Multiple sequence alignment - TraesCS5B01G337700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G337700 chr5B 100.000 4472 0 0 1 4472 521146916 521151387 0.000000e+00 8259.0
1 TraesCS5B01G337700 chr5B 97.561 41 1 0 615 655 521147489 521147529 2.230000e-08 71.3
2 TraesCS5B01G337700 chr5B 97.561 41 1 0 574 614 521147530 521147570 2.230000e-08 71.3
3 TraesCS5B01G337700 chr5D 95.541 3880 136 19 615 4471 431603161 431607026 0.000000e+00 6172.0
4 TraesCS5B01G337700 chr5D 86.257 684 77 11 3667 4338 431613222 431613900 0.000000e+00 726.0
5 TraesCS5B01G337700 chr5D 87.179 234 27 3 3431 3663 431612943 431613174 3.430000e-66 263.0
6 TraesCS5B01G337700 chr5D 80.147 136 20 7 412 542 410424151 410424018 1.320000e-15 95.3
7 TraesCS5B01G337700 chr5A 95.148 3875 138 16 615 4470 546691982 546695825 0.000000e+00 6069.0
8 TraesCS5B01G337700 chr5A 94.839 3875 136 25 615 4471 546975521 546971693 0.000000e+00 5989.0
9 TraesCS5B01G337700 chr5A 83.771 838 98 21 3667 4472 546897786 546896955 0.000000e+00 760.0
10 TraesCS5B01G337700 chr5A 81.915 564 60 22 3665 4215 546699163 546699697 5.310000e-119 438.0
11 TraesCS5B01G337700 chr6B 92.435 542 29 6 1 542 41401670 41401141 0.000000e+00 763.0
12 TraesCS5B01G337700 chr4B 91.867 541 44 0 1 541 125683054 125682514 0.000000e+00 756.0
13 TraesCS5B01G337700 chr1B 87.657 559 47 6 1 540 331452003 331451448 8.160000e-177 630.0
14 TraesCS5B01G337700 chr3D 78.850 539 106 8 7 541 177488380 177487846 1.530000e-94 357.0
15 TraesCS5B01G337700 chr1A 78.928 541 102 11 7 542 98600297 98600830 1.530000e-94 357.0
16 TraesCS5B01G337700 chr1D 81.022 137 22 4 408 542 84730329 84730195 6.120000e-19 106.0
17 TraesCS5B01G337700 chr2D 79.851 134 21 6 412 541 436337072 436336941 4.760000e-15 93.5
18 TraesCS5B01G337700 chrUn 79.137 139 20 7 412 545 245921 245787 2.220000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G337700 chr5B 521146916 521151387 4471 False 2800.533333 8259 98.3740 1 4472 3 chr5B.!!$F1 4471
1 TraesCS5B01G337700 chr5D 431603161 431607026 3865 False 6172.000000 6172 95.5410 615 4471 1 chr5D.!!$F1 3856
2 TraesCS5B01G337700 chr5D 431612943 431613900 957 False 494.500000 726 86.7180 3431 4338 2 chr5D.!!$F2 907
3 TraesCS5B01G337700 chr5A 546971693 546975521 3828 True 5989.000000 5989 94.8390 615 4471 1 chr5A.!!$R2 3856
