Multiple sequence alignment - TraesCS5B01G337400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G337400 chr5B 100.000 2699 0 0 1 2699 520971850 520969152 0.000000e+00 4985.0
1 TraesCS5B01G337400 chr5B 87.460 311 30 7 1298 1605 521032338 521032034 1.540000e-92 350.0
2 TraesCS5B01G337400 chr5B 89.437 142 13 2 1025 1166 521032558 521032419 7.680000e-41 178.0
3 TraesCS5B01G337400 chr5D 92.076 1262 78 9 520 1774 431252995 431251749 0.000000e+00 1757.0
4 TraesCS5B01G337400 chr5D 94.932 296 15 0 2404 2699 431237125 431236830 5.260000e-127 464.0
5 TraesCS5B01G337400 chr5D 93.311 299 19 1 1933 2230 431251597 431251299 8.870000e-120 440.0
6 TraesCS5B01G337400 chr5D 88.561 271 22 8 1338 1605 431402109 431401845 1.210000e-83 320.0
7 TraesCS5B01G337400 chr5D 90.714 140 11 2 1025 1164 431402362 431402225 4.590000e-43 185.0
8 TraesCS5B01G337400 chr5D 88.571 140 12 3 22 161 431253397 431253262 1.660000e-37 167.0
9 TraesCS5B01G337400 chr5D 81.696 224 15 14 239 437 431253218 431252996 2.150000e-36 163.0
10 TraesCS5B01G337400 chr5D 89.706 68 7 0 432 499 481284520 481284587 1.330000e-13 87.9
11 TraesCS5B01G337400 chr5A 89.056 1261 101 22 543 1774 546564988 546563736 0.000000e+00 1530.0
12 TraesCS5B01G337400 chr5A 92.754 345 20 4 2339 2680 546563168 546562826 6.710000e-136 494.0
13 TraesCS5B01G337400 chr5A 91.722 302 21 4 1933 2230 546563666 546563365 1.490000e-112 416.0
14 TraesCS5B01G337400 chr5A 85.802 324 36 9 1285 1605 546576360 546576044 4.310000e-88 335.0
15 TraesCS5B01G337400 chr5A 90.000 140 12 2 1025 1164 546576562 546576425 2.130000e-41 180.0
16 TraesCS5B01G337400 chr3A 85.263 285 37 5 1949 2229 650430794 650431077 3.400000e-74 289.0
17 TraesCS5B01G337400 chr4D 93.182 132 8 1 1030 1161 508529746 508529616 2.740000e-45 193.0
18 TraesCS5B01G337400 chr7D 90.370 135 12 1 1032 1166 63398423 63398556 2.760000e-40 176.0
19 TraesCS5B01G337400 chr7B 90.370 135 12 1 1032 1166 3721703 3721836 2.760000e-40 176.0
20 TraesCS5B01G337400 chr7B 85.882 85 11 1 433 516 138750086 138750002 3.700000e-14 89.8
21 TraesCS5B01G337400 chr7A 89.630 135 13 1 1032 1166 66173988 66174121 1.280000e-38 171.0
22 TraesCS5B01G337400 chr2B 92.754 69 5 0 431 499 729142209 729142141 1.710000e-17 100.0
23 TraesCS5B01G337400 chr2B 89.706 68 7 0 432 499 478114799 478114732 1.330000e-13 87.9
24 TraesCS5B01G337400 chr3B 86.517 89 9 2 430 516 412451466 412451379 7.960000e-16 95.3
25 TraesCS5B01G337400 chr1A 93.750 64 3 1 431 493 584318592 584318655 7.960000e-16 95.3
26 TraesCS5B01G337400 chr4A 93.333 60 4 0 434 493 736112492 736112551 3.700000e-14 89.8
27 TraesCS5B01G337400 chr4A 91.667 60 5 0 434 493 734874197 734874256 1.720000e-12 84.2
28 TraesCS5B01G337400 chr6B 89.394 66 7 0 434 499 715389936 715389871 1.720000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G337400 chr5B 520969152 520971850 2698 True 4985.000000 4985 100.000000 1 2699 1 chr5B.!!$R1 2698
1 TraesCS5B01G337400 chr5B 521032034 521032558 524 True 264.000000 350 88.448500 1025 1605 2 chr5B.!!$R2 580
2 TraesCS5B01G337400 chr5D 431251299 431253397 2098 True 631.750000 1757 88.913500 22 2230 4 chr5D.!!$R2 2208
3 TraesCS5B01G337400 chr5D 431401845 431402362 517 True 252.500000 320 89.637500 1025 1605 2 chr5D.!!$R3 580
4 TraesCS5B01G337400 chr5A 546562826 546564988 2162 True 813.333333 1530 91.177333 543 2680 3 chr5A.!!$R1 2137
5 TraesCS5B01G337400 chr5A 546576044 546576562 518 True 257.500000 335 87.901000 1025 1605 2 chr5A.!!$R2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.038892 TTCTTGTCACGGTACTCGGC 60.039 55.0 8.31 0.0 44.45 5.54 F
548 573 0.463620 GCTCACAAGCCCTAGAGAGG 59.536 60.0 0.00 0.0 43.10 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1246 0.680280 ACGTCGTAGCAGTCCTGGAT 60.680 55.0 0.0 0.0 0.00 3.41 R
2282 2460 0.105964 CATCGGATCGGCTTAACCCA 59.894 55.0 0.0 0.0 33.26 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.528674 GCTCCATGACAGCATCGT 57.471 55.556 10.78 0.00 36.82 3.73
18 19 2.305405 GCTCCATGACAGCATCGTC 58.695 57.895 10.78 0.00 36.82 4.20
25 26 0.108186 TGACAGCATCGTCATCCACC 60.108 55.000 0.02 0.00 40.94 4.61
31 32 3.014085 ATCGTCATCCACCGCCGTT 62.014 57.895 0.00 0.00 0.00 4.44
32 33 3.487202 CGTCATCCACCGCCGTTG 61.487 66.667 0.00 0.00 0.00 4.10
39 40 2.326550 CACCGCCGTTGTTGACAC 59.673 61.111 0.00 0.00 0.00 3.67
43 44 2.326550 GCCGTTGTTGACACGTGG 59.673 61.111 21.57 1.66 0.00 4.94
58 59 1.342174 ACGTGGCATATACCCTTACCG 59.658 52.381 0.00 0.00 0.00 4.02
65 66 4.321824 GGCATATACCCTTACCGAGAACTC 60.322 50.000 0.00 0.00 0.00 3.01
99 100 6.540914 CCGAGAGCCTTTTTGTTTATATACCA 59.459 38.462 0.00 0.00 0.00 3.25
102 103 7.772166 AGAGCCTTTTTGTTTATATACCAAGC 58.228 34.615 0.00 0.00 0.00 4.01
104 105 6.152154 AGCCTTTTTGTTTATATACCAAGCGT 59.848 34.615 0.00 0.00 0.00 5.07
110 111 7.690952 TTGTTTATATACCAAGCGTCCTTTT 57.309 32.000 0.00 0.00 0.00 2.27
155 156 6.463483 GCACTCGGCTTATTTATAAGGTAC 57.537 41.667 10.59 0.00 40.01 3.34
156 157 6.221659 GCACTCGGCTTATTTATAAGGTACT 58.778 40.000 10.59 0.00 40.01 2.73
157 158 6.145696 GCACTCGGCTTATTTATAAGGTACTG 59.854 42.308 10.59 1.54 40.01 2.74
158 159 7.208080 CACTCGGCTTATTTATAAGGTACTGT 58.792 38.462 10.59 0.00 40.86 3.55
159 160 8.355169 CACTCGGCTTATTTATAAGGTACTGTA 58.645 37.037 10.59 0.00 40.86 2.74
160 161 8.917088 ACTCGGCTTATTTATAAGGTACTGTAA 58.083 33.333 10.59 0.00 40.86 2.41
161 162 9.189723 CTCGGCTTATTTATAAGGTACTGTAAC 57.810 37.037 10.59 0.00 40.86 2.50
162 163 8.917088 TCGGCTTATTTATAAGGTACTGTAACT 58.083 33.333 0.00 0.00 40.86 2.24
163 164 9.189723 CGGCTTATTTATAAGGTACTGTAACTC 57.810 37.037 5.74 0.00 40.86 3.01
164 165 9.189723 GGCTTATTTATAAGGTACTGTAACTCG 57.810 37.037 5.74 0.00 40.86 4.18
172 173 2.493278 GGTACTGTAACTCGGTAAGCCA 59.507 50.000 0.00 0.00 39.29 4.75
188 189 1.260544 GCCAAGGCTTCCATTTCTGT 58.739 50.000 3.29 0.00 38.26 3.41
197 198 3.243068 GCTTCCATTTCTGTCGTGTGTTT 60.243 43.478 0.00 0.00 0.00 2.83
198 199 4.527564 CTTCCATTTCTGTCGTGTGTTTC 58.472 43.478 0.00 0.00 0.00 2.78
201 202 4.035091 TCCATTTCTGTCGTGTGTTTCTTG 59.965 41.667 0.00 0.00 0.00 3.02
203 204 4.593597 TTTCTGTCGTGTGTTTCTTGTC 57.406 40.909 0.00 0.00 0.00 3.18
