Multiple sequence alignment - TraesCS5B01G337300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G337300 chr5B 100.000 4743 0 0 1 4743 520867919 520872661 0.000000e+00 8759
1 TraesCS5B01G337300 chr5B 100.000 3734 0 0 4969 8702 520872887 520876620 0.000000e+00 6896
2 TraesCS5B01G337300 chr5B 91.875 160 12 1 7232 7390 45271604 45271445 1.140000e-53 222
3 TraesCS5B01G337300 chr5D 91.214 3756 182 83 337 4004 431187930 431191625 0.000000e+00 4972
4 TraesCS5B01G337300 chr5D 94.994 2457 74 14 4969 7389 431193243 431195686 0.000000e+00 3810
5 TraesCS5B01G337300 chr5D 88.714 1400 89 31 7338 8702 431195682 431197047 0.000000e+00 1646
6 TraesCS5B01G337300 chr5D 92.904 761 30 13 4007 4743 431192138 431192898 0.000000e+00 1085
7 TraesCS5B01G337300 chr5D 79.470 302 38 13 1599 1891 167939965 167940251 8.920000e-45 193
8 TraesCS5B01G337300 chr5A 92.200 3218 174 42 753 3924 546523376 546526562 0.000000e+00 4481
9 TraesCS5B01G337300 chr5A 93.655 2175 73 32 4969 7108 546528295 546530439 0.000000e+00 3192
10 TraesCS5B01G337300 chr5A 85.060 1573 143 41 7193 8701 546530477 546532021 0.000000e+00 1519
11 TraesCS5B01G337300 chr5A 93.443 732 26 9 4021 4730 546527540 546528271 0.000000e+00 1066
12 TraesCS5B01G337300 chr5A 94.792 96 4 1 3911 4006 546526792 546526886 1.960000e-31 148
13 TraesCS5B01G337300 chr3D 94.355 620 27 4 1120 1738 580206517 580207129 0.000000e+00 944
14 TraesCS5B01G337300 chr3D 93.871 620 29 5 1120 1738 583553953 583553342 0.000000e+00 926
15 TraesCS5B01G337300 chr3D 93.528 618 32 4 1122 1738 501323496 501322886 0.000000e+00 913
16 TraesCS5B01G337300 chr7D 93.548 620 32 4 1120 1738 26670009 26669397 0.000000e+00 917
17 TraesCS5B01G337300 chr7D 93.387 620 33 4 1120 1738 609812377 609812989 0.000000e+00 911
18 TraesCS5B01G337300 chr7D 93.258 623 31 5 1120 1738 613746975 613747590 0.000000e+00 907
19 TraesCS5B01G337300 chr7D 92.742 620 37 4 1120 1738 40630516 40629904 0.000000e+00 889
20 TraesCS5B01G337300 chr7B 92.500 160 11 1 7232 7390 677889235 677889394 2.440000e-55 228
21 TraesCS5B01G337300 chr4B 92.500 160 11 1 7232 7390 344463457 344463298 2.440000e-55 228
22 TraesCS5B01G337300 chr6D 90.588 170 14 2 7225 7393 431160833 431160665 3.160000e-54 224
23 TraesCS5B01G337300 chr2D 91.875 160 12 1 7232 7390 291992052 291991893 1.140000e-53 222