4 TraesCS5B01G337700 chr5A 546691982 546699697 7715 False 3253.500000 6069 88.5315 615 4470 2 chr5A.!!$F1 3855
5 TraesCS5B01G337700 chr5A 546896955 546897786 831 True 760.000000 760 83.7710 3667 4472 1 chr5A.!!$R1 805
6 TraesCS5B01G337700 chr6B 41401141 41401670 529 True 763.000000 763 92.4350 1 542 1 chr6B.!!$R1 541
7 TraesCS5B01G337700 chr4B 125682514 125683054 540 True 756.000000 756 91.8670 1 541 1 chr4B.!!$R1 540
8 TraesCS5B01G337700 chr1B 331451448 331452003 555 True 630.000000 630 87.6570 1 540 1 chr1B.!!$R1 539
9 TraesCS5B01G337700 chr3D 177487846 177488380 534 True 357.000000 357 78.8500 7 541 1 chr3D.!!$R1 534
10 TraesCS5B01G337700 chr1A 98600297 98600830 533 False 357.000000 357 78.9280 7 542 1 chr1A.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1005 0.178068 ATCCACGATTTCTGGACCCG 59.822 55.000 0.0 0.0 40.73 5.28 F
2331 2384 1.333619 TCCGAGTGCTTTTCTGCAAAC 59.666 47.619 0.0 0.0 45.12 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 2548 0.253044 AGGTAGTACGCCGTACCTCA 59.747 55.0 22.73 6.81 44.94 3.86 R
3976 4086 0.389166 CGTCAGAAGTGGAGGTGCTC 60.389 60.0 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 2.743718 CAGGACGGGACTGCTTGT 59.256 61.111 0.00 0.00 0.00 3.16
141 142 3.790416 TTGTGCTGCCACCCTCCAC 62.790 63.158 0.00 0.00 41.35 4.02
187 188 1.884075 ATACTGTTCGCGGCAGGTGA 61.884 55.000 26.40 16.09 38.22 4.02
287 288 9.295825 GAGGTCTCTGATCTTCTTAGATTATGA 57.704 37.037 0.00 0.00 41.23 2.15
292 293 9.985730 CTCTGATCTTCTTAGATTATGAAGCTT 57.014 33.333 0.00 0.00 41.23 3.74
296 297 6.573434 TCTTCTTAGATTATGAAGCTTGCGA 58.427 36.000 2.10 0.00 38.87 5.10
405 426 5.380043 CCAGCCCATGTAACTATCTTTCAT 58.620 41.667 0.00 0.00 0.00 2.57
423 444 3.657350 GGGCTTGGTGGTGGCCTA 61.657 66.667 3.32 0.00 44.70 3.93
565 587 9.662545 AAACTTGTGACAAGTTTTCAAAATTTG 57.337 25.926 37.07 14.72 45.20 2.32
566 588 8.600449 ACTTGTGACAAGTTTTCAAAATTTGA 57.400 26.923 24.14 4.03 38.04 2.69
589 611 7.105494 GAAAGCAACTTTCGAATTTTTAGGG 57.895 36.000 0.00 0.00 40.02 3.53
590 612 5.784578 AGCAACTTTCGAATTTTTAGGGT 57.215 34.783 0.00 0.00 0.00 4.34
591 613 5.528870 AGCAACTTTCGAATTTTTAGGGTG 58.471 37.500 0.00 0.00 0.00 4.61
592 614 5.300792 AGCAACTTTCGAATTTTTAGGGTGA 59.699 36.000 0.00 0.00 0.00 4.02
593 615 5.980715 GCAACTTTCGAATTTTTAGGGTGAA 59.019 36.000 0.00 0.00 0.00 3.18