204 205 3.239587 TCTGTCGTGTGTTTCTTGTCA 57.760 42.857 0.00 0.00 0.00 3.58
205 206 2.927477 TCTGTCGTGTGTTTCTTGTCAC 59.073 45.455 0.00 0.00 35.43 3.67
207 208 3.798506 CGTGTGTTTCTTGTCACGG 57.201 52.632 8.36 0.00 46.12 4.94
208 209 1.003851 CGTGTGTTTCTTGTCACGGT 58.996 50.000 8.36 0.00 46.12 4.83
209 210 2.195096 CGTGTGTTTCTTGTCACGGTA 58.805 47.619 8.36 0.00 46.12 4.02
211 212 3.192466 GTGTGTTTCTTGTCACGGTACT 58.808 45.455 0.00 0.00 37.38 2.73
212 213 3.244579 GTGTGTTTCTTGTCACGGTACTC 59.755 47.826 0.00 0.00 37.38 2.59
213 214 2.470257 GTGTTTCTTGTCACGGTACTCG 59.530 50.000 0.00 0.00 45.88 4.18
214 215 2.056577 GTTTCTTGTCACGGTACTCGG 58.943 52.381 8.31 0.00 44.45 4.63
215 216 0.038892 TTCTTGTCACGGTACTCGGC 60.039 55.000 8.31 0.00 44.45 5.54
216 217 0.892358 TCTTGTCACGGTACTCGGCT 60.892 55.000 8.31 0.00 44.45 5.52
217 218 0.806868 CTTGTCACGGTACTCGGCTA 59.193 55.000 8.31 0.00 44.45 3.93
218 219 0.806868 TTGTCACGGTACTCGGCTAG 59.193 55.000 8.31 0.00 44.45 3.42
219 220 1.028330 TGTCACGGTACTCGGCTAGG 61.028 60.000 8.31 0.00 44.45 3.02
220 221 1.452651 TCACGGTACTCGGCTAGGG 60.453 63.158 8.31 0.00 44.45 3.53
221 222 1.452651 CACGGTACTCGGCTAGGGA 60.453 63.158 8.31 0.00 44.45 4.20
222 223 0.822532 CACGGTACTCGGCTAGGGAT 60.823 60.000 8.31 0.00 44.45 3.85
223 224 0.822532 ACGGTACTCGGCTAGGGATG 60.823 60.000 8.31 0.00 44.45 3.51
224 225 0.822532 CGGTACTCGGCTAGGGATGT 60.823 60.000 0.00 0.00 34.75 3.06
225 226 1.544093 CGGTACTCGGCTAGGGATGTA 60.544 57.143 0.00 0.00 34.75 2.29
226 227 2.590821 GGTACTCGGCTAGGGATGTAA 58.409 52.381 0.00 0.00 0.00 2.41
227 228 2.557490 GGTACTCGGCTAGGGATGTAAG 59.443 54.545 0.00 0.00 0.00 2.34
228 229 2.456073 ACTCGGCTAGGGATGTAAGT 57.544 50.000 0.00 0.00 0.00 2.24
229 230 2.308690 ACTCGGCTAGGGATGTAAGTC 58.691 52.381 0.00 0.00 0.00 3.01
230 231 1.267261 CTCGGCTAGGGATGTAAGTCG 59.733 57.143 0.00 0.00 39.61 4.18
231 232 1.134007 TCGGCTAGGGATGTAAGTCGA 60.134 52.381 0.00 0.00 44.32 4.20
232 233 1.267261 CGGCTAGGGATGTAAGTCGAG 59.733 57.143 0.00 0.00 40.66 4.04
233 234 2.308690 GGCTAGGGATGTAAGTCGAGT 58.691 52.381 0.00 0.00 0.00 4.18
234 235 2.694109 GGCTAGGGATGTAAGTCGAGTT 59.306 50.000 10.90 10.90 0.00 3.01
235 236 3.132467 GGCTAGGGATGTAAGTCGAGTTT 59.868 47.826 11.42 0.00 0.00 2.66
236 237 4.361420 GCTAGGGATGTAAGTCGAGTTTC 58.639 47.826 11.42 6.74 0.00 2.78
237 238 4.098196 GCTAGGGATGTAAGTCGAGTTTCT 59.902 45.833 11.42 3.06 0.00 2.52
256 257 5.545658 TTCTGAAATATTGCACTCGGTTC 57.454 39.130 0.00 0.00 0.00 3.62
264 265 0.884259 TGCACTCGGTTCACACATGG 60.884 55.000 0.00 0.00 0.00 3.66
265 266 1.577328 GCACTCGGTTCACACATGGG 61.577 60.000 0.00 0.00 0.00 4.00
276 277 1.285641 CACATGGGTGCACGGAAAC 59.714 57.895 11.45 0.00 38.37 2.78
277 278 1.152860 ACATGGGTGCACGGAAACA 60.153 52.632 11.45 5.07 0.00 2.83
278 279 1.285641 CATGGGTGCACGGAAACAC 59.714 57.895 11.45 0.00 36.03 3.32
279 280 2.258013 ATGGGTGCACGGAAACACG 61.258 57.895 11.45 0.00 37.68 4.49
328 330 7.980099 TGCAAATGATTGACATAATTACATGCA 59.020 29.630 0.00 0.00 38.94 3.96
329 331 8.270799 GCAAATGATTGACATAATTACATGCAC 58.729 33.333 0.00 0.00 38.94 4.57
352 371 3.629142 AGTATACCCTTGGTGCTTGTC 57.371 47.619 0.00 0.00 36.19 3.18
366 385 2.480037 TGCTTGTCTGCGTGAAACATAG 59.520 45.455 0.00 0.00 35.74 2.23
372 391 5.396484 TGTCTGCGTGAAACATAGTACTAC 58.604 41.667 4.31 0.00 35.74 2.73
388 410 5.413499 AGTACTACGATGGTTTTGCGTAAT 58.587 37.500 0.00 0.00 39.62 1.89
389 411 4.852609 ACTACGATGGTTTTGCGTAATC 57.147 40.909 0.00 0.00 39.62 1.75
392 414 2.160813 ACGATGGTTTTGCGTAATCACC 59.839 45.455 7.84 7.84 36.37 4.02
395 417 1.801771 TGGTTTTGCGTAATCACCTCG 59.198 47.619 13.83 0.00 0.00 4.63
397 419 2.676342 GGTTTTGCGTAATCACCTCGAT 59.324 45.455 7.60 0.00 35.12 3.59
402 424 1.649171 GCGTAATCACCTCGATATGCG 59.351 52.381 0.00 0.00 42.69 4.73
437 462 9.315525 AGACAAACAAAAAGTTCTCTAGTACTC 57.684 33.333 0.00 0.00 40.26 2.59
438 463 8.434733 ACAAACAAAAAGTTCTCTAGTACTCC 57.565 34.615 0.00 0.00 40.26 3.85
439 464 7.498239 ACAAACAAAAAGTTCTCTAGTACTCCC 59.502 37.037 0.00 0.00 40.26 4.30
440 465 6.997942 ACAAAAAGTTCTCTAGTACTCCCT 57.002 37.500 0.00 0.00 0.00 4.20
441 466 6.995364 ACAAAAAGTTCTCTAGTACTCCCTC 58.005 40.000 0.00 0.00 0.00 4.30
442 467 6.783482 ACAAAAAGTTCTCTAGTACTCCCTCT 59.217 38.462 0.00 0.00 0.00 3.69
443 468 6.844097 AAAAGTTCTCTAGTACTCCCTCTG 57.156 41.667 0.00 0.00 0.00 3.35
444 469 5.523883 AAGTTCTCTAGTACTCCCTCTGT 57.476 43.478 0.00 0.00 0.00 3.41
445 470 6.639590 AAGTTCTCTAGTACTCCCTCTGTA 57.360 41.667 0.00 0.00 0.00 2.74
446 471 6.639590 AGTTCTCTAGTACTCCCTCTGTAA 57.360 41.667 0.00 0.00 0.00 2.41
447 472 7.030234 AGTTCTCTAGTACTCCCTCTGTAAA 57.970 40.000 0.00 0.00 0.00 2.01
448 473 7.645002 AGTTCTCTAGTACTCCCTCTGTAAAT 58.355 38.462 0.00 0.00 0.00 1.40
449 474 8.117312 AGTTCTCTAGTACTCCCTCTGTAAATT 58.883 37.037 0.00 0.00 0.00 1.82
450 475 9.406113 GTTCTCTAGTACTCCCTCTGTAAATTA 57.594 37.037 0.00 0.00 0.00 1.40
451 476 9.986157 TTCTCTAGTACTCCCTCTGTAAATTAA 57.014 33.333 0.00 0.00 0.00 1.40
454 479 9.710818 TCTAGTACTCCCTCTGTAAATTAATGT 57.289 33.333 0.00 0.00 0.00 2.71
460 485 7.988028 ACTCCCTCTGTAAATTAATGTAAGAGC 59.012 37.037 13.83 0.00 0.00 4.09
461 486 7.857456 TCCCTCTGTAAATTAATGTAAGAGCA 58.143 34.615 13.83 5.70 0.00 4.26
462 487 8.494433 TCCCTCTGTAAATTAATGTAAGAGCAT 58.506 33.333 13.83 0.00 0.00 3.79
463 488 9.125026 CCCTCTGTAAATTAATGTAAGAGCATT 57.875 33.333 13.83 0.00 41.42 3.56
471 496 9.807649 AAATTAATGTAAGAGCATTTGGATCAC 57.192 29.630 0.00 0.00 39.50 3.06
472 497 8.757982 ATTAATGTAAGAGCATTTGGATCACT 57.242 30.769 0.00 0.00 39.50 3.41
473 498 9.851686 ATTAATGTAAGAGCATTTGGATCACTA 57.148 29.630 0.00 0.00 39.50 2.74
474 499 9.679661 TTAATGTAAGAGCATTTGGATCACTAA 57.320 29.630 0.00 0.00 39.50 2.24
475 500 8.579850 AATGTAAGAGCATTTGGATCACTAAA 57.420 30.769 0.00 0.00 35.76 1.85
476 501 7.615582 TGTAAGAGCATTTGGATCACTAAAG 57.384 36.000 0.00 0.00 33.23 1.85
477 502 7.168219 TGTAAGAGCATTTGGATCACTAAAGT 58.832 34.615 0.00 0.00 33.23 2.66
478 503 8.318412 TGTAAGAGCATTTGGATCACTAAAGTA 58.682 33.333 0.00 0.00 33.23 2.24
479 504 7.856145 AAGAGCATTTGGATCACTAAAGTAG 57.144 36.000 0.00 0.00 33.23 2.57