24 TraesCS5B01G337300 chrUn 89.266 177 17 2 7216 7391 41734389 41734214 4.090000e-53 220
25 TraesCS5B01G337300 chr3B 89.266 177 17 2 7216 7391 789487850 789487675 4.090000e-53 220
26 TraesCS5B01G337300 chr7A 87.432 183 21 2 7223 7404 496609914 496610095 8.850000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G337300 chr5B 520867919 520876620 8701 False 7827.50 8759 100.0000 1 8702 2 chr5B.!!$F1 8701
1 TraesCS5B01G337300 chr5D 431187930 431197047 9117 False 2878.25 4972 91.9565 337 8702 4 chr5D.!!$F2 8365
2 TraesCS5B01G337300 chr5A 546523376 546532021 8645 False 2081.20 4481 91.8300 753 8701 5 chr5A.!!$F1 7948
3 TraesCS5B01G337300 chr3D 580206517 580207129 612 False 944.00 944 94.3550 1120 1738 1 chr3D.!!$F1 618
4 TraesCS5B01G337300 chr3D 583553342 583553953 611 True 926.00 926 93.8710 1120 1738 1 chr3D.!!$R2 618
5 TraesCS5B01G337300 chr3D 501322886 501323496 610 True 913.00 913 93.5280 1122 1738 1 chr3D.!!$R1 616
6 TraesCS5B01G337300 chr7D 26669397 26670009 612 True 917.00 917 93.5480 1120 1738 1 chr7D.!!$R1 618
7 TraesCS5B01G337300 chr7D 609812377 609812989 612 False 911.00 911 93.3870 1120 1738 1 chr7D.!!$F1 618
8 TraesCS5B01G337300 chr7D 613746975 613747590 615 False 907.00 907 93.2580 1120 1738 1 chr7D.!!$F2 618
9 TraesCS5B01G337300 chr7D 40629904 40630516 612 True 889.00 889 92.7420 1120 1738 1 chr7D.!!$R2 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.033504 GAGTGGAGTGCGGTTTGAGA 59.966 55.000 0.00 0.0 0.00 3.27 F
680 698 0.091176 GTGCGCGCTGTTTTATTTGC 59.909 50.000 33.29 0.0 0.00 3.68 F
1503 1593 0.603975 GCAGGTGAGCCTTTCGTTCT 60.604 55.000 0.00 0.0 44.18 3.01 F
1581 1671 0.742281 GAGCGCCACTGATGTGATGT 60.742 55.000 2.29 0.0 46.55 3.06 F
1583 1673 1.020861 GCGCCACTGATGTGATGTGA 61.021 55.000 0.00 0.0 46.55 3.58 F
2506 2603 1.131883 CCTGCGCTTTTCCATCTCTTG 59.868 52.381 9.73 0.0 0.00 3.02 F
4240 5248 0.853530 AGTGCCCCTCTGTTTTTCCT 59.146 50.000 0.00 0.0 0.00 3.36 F
4634 5642 1.553248 TGGATGAGAACGGGGTAAGTG 59.447 52.381 0.00 0.0 0.00 3.16 F
4635 5643 1.653151 GATGAGAACGGGGTAAGTGC 58.347 55.000 0.00 0.0 0.00 4.40 F
6121 7260 1.600957 CATTCTGAATCGCCTCGCAAT 59.399 47.619 0.00 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1438 0.868177 CACAAACCCGAAACGCCAAC 60.868 55.000 0.00 0.00 0.00 3.77 R
1887 1979 1.009829 CAACTGCTGTATCCGGAAGC 58.990 55.000 17.97 17.97 37.46 3.86 R
