGC 58.544 41.667 5.62 0.00 41.35 4.09
277 278 4.630644 TCATTCAACAGAAGGAAGAGCT 57.369 40.909 0.00 0.00 30.04 4.09
278 279 4.978099 TCATTCAACAGAAGGAAGAGCTT 58.022 39.130 0.00 0.00 30.04 3.74
279 280 4.999950 TCATTCAACAGAAGGAAGAGCTTC 59.000 41.667 1.62 1.62 38.80 3.86
280 281 4.696479 TTCAACAGAAGGAAGAGCTTCT 57.304 40.909 9.82 0.00 40.18 2.85
281 282 4.696479 TCAACAGAAGGAAGAGCTTCTT 57.304 40.909 9.82 0.00 39.87 2.52
299 300 5.577945 GCTTCTTCAGCTATCATAGATCTGC 59.422 44.000 5.18 0.00 46.27 4.26
300 301 6.661304 TTCTTCAGCTATCATAGATCTGCA 57.339 37.500 5.18 0.00 0.00 4.41
301 302 6.854091 TCTTCAGCTATCATAGATCTGCAT 57.146 37.500 5.18 0.00 0.00 3.96
302 303 6.865411 TCTTCAGCTATCATAGATCTGCATC 58.135 40.000 5.18 0.00 0.00 3.91
303 304 6.664384 TCTTCAGCTATCATAGATCTGCATCT 59.336 38.462 5.18 0.00 42.48 2.90
304 305 6.854091 TCAGCTATCATAGATCTGCATCTT 57.146 37.500 5.18 0.00 40.18 2.40
305 306 7.951347 TCAGCTATCATAGATCTGCATCTTA 57.049 36.000 5.18 0.00 40.18 2.10
306 307 8.536340 TCAGCTATCATAGATCTGCATCTTAT 57.464 34.615 5.18 0.00 40.18 1.73
307 308 8.631797 TCAGCTATCATAGATCTGCATCTTATC 58.368 37.037 5.18 0.00 40.18 1.75
308 309 8.635328 CAGCTATCATAGATCTGCATCTTATCT 58.365 37.037 5.18 1.33 40.18 1.98
309 310 9.865152 AGCTATCATAGATCTGCATCTTATCTA 57.135 33.333 5.18 9.37 40.18 1.98
329 330 9.826574 TTATCTAAAAGTTATATTGTCCGCACT 57.173 29.630 0.00 0.00 0.00 4.40
331 332 8.638685 TCTAAAAGTTATATTGTCCGCACTAC 57.361 34.615 0.00 0.00 0.00 2.73
332 333 8.252417 TCTAAAAGTTATATTGTCCGCACTACA 58.748 33.333 0.00 0.00 0.00 2.74
333 334 7.859325 AAAAGTTATATTGTCCGCACTACAT 57.141 32.000 0.00 0.00 0.00 2.29
334 335 7.859325 AAAGTTATATTGTCCGCACTACATT 57.141 32.000 0.00 0.00 0.00 2.71
335 336 7.478520 AAGTTATATTGTCCGCACTACATTC 57.521 36.000 0.00 0.00 0.00 2.67
336 337 6.578944 AGTTATATTGTCCGCACTACATTCA 58.421 36.000 0.00 0.00 0.00 2.57
337 338 6.479001 AGTTATATTGTCCGCACTACATTCAC 59.521 38.462 0.00 0.00 0.00 3.18
338 339 2.535012 TTGTCCGCACTACATTCACA 57.465 45.000 0.00 0.00 0.00 3.58
339 340 2.535012 TGTCCGCACTACATTCACAA 57.465 45.000 0.00 0.00 0.00 3.33
340 341 2.412870 TGTCCGCACTACATTCACAAG 58.587 47.619 0.00 0.00 0.00 3.16
341 342 1.732259 GTCCGCACTACATTCACAAGG 59.268 52.381 0.00 0.00 0.00 3.61
342 343 1.346395 TCCGCACTACATTCACAAGGT 59.654 47.619 0.00 0.00 0.00 3.50
343 344 2.563620 TCCGCACTACATTCACAAGGTA 59.436 45.455 0.00 0.00 0.00 3.08
344 345 3.196901 TCCGCACTACATTCACAAGGTAT 59.803 43.478 0.00 0.00 0.00 2.73
345 346 3.309682 CCGCACTACATTCACAAGGTATG 59.690 47.826 0.00 0.00 0.00 2.39
346 347 3.309682 CGCACTACATTCACAAGGTATGG 59.690 47.826 0.00 0.00 0.00 2.74
347 348 3.065371 GCACTACATTCACAAGGTATGGC 59.935 47.826 0.00 0.00 0.00 4.40
348 349 4.517285 CACTACATTCACAAGGTATGGCT 58.483 43.478 0.00 0.00 0.00 4.75
349 350 4.943705 CACTACATTCACAAGGTATGGCTT 59.056 41.667 0.00 0.00 0.00 4.35
350 351 5.415701 CACTACATTCACAAGGTATGGCTTT 59.584 40.000 0.00 0.00 0.00 3.51
351 352 4.789012 ACATTCACAAGGTATGGCTTTG 57.211 40.909 0.00 0.00 39.70 2.77
352 353 4.151883 ACATTCACAAGGTATGGCTTTGT 58.848 39.130 0.00 0.00 46.42 2.83
353 354 4.588528 ACATTCACAAGGTATGGCTTTGTT 59.411 37.500 0.00 0.00 43.60 2.83
354 355 5.070313 ACATTCACAAGGTATGGCTTTGTTT 59.930 36.000 0.00 0.00 43.60 2.83
355 356 4.846779 TCACAAGGTATGGCTTTGTTTC 57.153 40.909 0.00 0.00 43.60 2.78
356 357 4.469657 TCACAAGGTATGGCTTTGTTTCT 58.530 39.130 0.00 0.00 43.60 2.52
357 358 4.892934 TCACAAGGTATGGCTTTGTTTCTT 59.107 37.500 0.00 0.00 43.60 2.52
358 359 6.065374 TCACAAGGTATGGCTTTGTTTCTTA 58.935 36.000 0.00 0.00 43.60 2.10
359 360 6.719370 TCACAAGGTATGGCTTTGTTTCTTAT 59.281 34.615 0.00 0.00 43.60 1.73
360 361 7.232534 TCACAAGGTATGGCTTTGTTTCTTATT 59.767 33.333 0.00 0.00 43.60 1.40
361 362 7.542130 CACAAGGTATGGCTTTGTTTCTTATTC 59.458 37.037 0.00 0.00 43.60 1.75
362 363 7.451566 ACAAGGTATGGCTTTGTTTCTTATTCT 59.548 33.333 0.00 0.00 43.60 2.40
363 364 8.306761 CAAGGTATGGCTTTGTTTCTTATTCTT 58.693 33.333 0.00 0.00 30.57 2.52
364 365 9.528489 AAGGTATGGCTTTGTTTCTTATTCTTA 57.472 29.630 0.00 0.00 0.00 2.10
365 366 9.700831 AGGTATGGCTTTGTTTCTTATTCTTAT 57.299 29.630 0.00 0.00 0.00 1.73
366 367 9.736023 GGTATGGCTTTGTTTCTTATTCTTATG 57.264 33.333 0.00 0.00 0.00 1.90
370 371 8.736244 TGGCTTTGTTTCTTATTCTTATGTACC 58.264 33.333 0.00 0.00 0.00 3.34
371 372 8.957466 GGCTTTGTTTCTTATTCTTATGTACCT 58.043 33.333 0.00 0.00 0.00 3.08
372 373 9.989869 GCTTTGTTTCTTATTCTTATGTACCTC 57.010 33.333 0.00 0.00 0.00 3.85
409 410 9.832445 TCTAGTTATATGAGTTCCAAAATGTCC 57.168 33.333 0.00 0.00 0.00 4.02
410 411 9.613428 CTAGTTATATGAGTTCCAAAATGTCCA 57.387 33.333 0.00 0.00 0.00 4.02
411 412 8.511604 AGTTATATGAGTTCCAAAATGTCCAG 57.488 34.615 0.00 0.00 0.00 3.86
412 413 8.328758 AGTTATATGAGTTCCAAAATGTCCAGA 58.671 33.333 0.00 0.00 0.00 3.86
413 414 9.125026 GTTATATGAGTTCCAAAATGTCCAGAT 57.875 33.333 0.00 0.00 0.00 2.90
416 417 7.578310 ATGAGTTCCAAAATGTCCAGATATG 57.422 36.000 0.00 0.00 0.00 1.78
417 418 6.484288 TGAGTTCCAAAATGTCCAGATATGT 58.516 36.000 0.00 0.00 0.00 2.29
418 419 6.947733 TGAGTTCCAAAATGTCCAGATATGTT 59.052 34.615 0.00 0.00 0.00 2.71
419 420 8.106462 TGAGTTCCAAAATGTCCAGATATGTTA 58.894 33.333 0.00 0.00 0.00 2.41
420 421 8.281212 AGTTCCAAAATGTCCAGATATGTTAC 57.719 34.615 0.00 0.00 0.00 2.50
421 422 8.109634 AGTTCCAAAATGTCCAGATATGTTACT 58.890 33.333 0.00 0.00 0.00 2.24
422 423 7.864108 TCCAAAATGTCCAGATATGTTACTG 57.136 36.000 0.00 0.00 0.00 2.74
433 434 8.561738 CCAGATATGTTACTGGTACTTTGTTT 57.438 34.615 0.00 0.00 45.82 2.83
434 435 8.450964 CCAGATATGTTACTGGTACTTTGTTTG 58.549 37.037 0.00 0.00 45.82 2.93