480 505 6.951971 AGAGCATTTGGATCACTAAAGTAGT 58.048 36.000 0.00 0.00 40.28 2.73
501 526 8.948145 AGTAGTGATCTAAATGCTAGTATACGG 58.052 37.037 0.00 0.00 0.00 4.02
502 527 7.997773 AGTGATCTAAATGCTAGTATACGGA 57.002 36.000 0.00 0.00 0.00 4.69
503 528 7.818642 AGTGATCTAAATGCTAGTATACGGAC 58.181 38.462 0.00 0.00 0.00 4.79
504 529 7.666388 AGTGATCTAAATGCTAGTATACGGACT 59.334 37.037 0.00 0.00 0.00 3.85
505 530 8.944029 GTGATCTAAATGCTAGTATACGGACTA 58.056 37.037 0.00 0.00 0.00 2.59
506 531 8.944029 TGATCTAAATGCTAGTATACGGACTAC 58.056 37.037 0.00 0.00 0.00 2.73
516 541 3.510846 CGGACTACGGAGGGAGTG 58.489 66.667 0.00 0.00 39.42 3.51
517 542 2.119655 CGGACTACGGAGGGAGTGG 61.120 68.421 0.00 0.00 39.42 4.00
518 543 2.424733 GGACTACGGAGGGAGTGGC 61.425 68.421 0.00 0.00 0.00 5.01
523 548 4.181010 CGGAGGGAGTGGCATGGG 62.181 72.222 0.00 0.00 0.00 4.00
530 555 3.631487 GAGTGGCATGGGCGTTTGC 62.631 63.158 0.00 0.00 42.47 3.68
548 573 0.463620 GCTCACAAGCCCTAGAGAGG 59.536 60.000 0.00 0.00 43.10 3.69
555 580 2.517402 CCCTAGAGAGGCGCGTCT 60.517 66.667 30.96 30.96 42.21 4.18
562 587 2.762745 AGAGAGGCGCGTCTTTTTAAA 58.237 42.857 31.01 0.00 0.00 1.52
565 590 4.215613 AGAGAGGCGCGTCTTTTTAAATTT 59.784 37.500 31.01 7.44 0.00 1.82
566 591 4.866921 AGAGGCGCGTCTTTTTAAATTTT 58.133 34.783 25.97 0.43 0.00 1.82
567 592 4.915667 AGAGGCGCGTCTTTTTAAATTTTC 59.084 37.500 25.97 0.00 0.00 2.29
568 593 3.985279 AGGCGCGTCTTTTTAAATTTTCC 59.015 39.130 7.80 0.00 0.00 3.13
611 636 0.892755 ACCAACGAGCTCGGATAACA 59.107 50.000 36.93 0.00 44.95 2.41
624 649 3.554696 ATAACAACCGGCGGGCACA 62.555 57.895 31.78 11.45 36.48 4.57
680 705 0.981183 TGGCCAAGGATGACTACGTT 59.019 50.000 0.61 0.00 0.00 3.99
681 706 1.066430 TGGCCAAGGATGACTACGTTC 60.066 52.381 0.61 0.00 0.00 3.95
682 707 1.278238 GCCAAGGATGACTACGTTCG 58.722 55.000 0.00 0.00 0.00 3.95
683 708 1.278238 CCAAGGATGACTACGTTCGC 58.722 55.000 0.00 0.00 0.00 4.70
684 709 1.403647 CCAAGGATGACTACGTTCGCA 60.404 52.381 0.00 0.00 0.00 5.10
685 710 2.540515 CAAGGATGACTACGTTCGCAT 58.459 47.619 0.00 0.00 0.00 4.73
686 711 3.490249 CCAAGGATGACTACGTTCGCATA 60.490 47.826 0.00 0.00 0.00 3.14
823 853 2.436646 GACTGGTGGATGGGCACG 60.437 66.667 0.00 0.00 0.00 5.34
933 966 2.188161 CCTCCTCCTCCTACGTCGC 61.188 68.421 0.00 0.00 0.00 5.19
988 1040 2.432456 GCTCGATCGTGTGGTGCA 60.432 61.111 15.94 0.00 0.00 4.57
1214 1269 0.952497 AGGACTGCTACGACGTCGAA 60.952 55.000 41.52 22.51 43.02 3.71
1664 1728 0.037303 AGCCTGGACAAGACACCATG 59.963 55.000 0.00 0.00 35.54 3.66
1708 1780 8.261492 TCTCTTGTTCGTTTAGTACTACTAGG 57.739 38.462 0.91 0.23 31.47 3.02
1723 1795 7.986889 AGTACTACTAGGAGTAAGTTCTACTGC 59.013 40.741 16.70 0.51 33.74 4.40
1746 1818 4.074970 AGCTCAGGTGGTCAAATTACAAG 58.925 43.478 0.00 0.00 0.00 3.16
1780 1853 9.817809 ATACATGACCTTACTGTGTAAAGTATG 57.182 33.333 0.00 0.00 32.78 2.39
1781 1854 7.676947 ACATGACCTTACTGTGTAAAGTATGT 58.323 34.615 0.00 0.00 32.78 2.29
1782 1855 7.817962 ACATGACCTTACTGTGTAAAGTATGTC 59.182 37.037 0.00 0.00 36.40 3.06
1783 1856 6.384224 TGACCTTACTGTGTAAAGTATGTCG 58.616 40.000 0.00 0.00 37.47 4.35
1784 1857 5.717119 ACCTTACTGTGTAAAGTATGTCGG 58.283 41.667 0.00 0.00 32.78 4.79
1785 1858 5.244626 ACCTTACTGTGTAAAGTATGTCGGT 59.755 40.000 0.00 0.00 32.78 4.69
1786 1859 6.434028 ACCTTACTGTGTAAAGTATGTCGGTA 59.566 38.462 0.00 0.00 32.78 4.02
1787 1860 6.749118 CCTTACTGTGTAAAGTATGTCGGTAC 59.251 42.308 0.00 0.00 32.78 3.34
1788 1861 5.710513 ACTGTGTAAAGTATGTCGGTACA 57.289 39.130 0.00 0.00 40.69 2.90
1789 1862 5.706916 ACTGTGTAAAGTATGTCGGTACAG 58.293 41.667 0.00 0.00 39.49 2.74
1790 1863 5.474532 ACTGTGTAAAGTATGTCGGTACAGA 59.525 40.000 0.00 0.00 39.49 3.41
1791 1864 5.946298 TGTGTAAAGTATGTCGGTACAGAG 58.054 41.667 0.00 0.00 39.49 3.35
1792 1865 5.106038 TGTGTAAAGTATGTCGGTACAGAGG 60.106 44.000 0.00 0.00 39.49 3.69
1793 1866 5.124457 GTGTAAAGTATGTCGGTACAGAGGA 59.876 44.000 0.00 0.00 39.49 3.71
1794 1867 5.711506 TGTAAAGTATGTCGGTACAGAGGAA 59.288 40.000 0.00 0.00 39.49 3.36
1795 1868 5.733620 AAAGTATGTCGGTACAGAGGAAA 57.266 39.130 0.00 0.00 39.49 3.13
1796 1869 5.934402 AAGTATGTCGGTACAGAGGAAAT 57.066 39.130 0.00 0.00 39.49 2.17
1797 1870 7.414222 AAAGTATGTCGGTACAGAGGAAATA 57.586 36.000 0.00 0.00 39.49 1.40
1838 2011 4.519350 AGAATTGTGAGGCATATGCATGAG 59.481 41.667 28.07 2.36 44.36 2.90
1839 2012 1.601166 TGTGAGGCATATGCATGAGC 58.399 50.000 28.07 12.89 44.36 4.26
1853 2026 4.019919 GCATGAGCATGAATTGTAACGT 57.980 40.909 14.27 0.00 41.20 3.99
1854 2027 3.787634 GCATGAGCATGAATTGTAACGTG 59.212 43.478 14.27 0.00 41.20 4.49
1855 2028 3.469899 TGAGCATGAATTGTAACGTGC 57.530 42.857 0.00 0.00 45.69 5.34
1886 2059 7.430992 TCATCTAAAATACTCATGCTCATGC 57.569 36.000 5.04 0.00 38.65 4.06
1903 2076 7.766219 GCTCATGCAAAACTCATCAAAATAT 57.234 32.000 0.00 0.00 39.41 1.28
1904 2077 8.193250 GCTCATGCAAAACTCATCAAAATATT 57.807 30.769 0.00 0.00 39.41 1.28
1905 2078 8.662141 GCTCATGCAAAACTCATCAAAATATTT 58.338 29.630 0.00 0.00 39.41 1.40
2097 2272 7.902387 AAAGAATTTAGGAAAGTCCGAGTAC 57.098 36.000 0.00 0.00 42.75 2.73
2185 2363 5.306678 AGCCCAACCATAGAATCTTCTAGAG 59.693 44.000 5.92 2.71 42.55 2.43
2193 2371 7.442969 ACCATAGAATCTTCTAGAGAGTACACG 59.557 40.741 5.92 0.00 42.55 4.49
2230 2408 6.092807 GGTGAAGTAATGAGAAGATCCAACAC 59.907 42.308 0.00 0.00 0.00 3.32
2231 2409 6.650807 GTGAAGTAATGAGAAGATCCAACACA 59.349 38.462 0.00 0.00 0.00 3.72
2234 2412 5.934625 AGTAATGAGAAGATCCAACACACAC 59.065 40.000 0.00 0.00 0.00 3.82
2235 2413 3.836365 TGAGAAGATCCAACACACACA 57.164 42.857 0.00 0.00 0.00 3.72
2236 2414 3.466836 TGAGAAGATCCAACACACACAC 58.533 45.455 0.00 0.00 0.00 3.82
2240 2418 2.288666 AGATCCAACACACACACACAC 58.711 47.619 0.00 0.00 0.00 3.82
2241 2419 1.333619 GATCCAACACACACACACACC 59.666 52.381 0.00 0.00 0.00 4.16
2242 2420 0.036875 TCCAACACACACACACACCA 59.963 50.000 0.00 0.00 0.00 4.17
2244 2422 0.170116 CAACACACACACACACCACC 59.830 55.000 0.00 0.00 0.00 4.61
2246 2424 0.958382 ACACACACACACACCACCAC 60.958 55.000 0.00 0.00 0.00 4.16
2247 2425 1.377987 ACACACACACACCACCACC 60.378 57.895 0.00 0.00 0.00 4.61