3485 3588 2.045524 TCTGCCCAATTCAAGCCAAAA 58.954 42.857 0.00 0.00 0.00 2.44 R
3756 3859 2.844654 TATGTACCCCGGTAACTGGA 57.155 50.000 0.00 0.00 45.28 3.86 R
3812 3915 3.545703 CATGTCCACATTTACCCTCTCC 58.454 50.000 0.00 0.00 33.61 3.71 R
4621 5629 0.320697 AGACAGCACTTACCCCGTTC 59.679 55.000 0.00 0.00 0.00 3.95 R
5914 7050 0.863144 GTTTTCGCGGTGCTTACAGA 59.137 50.000 6.13 0.00 0.00 3.41 R
6121 7260 1.181741 AGAGCAGTGCCTCGTCTCAA 61.182 55.000 12.58 0.00 36.95 3.02 R
6162 7301 2.224018 ACAATGTTGCCCACATGTCAAC 60.224 45.455 17.60 17.60 46.23 3.18 R
7768 9024 0.182061 CTGGCACTGGGTATGCTGAT 59.818 55.000 0.00 0.00 42.93 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.931512 GGGAGAACGAGAGAAGTGAG 57.068 55.000 0.00 0.00 0.00 3.51
20 21 2.164338 GGGAGAACGAGAGAAGTGAGT 58.836 52.381 0.00 0.00 0.00 3.41
21 22 2.094957 GGGAGAACGAGAGAAGTGAGTG 60.095 54.545 0.00 0.00 0.00 3.51
22 23 2.094957 GGAGAACGAGAGAAGTGAGTGG 60.095 54.545 0.00 0.00 0.00 4.00
23 24 2.814919 GAGAACGAGAGAAGTGAGTGGA 59.185 50.000 0.00 0.00 0.00 4.02
24 25 2.817258 AGAACGAGAGAAGTGAGTGGAG 59.183 50.000 0.00 0.00 0.00 3.86
25 26 2.279935 ACGAGAGAAGTGAGTGGAGT 57.720 50.000 0.00 0.00 0.00 3.85
26 27 1.883275 ACGAGAGAAGTGAGTGGAGTG 59.117 52.381 0.00 0.00 0.00 3.51
27 28 1.402194 CGAGAGAAGTGAGTGGAGTGC 60.402 57.143 0.00 0.00 0.00 4.40
28 29 0.600557 AGAGAAGTGAGTGGAGTGCG 59.399 55.000 0.00 0.00 0.00 5.34
29 30 0.389166 GAGAAGTGAGTGGAGTGCGG 60.389 60.000 0.00 0.00 0.00 5.69
30 31 1.115930 AGAAGTGAGTGGAGTGCGGT 61.116 55.000 0.00 0.00 0.00 5.68
31 32 0.249911 GAAGTGAGTGGAGTGCGGTT 60.250 55.000 0.00 0.00 0.00 4.44
32 33 0.180406 AAGTGAGTGGAGTGCGGTTT 59.820 50.000 0.00 0.00 0.00 3.27
33 34 0.532862 AGTGAGTGGAGTGCGGTTTG 60.533 55.000 0.00 0.00 0.00 2.93
34 35 0.531974 GTGAGTGGAGTGCGGTTTGA 60.532 55.000 0.00 0.00 0.00 2.69
35 36 0.249868 TGAGTGGAGTGCGGTTTGAG 60.250 55.000 0.00 0.00 0.00 3.02
36 37 0.033504 GAGTGGAGTGCGGTTTGAGA 59.966 55.000 0.00 0.00 0.00 3.27
37 38 0.249911 AGTGGAGTGCGGTTTGAGAC 60.250 55.000 0.00 0.00 0.00 3.36
38 39 0.249911 GTGGAGTGCGGTTTGAGACT 60.250 55.000 0.00 0.00 0.00 3.24
39 40 1.000506 GTGGAGTGCGGTTTGAGACTA 59.999 52.381 0.00 0.00 0.00 2.59
40 41 1.272490 TGGAGTGCGGTTTGAGACTAG 59.728 52.381 0.00 0.00 0.00 2.57
41 42 1.404315 GGAGTGCGGTTTGAGACTAGG 60.404 57.143 0.00 0.00 0.00 3.02
42 43 1.544691 GAGTGCGGTTTGAGACTAGGA 59.455 52.381 0.00 0.00 0.00 2.94