435 436 8.999431 CAGATATGTTACTGGTACTTTGTTTGT 58.001 33.333 0.00 0.00 0.00 2.83
440 441 8.647143 TGTTACTGGTACTTTGTTTGTAGTAC 57.353 34.615 0.00 0.00 43.74 2.73
448 449 6.877611 ACTTTGTTTGTAGTACCATTCAGG 57.122 37.500 0.00 0.00 45.67 3.86
487 488 6.704289 ATCCATGTTTTGATGTATCCTGTG 57.296 37.500 0.00 0.00 0.00 3.66
488 489 5.569355 TCCATGTTTTGATGTATCCTGTGT 58.431 37.500 0.00 0.00 0.00 3.72
489 490 6.009589 TCCATGTTTTGATGTATCCTGTGTT 58.990 36.000 0.00 0.00 0.00 3.32
490 491 7.171653 TCCATGTTTTGATGTATCCTGTGTTA 58.828 34.615 0.00 0.00 0.00 2.41
491 492 7.667635 TCCATGTTTTGATGTATCCTGTGTTAA 59.332 33.333 0.00 0.00 0.00 2.01
492 493 7.970061 CCATGTTTTGATGTATCCTGTGTTAAG 59.030 37.037 0.00 0.00 0.00 1.85
493 494 8.729756 CATGTTTTGATGTATCCTGTGTTAAGA 58.270 33.333 0.00 0.00 0.00 2.10
494 495 8.322906 TGTTTTGATGTATCCTGTGTTAAGAG 57.677 34.615 0.00 0.00 0.00 2.85
495 496 7.390440 TGTTTTGATGTATCCTGTGTTAAGAGG 59.610 37.037 0.00 0.00 38.24 3.69
513 514 2.750888 GGTGCGTCGATTTGGAGCC 61.751 63.158 0.00 0.00 0.00 4.70
582 583 3.529948 TGGAAAAAGCCAGCTGGAA 57.470 47.368 37.21 7.29 37.39 3.53
587 588 0.883833 AAAAGCCAGCTGGAATGTCG 59.116 50.000 37.21 8.33 37.39 4.35
592 593 1.746615 CAGCTGGAATGTCGGGTGG 60.747 63.158 5.57 0.00 37.73 4.61
595 596 1.915228 CTGGAATGTCGGGTGGGAT 59.085 57.895 0.00 0.00 0.00 3.85
633 634 3.838244 ACCATGTCAATACGGTAGCAT 57.162 42.857 0.00 0.00 0.00 3.79
720 721 1.694639 GTGGACTAGGAACGTTCGTG 58.305 55.000 28.58 20.78 0.00 4.35
723 724 1.337821 GACTAGGAACGTTCGTGCTG 58.662 55.000 28.58 20.57 0.00 4.41
726 727 2.095364 ACTAGGAACGTTCGTGCTGTAG 60.095 50.000 28.58 20.53 0.00 2.74
785 786 2.027745 CCTGGATCAGATAATGGGTCCG 60.028 54.545 0.00 0.00 37.08 4.79
847 848 3.435590 CCCCCATGCGCATGTTAG 58.564 61.111 39.70 29.26 37.11 2.34
946 947 1.739338 ATAGAGTTCGCCGAGGCTGG 61.739 60.000 12.70 0.00 39.32 4.85
951 952 3.291101 TTCGCCGAGGCTGGTGTAC 62.291 63.158 12.70 0.00 40.48 2.90
994 997 3.197790 CCGATGCTTGACCGCCAG 61.198 66.667 0.00 0.00 0.00 4.85
995 998 3.869272 CGATGCTTGACCGCCAGC 61.869 66.667 0.00 0.00 0.00 4.85
1073 1076 1.126846 CGTTTCCGTGCAGATCTGTTC 59.873 52.381 23.38 15.06 0.00 3.18
1112 1115 4.526262 AGACTCGCCTAGATATGCATTCTT 59.474 41.667 3.54 0.00 0.00 2.52
1146 1150 7.563888 TGAGATAATCATTTGAGCCTGAAAG 57.436 36.000 0.00 0.00 31.12 2.62
1148 1152 7.802037 TGAGATAATCATTTGAGCCTGAAAGGT 60.802 37.037 0.00 0.00 45.51 3.50
1194 1198 1.968493 GGGAGGAGTATGCCGACAATA 59.032 52.381 0.00 0.00 0.00 1.90
1212 1216 5.579047 ACAATATTGAACACCCAGATCCAA 58.421 37.500 22.16 0.00 0.00 3.53
1217 1221 1.284785 GAACACCCAGATCCAATCCCA 59.715 52.381 0.00 0.00 0.00 4.37
1240 1244 5.011125 CACTGATGTACCTACTGGATAAGGG 59.989 48.000 0.00 0.00 37.18 3.95
1298 1302 1.703438 CTGCGGCAGCTGAGATGTTC 61.703 60.000 20.43 0.00 43.85 3.18
1315 1319 1.734465 GTTCGGAGATGGTTTGCTCAG 59.266 52.381 0.00 0.00 35.04 3.35
1361 1365 0.809385 GACGTGAGGAATCTCCGACA 59.191 55.000 0.00 0.00 42.75 4.35
1379 1383 1.026718 CAAGGTCTGCCCAATCGACC 61.027 60.000 0.00 0.00 45.88 4.79
1426 1432 3.308473 GGATGGACTAAAAGGTGAGGCTT 60.308 47.826 0.00 0.00 0.00 4.35
1436 1442 5.707066 AAAGGTGAGGCTTCTGAATCTAT 57.293 39.130 0.00 0.00 0.00 1.98
1442 1448 6.995091 GGTGAGGCTTCTGAATCTATTGTTAT 59.005 38.462 0.00 0.00 0.00 1.89
1463 1469 3.192541 TGCCATCGCAAGTATACACAT 57.807 42.857 5.50 0.00 43.74 3.21
1468 1474 5.582269 GCCATCGCAAGTATACACATGATAT 59.418 40.000 5.50 0.00 39.48 1.63
1521 1528 4.586235 AGTGTGGGTGCTGTGGGC 62.586 66.667 0.00 0.00 42.22 5.36
1522 1529 4.586235 GTGTGGGTGCTGTGGGCT 62.586 66.667 0.00 0.00 42.39 5.19
1533 1540 1.180029 CTGTGGGCTGGGAAGAATTG 58.820 55.000 0.00 0.00 0.00 2.32
1639 1652 4.864247 GGTGTTTGTAATCATGATGGTTGC 59.136 41.667 9.46 0.00 0.00 4.17
1672 1686 4.605640 TTGCCTTTGGAAATCAGGAAAG 57.394 40.909 0.00 0.00 0.00 2.62
1682 1696 7.466746 TGGAAATCAGGAAAGAAATGGTTAG 57.533 36.000 0.00 0.00 0.00 2.34
1691 1705 6.943146 AGGAAAGAAATGGTTAGGAGAAAGAC 59.057 38.462 0.00 0.00 0.00 3.01
1697 1711 7.944554 AGAAATGGTTAGGAGAAAGACAATGAA 59.055 33.333 0.00 0.00 0.00 2.57
1700 1714 6.601332 TGGTTAGGAGAAAGACAATGAAAGT 58.399 36.000 0.00 0.00 0.00 2.66
1702 1716 7.228706 TGGTTAGGAGAAAGACAATGAAAGTTC 59.771 37.037 0.00 0.00 0.00 3.01
1747 1761 1.002624 GCGGGGTCCTGTCAATTGA 60.003 57.895 3.38 3.38 0.00 2.57
1751 1765 1.106285 GGGTCCTGTCAATTGATGCC 58.894 55.000 12.12 9.30 0.00 4.40
1757 1771 3.057596 TCCTGTCAATTGATGCCGTTTTC 60.058 43.478 12.12 0.00 0.00 2.29
1776 1790 7.336975 CGTTTTCATGTCTTTCAAACATTTCC 58.663 34.615 0.00 0.00 35.19 3.13
1780 1794 7.053316 TCATGTCTTTCAAACATTTCCACAT 57.947 32.000 0.00 0.00 35.19 3.21
1781 1795 8.175925 TCATGTCTTTCAAACATTTCCACATA 57.824 30.769 0.00 0.00 35.19 2.29
1863 1883 3.131850 TCCATCTAGGATGAGCGCA 57.868 52.632 11.47 0.00 43.07 6.09
1889 1909 4.083110 GGAGCTATCAATGCGCAAATATGT 60.083 41.667 17.11 0.94 35.28 2.29
1899 1919 1.592110 CGCAAATATGTCGAGCAACCG 60.592 52.381 0.00 0.00 0.00 4.44
1929 1949 1.227793 GGTGCATCCTGAGCTAGGC 60.228 63.158 0.00 0.00 46.87 3.93
2013 2033 8.621532 TTGGATTCGGAATAAGATATGGAAAG 57.378 34.615 2.65 0.00 0.00 2.62
2020 2040 6.538263 GGAATAAGATATGGAAAGAGCAGGT 58.462 40.000 0.00 0.00 0.00 4.00
2036 2056 2.877300 GCAGGTTGAATGCTGAGAGGAA 60.877 50.000 0.00 0.00 40.59 3.36
2077 2097 2.341846 ATGTGGTTGTTCGGTGAGTT 57.658 45.000 0.00 0.00 0.00 3.01
2078 2098 1.658994 TGTGGTTGTTCGGTGAGTTC 58.341 50.000 0.00 0.00 0.00 3.01
2079 2099 1.066071 TGTGGTTGTTCGGTGAGTTCA 60.066 47.619 0.00 0.00 0.00 3.18
2084 2104 3.872771 GGTTGTTCGGTGAGTTCACTTTA 59.127 43.478 11.67 0.00 45.73 1.85