2248 2426 1.377856 CACACACACACCACCACCA 60.378 57.895 0.00 0.00 0.00 4.17
2249 2427 1.377987 ACACACACACCACCACCAC 60.378 57.895 0.00 0.00 0.00 4.16
2251 2429 2.273776 CACACACCACCACCACCA 59.726 61.111 0.00 0.00 0.00 4.17
2252 2430 1.152777 CACACACCACCACCACCAT 60.153 57.895 0.00 0.00 0.00 3.55
2253 2431 0.109532 CACACACCACCACCACCATA 59.890 55.000 0.00 0.00 0.00 2.74
2254 2432 1.072266 ACACACCACCACCACCATAT 58.928 50.000 0.00 0.00 0.00 1.78
2255 2433 2.026729 CACACACCACCACCACCATATA 60.027 50.000 0.00 0.00 0.00 0.86
2256 2434 2.238646 ACACACCACCACCACCATATAG 59.761 50.000 0.00 0.00 0.00 1.31
2257 2435 2.238646 CACACCACCACCACCATATAGT 59.761 50.000 0.00 0.00 0.00 2.12
2258 2436 2.238646 ACACCACCACCACCATATAGTG 59.761 50.000 0.00 0.00 37.51 2.74
2259 2437 1.211949 ACCACCACCACCATATAGTGC 59.788 52.381 0.00 0.00 36.38 4.40
2261 2439 2.158623 CCACCACCACCATATAGTGCAT 60.159 50.000 0.00 0.00 36.38 3.96
2262 2440 2.880268 CACCACCACCATATAGTGCATG 59.120 50.000 0.00 0.00 36.38 4.06
2263 2441 2.777114 ACCACCACCATATAGTGCATGA 59.223 45.455 0.00 0.00 36.38 3.07
2264 2442 3.395607 ACCACCACCATATAGTGCATGAT 59.604 43.478 0.00 0.00 36.38 2.45
2265 2443 4.597075 ACCACCACCATATAGTGCATGATA 59.403 41.667 0.00 0.00 36.38 2.15
2266 2444 5.073008 ACCACCACCATATAGTGCATGATAA 59.927 40.000 0.00 0.00 36.38 1.75
2267 2445 5.412594 CCACCACCATATAGTGCATGATAAC 59.587 44.000 0.00 0.00 36.38 1.89
2268 2446 6.233434 CACCACCATATAGTGCATGATAACT 58.767 40.000 0.00 0.00 36.38 2.24
2270 2448 7.229306 CACCACCATATAGTGCATGATAACTTT 59.771 37.037 0.00 0.00 36.38 2.66
2272 2450 7.445096 CCACCATATAGTGCATGATAACTTTGA 59.555 37.037 0.00 0.00 36.38 2.69
2273 2451 8.839343 CACCATATAGTGCATGATAACTTTGAA 58.161 33.333 0.00 0.00 0.00 2.69
2284 2462 9.546909 GCATGATAACTTTGAATAATACGATGG 57.453 33.333 0.00 0.00 0.00 3.51
2287 2465 9.621629 TGATAACTTTGAATAATACGATGGGTT 57.378 29.630 0.00 0.00 0.00 4.11
2291 2469 7.927048 ACTTTGAATAATACGATGGGTTAAGC 58.073 34.615 0.00 0.00 0.00 3.09
2292 2470 6.870971 TTGAATAATACGATGGGTTAAGCC 57.129 37.500 17.01 17.01 0.00 4.35
2293 2471 4.992319 TGAATAATACGATGGGTTAAGCCG 59.008 41.667 18.46 9.42 38.44 5.52
2295 2473 3.764237 AATACGATGGGTTAAGCCGAT 57.236 42.857 18.46 12.67 38.47 4.18
2296 2474 2.806608 TACGATGGGTTAAGCCGATC 57.193 50.000 18.46 18.47 45.56 3.69
2297 2475 0.106149 ACGATGGGTTAAGCCGATCC 59.894 55.000 18.46 6.76 46.07 3.36
2298 2476 0.944311 CGATGGGTTAAGCCGATCCG 60.944 60.000 18.46 14.00 46.07 4.18
2299 2477 0.391597 GATGGGTTAAGCCGATCCGA 59.608 55.000 18.46 0.32 43.96 4.55
2300 2478 1.002087 GATGGGTTAAGCCGATCCGAT 59.998 52.381 18.46 5.49 43.96 4.18
2301 2479 0.105964 TGGGTTAAGCCGATCCGATG 59.894 55.000 18.46 0.00 38.44 3.84
2302 2480 0.602905 GGGTTAAGCCGATCCGATGG 60.603 60.000 8.16 0.00 38.44 3.51
2303 2481 0.106149 GGTTAAGCCGATCCGATGGT 59.894 55.000 0.00 0.00 0.00 3.55
2304 2482 1.342174 GGTTAAGCCGATCCGATGGTA 59.658 52.381 0.00 0.00 0.00 3.25
2305 2483 2.609737 GGTTAAGCCGATCCGATGGTAG 60.610 54.545 0.00 0.00 0.00 3.18
2306 2484 1.991121 TAAGCCGATCCGATGGTAGT 58.009 50.000 0.00 0.00 0.00 2.73
2307 2485 1.991121 AAGCCGATCCGATGGTAGTA 58.009 50.000 0.00 0.00 0.00 1.82
2310 2488 1.665161 GCCGATCCGATGGTAGTAACG 60.665 57.143 0.00 0.00 0.00 3.18
2311 2489 1.605710 CCGATCCGATGGTAGTAACGT 59.394 52.381 0.00 0.00 0.00 3.99
2312 2490 2.603892 CCGATCCGATGGTAGTAACGTG 60.604 54.545 0.00 0.00 0.00 4.49
2313 2491 2.603892 CGATCCGATGGTAGTAACGTGG 60.604 54.545 0.00 0.00 0.00 4.94
2314 2492 0.457035 TCCGATGGTAGTAACGTGGC 59.543 55.000 0.00 0.00 0.00 5.01
2315 2493 0.173935 CCGATGGTAGTAACGTGGCA 59.826 55.000 0.00 0.00 0.00 4.92
2317 2495 2.339418 CGATGGTAGTAACGTGGCAAA 58.661 47.619 0.00 0.00 0.00 3.68
2318 2496 2.933906 CGATGGTAGTAACGTGGCAAAT 59.066 45.455 0.00 0.00 0.00 2.32
2319 2497 3.000925 CGATGGTAGTAACGTGGCAAATC 59.999 47.826 0.00 0.00 0.00 2.17
2320 2498 2.702261 TGGTAGTAACGTGGCAAATCC 58.298 47.619 0.00 0.00 0.00 3.01
2331 2509 2.768698 TGGCAAATCCAATTGTTGCTG 58.231 42.857 23.52 10.08 45.50 4.41
2332 2510 2.367894 TGGCAAATCCAATTGTTGCTGA 59.632 40.909 23.52 13.01 45.50 4.26
2333 2511 2.738314 GGCAAATCCAATTGTTGCTGAC 59.262 45.455 23.52 10.14 45.50 3.51
2335 2513 3.430895 GCAAATCCAATTGTTGCTGACTG 59.569 43.478 19.55 6.61 43.40 3.51
2336 2514 4.624015 CAAATCCAATTGTTGCTGACTGT 58.376 39.130 4.43 0.00 0.00 3.55
2337 2515 4.942761 AATCCAATTGTTGCTGACTGTT 57.057 36.364 4.43 0.00 0.00 3.16
2354 2620 6.451393 TGACTGTTTAAATCCCCAAAAATCG 58.549 36.000 0.00 0.00 0.00 3.34
2357 2623 4.040461 TGTTTAAATCCCCAAAAATCGCCA 59.960 37.500 0.00 0.00 0.00 5.69
2360 2626 2.818751 ATCCCCAAAAATCGCCAGTA 57.181 45.000 0.00 0.00 0.00 2.74
2364 2630 2.495669 CCCCAAAAATCGCCAGTATTGT 59.504 45.455 0.00 0.00 0.00 2.71
2366 2632 3.510719 CCAAAAATCGCCAGTATTGTGG 58.489 45.455 0.00 0.00 41.01 4.17
2367 2633 3.056891 CCAAAAATCGCCAGTATTGTGGT 60.057 43.478 0.00 0.00 40.09 4.16
2392 2661 5.324697 GTTCCTAATCGATGCACAAAACTC 58.675 41.667 0.00 0.00 0.00 3.01
2412 2681 7.651027 AACTCCATCCTCCAAATATTTTGAG 57.349 36.000 18.16 18.16 31.70 3.02
2455 2724 5.349270 GCATTCAAATGAGCAAATTGCACTA 59.651 36.000 20.82 6.03 40.31 2.74
2487 2756 8.815189 TGAACACATGAACAACATTTAAACATG 58.185 29.630 0.00 9.80 37.07 3.21
2489 2758 6.705381 ACACATGAACAACATTTAAACATGGG 59.295 34.615 11.38 11.38 41.49 4.00
2498 2767 8.093927 ACAACATTTAAACATGGGGTTCATAAG 58.906 33.333 0.00 0.00 39.29 1.73
2520 2789 7.516198 AAGTAAACATGACTTTCAGCTTCAT 57.484 32.000 0.00 0.00 33.25 2.57
2522 2791 8.621532 AGTAAACATGACTTTCAGCTTCATAA 57.378 30.769 0.00 0.00 0.00 1.90
2650 2919 8.792830 ACTACCATATAATCCAAGGTTAGTCA 57.207 34.615 0.00 0.00 33.91 3.41
2680 2949 2.042435 AAGCCTCCTCCTCCTCCG 60.042 66.667 0.00 0.00 0.00 4.63
2681 2950 2.937285 AAGCCTCCTCCTCCTCCGT 61.937 63.158 0.00 0.00 0.00 4.69
2682 2951 2.364448 GCCTCCTCCTCCTCCGTT 60.364 66.667 0.00 0.00 0.00 4.44
2683 2952 2.726351 GCCTCCTCCTCCTCCGTTG 61.726 68.421 0.00 0.00 0.00 4.10
2684 2953 2.726351 CCTCCTCCTCCTCCGTTGC 61.726 68.421 0.00 0.00 0.00 4.17
2685 2954 2.683933 TCCTCCTCCTCCGTTGCC 60.684 66.667 0.00 0.00 0.00 4.52
2686 2955 3.003173 CCTCCTCCTCCGTTGCCA 61.003 66.667 0.00 0.00 0.00 4.92