43 44 2.166664 GAGTGCGGTTTGAGACTAGGAT 59.833 50.000 0.00 0.00 0.00 3.24
44 45 2.567615 AGTGCGGTTTGAGACTAGGATT 59.432 45.455 0.00 0.00 0.00 3.01
45 46 3.008049 AGTGCGGTTTGAGACTAGGATTT 59.992 43.478 0.00 0.00 0.00 2.17
46 47 3.371285 GTGCGGTTTGAGACTAGGATTTC 59.629 47.826 0.00 0.00 0.00 2.17
47 48 2.603560 GCGGTTTGAGACTAGGATTTCG 59.396 50.000 0.00 0.00 0.00 3.46
48 49 3.187700 CGGTTTGAGACTAGGATTTCGG 58.812 50.000 0.00 0.00 0.00 4.30
49 50 3.368116 CGGTTTGAGACTAGGATTTCGGT 60.368 47.826 0.00 0.00 0.00 4.69
50 51 4.182339 GGTTTGAGACTAGGATTTCGGTC 58.818 47.826 0.00 0.00 0.00 4.79
51 52 3.777465 TTGAGACTAGGATTTCGGTCG 57.223 47.619 0.00 0.00 34.34 4.79
52 53 2.022195 TGAGACTAGGATTTCGGTCGG 58.978 52.381 0.00 0.00 34.34 4.79
53 54 2.295885 GAGACTAGGATTTCGGTCGGA 58.704 52.381 0.00 0.00 34.34 4.55
54 55 2.686915 GAGACTAGGATTTCGGTCGGAA 59.313 50.000 0.00 0.00 34.34 4.30
55 56 3.297736 AGACTAGGATTTCGGTCGGAAT 58.702 45.455 0.00 0.00 33.85 3.01
56 57 3.705072 AGACTAGGATTTCGGTCGGAATT 59.295 43.478 0.00 0.00 33.85 2.17
57 58 4.891756 AGACTAGGATTTCGGTCGGAATTA 59.108 41.667 0.00 0.00 33.85 1.40
58 59 4.941657 ACTAGGATTTCGGTCGGAATTAC 58.058 43.478 0.00 0.00 33.85 1.89
59 60 4.648307 ACTAGGATTTCGGTCGGAATTACT 59.352 41.667 0.00 3.73 34.41 2.24
60 61 4.482952 AGGATTTCGGTCGGAATTACTT 57.517 40.909 0.00 0.00 33.85 2.24
61 62 4.840271 AGGATTTCGGTCGGAATTACTTT 58.160 39.130 0.00 0.00 33.85 2.66
62 63 5.250982 AGGATTTCGGTCGGAATTACTTTT 58.749 37.500 0.00 0.00 33.85 2.27
63 64 5.708697 AGGATTTCGGTCGGAATTACTTTTT 59.291 36.000 0.00 0.00 33.85 1.94
64 65 5.798434 GGATTTCGGTCGGAATTACTTTTTG 59.202 40.000 0.00 0.00 33.85 2.44
65 66 5.754543 TTTCGGTCGGAATTACTTTTTGT 57.245 34.783 0.00 0.00 33.85 2.83
66 67 4.735662 TCGGTCGGAATTACTTTTTGTG 57.264 40.909 0.00 0.00 0.00 3.33
67 68 3.499157 TCGGTCGGAATTACTTTTTGTGG 59.501 43.478 0.00 0.00 0.00 4.17
68 69 3.365565 CGGTCGGAATTACTTTTTGTGGG 60.366 47.826 0.00 0.00 0.00 4.61
69 70 3.057104 GGTCGGAATTACTTTTTGTGGGG 60.057 47.826 0.00 0.00 0.00 4.96
70 71 3.057104 GTCGGAATTACTTTTTGTGGGGG 60.057 47.826 0.00 0.00 0.00 5.40
71 72 3.158676 CGGAATTACTTTTTGTGGGGGA 58.841 45.455 0.00 0.00 0.00 4.81
72 73 3.192633 CGGAATTACTTTTTGTGGGGGAG 59.807 47.826 0.00 0.00 0.00 4.30
73 74 3.513912 GGAATTACTTTTTGTGGGGGAGG 59.486 47.826 0.00 0.00 0.00 4.30