594 616 6.477360 GCAACTTTCGAATTTTTAGGGTGAAA 59.523 34.615 0.00 0.00 0.00 2.69
595 617 7.170828 GCAACTTTCGAATTTTTAGGGTGAAAT 59.829 33.333 0.00 0.00 0.00 2.17
596 618 9.685828 CAACTTTCGAATTTTTAGGGTGAAATA 57.314 29.630 0.00 0.00 0.00 1.40
601 623 8.220755 TCGAATTTTTAGGGTGAAATATCAGG 57.779 34.615 0.00 0.00 35.88 3.86
602 624 7.284489 TCGAATTTTTAGGGTGAAATATCAGGG 59.716 37.037 0.00 0.00 35.88 4.45
603 625 6.731292 ATTTTTAGGGTGAAATATCAGGGC 57.269 37.500 0.00 0.00 35.88 5.19
604 626 4.871871 TTTAGGGTGAAATATCAGGGCA 57.128 40.909 0.00 0.00 35.88 5.36
605 627 4.871871 TTAGGGTGAAATATCAGGGCAA 57.128 40.909 0.00 0.00 35.88 4.52
606 628 3.756082 AGGGTGAAATATCAGGGCAAA 57.244 42.857 0.00 0.00 35.88 3.68
607 629 3.365472 AGGGTGAAATATCAGGGCAAAC 58.635 45.455 0.00 0.00 35.88 2.93
608 630 3.011708 AGGGTGAAATATCAGGGCAAACT 59.988 43.478 0.00 0.00 35.88 2.66
609 631 3.769300 GGGTGAAATATCAGGGCAAACTT 59.231 43.478 0.00 0.00 35.88 2.66
610 632 4.142160 GGGTGAAATATCAGGGCAAACTTC 60.142 45.833 0.00 0.00 35.88 3.01
611 633 4.142160 GGTGAAATATCAGGGCAAACTTCC 60.142 45.833 0.00 0.00 35.88 3.46
612 634 3.694072 TGAAATATCAGGGCAAACTTCCG 59.306 43.478 0.00 0.00 0.00 4.30
613 635 2.348411 ATATCAGGGCAAACTTCCGG 57.652 50.000 0.00 0.00 0.00 5.14
825 863 3.118454 CGCCGACGCCTGAAACAT 61.118 61.111 0.00 0.00 0.00 2.71
907 953 3.402681 CAGTCCCCGGCCACTGAT 61.403 66.667 21.06 0.00 42.37 2.90
958 1005 0.178068 ATCCACGATTTCTGGACCCG 59.822 55.000 0.00 0.00 40.73 5.28
1180 1233 3.142838 CCGAGGCTTGCCCCAATG 61.143 66.667 8.17 0.00 0.00 2.82
1181 1234 3.830192 CGAGGCTTGCCCCAATGC 61.830 66.667 8.17 0.00 0.00 3.56
1182 1235 3.830192 GAGGCTTGCCCCAATGCG 61.830 66.667 8.17 0.00 0.00 4.73
1253 1306 2.203773 GCAAAGGGGGAAGGGCAA 60.204 61.111 0.00 0.00 0.00 4.52
1264 1317 3.086764 AAGGGCAAGGGCAGGTTGT 62.087 57.895 0.00 0.00 43.71 3.32
1779 1832 2.126882 TCAGATACAGGGTTGGATGGG 58.873 52.381 0.00 0.00 0.00 4.00
2046 2099 7.613801 ACACTCATCTCACTATACAGAGAAAGT 59.386 37.037 0.00 0.00 43.47 2.66
2181 2234 2.485814 CAGTAAAGCAGAAGCCCTTGTC 59.514 50.000 0.00 0.00 43.56 3.18
2223 2276 3.741075 GCCTGGTGATCGATGAATACACA 60.741 47.826 0.54 0.00 33.82 3.72
2331 2384 1.333619 TCCGAGTGCTTTTCTGCAAAC 59.666 47.619 0.00 0.00 45.12 2.93
2370 2423 3.262405 AGAAAGGGTACATAAACCTCGCA 59.738 43.478 0.00 0.00 39.65 5.10