2687 2956 2.266055 CTCCTCCTCCGTTGCCAC 59.734 66.667 0.00 0.00 0.00 5.01
2688 2957 3.316573 CTCCTCCTCCGTTGCCACC 62.317 68.421 0.00 0.00 0.00 4.61
2689 2958 3.322466 CCTCCTCCGTTGCCACCT 61.322 66.667 0.00 0.00 0.00 4.00
2690 2959 2.750350 CTCCTCCGTTGCCACCTT 59.250 61.111 0.00 0.00 0.00 3.50
2691 2960 1.550130 CCTCCTCCGTTGCCACCTTA 61.550 60.000 0.00 0.00 0.00 2.69
2692 2961 0.108138 CTCCTCCGTTGCCACCTTAG 60.108 60.000 0.00 0.00 0.00 2.18
2693 2962 0.834687 TCCTCCGTTGCCACCTTAGT 60.835 55.000 0.00 0.00 0.00 2.24
2694 2963 0.673644 CCTCCGTTGCCACCTTAGTG 60.674 60.000 0.00 0.00 44.12 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.746900 TGACGATGCTGTCATGGAG 57.253 52.632 0.00 0.00 43.62 3.86
7 8 1.148157 CGGTGGATGACGATGCTGTC 61.148 60.000 0.00 0.00 39.37 3.51
8 9 1.153568 CGGTGGATGACGATGCTGT 60.154 57.895 0.00 0.00 0.00 4.40
10 11 2.202932 GCGGTGGATGACGATGCT 60.203 61.111 0.00 0.00 0.00 3.79
11 12 3.272334 GGCGGTGGATGACGATGC 61.272 66.667 0.00 0.00 0.00 3.91
12 13 2.961721 CGGCGGTGGATGACGATG 60.962 66.667 0.00 0.00 0.00 3.84
13 14 3.014085 AACGGCGGTGGATGACGAT 62.014 57.895 13.24 0.00 0.00 3.73
14 15 3.687102 AACGGCGGTGGATGACGA 61.687 61.111 13.24 0.00 0.00 4.20
15 16 3.487202 CAACGGCGGTGGATGACG 61.487 66.667 19.01 0.00 0.00 4.35
16 17 1.964373 AACAACGGCGGTGGATGAC 60.964 57.895 30.22 0.00 0.00 3.06
17 18 1.963855 CAACAACGGCGGTGGATGA 60.964 57.895 30.22 0.00 0.00 2.92
18 19 1.963855 TCAACAACGGCGGTGGATG 60.964 57.895 30.22 25.56 0.00 3.51
19 20 1.964373 GTCAACAACGGCGGTGGAT 60.964 57.895 30.22 15.04 0.00 3.41
20 21 2.589442 GTCAACAACGGCGGTGGA 60.589 61.111 30.22 15.04 0.00 4.02
25 26 2.053465 CACGTGTCAACAACGGCG 60.053 61.111 7.58 4.80 35.74 6.46
31 32 2.623535 GGTATATGCCACGTGTCAACA 58.376 47.619 15.65 7.51 0.00 3.33
32 33 1.937899 GGGTATATGCCACGTGTCAAC 59.062 52.381 15.65 2.89 0.00 3.18
39 40 1.614903 TCGGTAAGGGTATATGCCACG 59.385 52.381 12.29 7.75 0.00 4.94
43 44 4.615452 CGAGTTCTCGGTAAGGGTATATGC 60.615 50.000 13.52 0.00 0.00 3.14
58 59 2.342910 TCGGCTTACAACGAGTTCTC 57.657 50.000 0.00 0.00 34.67 2.87
65 66 1.215647 AGGCTCTCGGCTTACAACG 59.784 57.895 0.00 0.00 44.74 4.10
99 100 3.208594 ACTCGGTTTAAAAAGGACGCTT 58.791 40.909 0.00 0.00 0.00 4.68
102 103 5.851047 ATGTACTCGGTTTAAAAAGGACG 57.149 39.130 0.00 0.00 0.00 4.79
104 105 7.998580 ACAAAATGTACTCGGTTTAAAAAGGA 58.001 30.769 0.00 0.00 0.00 3.36
110 111 7.227116 AGTGCTTACAAAATGTACTCGGTTTAA 59.773 33.333 0.00 0.00 31.69 1.52
144 145 8.190784 GCTTACCGAGTTACAGTACCTTATAAA 58.809 37.037 0.00 0.00 0.00 1.40
145 146 7.201821 GGCTTACCGAGTTACAGTACCTTATAA 60.202 40.741 0.00 0.00 0.00 0.98
146 147 6.263168 GGCTTACCGAGTTACAGTACCTTATA 59.737 42.308 0.00 0.00 0.00 0.98
148 149 4.399303 GGCTTACCGAGTTACAGTACCTTA 59.601 45.833 0.00 0.00 0.00 2.69
149 150 3.194329 GGCTTACCGAGTTACAGTACCTT 59.806 47.826 0.00 0.00 0.00 3.50
151 152 2.493278 TGGCTTACCGAGTTACAGTACC 59.507 50.000 0.00 0.00 39.70 3.34
152 153 3.855689 TGGCTTACCGAGTTACAGTAC 57.144 47.619 0.00 0.00 39.70 2.73
153 154 3.194116 CCTTGGCTTACCGAGTTACAGTA 59.806 47.826 0.00 0.00 45.17 2.74
154 155 2.028385 CCTTGGCTTACCGAGTTACAGT 60.028 50.000 0.00 0.00 45.17 3.55
155 156 2.618053 CCTTGGCTTACCGAGTTACAG 58.382 52.381 0.00 0.00 45.17 2.74
156 157 1.338389 GCCTTGGCTTACCGAGTTACA 60.338 52.381 4.11 0.00 45.17 2.41
157 158 1.066358 AGCCTTGGCTTACCGAGTTAC 60.066 52.381 8.56 0.00 45.17 2.50
158 159 1.272807 AGCCTTGGCTTACCGAGTTA 58.727 50.000 8.56 0.00 45.17 2.24
159 160 0.400594 AAGCCTTGGCTTACCGAGTT 59.599 50.000 23.66 0.00 45.17 3.01
160 161 0.036294 GAAGCCTTGGCTTACCGAGT 60.036 55.000 24.74 3.18 45.17 4.18
161 162 0.744771 GGAAGCCTTGGCTTACCGAG 60.745 60.000 24.74 0.00 46.10 4.63
162 163 1.298667 GGAAGCCTTGGCTTACCGA 59.701 57.895 24.74 0.00 39.70 4.69
163 164 0.394352 ATGGAAGCCTTGGCTTACCG 60.394 55.000 27.98 0.00 39.70 4.02
164 165 1.852633 AATGGAAGCCTTGGCTTACC 58.147 50.000 27.98 25.44 29.97 2.85
172 173 2.154462 CACGACAGAAATGGAAGCCTT 58.846 47.619 0.00 0.00 0.00 4.35
177 178 4.196193 AGAAACACACGACAGAAATGGAA 58.804 39.130 0.00 0.00 0.00 3.53
183 184 3.369756 GTGACAAGAAACACACGACAGAA 59.630 43.478 0.00 0.00 37.05 3.02
185 186 3.304382 GTGACAAGAAACACACGACAG 57.696 47.619 0.00 0.00 37.05 3.51
197 198 0.892358 AGCCGAGTACCGTGACAAGA 60.892 55.000 0.00 0.00 36.31 3.02
198 199 0.806868 TAGCCGAGTACCGTGACAAG 59.193 55.000 0.00 0.00 36.31 3.16
201 202 1.722636 CCCTAGCCGAGTACCGTGAC 61.723 65.000 0.00 0.00 36.31 3.67
203 204 0.822532 ATCCCTAGCCGAGTACCGTG 60.823 60.000 0.00 0.00 36.31 4.94
204 205 0.822532 CATCCCTAGCCGAGTACCGT 60.823 60.000 0.00 0.00 36.31 4.83
205 206 0.822532 ACATCCCTAGCCGAGTACCG 60.823 60.000 0.00 0.00 38.18 4.02
207 208 3.220940 ACTTACATCCCTAGCCGAGTAC 58.779 50.000 0.00 0.00 0.00 2.73
208 209 3.484407 GACTTACATCCCTAGCCGAGTA 58.516 50.000 0.00 0.00 0.00 2.59
209 210 2.308690 GACTTACATCCCTAGCCGAGT 58.691 52.381 0.00 0.00 0.00 4.18
211 212 1.134007 TCGACTTACATCCCTAGCCGA 60.134 52.381 0.00 0.00 0.00 5.54
212 213 1.267261 CTCGACTTACATCCCTAGCCG 59.733 57.143 0.00 0.00 0.00 5.52
213 214 2.308690 ACTCGACTTACATCCCTAGCC 58.691 52.381 0.00 0.00 0.00 3.93
214 215 4.098196 AGAAACTCGACTTACATCCCTAGC 59.902 45.833 0.00 0.00 0.00 3.42
215 216 5.357314 TCAGAAACTCGACTTACATCCCTAG 59.643 44.000 0.00 0.00 0.00 3.02
216 217 5.258841 TCAGAAACTCGACTTACATCCCTA 58.741 41.667 0.00 0.00 0.00 3.53
217 218 4.087182 TCAGAAACTCGACTTACATCCCT 58.913 43.478 0.00 0.00 0.00 4.20
218 219 4.451629 TCAGAAACTCGACTTACATCCC 57.548 45.455 0.00 0.00 0.00 3.85
219 220 6.969828 ATTTCAGAAACTCGACTTACATCC 57.030 37.500 0.00 0.00 0.00 3.51
220 221 9.907576 CAATATTTCAGAAACTCGACTTACATC 57.092 33.333 0.00 0.00 0.00 3.06
221 222 8.391106 GCAATATTTCAGAAACTCGACTTACAT 58.609 33.333 0.00 0.00 0.00 2.29
222 223 7.386573 TGCAATATTTCAGAAACTCGACTTACA 59.613 33.333 0.00 0.00 0.00 2.41
223 224 7.688578 GTGCAATATTTCAGAAACTCGACTTAC 59.311 37.037 0.00 0.00 0.00 2.34
224 225 7.602644 AGTGCAATATTTCAGAAACTCGACTTA 59.397 33.333 0.00 0.00 0.00 2.24
225 226 6.428159 AGTGCAATATTTCAGAAACTCGACTT 59.572 34.615 0.00 0.00 0.00 3.01
226 227 5.934625 AGTGCAATATTTCAGAAACTCGACT 59.065 36.000 0.00 0.00 0.00 4.18