2091 2111 6.833342 TCGGTGAGTTCACTTTAAACTTAC 57.167 37.500 11.67 3.19 45.73 2.34
2116 2137 7.819900 ACTGCTAAAATGAGAAGTAGGTTACAG 59.180 37.037 0.00 0.00 33.15 2.74
2143 2165 6.274579 TGAGTTTGGATGCGTATACGAAATA 58.725 36.000 28.66 11.35 43.02 1.40
2184 2207 9.531942 GGAATTAATTCAATGTATCACATGCAA 57.468 29.630 25.55 0.00 36.64 4.08
2392 2415 5.048013 ACCAAAGACTTAATAAGGCAGTTGC 60.048 40.000 8.76 0.00 39.74 4.17
2415 2438 2.612221 GGAGAACAACGTCAACCTAGGG 60.612 54.545 14.81 0.00 0.00 3.53
2466 2489 2.685897 TGGTTCAGTTGAAAAGGTTCCG 59.314 45.455 0.00 0.00 35.58 4.30
2499 2522 3.632145 GGACACTCAGAAACATTTGTGGT 59.368 43.478 2.07 0.00 32.81 4.16
2531 2554 0.307146 GAGCAAGCCGAAGATGATGC 59.693 55.000 0.00 0.00 0.00 3.91
2685 2708 2.589442 TTTGGCGACGTGGTGACC 60.589 61.111 0.00 0.00 0.00 4.02
2706 2729 1.311859 TCGACACCACGTACAGAACT 58.688 50.000 0.00 0.00 34.70 3.01
2869 2893 2.884639 GGACCTGCGCCAAATACAATAT 59.115 45.455 4.18 0.00 0.00 1.28
2871 2895 4.290155 GACCTGCGCCAAATACAATATTG 58.710 43.478 14.01 14.01 0.00 1.90
2883 2907 7.922278 CCAAATACAATATTGACAGGTGAATGG 59.078 37.037 22.16 12.02 0.00 3.16
2906 2933 5.339200 GGTTGATCACTAAATCTCCCTTGGA 60.339 44.000 0.00 0.00 0.00 3.53
2919 2946 9.579932 AAATCTCCCTTGGATTTAGATATGTTC 57.420 33.333 0.00 0.00 40.31 3.18
2940 2967 7.657336 TGTTCTTTGTATCCCAACTCATTTTC 58.343 34.615 0.00 0.00 31.20 2.29
3011 3039 6.021782 CGAATTGTGTACCGTTTATTCAATGC 60.022 38.462 0.00 0.00 0.00 3.56
3014 3042 7.436430 TTGTGTACCGTTTATTCAATGCTTA 57.564 32.000 0.00 0.00 0.00 3.09
3138 3166 1.202915 TGGCATGTTCTGAAGAAGGCA 60.203 47.619 13.56 13.56 34.27 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.261180 GGTATATCATATAAATAGTGCATGCGT 57.739 33.333 14.09 5.32 0.00 5.24
1 2 9.260002 TGGTATATCATATAAATAGTGCATGCG 57.740 33.333 14.09 0.00 0.00 4.73
15 16 9.017509 CCATTTTCACTGCTTGGTATATCATAT 57.982 33.333 0.00 0.00 0.00 1.78
16 17 8.217111 TCCATTTTCACTGCTTGGTATATCATA 58.783 33.333 0.00 0.00 0.00 2.15
17 18 7.062322 TCCATTTTCACTGCTTGGTATATCAT 58.938 34.615 0.00 0.00 0.00 2.45
18 19 6.422333 TCCATTTTCACTGCTTGGTATATCA 58.578 36.000 0.00 0.00 0.00 2.15
19 20 6.942532 TCCATTTTCACTGCTTGGTATATC 57.057 37.500 0.00 0.00 0.00 1.63
20 21 7.902920 AATCCATTTTCACTGCTTGGTATAT 57.097 32.000 0.00 0.00 0.00 0.86
21 22 8.052748 AGTAATCCATTTTCACTGCTTGGTATA 58.947 33.333 0.00 0.00 0.00 1.47
22 23 6.891908 AGTAATCCATTTTCACTGCTTGGTAT 59.108 34.615 0.00 0.00 0.00 2.73
23 24 6.245408 AGTAATCCATTTTCACTGCTTGGTA 58.755 36.000 0.00 0.00 0.00 3.25
24 25 5.079643 AGTAATCCATTTTCACTGCTTGGT 58.920 37.500 0.00 0.00 0.00 3.67
25 26 5.649782 AGTAATCCATTTTCACTGCTTGG 57.350 39.130 0.00 0.00 0.00 3.61
26 27 7.615582 TCTAGTAATCCATTTTCACTGCTTG 57.384 36.000 0.00 0.00 0.00 4.01
27 28 7.885399 ACTTCTAGTAATCCATTTTCACTGCTT 59.115 33.333 0.00 0.00 0.00 3.91
28 29 7.335422 CACTTCTAGTAATCCATTTTCACTGCT 59.665 37.037 0.00 0.00 0.00 4.24
29 30 7.334421 TCACTTCTAGTAATCCATTTTCACTGC 59.666 37.037 0.00 0.00 0.00 4.40
30 31 8.777865 TCACTTCTAGTAATCCATTTTCACTG 57.222 34.615 0.00 0.00 0.00 3.66
31 32 9.793259 TTTCACTTCTAGTAATCCATTTTCACT 57.207 29.630 0.00 0.00 0.00 3.41
35 36 9.588096 ACCTTTTCACTTCTAGTAATCCATTTT 57.412 29.630 0.00 0.00 0.00 1.82
36 37 9.232473 GACCTTTTCACTTCTAGTAATCCATTT 57.768 33.333 0.00 0.00 0.00 2.32
37 38 8.606830 AGACCTTTTCACTTCTAGTAATCCATT 58.393 33.333 0.00 0.00 0.00 3.16
38 39 8.043710 CAGACCTTTTCACTTCTAGTAATCCAT 58.956 37.037 0.00 0.00 0.00 3.41
39 40 7.234782 TCAGACCTTTTCACTTCTAGTAATCCA 59.765 37.037 0.00 0.00 0.00 3.41
40 41 7.612677 TCAGACCTTTTCACTTCTAGTAATCC 58.387 38.462 0.00 0.00 0.00 3.01
41 42 9.660180 ATTCAGACCTTTTCACTTCTAGTAATC 57.340 33.333 0.00 0.00 0.00 1.75
43 44 9.924650 GTATTCAGACCTTTTCACTTCTAGTAA 57.075 33.333 0.00 0.00 0.00 2.24
44 45 8.242053 CGTATTCAGACCTTTTCACTTCTAGTA 58.758 37.037 0.00 0.00 0.00 1.82
45 46 7.039923 TCGTATTCAGACCTTTTCACTTCTAGT 60.040 37.037 0.00 0.00 0.00 2.57
46 47 7.313646 TCGTATTCAGACCTTTTCACTTCTAG 58.686 38.462 0.00 0.00 0.00 2.43
47 48 7.223260 TCGTATTCAGACCTTTTCACTTCTA 57.777 36.000 0.00 0.00 0.00 2.10
48 49 6.097915 TCGTATTCAGACCTTTTCACTTCT 57.902 37.500 0.00 0.00 0.00 2.85
49 50 6.618805 GCTTCGTATTCAGACCTTTTCACTTC 60.619 42.308 0.00 0.00 0.00 3.01
50 51 5.179555 GCTTCGTATTCAGACCTTTTCACTT 59.820 40.000 0.00 0.00 0.00 3.16
51 52 4.691216 GCTTCGTATTCAGACCTTTTCACT 59.309 41.667 0.00 0.00 0.00 3.41
52 53 4.451096 TGCTTCGTATTCAGACCTTTTCAC 59.549 41.667 0.00 0.00 0.00 3.18
53 54 4.637276 TGCTTCGTATTCAGACCTTTTCA 58.363 39.130 0.00 0.00 0.00 2.69
54 55 5.122396 ACATGCTTCGTATTCAGACCTTTTC 59.878 40.000 0.00 0.00 0.00 2.29
55 56 5.003804 ACATGCTTCGTATTCAGACCTTTT 58.996 37.500 0.00 0.00 0.00 2.27
56 57 4.579869 ACATGCTTCGTATTCAGACCTTT 58.420 39.130 0.00 0.00 0.00 3.11
57 58 4.207891 ACATGCTTCGTATTCAGACCTT 57.792 40.909 0.00 0.00 0.00 3.50
58 59 3.895232 ACATGCTTCGTATTCAGACCT 57.105 42.857 0.00 0.00 0.00 3.85
59 60 7.891183 ATATTACATGCTTCGTATTCAGACC 57.109 36.000 0.00 0.00 0.00 3.85
60 61 9.627395 ACTATATTACATGCTTCGTATTCAGAC 57.373 33.333 0.00 0.00 0.00 3.51
61 62 9.626045 CACTATATTACATGCTTCGTATTCAGA 57.374 33.333 0.00 0.00 0.00 3.27
62 63 9.626045 TCACTATATTACATGCTTCGTATTCAG 57.374 33.333 0.00 0.00 0.00 3.02
63 64 9.626045 CTCACTATATTACATGCTTCGTATTCA 57.374 33.333 0.00 0.00 0.00 2.57
64 65 9.627395 ACTCACTATATTACATGCTTCGTATTC 57.373 33.333 0.00 0.00 0.00 1.75
65 66 9.411801 CACTCACTATATTACATGCTTCGTATT 57.588 33.333 0.00 0.00 0.00 1.89
66 67 8.029522 CCACTCACTATATTACATGCTTCGTAT 58.970 37.037 0.00 0.00 0.00 3.06
67 68 7.368059 CCACTCACTATATTACATGCTTCGTA 58.632 38.462 0.00 0.00 0.00 3.43