2385 2438 4.585879 ACCTCGCAGAAAAGGCTTTTATA 58.414 39.130 24.15 6.66 36.01 0.98
2494 2547 0.835276 TGAGATAGCTGCTGGCATGT 59.165 50.000 13.43 0.00 44.79 3.21
2495 2548 1.211212 TGAGATAGCTGCTGGCATGTT 59.789 47.619 13.43 0.00 44.79 2.71
2919 2972 7.992754 AAAGACATACAAGCTTCTGAAATCT 57.007 32.000 0.00 0.00 0.00 2.40
3226 3279 7.613022 AGGCTGTGAAAATATTTCAGAAGATGA 59.387 33.333 15.85 0.00 35.62 2.92
3249 3302 1.167851 CATCGAGCACACCACCAAAT 58.832 50.000 0.00 0.00 0.00 2.32
3304 3357 8.383318 TCTAGTGAAAGAAGGAGTTTCAAATG 57.617 34.615 0.03 0.00 43.68 2.32
3343 3396 3.754323 AGAGTCTCTCAGAAGGTGTAACG 59.246 47.826 0.00 0.00 32.26 3.18
3404 3457 4.971282 TCTGGTTGTAAGATCAGATGGGAT 59.029 41.667 0.00 0.00 32.10 3.85
3504 3557 6.206243 AGTCCAGAACTGATTTCAACTGATTG 59.794 38.462 3.19 0.00 36.65 2.67
3564 3617 3.923461 GCTGTACTGTAAGAAGAGCACAG 59.077 47.826 1.46 0.00 44.20 3.66
3663 3717 2.298729 TGCCTTTCCAATGGTGTAAAGC 59.701 45.455 0.00 0.00 0.00 3.51
3679 3782 6.183360 GGTGTAAAGCTATAACTCCCAGATGA 60.183 42.308 0.00 0.00 0.00 2.92
3735 3839 0.526211 CACTTGGACCGACGATCTGA 59.474 55.000 0.00 0.00 0.00 3.27
3810 3916 7.901029 TCAGAACTCAGTTGAGATAGAATTGT 58.099 34.615 15.63 0.00 44.74 2.71
3864 3970 4.454504 CGTAAACTAAGTTGCCCTCACAAT 59.545 41.667 0.00 0.00 0.00 2.71
3929 4037 6.695278 TGTTAATGACTTACTTTTGCTGCAAC 59.305 34.615 15.72 1.39 0.00 4.17
3998 4108 1.810412 GCACCTCCACTTCTGACGTTT 60.810 52.381 0.00 0.00 0.00 3.60
4244 4375 0.654472 GTTGCTGTCTGACGTTTGCG 60.654 55.000 2.98 0.00 44.93 4.85
4298 4431 3.421844 GCCTGGTCTTGAATGTAAAGGT 58.578 45.455 0.00 0.00 0.00 3.50
4361 4496 4.755123 TGCAGACTACAAGCCTAAAAACTC 59.245 41.667 0.00 0.00 0.00 3.01
4407 4544 4.335416 AGCTGCTAAATTCAGTGCCTTAA 58.665 39.130 0.00 0.00 34.21 1.85
4415 4552 7.975616 GCTAAATTCAGTGCCTTAATTTCATCA 59.024 33.333 9.13 0.00 35.20 3.07
4423 4560 4.759693 TGCCTTAATTTCATCAGTCAACGT 59.240 37.500 0.00 0.00 0.00 3.99
4434 4571 6.655062 TCATCAGTCAACGTTTAAACATGAC 58.345 36.000 29.30 29.30 41.73 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.478631 TGATCGATGCTCTCCACTGT 58.521 50.000 0.54 0.00 0.00 3.55
141 142 1.227973 GCCTCCCATAAGAAGCGGG 60.228 63.158 0.00 0.00 41.76 6.13
143 144 0.755686 AGAGCCTCCCATAAGAAGCG 59.244 55.000 0.00 0.00 0.00 4.68
187 188 4.478317 TCCTCACCTTCCATAATCCAACAT 59.522 41.667 0.00 0.00 0.00 2.71