227 228 6.170675 AGTGCAATATTTCAGAAACTCGAC 57.829 37.500 0.00 0.00 0.00 4.20
228 229 6.408858 GAGTGCAATATTTCAGAAACTCGA 57.591 37.500 0.00 0.00 0.00 4.04
229 230 5.251081 CGAGTGCAATATTTCAGAAACTCG 58.749 41.667 13.96 13.96 46.41 4.18
230 231 5.122396 ACCGAGTGCAATATTTCAGAAACTC 59.878 40.000 0.00 0.00 0.00 3.01
231 232 5.003804 ACCGAGTGCAATATTTCAGAAACT 58.996 37.500 0.00 0.00 0.00 2.66
232 233 5.296813 ACCGAGTGCAATATTTCAGAAAC 57.703 39.130 0.00 0.00 0.00 2.78
233 234 5.471797 TGAACCGAGTGCAATATTTCAGAAA 59.528 36.000 0.00 0.00 0.00 2.52
234 235 5.000591 TGAACCGAGTGCAATATTTCAGAA 58.999 37.500 0.00 0.00 0.00 3.02
235 236 4.391830 GTGAACCGAGTGCAATATTTCAGA 59.608 41.667 5.16 0.00 0.00 3.27
236 237 4.154015 TGTGAACCGAGTGCAATATTTCAG 59.846 41.667 5.16 0.00 0.00 3.02
237 238 4.068599 TGTGAACCGAGTGCAATATTTCA 58.931 39.130 0.00 0.00 0.00 2.69
256 257 1.451337 TTTCCGTGCACCCATGTGTG 61.451 55.000 12.15 3.68 44.65 3.82
273 274 5.120399 TCACTACAGGAAAATCACGTGTTT 58.880 37.500 16.51 10.99 37.50 2.83
276 277 5.862924 ATTCACTACAGGAAAATCACGTG 57.137 39.130 9.94 9.94 0.00 4.49
277 278 6.698380 AGTATTCACTACAGGAAAATCACGT 58.302 36.000 0.00 0.00 31.45 4.49
278 279 7.456253 CAAGTATTCACTACAGGAAAATCACG 58.544 38.462 0.00 0.00 33.48 4.35
279 280 7.094805 TGCAAGTATTCACTACAGGAAAATCAC 60.095 37.037 0.00 0.00 33.48 3.06
288 290 8.453320 TCAATCATTTGCAAGTATTCACTACAG 58.547 33.333 0.00 0.00 31.54 2.74
321 323 5.605069 ACCAAGGGTATACTATGTGCATGTA 59.395 40.000 2.25 0.00 32.11 2.29
322 324 4.412199 ACCAAGGGTATACTATGTGCATGT 59.588 41.667 2.25 0.00 32.11 3.21
323 325 4.756642 CACCAAGGGTATACTATGTGCATG 59.243 45.833 2.25 0.00 32.11 4.06
324 326 4.746702 GCACCAAGGGTATACTATGTGCAT 60.747 45.833 20.74 0.00 42.70 3.96
325 327 3.433031 GCACCAAGGGTATACTATGTGCA 60.433 47.826 20.74 0.00 42.70 4.57
326 328 3.139077 GCACCAAGGGTATACTATGTGC 58.861 50.000 15.29 15.29 39.37 4.57
328 330 4.473559 ACAAGCACCAAGGGTATACTATGT 59.526 41.667 2.25 0.00 32.11 2.29
329 331 5.036117 ACAAGCACCAAGGGTATACTATG 57.964 43.478 2.25 0.03 32.11 2.23
331 333 4.161565 CAGACAAGCACCAAGGGTATACTA 59.838 45.833 2.25 0.00 32.11 1.82
352 371 4.655027 TCGTAGTACTATGTTTCACGCAG 58.345 43.478 19.29 0.00 0.00 5.18
366 385 5.289193 TGATTACGCAAAACCATCGTAGTAC 59.711 40.000 0.00 0.00 39.42 2.73
372 391 2.418628 AGGTGATTACGCAAAACCATCG 59.581 45.455 6.43 0.00 33.13 3.84
414 436 7.715686 AGGGAGTACTAGAGAACTTTTTGTTTG 59.284 37.037 0.00 0.00 39.30 2.93
416 438 7.290481 AGAGGGAGTACTAGAGAACTTTTTGTT 59.710 37.037 0.00 0.00 42.38 2.83
418 440 7.093992 CAGAGGGAGTACTAGAGAACTTTTTG 58.906 42.308 0.00 0.00 0.00 2.44
437 462 8.682936 ATGCTCTTACATTAATTTACAGAGGG 57.317 34.615 15.20 1.28 0.00 4.30
445 470 9.807649 GTGATCCAAATGCTCTTACATTAATTT 57.192 29.630 0.00 0.00 39.32 1.82
446 471 9.193806 AGTGATCCAAATGCTCTTACATTAATT 57.806 29.630 0.00 0.00 39.32 1.40
447 472 8.757982 AGTGATCCAAATGCTCTTACATTAAT 57.242 30.769 0.00 0.00 39.32 1.40
448 473 9.679661 TTAGTGATCCAAATGCTCTTACATTAA 57.320 29.630 0.00 0.00 39.32 1.40
449 474 9.679661 TTTAGTGATCCAAATGCTCTTACATTA 57.320 29.630 0.00 0.00 39.32 1.90
450 475 8.579850 TTTAGTGATCCAAATGCTCTTACATT 57.420 30.769 0.00 0.00 42.01 2.71
451 476 7.831193 ACTTTAGTGATCCAAATGCTCTTACAT 59.169 33.333 0.00 0.00 0.00 2.29
452 477 7.168219 ACTTTAGTGATCCAAATGCTCTTACA 58.832 34.615 0.00 0.00 0.00 2.41
453 478 7.617041 ACTTTAGTGATCCAAATGCTCTTAC 57.383 36.000 0.00 0.00 0.00 2.34
454 479 8.540388 ACTACTTTAGTGATCCAAATGCTCTTA 58.460 33.333 0.00 0.00 37.69 2.10
455 480 7.398024 ACTACTTTAGTGATCCAAATGCTCTT 58.602 34.615 0.00 0.00 37.69 2.85
456 481 6.951971 ACTACTTTAGTGATCCAAATGCTCT 58.048 36.000 0.00 0.00 37.69 4.09
475 500 8.948145 CCGTATACTAGCATTTAGATCACTACT 58.052 37.037 0.56 0.00 0.00 2.57
476 501 8.944029 TCCGTATACTAGCATTTAGATCACTAC 58.056 37.037 0.56 0.00 0.00 2.73
477 502 8.944029 GTCCGTATACTAGCATTTAGATCACTA 58.056 37.037 0.56 0.00 0.00 2.74
478 503 7.666388 AGTCCGTATACTAGCATTTAGATCACT 59.334 37.037 0.56 0.00 0.00 3.41
479 504 7.818642 AGTCCGTATACTAGCATTTAGATCAC 58.181 38.462 0.56 0.00 0.00 3.06
480 505 7.997773 AGTCCGTATACTAGCATTTAGATCA 57.002 36.000 0.56 0.00 0.00 2.92
481 506 8.115520 CGTAGTCCGTATACTAGCATTTAGATC 58.884 40.741 0.56 0.00 32.69 2.75
482 507 7.065563 CCGTAGTCCGTATACTAGCATTTAGAT 59.934 40.741 0.56 0.00 32.69 1.98
483 508 6.369890 CCGTAGTCCGTATACTAGCATTTAGA 59.630 42.308 0.56 0.00 32.69 2.10
484 509 6.369890 TCCGTAGTCCGTATACTAGCATTTAG 59.630 42.308 0.56 0.00 32.69 1.85
485 510 6.230472 TCCGTAGTCCGTATACTAGCATTTA 58.770 40.000 0.56 0.00 32.69 1.40
486 511 5.065914 TCCGTAGTCCGTATACTAGCATTT 58.934 41.667 0.56 0.00 32.69 2.32
487 512 4.645535 TCCGTAGTCCGTATACTAGCATT 58.354 43.478 0.56 0.00 32.69 3.56
488 513 4.252073 CTCCGTAGTCCGTATACTAGCAT 58.748 47.826 0.56 0.00 32.69 3.79
489 514 3.555795 CCTCCGTAGTCCGTATACTAGCA 60.556 52.174 0.56 0.00 32.69 3.49
490 515 2.999355 CCTCCGTAGTCCGTATACTAGC 59.001 54.545 0.56 0.00 32.69 3.42
491 516 3.259374 TCCCTCCGTAGTCCGTATACTAG 59.741 52.174 0.56 0.00 32.69 2.57
492 517 3.239449 TCCCTCCGTAGTCCGTATACTA 58.761 50.000 0.56 0.00 33.66 1.82
493 518 2.038295 CTCCCTCCGTAGTCCGTATACT 59.962 54.545 0.56 0.00 33.66 2.12
494 519 2.224402 ACTCCCTCCGTAGTCCGTATAC 60.224 54.545 0.00 0.00 33.66 1.47
495 520 2.050144 ACTCCCTCCGTAGTCCGTATA 58.950 52.381 0.00 0.00 33.66 1.47
496 521 0.842635 ACTCCCTCCGTAGTCCGTAT 59.157 55.000 0.00 0.00 33.66 3.06
497 522 0.107508 CACTCCCTCCGTAGTCCGTA 60.108 60.000 0.00 0.00 33.66 4.02
498 523 1.378250 CACTCCCTCCGTAGTCCGT 60.378 63.158 0.00 0.00 33.66 4.69
499 524 2.119655 CCACTCCCTCCGTAGTCCG 61.120 68.421 0.00 0.00 0.00 4.79
500 525 2.424733 GCCACTCCCTCCGTAGTCC 61.425 68.421 0.00 0.00 0.00 3.85
501 526 1.043673 ATGCCACTCCCTCCGTAGTC 61.044 60.000 0.00 0.00 0.00 2.59
502 527 1.001760 ATGCCACTCCCTCCGTAGT 59.998 57.895 0.00 0.00 0.00 2.73
503 528 1.443407 CATGCCACTCCCTCCGTAG 59.557 63.158 0.00 0.00 0.00 3.51
504 529 2.063979 CCATGCCACTCCCTCCGTA 61.064 63.158 0.00 0.00 0.00 4.02
505 530 3.402681 CCATGCCACTCCCTCCGT 61.403 66.667 0.00 0.00 0.00 4.69
506 531 4.181010 CCCATGCCACTCCCTCCG 62.181 72.222 0.00 0.00 0.00 4.63