68 69 6.216569 CCACTCACTATATTACATGCTTCGT 58.783 40.000 0.00 0.00 0.00 3.85
69 70 5.635280 CCCACTCACTATATTACATGCTTCG 59.365 44.000 0.00 0.00 0.00 3.79
70 71 6.759272 TCCCACTCACTATATTACATGCTTC 58.241 40.000 0.00 0.00 0.00 3.86
71 72 6.747414 TCCCACTCACTATATTACATGCTT 57.253 37.500 0.00 0.00 0.00 3.91
72 73 6.747414 TTCCCACTCACTATATTACATGCT 57.253 37.500 0.00 0.00 0.00 3.79
73 74 6.595716 GGATTCCCACTCACTATATTACATGC 59.404 42.308 0.00 0.00 0.00 4.06
74 75 7.106239 GGGATTCCCACTCACTATATTACATG 58.894 42.308 17.36 0.00 44.65 3.21
75 76 7.259088 GGGATTCCCACTCACTATATTACAT 57.741 40.000 17.36 0.00 44.65 2.29
76 77 6.681729 GGGATTCCCACTCACTATATTACA 57.318 41.667 17.36 0.00 44.65 2.41
91 92 1.494721 TCCACTAGCATTGGGATTCCC 59.505 52.381 15.40 15.40 45.71 3.97
92 93 3.152341 CATCCACTAGCATTGGGATTCC 58.848 50.000 0.00 0.00 38.05 3.01
93 94 3.152341 CCATCCACTAGCATTGGGATTC 58.848 50.000 0.00 0.00 38.05 2.52
94 95 3.234234 CCATCCACTAGCATTGGGATT 57.766 47.619 0.00 0.00 38.05 3.01
95 96 2.965671 CCATCCACTAGCATTGGGAT 57.034 50.000 0.00 0.00 40.71 3.85
97 98 0.846015 TCCCATCCACTAGCATTGGG 59.154 55.000 12.31 12.31 46.99 4.12
98 99 1.202855 CCTCCCATCCACTAGCATTGG 60.203 57.143 0.00 0.00 35.18 3.16
99 100 1.202855 CCCTCCCATCCACTAGCATTG 60.203 57.143 0.00 0.00 0.00 2.82
100 101 1.143813 CCCTCCCATCCACTAGCATT 58.856 55.000 0.00 0.00 0.00 3.56
101 102 0.268869 TCCCTCCCATCCACTAGCAT 59.731 55.000 0.00 0.00 0.00 3.79
102 103 0.268869 ATCCCTCCCATCCACTAGCA 59.731 55.000 0.00 0.00 0.00 3.49
103 104 1.439543 AATCCCTCCCATCCACTAGC 58.560 55.000 0.00 0.00 0.00 3.42
104 105 3.580458 CTGTAATCCCTCCCATCCACTAG 59.420 52.174 0.00 0.00 0.00 2.57
105 106 3.051341 ACTGTAATCCCTCCCATCCACTA 60.051 47.826 0.00 0.00 0.00 2.74
106 107 2.293856 ACTGTAATCCCTCCCATCCACT 60.294 50.000 0.00 0.00 0.00 4.00
107 108 2.127708 ACTGTAATCCCTCCCATCCAC 58.872 52.381 0.00 0.00 0.00 4.02
108 109 2.126882 CACTGTAATCCCTCCCATCCA 58.873 52.381 0.00 0.00 0.00 3.41
109 110 1.421646 CCACTGTAATCCCTCCCATCC 59.578 57.143 0.00 0.00 0.00 3.51
110 111 2.408565 TCCACTGTAATCCCTCCCATC 58.591 52.381 0.00 0.00 0.00 3.51
111 112 2.587060 TCCACTGTAATCCCTCCCAT 57.413 50.000 0.00 0.00 0.00 4.00
112 113 2.126882 CATCCACTGTAATCCCTCCCA 58.873 52.381 0.00 0.00 0.00 4.37
113 114 2.127708 ACATCCACTGTAATCCCTCCC 58.872 52.381 0.00 0.00 35.91 4.30
114 115 5.308237 AGAATACATCCACTGTAATCCCTCC 59.692 44.000 0.00 0.00 43.42 4.30
115 116 6.426646 AGAATACATCCACTGTAATCCCTC 57.573 41.667 0.00 0.00 43.42 4.30
116 117 5.308237 GGAGAATACATCCACTGTAATCCCT 59.692 44.000 0.00 0.00 43.42 4.20
117 118 5.552178 GGAGAATACATCCACTGTAATCCC 58.448 45.833 0.00 0.00 43.42 3.85
118 119 5.010719 TCGGAGAATACATCCACTGTAATCC 59.989 44.000 0.00 0.00 43.42 3.01
119 120 6.016192 TCTCGGAGAATACATCCACTGTAATC 60.016 42.308 4.96 0.00 43.42 1.75
120 121 5.833667 TCTCGGAGAATACATCCACTGTAAT 59.166 40.000 4.96 0.00 43.42 1.89
121 122 5.198207 TCTCGGAGAATACATCCACTGTAA 58.802 41.667 4.96 0.00 43.42 2.41
122 123 4.788679 TCTCGGAGAATACATCCACTGTA 58.211 43.478 4.96 0.00 44.29 2.74
123 124 3.632333 TCTCGGAGAATACATCCACTGT 58.368 45.455 4.96 0.00 37.85 3.55
124 125 3.551863 GCTCTCGGAGAATACATCCACTG 60.552 52.174 9.32 0.00 36.57 3.66
125 126 2.625790 GCTCTCGGAGAATACATCCACT 59.374 50.000 9.32 0.00 36.57 4.00
126 127 2.625790 AGCTCTCGGAGAATACATCCAC 59.374 50.000 9.32 0.00 36.57 4.02
127 128 2.887783 GAGCTCTCGGAGAATACATCCA 59.112 50.000 6.43 0.00 36.57 3.41
128 129 2.230266 GGAGCTCTCGGAGAATACATCC 59.770 54.545 14.64 8.18 34.09 3.51
129 130 2.887783 TGGAGCTCTCGGAGAATACATC 59.112 50.000 14.64 3.20 34.09 3.06
130 131 2.950781 TGGAGCTCTCGGAGAATACAT 58.049 47.619 14.64 0.00 34.09 2.29
131 132 2.437085 TGGAGCTCTCGGAGAATACA 57.563 50.000 14.64 5.03 34.09 2.29
132 133 3.648009 CATTGGAGCTCTCGGAGAATAC 58.352 50.000 14.64 2.37 34.09 1.89
133 134 2.036475 GCATTGGAGCTCTCGGAGAATA 59.964 50.000 14.64 0.00 34.09 1.75
134 135 1.202627 GCATTGGAGCTCTCGGAGAAT 60.203 52.381 14.64 0.52 34.09 2.40
135 136 0.176680 GCATTGGAGCTCTCGGAGAA 59.823 55.000 14.64 0.00 34.09 2.87
136 137 0.972471 TGCATTGGAGCTCTCGGAGA 60.972 55.000 14.64 7.60 34.99 3.71
137 138 0.107993 TTGCATTGGAGCTCTCGGAG 60.108 55.000 14.64 0.00 34.99 4.63
138 139 0.543277 ATTGCATTGGAGCTCTCGGA 59.457 50.000 14.64 0.00 34.99 4.55
139 140 1.386533 AATTGCATTGGAGCTCTCGG 58.613 50.000 14.64 2.35 34.99 4.63
140 141 2.421073 TGAAATTGCATTGGAGCTCTCG 59.579 45.455 14.64 0.80 34.99 4.04
141 142 3.730061 CGTGAAATTGCATTGGAGCTCTC 60.730 47.826 14.64 4.40 34.99 3.20
142 143 2.163010 CGTGAAATTGCATTGGAGCTCT 59.837 45.455 14.64 0.00 34.99 4.09
143 144 2.523015 CGTGAAATTGCATTGGAGCTC 58.477 47.619 4.71 4.71 34.99 4.09
144 145 1.403249 GCGTGAAATTGCATTGGAGCT 60.403 47.619 0.00 0.00 34.99 4.09
145 146 0.994263 GCGTGAAATTGCATTGGAGC 59.006 50.000 0.00 0.00 0.00 4.70
146 147 1.632422 GGCGTGAAATTGCATTGGAG 58.368 50.000 0.00 0.00 0.00 3.86
147 148 0.246086 GGGCGTGAAATTGCATTGGA 59.754 50.000 0.00 0.00 0.00 3.53
148 149 0.037512 TGGGCGTGAAATTGCATTGG 60.038 50.000 0.00 0.00 0.00 3.16
149 150 1.460359 GTTGGGCGTGAAATTGCATTG 59.540 47.619 0.00 0.00 0.00 2.82
150 151 1.069823 TGTTGGGCGTGAAATTGCATT 59.930 42.857 0.00 0.00 0.00 3.56
151 152 0.678395 TGTTGGGCGTGAAATTGCAT 59.322 45.000 0.00 0.00 0.00 3.96
152 153 0.249238 GTGTTGGGCGTGAAATTGCA 60.249 50.000 0.00 0.00 0.00 4.08
153 154 0.249238 TGTGTTGGGCGTGAAATTGC 60.249 50.000 0.00 0.00 0.00 3.56
154 155 1.857837 GTTGTGTTGGGCGTGAAATTG 59.142 47.619 0.00 0.00 0.00 2.32
155 156 1.202475 GGTTGTGTTGGGCGTGAAATT 60.202 47.619 0.00 0.00 0.00 1.82