557 579 8.825064 AATTCGAAAGTTGCTTTCAAATTTTG 57.175 26.923 18.05 9.21 46.45 2.44
558 580 9.838975 AAAATTCGAAAGTTGCTTTCAAATTTT 57.161 22.222 24.85 24.85 46.81 1.82
565 587 6.700081 ACCCTAAAAATTCGAAAGTTGCTTTC 59.300 34.615 0.00 10.58 44.29 2.62
566 588 6.478673 CACCCTAAAAATTCGAAAGTTGCTTT 59.521 34.615 0.00 0.00 36.29 3.51
567 589 5.983118 CACCCTAAAAATTCGAAAGTTGCTT 59.017 36.000 0.00 0.00 0.00 3.91
568 590 5.300792 TCACCCTAAAAATTCGAAAGTTGCT 59.699 36.000 0.00 0.00 0.00 3.91
569 591 5.525199 TCACCCTAAAAATTCGAAAGTTGC 58.475 37.500 0.00 0.00 0.00 4.17
570 592 7.995463 TTTCACCCTAAAAATTCGAAAGTTG 57.005 32.000 0.00 0.00 0.00 3.16
575 597 8.682710 CCTGATATTTCACCCTAAAAATTCGAA 58.317 33.333 0.00 0.00 0.00 3.71
576 598 7.284489 CCCTGATATTTCACCCTAAAAATTCGA 59.716 37.037 0.00 0.00 0.00 3.71
577 599 7.425606 CCCTGATATTTCACCCTAAAAATTCG 58.574 38.462 0.00 0.00 0.00 3.34
578 600 7.147742 TGCCCTGATATTTCACCCTAAAAATTC 60.148 37.037 0.00 0.00 0.00 2.17
579 601 6.671779 TGCCCTGATATTTCACCCTAAAAATT 59.328 34.615 0.00 0.00 0.00 1.82
580 602 6.201591 TGCCCTGATATTTCACCCTAAAAAT 58.798 36.000 0.00 0.00 0.00 1.82
581 603 5.584913 TGCCCTGATATTTCACCCTAAAAA 58.415 37.500 0.00 0.00 0.00 1.94
582 604 5.199982 TGCCCTGATATTTCACCCTAAAA 57.800 39.130 0.00 0.00 0.00 1.52
583 605 4.871871 TGCCCTGATATTTCACCCTAAA 57.128 40.909 0.00 0.00 0.00 1.85
584 606 4.871871 TTGCCCTGATATTTCACCCTAA 57.128 40.909 0.00 0.00 0.00 2.69
585 607 4.229582 AGTTTGCCCTGATATTTCACCCTA 59.770 41.667 0.00 0.00 0.00 3.53
586 608 3.011708 AGTTTGCCCTGATATTTCACCCT 59.988 43.478 0.00 0.00 0.00 4.34
587 609 3.365472 AGTTTGCCCTGATATTTCACCC 58.635 45.455 0.00 0.00 0.00 4.61
588 610 4.142160 GGAAGTTTGCCCTGATATTTCACC 60.142 45.833 0.00 0.00 0.00 4.02
589 611 4.438744 CGGAAGTTTGCCCTGATATTTCAC 60.439 45.833 0.00 0.00 0.00 3.18
590 612 3.694072 CGGAAGTTTGCCCTGATATTTCA 59.306 43.478 0.00 0.00 0.00 2.69
591 613 3.066760 CCGGAAGTTTGCCCTGATATTTC 59.933 47.826 0.00 0.00 0.00 2.17
592 614 3.023832 CCGGAAGTTTGCCCTGATATTT 58.976 45.455 0.00 0.00 0.00 1.40
593 615 2.654863 CCGGAAGTTTGCCCTGATATT 58.345 47.619 0.00 0.00 0.00 1.28
594 616 1.750682 GCCGGAAGTTTGCCCTGATAT 60.751 52.381 5.05 0.00 0.00 1.63
595 617 0.393808 GCCGGAAGTTTGCCCTGATA 60.394 55.000 5.05 0.00 0.00 2.15
596 618 1.678970 GCCGGAAGTTTGCCCTGAT 60.679 57.895 5.05 0.00 0.00 2.90