507 532 4.512914 GCCCATGCCACTCCCTCC 62.513 72.222 0.00 0.00 0.00 4.30
508 533 4.864334 CGCCCATGCCACTCCCTC 62.864 72.222 0.00 0.00 0.00 4.30
510 535 4.740822 AACGCCCATGCCACTCCC 62.741 66.667 0.00 0.00 0.00 4.30
511 536 2.676471 AAACGCCCATGCCACTCC 60.676 61.111 0.00 0.00 0.00 3.85
512 537 2.568090 CAAACGCCCATGCCACTC 59.432 61.111 0.00 0.00 0.00 3.51
513 538 3.683937 GCAAACGCCCATGCCACT 61.684 61.111 0.00 0.00 36.56 4.00
514 539 3.631487 GAGCAAACGCCCATGCCAC 62.631 63.158 0.00 0.00 43.57 5.01
515 540 3.372730 GAGCAAACGCCCATGCCA 61.373 61.111 0.00 0.00 43.57 4.92
516 541 3.372730 TGAGCAAACGCCCATGCC 61.373 61.111 0.00 0.00 43.57 4.40
517 542 2.126346 GTGAGCAAACGCCCATGC 60.126 61.111 0.00 0.00 42.87 4.06
518 543 0.387622 CTTGTGAGCAAACGCCCATG 60.388 55.000 0.00 0.00 33.73 3.66
530 555 0.463620 GCCTCTCTAGGGCTTGTGAG 59.536 60.000 1.54 0.00 45.57 3.51
533 558 2.726351 GCGCCTCTCTAGGGCTTGT 61.726 63.158 0.00 0.00 46.73 3.16
536 561 4.824515 ACGCGCCTCTCTAGGGCT 62.825 66.667 5.73 0.00 46.73 5.19
538 563 1.668101 AAAGACGCGCCTCTCTAGGG 61.668 60.000 5.73 0.00 43.87 3.53
548 573 5.388061 GGAAGGAAAATTTAAAAAGACGCGC 60.388 40.000 5.73 0.00 0.00 6.86
555 580 8.132995 GTCGACAGAGGAAGGAAAATTTAAAAA 58.867 33.333 11.55 0.00 0.00 1.94
562 587 5.017490 TCTAGTCGACAGAGGAAGGAAAAT 58.983 41.667 19.50 0.00 0.00 1.82
565 590 3.263681 TCTCTAGTCGACAGAGGAAGGAA 59.736 47.826 28.78 15.67 40.04 3.36
566 591 2.838813 TCTCTAGTCGACAGAGGAAGGA 59.161 50.000 28.78 16.29 40.04 3.36
567 592 3.202906 CTCTCTAGTCGACAGAGGAAGG 58.797 54.545 28.78 18.90 40.04 3.46
568 593 2.612212 GCTCTCTAGTCGACAGAGGAAG 59.388 54.545 28.78 23.54 40.04 3.46
611 636 2.360767 TACTATGTGCCCGCCGGTT 61.361 57.895 1.90 0.00 0.00 4.44
624 649 4.061596 GCTCGAACTACCTACCGTACTAT 58.938 47.826 0.00 0.00 0.00 2.12
682 707 0.884704 ATCGGTGGGATGCGTTATGC 60.885 55.000 0.00 0.00 46.70 3.14
683 708 0.867746 CATCGGTGGGATGCGTTATG 59.132 55.000 0.00 0.00 45.57 1.90
684 709 3.305709 CATCGGTGGGATGCGTTAT 57.694 52.632 0.00 0.00 45.57 1.89
685 710 4.846551 CATCGGTGGGATGCGTTA 57.153 55.556 0.00 0.00 45.57 3.18
802 832 1.678970 GCCCATCCACCAGTCCAAC 60.679 63.158 0.00 0.00 0.00 3.77
823 853 0.601841 TTTTCCGCTCCTCCACGTTC 60.602 55.000 0.00 0.00 0.00 3.95
859 889 3.485711 CGGGCGCGTATTTATAGACGATA 60.486 47.826 15.94 0.00 41.30 2.92
933 966 0.682852 TCCACACGTACCAAGGGAAG 59.317 55.000 0.00 0.00 0.00 3.46
1183 1238 2.111384 AGCAGTCCTGGATATGACGTT 58.889 47.619 14.09 0.00 36.61 3.99
1191 1246 0.680280 ACGTCGTAGCAGTCCTGGAT 60.680 55.000 0.00 0.00 0.00 3.41
1270 1325 3.332493 TTCTGACCGGTAGCGTCGC 62.332 63.158 7.34 9.80 32.68 5.19
1277 1332 4.124351 CGCGCCTTCTGACCGGTA 62.124 66.667 7.34 0.00 0.00 4.02
1629 1693 2.029844 GCTCACGGTCAAGCAGTCC 61.030 63.158 7.07 0.00 38.42 3.85
1632 1696 2.031516 CAGGCTCACGGTCAAGCAG 61.032 63.158 12.56 3.02 40.36 4.24
1637 1701 2.099652 CTTGTCCAGGCTCACGGTCA 62.100 60.000 0.00 0.00 0.00 4.02
1640 1704 1.374758 GTCTTGTCCAGGCTCACGG 60.375 63.158 0.00 0.00 0.00 4.94
1664 1728 2.062519 GAAGCTCGTGTCTTGGAGAAC 58.937 52.381 0.00 0.00 31.90 3.01
1708 1780 4.420168 CTGAGCTGCAGTAGAACTTACTC 58.580 47.826 16.64 10.11 39.85 2.59
1723 1795 3.411446 TGTAATTTGACCACCTGAGCTG 58.589 45.455 0.00 0.00 0.00 4.24
1731 1803 9.503427 GTATATCTTTGCTTGTAATTTGACCAC 57.497 33.333 0.00 0.00 0.00 4.16
1746 1818 7.495934 ACACAGTAAGGTCATGTATATCTTTGC 59.504 37.037 0.00 0.00 0.00 3.68
1763 1836 7.307694 TGTACCGACATACTTTACACAGTAAG 58.692 38.462 0.00 0.00 32.90 2.34
1774 1847 5.934402 ATTTCCTCTGTACCGACATACTT 57.066 39.130 0.00 0.00 34.24 2.24
1775 1848 7.598759 AATATTTCCTCTGTACCGACATACT 57.401 36.000 0.00 0.00 34.24 2.12
1776 1849 9.754382 TTTAATATTTCCTCTGTACCGACATAC 57.246 33.333 0.00 0.00 34.24 2.39
1810 1883 5.474532 TGCATATGCCTCACAATTCTATTCC 59.525 40.000 24.54 0.00 41.18 3.01
1838 2011 4.963237 TTTTGCACGTTACAATTCATGC 57.037 36.364 1.84 0.00 0.00 4.06
1879 2052 7.766219 ATATTTTGATGAGTTTTGCATGAGC 57.234 32.000 0.00 0.00 42.57 4.26
1916 2089 9.407380 ACTCAATATATGCCTCACAATTACAAA 57.593 29.630 0.00 0.00 0.00 2.83
1917 2090 8.978874 ACTCAATATATGCCTCACAATTACAA 57.021 30.769 0.00 0.00 0.00 2.41
1918 2091 8.839343 CAACTCAATATATGCCTCACAATTACA 58.161 33.333 0.00 0.00 0.00 2.41
1919 2092 9.056005 TCAACTCAATATATGCCTCACAATTAC 57.944 33.333 0.00 0.00 0.00 1.89
1920 2093 9.276590 CTCAACTCAATATATGCCTCACAATTA 57.723 33.333 0.00 0.00 0.00 1.40
1921 2094 7.255381 GCTCAACTCAATATATGCCTCACAATT 60.255 37.037 0.00 0.00 0.00 2.32
1922 2095 6.206243 GCTCAACTCAATATATGCCTCACAAT 59.794 38.462 0.00 0.00 0.00 2.71
1923 2096 5.528690 GCTCAACTCAATATATGCCTCACAA 59.471 40.000 0.00 0.00 0.00 3.33
1924 2097 5.059161 GCTCAACTCAATATATGCCTCACA 58.941 41.667 0.00 0.00 0.00 3.58
1925 2098 4.151335 CGCTCAACTCAATATATGCCTCAC 59.849 45.833 0.00 0.00 0.00 3.51
1926 2099 4.202253 ACGCTCAACTCAATATATGCCTCA 60.202 41.667 0.00 0.00 0.00 3.86
1927 2100 4.310769 ACGCTCAACTCAATATATGCCTC 58.689 43.478 0.00 0.00 0.00 4.70
1928 2101 4.342862 ACGCTCAACTCAATATATGCCT 57.657 40.909 0.00 0.00 0.00 4.75
1929 2102 6.727824 AATACGCTCAACTCAATATATGCC 57.272 37.500 0.00 0.00 0.00 4.40
1930 2103 7.535258 CCAAAATACGCTCAACTCAATATATGC 59.465 37.037 0.00 0.00 0.00 3.14
1931 2104 7.535258 GCCAAAATACGCTCAACTCAATATATG 59.465 37.037 0.00 0.00 0.00 1.78
1986 2159 6.841443 TTTAACTTTGTGGATTGCACATTG 57.159 33.333 12.00 10.01 32.12 2.82
2021 2195 8.959705 ACTTTGTATTTAAGGCTATGTACCTC 57.040 34.615 0.00 0.00 36.14 3.85
2097 2272 9.715121 ACTTCTACTATATTCTAGACTCTTCCG 57.285 37.037 0.00 0.00 0.00 4.30
2164 2339 7.595819 ACTCTCTAGAAGATTCTATGGTTGG 57.404 40.000 2.88 0.00 38.95 3.77
2185 2363 2.263077 CAGATTCTGCCACGTGTACTC 58.737 52.381 15.65 2.56 0.00 2.59
2193 2371 2.191128 ACTTCACCAGATTCTGCCAC 57.809 50.000 8.23 0.00 0.00 5.01
2230 2408 1.377856 TGGTGGTGGTGTGTGTGTG 60.378 57.895 0.00 0.00 0.00 3.82
2231 2409 1.377987 GTGGTGGTGGTGTGTGTGT 60.378 57.895 0.00 0.00 0.00 3.72
2234 2412 0.109532 TATGGTGGTGGTGGTGTGTG 59.890 55.000 0.00 0.00 0.00 3.82
2235 2413 1.072266 ATATGGTGGTGGTGGTGTGT 58.928 50.000 0.00 0.00 0.00 3.72