74 75 4.412843 GAATTACTTTTTGTGGGGGAGGA 58.587 43.478 0.00 0.00 0.00 3.71
75 76 4.692523 ATTACTTTTTGTGGGGGAGGAT 57.307 40.909 0.00 0.00 0.00 3.24
76 77 2.309136 ACTTTTTGTGGGGGAGGATG 57.691 50.000 0.00 0.00 0.00 3.51
77 78 1.203174 ACTTTTTGTGGGGGAGGATGG 60.203 52.381 0.00 0.00 0.00 3.51
78 79 0.863956 TTTTTGTGGGGGAGGATGGT 59.136 50.000 0.00 0.00 0.00 3.55
79 80 0.114168 TTTTGTGGGGGAGGATGGTG 59.886 55.000 0.00 0.00 0.00 4.17
80 81 1.799157 TTTGTGGGGGAGGATGGTGG 61.799 60.000 0.00 0.00 0.00 4.61
81 82 3.420482 GTGGGGGAGGATGGTGGG 61.420 72.222 0.00 0.00 0.00 4.61
126 127 4.838486 CGGCGTCTGAGCTCGTCC 62.838 72.222 9.64 4.50 37.29 4.79
127 128 4.500116 GGCGTCTGAGCTCGTCCC 62.500 72.222 9.64 1.15 37.29 4.46
128 129 3.749064 GCGTCTGAGCTCGTCCCA 61.749 66.667 9.64 0.00 0.00 4.37
129 130 3.069980 GCGTCTGAGCTCGTCCCAT 62.070 63.158 9.64 0.00 0.00 4.00
130 131 1.064946 CGTCTGAGCTCGTCCCATC 59.935 63.158 9.64 0.00 0.00 3.51
131 132 1.439644 GTCTGAGCTCGTCCCATCC 59.560 63.158 9.64 0.00 0.00 3.51
132 133 1.040339 GTCTGAGCTCGTCCCATCCT 61.040 60.000 9.64 0.00 0.00 3.24
133 134 0.753479 TCTGAGCTCGTCCCATCCTC 60.753 60.000 9.64 0.00 0.00 3.71
134 135 1.743321 CTGAGCTCGTCCCATCCTCC 61.743 65.000 9.64 0.00 0.00 4.30
135 136 2.444895 AGCTCGTCCCATCCTCCC 60.445 66.667 0.00 0.00 0.00 4.30
136 137 3.551407 GCTCGTCCCATCCTCCCC 61.551 72.222 0.00 0.00 0.00 4.81
137 138 2.041922 CTCGTCCCATCCTCCCCA 60.042 66.667 0.00 0.00 0.00 4.96
138 139 1.460305 CTCGTCCCATCCTCCCCAT 60.460 63.158 0.00 0.00 0.00 4.00
139 140 0.178932 CTCGTCCCATCCTCCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
140 141 0.471211 TCGTCCCATCCTCCCCATAC 60.471 60.000 0.00 0.00 0.00 2.39
141 142 0.762842 CGTCCCATCCTCCCCATACA 60.763 60.000 0.00 0.00 0.00 2.29
142 143 1.518367 GTCCCATCCTCCCCATACAA 58.482 55.000 0.00 0.00 0.00 2.41
143 144 1.421646 GTCCCATCCTCCCCATACAAG 59.578 57.143 0.00 0.00 0.00 3.16
144 145 1.296832 TCCCATCCTCCCCATACAAGA 59.703 52.381 0.00 0.00 0.00 3.02
145 146 2.089408 TCCCATCCTCCCCATACAAGAT 60.089 50.000 0.00 0.00 0.00 2.40
146 147 3.145861 TCCCATCCTCCCCATACAAGATA 59.854 47.826 0.00 0.00 0.00 1.98
147 148 4.114597 CCCATCCTCCCCATACAAGATAT 58.885 47.826 0.00 0.00 0.00 1.63
148 149 4.080129 CCCATCCTCCCCATACAAGATATG 60.080 50.000 0.00 0.00 0.00 1.78
149 150 4.080129 CCATCCTCCCCATACAAGATATGG 60.080 50.000 6.05 6.05 43.08 2.74