597 619 2.282180 GCCGGAAGTTTGCCCTGA 60.282 61.111 5.05 0.00 0.00 3.86
598 620 1.463553 AAAGCCGGAAGTTTGCCCTG 61.464 55.000 5.05 0.00 0.00 4.45
599 621 1.152546 AAAGCCGGAAGTTTGCCCT 60.153 52.632 5.05 0.00 0.00 5.19
600 622 1.289066 GAAAGCCGGAAGTTTGCCC 59.711 57.895 5.05 0.00 0.00 5.36
601 623 1.081442 CGAAAGCCGGAAGTTTGCC 60.081 57.895 5.05 0.00 33.91 4.52
602 624 0.309612 TTCGAAAGCCGGAAGTTTGC 59.690 50.000 5.05 0.00 39.14 3.68
603 625 2.766970 TTTCGAAAGCCGGAAGTTTG 57.233 45.000 5.05 0.00 39.14 2.93
604 626 4.316205 AAATTTCGAAAGCCGGAAGTTT 57.684 36.364 16.80 6.40 40.70 2.66
605 627 4.316205 AAAATTTCGAAAGCCGGAAGTT 57.684 36.364 16.80 0.01 44.82 2.66
606 628 4.082949 CCTAAAATTTCGAAAGCCGGAAGT 60.083 41.667 16.80 0.00 39.45 3.01
607 629 4.412207 CCTAAAATTTCGAAAGCCGGAAG 58.588 43.478 16.80 8.38 39.45 3.46
608 630 3.191791 CCCTAAAATTTCGAAAGCCGGAA 59.808 43.478 16.80 0.00 40.54 4.30
609 631 2.750712 CCCTAAAATTTCGAAAGCCGGA 59.249 45.455 16.80 0.00 39.14 5.14
610 632 2.490509 ACCCTAAAATTTCGAAAGCCGG 59.509 45.455 16.80 11.18 39.14 6.13
611 633 3.189702 TCACCCTAAAATTTCGAAAGCCG 59.810 43.478 16.80 3.08 40.25 5.52
612 634 4.776795 TCACCCTAAAATTTCGAAAGCC 57.223 40.909 16.80 0.00 0.00 4.35
613 635 8.926715 ATATTTCACCCTAAAATTTCGAAAGC 57.073 30.769 16.80 0.00 0.00 3.51
958 1005 1.143969 CGTGAGTTCCGCCGGTATTC 61.144 60.000 1.63 0.00 0.00 1.75
1020 1067 2.266055 GGAGCACGGTGGAGGAAG 59.734 66.667 10.60 0.00 0.00 3.46
1054 1107 3.257561 CGACTGCGGATTGAGCGG 61.258 66.667 0.00 0.00 45.86 5.52
1353 1406 3.847602 CTCTCCCGGCTGCTCAGG 61.848 72.222 0.00 0.88 0.00 3.86
1779 1832 7.403346 AGGTGTACAAGCTATAGCAAAGATGC 61.403 42.308 26.07 11.00 43.50 3.91
2046 2099 6.071784 AGTGCTCTGCAACATCAATTTCATTA 60.072 34.615 0.00 0.00 41.47 1.90
2181 2234 2.160417 GCCACTCTCGTCCATTTCTTTG 59.840 50.000 0.00 0.00 0.00 2.77
2223 2276 2.310779 TCCTGGTTAGAGCTGACTGT 57.689 50.000 0.00 0.00 0.00 3.55
2331 2384 4.873827 CCTTTCTTCCCAAATGCATCAATG 59.126 41.667 0.00 0.00 0.00 2.82
2385 2438 1.661463 TCTTCCTCTCCAGGCAACAT 58.339 50.000 0.00 0.00 40.12 2.71
2494 2547 1.094785 GGTAGTACGCCGTACCTCAA 58.905 55.000 22.73 4.68 39.58 3.02
2495 2548 0.253044 AGGTAGTACGCCGTACCTCA 59.747 55.000 22.73 6.81 44.94 3.86
2662 2715 3.004171 CAACCATGTGCAAATTCCCATG 58.996 45.455 5.89 5.89 35.56 3.66