2236 2414 2.238646 ACTATATGGTGGTGGTGGTGTG 59.761 50.000 0.00 0.00 0.00 3.82
2240 2418 1.211703 TGCACTATATGGTGGTGGTGG 59.788 52.381 19.49 0.00 39.50 4.61
2241 2419 2.708216 TGCACTATATGGTGGTGGTG 57.292 50.000 19.49 0.00 39.50 4.17
2242 2420 2.777114 TCATGCACTATATGGTGGTGGT 59.223 45.455 19.49 0.00 39.50 4.16
2244 2422 6.233434 AGTTATCATGCACTATATGGTGGTG 58.767 40.000 19.49 8.10 41.81 4.17
2246 2424 7.445096 TCAAAGTTATCATGCACTATATGGTGG 59.555 37.037 19.49 4.72 37.65 4.61
2247 2425 8.382030 TCAAAGTTATCATGCACTATATGGTG 57.618 34.615 14.47 14.47 39.91 4.17
2248 2426 8.978874 TTCAAAGTTATCATGCACTATATGGT 57.021 30.769 0.00 0.00 0.00 3.55
2255 2433 9.325198 TCGTATTATTCAAAGTTATCATGCACT 57.675 29.630 0.00 0.00 0.00 4.40
2258 2436 9.546909 CCATCGTATTATTCAAAGTTATCATGC 57.453 33.333 0.00 0.00 0.00 4.06
2261 2439 9.621629 AACCCATCGTATTATTCAAAGTTATCA 57.378 29.630 0.00 0.00 0.00 2.15
2265 2443 8.403236 GCTTAACCCATCGTATTATTCAAAGTT 58.597 33.333 0.00 0.00 0.00 2.66
2266 2444 7.012989 GGCTTAACCCATCGTATTATTCAAAGT 59.987 37.037 0.00 0.00 0.00 2.66
2267 2445 7.360361 GGCTTAACCCATCGTATTATTCAAAG 58.640 38.462 0.00 0.00 0.00 2.77
2268 2446 6.017770 CGGCTTAACCCATCGTATTATTCAAA 60.018 38.462 0.00 0.00 33.26 2.69
2270 2448 4.992319 CGGCTTAACCCATCGTATTATTCA 59.008 41.667 0.00 0.00 33.26 2.57
2272 2450 5.217978 TCGGCTTAACCCATCGTATTATT 57.782 39.130 0.00 0.00 33.26 1.40
2273 2451 4.877378 TCGGCTTAACCCATCGTATTAT 57.123 40.909 0.00 0.00 33.26 1.28
2275 2453 3.556423 GGATCGGCTTAACCCATCGTATT 60.556 47.826 0.00 0.00 33.26 1.89
2277 2455 1.342174 GGATCGGCTTAACCCATCGTA 59.658 52.381 0.00 0.00 33.26 3.43
2278 2456 0.106149 GGATCGGCTTAACCCATCGT 59.894 55.000 0.00 0.00 33.26 3.73
2280 2458 0.391597 TCGGATCGGCTTAACCCATC 59.608 55.000 0.00 0.00 33.26 3.51
2282 2460 0.105964 CATCGGATCGGCTTAACCCA 59.894 55.000 0.00 0.00 33.26 4.51
2283 2461 0.602905 CCATCGGATCGGCTTAACCC 60.603 60.000 0.00 0.00 33.26 4.11
2284 2462 0.106149 ACCATCGGATCGGCTTAACC 59.894 55.000 6.43 0.00 0.00 2.85
2285 2463 2.035576 ACTACCATCGGATCGGCTTAAC 59.964 50.000 6.43 0.00 0.00 2.01
2287 2465 1.991121 ACTACCATCGGATCGGCTTA 58.009 50.000 6.43 0.00 0.00 3.09
2288 2466 1.991121 TACTACCATCGGATCGGCTT 58.009 50.000 6.43 0.00 0.00 4.35
2289 2467 1.612463 GTTACTACCATCGGATCGGCT 59.388 52.381 6.43 0.00 0.00 5.52
2290 2468 1.665161 CGTTACTACCATCGGATCGGC 60.665 57.143 6.43 0.00 0.00 5.54
2291 2469 1.605710 ACGTTACTACCATCGGATCGG 59.394 52.381 0.00 0.00 0.00 4.18
2292 2470 2.603892 CCACGTTACTACCATCGGATCG 60.604 54.545 0.00 0.00 0.00 3.69
2293 2471 2.861360 GCCACGTTACTACCATCGGATC 60.861 54.545 0.00 0.00 0.00 3.36
2295 2473 0.457035 GCCACGTTACTACCATCGGA 59.543 55.000 0.00 0.00 0.00 4.55
2296 2474 0.173935 TGCCACGTTACTACCATCGG 59.826 55.000 0.00 0.00 0.00 4.18
2297 2475 1.999048 TTGCCACGTTACTACCATCG 58.001 50.000 0.00 0.00 0.00 3.84
2298 2476 3.311596 GGATTTGCCACGTTACTACCATC 59.688 47.826 0.00 0.00 36.34 3.51
2299 2477 3.275999 GGATTTGCCACGTTACTACCAT 58.724 45.455 0.00 0.00 36.34 3.55
2300 2478 2.038689 TGGATTTGCCACGTTACTACCA 59.961 45.455 0.00 0.00 43.33 3.25
2301 2479 2.702261 TGGATTTGCCACGTTACTACC 58.298 47.619 0.00 0.00 43.33 3.18
2311 2489 2.367894 TCAGCAACAATTGGATTTGCCA 59.632 40.909 21.89 11.13 45.58 4.92
2312 2490 2.738314 GTCAGCAACAATTGGATTTGCC 59.262 45.455 21.89 8.97 45.58 4.52
2313 2491 3.430895 CAGTCAGCAACAATTGGATTTGC 59.569 43.478 19.33 19.33 44.93 3.68
2314 2492 4.624015 ACAGTCAGCAACAATTGGATTTG 58.376 39.130 10.83 6.65 0.00 2.32
2315 2493 4.942761 ACAGTCAGCAACAATTGGATTT 57.057 36.364 10.83 0.00 0.00 2.17
2317 2495 4.942761 AAACAGTCAGCAACAATTGGAT 57.057 36.364 10.83 0.00 0.00 3.41
2318 2496 5.843673 TTAAACAGTCAGCAACAATTGGA 57.156 34.783 10.83 0.00 0.00 3.53
2319 2497 6.146021 GGATTTAAACAGTCAGCAACAATTGG 59.854 38.462 10.83 0.00 0.00 3.16
2320 2498 6.146021 GGGATTTAAACAGTCAGCAACAATTG 59.854 38.462 3.24 3.24 0.00 2.32
2322 2500 5.279456 GGGGATTTAAACAGTCAGCAACAAT 60.279 40.000 0.00 0.00 0.00 2.71
2323 2501 4.038642 GGGGATTTAAACAGTCAGCAACAA 59.961 41.667 0.00 0.00 0.00 2.83
2324 2502 3.572255 GGGGATTTAAACAGTCAGCAACA 59.428 43.478 0.00 0.00 0.00 3.33
2325 2503 3.572255 TGGGGATTTAAACAGTCAGCAAC 59.428 43.478 0.00 0.00 0.00 4.17
2327 2505 3.517296 TGGGGATTTAAACAGTCAGCA 57.483 42.857 0.00 0.00 0.00 4.41
2328 2506 4.864704 TTTGGGGATTTAAACAGTCAGC 57.135 40.909 0.00 0.00 0.00 4.26
2329 2507 6.586082 CGATTTTTGGGGATTTAAACAGTCAG 59.414 38.462 0.00 0.00 0.00 3.51
2330 2508 6.451393 CGATTTTTGGGGATTTAAACAGTCA 58.549 36.000 0.00 0.00 0.00 3.41
2331 2509 5.347635 GCGATTTTTGGGGATTTAAACAGTC 59.652 40.000 0.00 0.00 0.00 3.51
2332 2510 5.234752 GCGATTTTTGGGGATTTAAACAGT 58.765 37.500 0.00 0.00 0.00 3.55
2333 2511 4.629634 GGCGATTTTTGGGGATTTAAACAG 59.370 41.667 0.00 0.00 0.00 3.16
2335 2513 4.570930 TGGCGATTTTTGGGGATTTAAAC 58.429 39.130 0.00 0.00 0.00 2.01
2336 2514 4.284746 ACTGGCGATTTTTGGGGATTTAAA 59.715 37.500 0.00 0.00 0.00 1.52
2337 2515 3.835395 ACTGGCGATTTTTGGGGATTTAA 59.165 39.130 0.00 0.00 0.00 1.52
2354 2620 1.173913 GGAACCACCACAATACTGGC 58.826 55.000 0.00 0.00 38.79 4.85
2357 2623 4.468510 TCGATTAGGAACCACCACAATACT 59.531 41.667 0.00 0.00 42.04 2.12
2360 2626 3.992943 TCGATTAGGAACCACCACAAT 57.007 42.857 0.00 0.00 42.04 2.71
2364 2630 1.557371 TGCATCGATTAGGAACCACCA 59.443 47.619 0.00 0.00 42.04 4.17
2366 2632 2.627945 TGTGCATCGATTAGGAACCAC 58.372 47.619 0.00 0.00 0.00 4.16
2367 2633 3.342377 TTGTGCATCGATTAGGAACCA 57.658 42.857 0.00 0.00 0.00 3.67
2368 2634 4.156008 AGTTTTGTGCATCGATTAGGAACC 59.844 41.667 0.00 0.00 0.00 3.62
2392 2661 5.738208 GCAGCTCAAAATATTTGGAGGATGG 60.738 44.000 26.84 8.93 38.42 3.51
2412 2681 1.997606 GCACAAATGGAAGAATGCAGC 59.002 47.619 0.00 0.00 33.27 5.25
2481 2750 7.453126 TCATGTTTACTTATGAACCCCATGTTT 59.547 33.333 0.00 0.00 37.29 2.83
2487 2756 7.175990 TGAAAGTCATGTTTACTTATGAACCCC 59.824 37.037 0.00 0.00 36.17 4.95
2489 2758 7.750903 GCTGAAAGTCATGTTTACTTATGAACC 59.249 37.037 0.00 0.00 36.17 3.62
2498 2767 9.846248 AATTATGAAGCTGAAAGTCATGTTTAC 57.154 29.630 7.90 0.00 32.62 2.01
2657 2926 0.839946 GGAGGAGGAGGCTTGCAATA 59.160 55.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.