156 157 0.387565 GGTTGTGTTGGGCGTGAAAT 59.612 50.000 0.00 0.00 0.00 2.17
157 158 0.681564 AGGTTGTGTTGGGCGTGAAA 60.682 50.000 0.00 0.00 0.00 2.69
158 159 0.681564 AAGGTTGTGTTGGGCGTGAA 60.682 50.000 0.00 0.00 0.00 3.18
159 160 0.681564 AAAGGTTGTGTTGGGCGTGA 60.682 50.000 0.00 0.00 0.00 4.35
160 161 0.248866 GAAAGGTTGTGTTGGGCGTG 60.249 55.000 0.00 0.00 0.00 5.34
161 162 0.395173 AGAAAGGTTGTGTTGGGCGT 60.395 50.000 0.00 0.00 0.00 5.68
162 163 0.310854 GAGAAAGGTTGTGTTGGGCG 59.689 55.000 0.00 0.00 0.00 6.13
163 164 0.673985 GGAGAAAGGTTGTGTTGGGC 59.326 55.000 0.00 0.00 0.00 5.36
164 165 2.065899 TGGAGAAAGGTTGTGTTGGG 57.934 50.000 0.00 0.00 0.00 4.12
165 166 3.023832 AGTTGGAGAAAGGTTGTGTTGG 58.976 45.455 0.00 0.00 0.00 3.77
166 167 4.881850 AGTAGTTGGAGAAAGGTTGTGTTG 59.118 41.667 0.00 0.00 0.00 3.33
167 168 5.112129 AGTAGTTGGAGAAAGGTTGTGTT 57.888 39.130 0.00 0.00 0.00 3.32
168 169 4.772886 AGTAGTTGGAGAAAGGTTGTGT 57.227 40.909 0.00 0.00 0.00 3.72
169 170 7.162082 AGAATAGTAGTTGGAGAAAGGTTGTG 58.838 38.462 0.00 0.00 0.00 3.33
170 171 7.317722 AGAATAGTAGTTGGAGAAAGGTTGT 57.682 36.000 0.00 0.00 0.00 3.32
171 172 8.097662 AGAAGAATAGTAGTTGGAGAAAGGTTG 58.902 37.037 0.00 0.00 0.00 3.77
172 173 8.208575 AGAAGAATAGTAGTTGGAGAAAGGTT 57.791 34.615 0.00 0.00 0.00 3.50
173 174 7.093245 GGAGAAGAATAGTAGTTGGAGAAAGGT 60.093 40.741 0.00 0.00 0.00 3.50
174 175 7.125053 AGGAGAAGAATAGTAGTTGGAGAAAGG 59.875 40.741 0.00 0.00 0.00 3.11
175 176 8.073467 AGGAGAAGAATAGTAGTTGGAGAAAG 57.927 38.462 0.00 0.00 0.00 2.62
176 177 8.968969 GTAGGAGAAGAATAGTAGTTGGAGAAA 58.031 37.037 0.00 0.00 0.00 2.52
177 178 7.560626 GGTAGGAGAAGAATAGTAGTTGGAGAA 59.439 40.741 0.00 0.00 0.00 2.87
178 179 7.061688 GGTAGGAGAAGAATAGTAGTTGGAGA 58.938 42.308 0.00 0.00 0.00 3.71
179 180 7.064229 AGGTAGGAGAAGAATAGTAGTTGGAG 58.936 42.308 0.00 0.00 0.00 3.86
180 181 6.982899 AGGTAGGAGAAGAATAGTAGTTGGA 58.017 40.000 0.00 0.00 0.00 3.53
181 182 7.663043 AAGGTAGGAGAAGAATAGTAGTTGG 57.337 40.000 0.00 0.00 0.00 3.77
182 183 7.492994 GCAAAGGTAGGAGAAGAATAGTAGTTG 59.507 40.741 0.00 0.00 0.00 3.16
183 184 7.400627 AGCAAAGGTAGGAGAAGAATAGTAGTT 59.599 37.037 0.00 0.00 0.00 2.24
184 185 6.898521 AGCAAAGGTAGGAGAAGAATAGTAGT 59.101 38.462 0.00 0.00 0.00 2.73
185 186 7.286775 AGAGCAAAGGTAGGAGAAGAATAGTAG 59.713 40.741 0.00 0.00 0.00 2.57
186 187 7.126733 AGAGCAAAGGTAGGAGAAGAATAGTA 58.873 38.462 0.00 0.00 0.00 1.82
187 188 5.961421 AGAGCAAAGGTAGGAGAAGAATAGT 59.039 40.000 0.00 0.00 0.00 2.12
188 189 6.478512 AGAGCAAAGGTAGGAGAAGAATAG 57.521 41.667 0.00 0.00 0.00 1.73
189 190 9.080097 GTATAGAGCAAAGGTAGGAGAAGAATA 57.920 37.037 0.00 0.00 0.00 1.75
190 191 7.787424 AGTATAGAGCAAAGGTAGGAGAAGAAT 59.213 37.037 0.00 0.00 0.00 2.40
191 192 7.126733 AGTATAGAGCAAAGGTAGGAGAAGAA 58.873 38.462 0.00 0.00 0.00 2.52
192 193 6.674573 AGTATAGAGCAAAGGTAGGAGAAGA 58.325 40.000 0.00 0.00 0.00 2.87
193 194 6.969993 AGTATAGAGCAAAGGTAGGAGAAG 57.030 41.667 0.00 0.00 0.00 2.85
194 195 7.399191 TGAAAGTATAGAGCAAAGGTAGGAGAA 59.601 37.037 0.00 0.00 0.00 2.87
195 196 6.895756 TGAAAGTATAGAGCAAAGGTAGGAGA 59.104 38.462 0.00 0.00 0.00 3.71
196 197 6.981559 GTGAAAGTATAGAGCAAAGGTAGGAG 59.018 42.308 0.00 0.00 0.00 3.69
197 198 6.439375 TGTGAAAGTATAGAGCAAAGGTAGGA 59.561 38.462 0.00 0.00 0.00 2.94
198 199 6.640518 TGTGAAAGTATAGAGCAAAGGTAGG 58.359 40.000 0.00 0.00 0.00 3.18
199 200 7.981789 TCATGTGAAAGTATAGAGCAAAGGTAG 59.018 37.037 0.00 0.00 0.00 3.18
200 201 7.847096 TCATGTGAAAGTATAGAGCAAAGGTA 58.153 34.615 0.00 0.00 0.00 3.08
201 202 6.711277 TCATGTGAAAGTATAGAGCAAAGGT 58.289 36.000 0.00 0.00 0.00 3.50
202 203 7.335422 ACTTCATGTGAAAGTATAGAGCAAAGG 59.665 37.037 0.00 0.00 33.07 3.11
203 204 8.261492 ACTTCATGTGAAAGTATAGAGCAAAG 57.739 34.615 0.00 0.00 33.07 2.77
204 205 9.890629 ATACTTCATGTGAAAGTATAGAGCAAA 57.109 29.630 13.77 0.00 32.22 3.68
205 206 9.534565 GATACTTCATGTGAAAGTATAGAGCAA 57.465 33.333 14.85 0.00 33.15 3.91
206 207 8.918116 AGATACTTCATGTGAAAGTATAGAGCA 58.082 33.333 14.85 0.00 33.15 4.26
207 208 9.405587 GAGATACTTCATGTGAAAGTATAGAGC 57.594 37.037 14.85 6.32 33.15 4.09
213 214 9.996554 TTTCTTGAGATACTTCATGTGAAAGTA 57.003 29.630 7.67 7.67 33.07 2.24
214 215 8.908786 TTTCTTGAGATACTTCATGTGAAAGT 57.091 30.769 3.99 3.99 33.07 2.66
228 229 9.793259 ACCAAACAGTTCTTATTTCTTGAGATA 57.207 29.630 0.00 0.00 0.00 1.98
229 230 8.697507 ACCAAACAGTTCTTATTTCTTGAGAT 57.302 30.769 0.00 0.00 0.00 2.75
230 231 8.519799 AACCAAACAGTTCTTATTTCTTGAGA 57.480 30.769 0.00 0.00 0.00 3.27
231 232 9.237846 GAAACCAAACAGTTCTTATTTCTTGAG 57.762 33.333 0.00 0.00 0.00 3.02
232 233 8.744652 TGAAACCAAACAGTTCTTATTTCTTGA 58.255 29.630 10.95 0.00 0.00 3.02
233 234 8.925161 TGAAACCAAACAGTTCTTATTTCTTG 57.075 30.769 10.95 0.00 0.00 3.02
235 236 9.750125 GAATGAAACCAAACAGTTCTTATTTCT 57.250 29.630 10.95 0.00 0.00 2.52
236 237 9.528018 TGAATGAAACCAAACAGTTCTTATTTC 57.472 29.630 0.00 0.00 0.00 2.17
237 238 9.883142 TTGAATGAAACCAAACAGTTCTTATTT 57.117 25.926 0.00 0.00 0.00 1.40
238 239 9.313118 GTTGAATGAAACCAAACAGTTCTTATT 57.687 29.630 0.00 0.00 0.00 1.40
239 240 8.474025 TGTTGAATGAAACCAAACAGTTCTTAT 58.526 29.630 0.00 0.00 0.00 1.73
240 241 7.831753 TGTTGAATGAAACCAAACAGTTCTTA 58.168 30.769 0.00 0.00 0.00 2.10
241 242 6.696411 TGTTGAATGAAACCAAACAGTTCTT 58.304 32.000 0.00 0.00 0.00 2.52
242 243 6.152661 TCTGTTGAATGAAACCAAACAGTTCT 59.847 34.615 12.16 0.00 0.00 3.01
243 244 6.329496 TCTGTTGAATGAAACCAAACAGTTC 58.671 36.000 12.16 0.00 0.00 3.01
244 245 6.279513 TCTGTTGAATGAAACCAAACAGTT 57.720 33.333 12.16 0.00 0.00 3.16
245 246 5.913137 TCTGTTGAATGAAACCAAACAGT 57.087 34.783 12.16 0.00 0.00 3.55