2898 2951 9.155975 TCTAAAGATTTCAGAAGCTTGTATGTC 57.844 33.333 2.10 0.00 40.39 3.06
2919 2972 7.335924 GCATAAAGGTTGGTGTCAGTATCTAAA 59.664 37.037 0.00 0.00 0.00 1.85
3226 3279 1.746615 GTGGTGTGCTCGATGCCAT 60.747 57.895 4.73 0.00 42.00 4.40
3249 3302 7.422399 GTTTTAGTGCCTTGAAAGTTACATCA 58.578 34.615 0.00 0.00 0.00 3.07
3304 3357 6.597280 AGAGACTCTAATTTTGCAATCTCACC 59.403 38.462 19.29 0.33 34.97 4.02
3404 3457 5.057843 ACCCATAGTATGTCGAGAGGTAA 57.942 43.478 9.28 0.00 0.00 2.85
3504 3557 7.750229 TGGTGGCATATCAATAAAGATTCTC 57.250 36.000 0.00 0.00 0.00 2.87
3564 3617 5.884792 AGGTTCTCATTTTGAGGATGACATC 59.115 40.000 6.91 6.91 44.39 3.06
3663 3717 9.270640 CTTTTGAAGATCATCTGGGAGTTATAG 57.729 37.037 0.00 0.00 0.00 1.31
3735 3839 6.406400 CCTCTTTCGATTCATAGACTGAAGGT 60.406 42.308 0.00 0.00 46.71 3.50
3787 3893 9.566432 AAAACAATTCTATCTCAACTGAGTTCT 57.434 29.630 6.61 0.00 42.60 3.01
3810 3916 4.165372 ACACACTTTACCTCTCCCTCAAAA 59.835 41.667 0.00 0.00 0.00 2.44
3864 3970 8.205512 TCTGTGAACAAGTACTACCAACATTTA 58.794 33.333 0.00 0.00 0.00 1.40
3929 4037 9.937175 CAAGTTAAAAGGAACTACAGAGAAAAG 57.063 33.333 0.00 0.00 38.49 2.27
3961 4071 4.712476 AGGTGCTCATTCTGGCTATTAAG 58.288 43.478 0.00 0.00 0.00 1.85
3962 4072 4.444876 GGAGGTGCTCATTCTGGCTATTAA 60.445 45.833 0.00 0.00 31.08 1.40
3963 4073 3.071602 GGAGGTGCTCATTCTGGCTATTA 59.928 47.826 0.00 0.00 31.08 0.98
3964 4074 2.158696 GGAGGTGCTCATTCTGGCTATT 60.159 50.000 0.00 0.00 31.08 1.73
3976 4086 0.389166 CGTCAGAAGTGGAGGTGCTC 60.389 60.000 0.00 0.00 0.00 4.26
3998 4108 2.906389 GTCCAGATAGGGCATATGGTCA 59.094 50.000 4.56 0.00 44.94 4.02
4137 4259 7.718753 AGATGAGGAAGAATGCTTAGTAAATGG 59.281 37.037 0.00 0.00 33.61 3.16
4225 4356 0.654472 CGCAAACGTCAGACAGCAAC 60.654 55.000 0.41 0.00 33.53 4.17
4244 4375 8.616076 GCCAACTGATGATATTATAGTATTGCC 58.384 37.037 0.00 0.00 0.00 4.52
4280 4413 4.469657 AGCAACCTTTACATTCAAGACCA 58.530 39.130 0.00 0.00 0.00 4.02
4298 4431 7.946207 AGAAGATTCTGAAGATCGTATAGCAA 58.054 34.615 0.00 0.00 35.89 3.91
4361 4496 9.425577 GCTAGGATAGTAGTTAAATTGGCTAAG 57.574 37.037 0.00 0.00 41.93 2.18
4407 4544 8.349245 TCATGTTTAAACGTTGACTGATGAAAT 58.651 29.630 10.40 0.00 0.00 2.17
4415 4552 8.188139 AGAAATTGTCATGTTTAAACGTTGACT 58.812 29.630 32.26 22.25 41.43 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.