246 247 5.750067 CCTTCTGTTGAATGAAACCAAACAG 59.250 40.000 7.38 7.38 0.00 3.16
247 248 5.420421 TCCTTCTGTTGAATGAAACCAAACA 59.580 36.000 0.00 0.00 0.00 2.83
248 249 5.901552 TCCTTCTGTTGAATGAAACCAAAC 58.098 37.500 0.00 0.00 0.00 2.93
249 250 6.379703 TCTTCCTTCTGTTGAATGAAACCAAA 59.620 34.615 0.00 0.00 36.74 3.28
250 251 5.890985 TCTTCCTTCTGTTGAATGAAACCAA 59.109 36.000 0.00 0.00 36.74 3.67
251 252 5.445069 TCTTCCTTCTGTTGAATGAAACCA 58.555 37.500 0.00 0.00 36.74 3.67
252 253 5.563671 GCTCTTCCTTCTGTTGAATGAAACC 60.564 44.000 0.00 0.00 36.74 3.27
253 254 5.240403 AGCTCTTCCTTCTGTTGAATGAAAC 59.760 40.000 0.00 0.00 36.74 2.78
254 255 5.380043 AGCTCTTCCTTCTGTTGAATGAAA 58.620 37.500 0.00 0.00 36.74 2.69
255 256 4.978099 AGCTCTTCCTTCTGTTGAATGAA 58.022 39.130 0.00 0.00 35.50 2.57
256 257 4.630644 AGCTCTTCCTTCTGTTGAATGA 57.369 40.909 0.00 0.00 0.00 2.57
257 258 5.294050 GAAGCTCTTCCTTCTGTTGAATG 57.706 43.478 0.00 0.00 38.50 2.67
276 277 6.689554 TGCAGATCTATGATAGCTGAAGAAG 58.310 40.000 10.16 0.00 0.00 2.85
277 278 6.661304 TGCAGATCTATGATAGCTGAAGAA 57.339 37.500 10.16 0.00 0.00 2.52
278 279 6.664384 AGATGCAGATCTATGATAGCTGAAGA 59.336 38.462 10.16 0.00 37.15 2.87
279 280 6.869695 AGATGCAGATCTATGATAGCTGAAG 58.130 40.000 10.16 0.00 37.15 3.02
280 281 6.854091 AGATGCAGATCTATGATAGCTGAA 57.146 37.500 10.16 1.81 37.15 3.02
281 282 6.854091 AAGATGCAGATCTATGATAGCTGA 57.146 37.500 10.16 0.00 38.03 4.26
282 283 8.635328 AGATAAGATGCAGATCTATGATAGCTG 58.365 37.037 0.00 0.00 38.03 4.24
283 284 8.771521 AGATAAGATGCAGATCTATGATAGCT 57.228 34.615 0.00 0.00 38.03 3.32
303 304 9.826574 AGTGCGGACAATATAACTTTTAGATAA 57.173 29.630 10.52 0.00 0.00 1.75
305 306 9.257651 GTAGTGCGGACAATATAACTTTTAGAT 57.742 33.333 10.52 0.00 0.00 1.98
306 307 8.252417 TGTAGTGCGGACAATATAACTTTTAGA 58.748 33.333 10.52 0.00 0.00 2.10
307 308 8.415192 TGTAGTGCGGACAATATAACTTTTAG 57.585 34.615 10.52 0.00 0.00 1.85
308 309 8.951787 ATGTAGTGCGGACAATATAACTTTTA 57.048 30.769 10.52 0.00 0.00 1.52
309 310 7.859325 ATGTAGTGCGGACAATATAACTTTT 57.141 32.000 10.52 0.00 0.00 2.27
310 311 7.551262 TGAATGTAGTGCGGACAATATAACTTT 59.449 33.333 10.52 2.35 0.00 2.66
311 312 7.011109 GTGAATGTAGTGCGGACAATATAACTT 59.989 37.037 10.52 0.00 0.00 2.66
312 313 6.479001 GTGAATGTAGTGCGGACAATATAACT 59.521 38.462 10.52 0.00 0.00 2.24
313 314 6.256975 TGTGAATGTAGTGCGGACAATATAAC 59.743 38.462 10.52 0.00 0.00 1.89
314 315 6.342111 TGTGAATGTAGTGCGGACAATATAA 58.658 36.000 10.52 0.00 0.00 0.98
315 316 5.908341 TGTGAATGTAGTGCGGACAATATA 58.092 37.500 10.52 0.00 0.00 0.86
316 317 4.765273 TGTGAATGTAGTGCGGACAATAT 58.235 39.130 10.52 0.00 0.00 1.28
317 318 4.195225 TGTGAATGTAGTGCGGACAATA 57.805 40.909 10.52 0.00 0.00 1.90
318 319 3.052455 TGTGAATGTAGTGCGGACAAT 57.948 42.857 10.52 0.00 0.00 2.71
319 320 2.535012 TGTGAATGTAGTGCGGACAA 57.465 45.000 10.52 0.00 0.00 3.18
320 321 2.412870 CTTGTGAATGTAGTGCGGACA 58.587 47.619 10.52 0.00 0.00 4.02
321 322 1.732259 CCTTGTGAATGTAGTGCGGAC 59.268 52.381 0.00 0.00 0.00 4.79
322 323 1.346395 ACCTTGTGAATGTAGTGCGGA 59.654 47.619 0.00 0.00 0.00 5.54
323 324 1.808411 ACCTTGTGAATGTAGTGCGG 58.192 50.000 0.00 0.00 0.00 5.69
324 325 3.309682 CCATACCTTGTGAATGTAGTGCG 59.690 47.826 0.00 0.00 0.00 5.34
325 326 3.065371 GCCATACCTTGTGAATGTAGTGC 59.935 47.826 0.00 0.00 0.00 4.40
326 327 4.517285 AGCCATACCTTGTGAATGTAGTG 58.483 43.478 0.00 0.00 0.00 2.74
327 328 4.844349 AGCCATACCTTGTGAATGTAGT 57.156 40.909 0.00 0.00 0.00 2.73
328 329 5.415701 ACAAAGCCATACCTTGTGAATGTAG 59.584 40.000 0.00 0.00 0.00 2.74
329 330 5.321102 ACAAAGCCATACCTTGTGAATGTA 58.679 37.500 0.00 0.00 0.00 2.29
330 331 4.151883 ACAAAGCCATACCTTGTGAATGT 58.848 39.130 0.00 0.00 0.00 2.71
331 332 4.789012 ACAAAGCCATACCTTGTGAATG 57.211 40.909 0.00 0.00 0.00 2.67
332 333 5.539955 AGAAACAAAGCCATACCTTGTGAAT 59.460 36.000 0.00 0.00 0.00 2.57
333 334 4.892934 AGAAACAAAGCCATACCTTGTGAA 59.107 37.500 0.00 0.00 0.00 3.18
334 335 4.469657 AGAAACAAAGCCATACCTTGTGA 58.530 39.130 0.00 0.00 0.00 3.58
335 336 4.853924 AGAAACAAAGCCATACCTTGTG 57.146 40.909 0.00 0.00 0.00 3.33
336 337 7.451566 AGAATAAGAAACAAAGCCATACCTTGT 59.548 33.333 0.00 0.00 0.00 3.16
337 338 7.830739 AGAATAAGAAACAAAGCCATACCTTG 58.169 34.615 0.00 0.00 0.00 3.61
338 339 8.422577 AAGAATAAGAAACAAAGCCATACCTT 57.577 30.769 0.00 0.00 0.00 3.50
339 340 9.700831 ATAAGAATAAGAAACAAAGCCATACCT 57.299 29.630 0.00 0.00 0.00 3.08
340 341 9.736023 CATAAGAATAAGAAACAAAGCCATACC 57.264 33.333 0.00 0.00 0.00 2.73
344 345 8.736244 GGTACATAAGAATAAGAAACAAAGCCA 58.264 33.333 0.00 0.00 0.00 4.75
345 346 8.957466 AGGTACATAAGAATAAGAAACAAAGCC 58.043 33.333 0.00 0.00 0.00 4.35
346 347 9.989869 GAGGTACATAAGAATAAGAAACAAAGC 57.010 33.333 0.00 0.00 0.00 3.51
383 384 9.832445 GGACATTTTGGAACTCATATAACTAGA 57.168 33.333 0.00 0.00 0.00 2.43
384 385 9.613428 TGGACATTTTGGAACTCATATAACTAG 57.387 33.333 0.00 0.00 0.00 2.57
385 386 9.613428 CTGGACATTTTGGAACTCATATAACTA 57.387 33.333 0.00 0.00 0.00 2.24
386 387 8.328758 TCTGGACATTTTGGAACTCATATAACT 58.671 33.333 0.00 0.00 0.00 2.24
387 388 8.506168 TCTGGACATTTTGGAACTCATATAAC 57.494 34.615 0.00 0.00 0.00 1.89
390 391 9.293404 CATATCTGGACATTTTGGAACTCATAT 57.707 33.333 0.00 0.00 0.00 1.78
391 392 8.274322 ACATATCTGGACATTTTGGAACTCATA 58.726 33.333 0.00 0.00 0.00 2.15
392 393 7.121382 ACATATCTGGACATTTTGGAACTCAT 58.879 34.615 0.00 0.00 0.00 2.90
393 394 6.484288 ACATATCTGGACATTTTGGAACTCA 58.516 36.000 0.00 0.00 0.00 3.41
394 395 7.396540 AACATATCTGGACATTTTGGAACTC 57.603 36.000 0.00 0.00 0.00 3.01
395 396 8.109634 AGTAACATATCTGGACATTTTGGAACT 58.890 33.333 0.00 0.00 0.00 3.01
396 397 8.184192 CAGTAACATATCTGGACATTTTGGAAC 58.816 37.037 0.00 0.00 0.00 3.62
397 398 8.279970 CAGTAACATATCTGGACATTTTGGAA 57.720 34.615 0.00 0.00 0.00 3.53
398 399 7.864108 CAGTAACATATCTGGACATTTTGGA 57.136 36.000 0.00 0.00 0.00 3.53
409 410 8.999431 ACAAACAAAGTACCAGTAACATATCTG 58.001 33.333 0.00 0.00 0.00 2.90
414 415 9.264719 GTACTACAAACAAAGTACCAGTAACAT 57.735 33.333 1.99 0.00 41.37 2.71
415 416 8.647143 GTACTACAAACAAAGTACCAGTAACA 57.353 34.615 1.99 0.00 41.37 2.41
423 424 7.803724 CCTGAATGGTACTACAAACAAAGTAC 58.196 38.462 4.44 4.44 44.77 2.73
424 425 7.972832 CCTGAATGGTACTACAAACAAAGTA 57.027 36.000 0.00 0.00 0.00 2.24
425 426 6.877611 CCTGAATGGTACTACAAACAAAGT 57.122 37.500 0.00 0.00 0.00 2.66
461 462 9.506018 CACAGGATACATCAAAACATGGATATA 57.494 33.333 0.00 0.00 41.41 0.86
462 463 8.000709 ACACAGGATACATCAAAACATGGATAT 58.999 33.333 0.00 0.00 41.41 1.63
463 464 7.345691 ACACAGGATACATCAAAACATGGATA 58.654 34.615 0.00 0.00 41.41 2.59
464 465 6.189859 ACACAGGATACATCAAAACATGGAT 58.810 36.000 0.00 0.00 41.41 3.41
465 466 5.569355 ACACAGGATACATCAAAACATGGA 58.431 37.500 0.00 0.00 41.41 3.41
466 467 5.902613 ACACAGGATACATCAAAACATGG 57.097 39.130 0.00 0.00 41.41 3.66
467 468 8.729756 TCTTAACACAGGATACATCAAAACATG 58.270 33.333 0.00 0.00 41.41 3.21
468 469 8.862325 TCTTAACACAGGATACATCAAAACAT 57.138 30.769 0.00 0.00 41.41 2.71
469 470 7.390440 CCTCTTAACACAGGATACATCAAAACA 59.610 37.037 0.00 0.00 41.41 2.83
470 471 7.148239 CCCTCTTAACACAGGATACATCAAAAC 60.148 40.741 0.00 0.00 41.41 2.43
471 472 6.884295 CCCTCTTAACACAGGATACATCAAAA 59.116 38.462 0.00 0.00 41.41 2.44
472 473 6.012858 ACCCTCTTAACACAGGATACATCAAA 60.013 38.462 0.00 0.00 41.41 2.69
473 474 5.487488 ACCCTCTTAACACAGGATACATCAA 59.513 40.000 0.00 0.00 41.41 2.57
474 475 5.030147 ACCCTCTTAACACAGGATACATCA 58.970 41.667 0.00 0.00 41.41 3.07
475 476 5.360591 CACCCTCTTAACACAGGATACATC 58.639 45.833 0.00 0.00 41.41 3.06
476 477 4.384208 GCACCCTCTTAACACAGGATACAT 60.384 45.833 0.00 0.00 41.41 2.29
477 478 3.055385 GCACCCTCTTAACACAGGATACA 60.055 47.826 0.00 0.00 41.41 2.29
478 479 3.532542 GCACCCTCTTAACACAGGATAC 58.467 50.000 0.00 0.00 30.32 2.24
479 480 2.167693 CGCACCCTCTTAACACAGGATA 59.832 50.000 0.00 0.00 30.32 2.59
480 481 1.066143 CGCACCCTCTTAACACAGGAT 60.066 52.381 0.00 0.00 30.32 3.24
481 482 0.320374 CGCACCCTCTTAACACAGGA 59.680 55.000 0.00 0.00 30.32 3.86
482 483 0.034896 ACGCACCCTCTTAACACAGG 59.965 55.000 0.00 0.00 0.00 4.00
483 484 1.429463 GACGCACCCTCTTAACACAG 58.571 55.000 0.00 0.00 0.00 3.66
484 485 0.319211 CGACGCACCCTCTTAACACA 60.319 55.000 0.00 0.00 0.00 3.72
485 486 0.038892 TCGACGCACCCTCTTAACAC 60.039 55.000 0.00 0.00 0.00 3.32
486 487 0.892755 ATCGACGCACCCTCTTAACA 59.107 50.000 0.00 0.00 0.00 2.41
487 488 2.005971 AATCGACGCACCCTCTTAAC 57.994 50.000 0.00 0.00 0.00 2.01
488 489 2.343101 CAAATCGACGCACCCTCTTAA 58.657 47.619 0.00 0.00 0.00 1.85
489 490 1.404986 CCAAATCGACGCACCCTCTTA 60.405 52.381 0.00 0.00 0.00 2.10
490 491 0.673644 CCAAATCGACGCACCCTCTT 60.674 55.000 0.00 0.00 0.00 2.85
491 492 1.079127 CCAAATCGACGCACCCTCT 60.079 57.895 0.00 0.00 0.00 3.69
492 493 1.079405 TCCAAATCGACGCACCCTC 60.079 57.895 0.00 0.00 0.00 4.30
493 494 1.079127 CTCCAAATCGACGCACCCT 60.079 57.895 0.00 0.00 0.00 4.34
494 495 2.750888 GCTCCAAATCGACGCACCC 61.751 63.158 0.00 0.00 0.00 4.61
495 496 2.750888 GGCTCCAAATCGACGCACC 61.751 63.158 0.00 0.00 0.00 5.01
581 582 0.326927 AAACGATCCCACCCGACATT 59.673 50.000 0.00 0.00 0.00 2.71
582 583 0.392461 CAAACGATCCCACCCGACAT 60.392 55.000 0.00 0.00 0.00 3.06
587 588 2.823154 TCATTTTCAAACGATCCCACCC 59.177 45.455 0.00 0.00 0.00 4.61
592 593 7.083875 TGGTATCTTCATTTTCAAACGATCC 57.916 36.000 0.00 0.00 0.00 3.36
595 596 7.174080 TGACATGGTATCTTCATTTTCAAACGA 59.826 33.333 0.00 0.00 0.00 3.85
633 634 0.249699 CCCACGTGTTGAGCACTGTA 60.250 55.000 15.65 0.00 45.57 2.74
720 721 1.141234 GTCCACGGCCTACTACAGC 59.859 63.158 0.00 0.00 0.00 4.40
723 724 0.969409 ACTGGTCCACGGCCTACTAC 60.969 60.000 0.00 0.00 0.00 2.73
726 727 1.514553 GTACTGGTCCACGGCCTAC 59.485 63.158 0.00 0.00 0.00 3.18
785 786 1.472878 TCAGACAGCGTACTCCATCAC 59.527 52.381 0.00 0.00 0.00 3.06
878 879 1.617357 GGTGTCTAGAACGAACCACCT 59.383 52.381 16.78 0.00 39.36 4.00
916 917 4.439700 CGGCGAACTCTATCCTTTCTTGTA 60.440 45.833 0.00 0.00 0.00 2.41
977 980 3.197790 CTGGCGGTCAAGCATCGG 61.198 66.667 0.00 0.00 39.27 4.18
980 983 2.034687 AAGCTGGCGGTCAAGCAT 59.965 55.556 6.77 0.00 39.27 3.79
991 994 2.515523 CTCCCGCATCCAAGCTGG 60.516 66.667 0.00 0.00 39.90 4.85
993 996 2.688666 TCCTCCCGCATCCAAGCT 60.689 61.111 0.00 0.00 0.00 3.74
994 997 2.203126 CTCCTCCCGCATCCAAGC 60.203 66.667 0.00 0.00 0.00 4.01
995 998 1.445095 CTCTCCTCCCGCATCCAAG 59.555 63.158 0.00 0.00 0.00 3.61
1073 1076 3.324993 GAGTCTGCTTGGAGAAGAACAG 58.675 50.000 0.00 0.00 30.01 3.16
1124 1127 6.430007 ACCTTTCAGGCTCAAATGATTATCT 58.570 36.000 0.00 0.00 39.63 1.98
1127 1130 4.635765 CGACCTTTCAGGCTCAAATGATTA 59.364 41.667 0.00 0.00 39.63 1.75
1129 1132 3.012518 CGACCTTTCAGGCTCAAATGAT 58.987 45.455 0.00 0.00 39.63 2.45
1131 1134 2.154462 ACGACCTTTCAGGCTCAAATG 58.846 47.619 0.00 0.00 39.63 2.32
1146 1150 0.389426 AACCTGCATACACGACGACC 60.389 55.000 0.00 0.00 0.00 4.79
1148 1152 0.108992 GGAACCTGCATACACGACGA 60.109 55.000 0.00 0.00 0.00 4.20
1194 1198 3.628257 GGGATTGGATCTGGGTGTTCAAT 60.628 47.826 0.00 0.00 0.00 2.57
1212 1216 3.052109 TCCAGTAGGTACATCAGTGGGAT 60.052 47.826 12.15 0.00 34.37 3.85
1217 1221 5.148502 CCCTTATCCAGTAGGTACATCAGT 58.851 45.833 0.00 0.00 35.89 3.41
1240 1244 2.093869 TGAACATCCGGGTTAGCAGTAC 60.094 50.000 0.00 0.00 0.00 2.73
1298 1302 1.699656 CGCTGAGCAAACCATCTCCG 61.700 60.000 4.88 0.00 0.00 4.63
1379 1383 0.748005 CCTGTGGATTTACCCTGCCG 60.748 60.000 0.00 0.00 38.00 5.69
1406 1410 3.589288 AGAAGCCTCACCTTTTAGTCCAT 59.411 43.478 0.00 0.00 0.00 3.41
1426 1432 6.073058 GCGATGGCAATAACAATAGATTCAGA 60.073 38.462 0.00 0.00 39.62 3.27
1486 1493 0.179089 CTCAGGCGGTTCATCCTCTG 60.179 60.000 0.00 0.00 36.88 3.35
1488 1495 0.460987 CACTCAGGCGGTTCATCCTC 60.461 60.000 0.00 0.00 0.00 3.71
1499 1506 2.670934 CAGCACCCACACTCAGGC 60.671 66.667 0.00 0.00 0.00 4.85
1501 1508 1.598962 CCACAGCACCCACACTCAG 60.599 63.158 0.00 0.00 0.00 3.35
1521 1528 1.470098 CCGACAAGCAATTCTTCCCAG 59.530 52.381 0.00 0.00 31.27 4.45
1522 1529 1.073125 TCCGACAAGCAATTCTTCCCA 59.927 47.619 0.00 0.00 31.27 4.37
1526 1533 2.270352 TGGTCCGACAAGCAATTCTT 57.730 45.000 0.00 0.00 34.78 2.52
1533 1540 0.668535 AAGCTTTTGGTCCGACAAGC 59.331 50.000 12.12 12.12 41.72 4.01
1570 1579 7.933577 CCTTGCTGGTTTACTATGATATCTTCA 59.066 37.037 3.98 0.00 39.12 3.02
1580 1589 5.631119 ACAAGTTCCTTGCTGGTTTACTAT 58.369 37.500 3.96 0.00 44.43 2.12
1609 1618 9.001542 CCATCATGATTACAAACACCAAAAATT 57.998 29.630 5.16 0.00 0.00 1.82
1610 1619 8.156165 ACCATCATGATTACAAACACCAAAAAT 58.844 29.630 5.16 0.00 0.00 1.82
1611 1620 7.504403 ACCATCATGATTACAAACACCAAAAA 58.496 30.769 5.16 0.00 0.00 1.94
1613 1622 6.662865 ACCATCATGATTACAAACACCAAA 57.337 33.333 5.16 0.00 0.00 3.28
1614 1623 6.453943 CAACCATCATGATTACAAACACCAA 58.546 36.000 5.16 0.00 0.00 3.67
1615 1624 5.566429 GCAACCATCATGATTACAAACACCA 60.566 40.000 5.16 0.00 0.00 4.17
1616 1625 4.864247 GCAACCATCATGATTACAAACACC 59.136 41.667 5.16 0.00 0.00 4.16
1619 1628 5.953183 TCAGCAACCATCATGATTACAAAC 58.047 37.500 5.16 0.00 0.00 2.93
1639 1652 3.318839 TCCAAAGGCAAATCACAGTTCAG 59.681 43.478 0.00 0.00 0.00 3.02
1672 1686 7.687941 TCATTGTCTTTCTCCTAACCATTTC 57.312 36.000 0.00 0.00 0.00 2.17
1682 1696 6.795399 TGTTGAACTTTCATTGTCTTTCTCC 58.205 36.000 0.00 0.00 37.00 3.71
1691 1705 5.970612 TCGTGAACATGTTGAACTTTCATTG 59.029 36.000 17.58 3.43 37.00 2.82
1697 1711 5.499139 ACATTCGTGAACATGTTGAACTT 57.501 34.783 17.58 1.67 28.73 2.66
1700 1714 5.049749 CCACTACATTCGTGAACATGTTGAA 60.050 40.000 17.58 13.64 35.24 2.69
1702 1716 4.378356 CCCACTACATTCGTGAACATGTTG 60.378 45.833 17.58 2.51 35.24 3.33
1729 1743 0.394352 ATCAATTGACAGGACCCCGC 60.394 55.000 11.07 0.00 0.00 6.13
1730 1744 1.382522 CATCAATTGACAGGACCCCG 58.617 55.000 11.07 0.00 0.00 5.73
1731 1745 1.106285 GCATCAATTGACAGGACCCC 58.894 55.000 11.07 0.00 0.00 4.95
1732 1746 1.106285 GGCATCAATTGACAGGACCC 58.894 55.000 11.07 1.56 31.51 4.46
1733 1747 0.734889 CGGCATCAATTGACAGGACC 59.265 55.000 11.07 7.08 29.94 4.46
1734 1748 1.453155 ACGGCATCAATTGACAGGAC 58.547 50.000 11.07 4.83 29.94 3.85
1735 1749 2.198827 AACGGCATCAATTGACAGGA 57.801 45.000 11.07 0.00 29.94 3.86
1747 1761 4.582701 TTGAAAGACATGAAAACGGCAT 57.417 36.364 0.00 0.00 0.00 4.40
1751 1765 7.009999 TGGAAATGTTTGAAAGACATGAAAACG 59.990 33.333 0.00 0.00 37.76 3.60
1757 1771 8.991243 ATATGTGGAAATGTTTGAAAGACATG 57.009 30.769 0.00 0.00 37.76 3.21
1863 1883 0.178767 TGCGCATTGATAGCTCCAGT 59.821 50.000 5.66 0.00 0.00 4.00
1889 1909 1.289066 CTCTTGTCCGGTTGCTCGA 59.711 57.895 0.00 0.00 0.00 4.04
1899 1919 1.160137 GATGCACCACACTCTTGTCC 58.840 55.000 0.00 0.00 31.66 4.02
1929 1949 6.294176 CCTCACCAAGTGAATCAAAACTAAGG 60.294 42.308 0.00 0.00 42.26 2.69
2013 2033 2.008329 CTCTCAGCATTCAACCTGCTC 58.992 52.381 0.00 0.00 46.79 4.26
2020 2040 4.520492 GGTTTTCTTCCTCTCAGCATTCAA 59.480 41.667 0.00 0.00 0.00 2.69
2036 2056 6.891908 ACATACTATTTCCTGCATGGTTTTCT 59.108 34.615 0.00 0.00 37.07 2.52
2084 2104 9.220767 CCTACTTCTCATTTTAGCAGTAAGTTT 57.779 33.333 0.00 0.00 27.20 2.66
2091 2111 7.278868 CCTGTAACCTACTTCTCATTTTAGCAG 59.721 40.741 0.00 0.00 0.00 4.24
2106 2126 4.964593 TCCAAACTCAACCTGTAACCTAC 58.035 43.478 0.00 0.00 0.00 3.18
2116 2137 3.000925 CGTATACGCATCCAAACTCAACC 59.999 47.826 13.08 0.00 0.00 3.77
2143 2165 7.564660 TGAATTAATTCCAATACCATCCAAGCT 59.435 33.333 22.42 0.00 35.97 3.74
2184 2207 1.568504 TCTCGGCATCTGGTTTACCT 58.431 50.000 0.00 0.00 36.82 3.08
2392 2415 0.249741 AGGTTGACGTTGTTCTCCCG 60.250 55.000 0.00 0.00 0.00 5.14
2415 2438 6.318900 AGCTACCAATTATGCTGTAAACCTTC 59.681 38.462 0.00 0.00 34.19 3.46
2466 2489 6.315393 TGTTTCTGAGTGTCCTTTTAGTGAAC 59.685 38.462 0.00 0.00 0.00 3.18
2499 2522 2.460918 GCTTGCTCGCGACTAATCTTA 58.539 47.619 3.71 0.00 0.00 2.10
2531 2554 1.069765 ACCTGCAGTGTCTTCCGTG 59.930 57.895 13.81 0.00 0.00 4.94
2568 2591 2.424684 AGGAGAAGTCAGGGTCCTTT 57.575 50.000 0.00 0.00 35.84 3.11
2685 2708 2.049228 GTTCTGTACGTGGTGTCGAAG 58.951 52.381 0.00 0.00 34.70 3.79
2706 2729 4.996758 CCGAATGGCATGTCATACAGATTA 59.003 41.667 14.32 0.00 0.00 1.75
2862 2886 7.171653 TCAACCATTCACCTGTCAATATTGTA 58.828 34.615 14.97 5.36 0.00 2.41
2869 2893 3.820467 GTGATCAACCATTCACCTGTCAA 59.180 43.478 0.00 0.00 36.98 3.18
2871 2895 3.679389 AGTGATCAACCATTCACCTGTC 58.321 45.455 0.00 0.00 42.56 3.51
2883 2907 5.745227 TCCAAGGGAGATTTAGTGATCAAC 58.255 41.667 0.00 0.00 0.00 3.18
2919 2946 6.588719 TGGAAAATGAGTTGGGATACAAAG 57.411 37.500 0.00 0.00 41.58 2.77
2970 2998 7.324935 ACACAATTCGCCCGTATCATATTATA 58.675 34.615 0.00 0.00 0.00 0.98
2990 3018 5.950758 AGCATTGAATAAACGGTACACAA 57.049 34.783 0.00 0.00 0.00 3.33
3138 3166 0.104120 GCGGCCCAAGTGTTTCTTTT 59.896 50.000 0.00 0.00 33.63 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.