156 157 4.581309 CCATACAAGATATGGGCTGGAT 57.419 45.455 5.22 0.00 40.50 3.41
157 158 5.698741 CCATACAAGATATGGGCTGGATA 57.301 43.478 5.22 0.00 40.50 2.59
158 159 6.257994 CCATACAAGATATGGGCTGGATAT 57.742 41.667 5.22 0.00 40.50 1.63
159 160 6.060136 CCATACAAGATATGGGCTGGATATG 58.940 44.000 5.22 0.00 40.50 1.78
160 161 4.581309 ACAAGATATGGGCTGGATATGG 57.419 45.455 0.00 0.00 0.00 2.74
161 162 3.267812 ACAAGATATGGGCTGGATATGGG 59.732 47.826 0.00 0.00 0.00 4.00
162 163 2.496297 AGATATGGGCTGGATATGGGG 58.504 52.381 0.00 0.00 0.00 4.96
163 164 2.208872 GATATGGGCTGGATATGGGGT 58.791 52.381 0.00 0.00 0.00 4.95
164 165 2.147946 TATGGGCTGGATATGGGGTT 57.852 50.000 0.00 0.00 0.00 4.11
165 166 2.147946 ATGGGCTGGATATGGGGTTA 57.852 50.000 0.00 0.00 0.00 2.85
166 167 1.145571 TGGGCTGGATATGGGGTTAC 58.854 55.000 0.00 0.00 0.00 2.50
167 168 0.404426 GGGCTGGATATGGGGTTACC 59.596 60.000 0.00 0.00 40.81 2.85
176 177 2.768046 TGGGGTTACCAGACAGACC 58.232 57.895 2.98 0.00 46.80 3.85
177 178 0.104882 TGGGGTTACCAGACAGACCA 60.105 55.000 2.98 0.00 46.80 4.02
178 179 1.061546 GGGGTTACCAGACAGACCAA 58.938 55.000 2.98 0.00 39.85 3.67
179 180 1.422402 GGGGTTACCAGACAGACCAAA 59.578 52.381 2.98 0.00 39.85 3.28
180 181 2.501261 GGGTTACCAGACAGACCAAAC 58.499 52.381 2.98 0.00 36.50 2.93
181 182 2.158726 GGGTTACCAGACAGACCAAACA 60.159 50.000 2.98 0.00 36.50 2.83
182 183 3.497942 GGGTTACCAGACAGACCAAACAT 60.498 47.826 2.98 0.00 36.50 2.71
183 184 4.142038 GGTTACCAGACAGACCAAACATT 58.858 43.478 0.00 0.00 32.41 2.71
184 185 4.583073 GGTTACCAGACAGACCAAACATTT 59.417 41.667 0.00 0.00 32.41 2.32
185 186 5.507315 GGTTACCAGACAGACCAAACATTTG 60.507 44.000 0.00 0.00 37.90 2.32
196 197 2.478831 CAAACATTTGGGTTGGGTTCG 58.521 47.619 0.00 0.00 34.59 3.95
197 198 2.074729 AACATTTGGGTTGGGTTCGA 57.925 45.000 0.00 0.00 0.00 3.71
198 199 1.616159 ACATTTGGGTTGGGTTCGAG 58.384 50.000 0.00 0.00 0.00 4.04
199 200 1.144093 ACATTTGGGTTGGGTTCGAGA 59.856 47.619 0.00 0.00 0.00 4.04
200 201 2.235016 CATTTGGGTTGGGTTCGAGAA 58.765 47.619 0.00 0.00 0.00 2.87
201 202 1.975660 TTTGGGTTGGGTTCGAGAAG 58.024 50.000 0.00 0.00 0.00 2.85
202 203 0.109723 TTGGGTTGGGTTCGAGAAGG 59.890 55.000 0.00 0.00 0.00 3.46
203 204 1.002502 GGGTTGGGTTCGAGAAGGG 60.003 63.158 0.00 0.00 0.00 3.95
204 205 1.759236 GGTTGGGTTCGAGAAGGGT 59.241 57.895 0.00 0.00 0.00 4.34
205 206 0.605589 GGTTGGGTTCGAGAAGGGTG 60.606 60.000 0.00 0.00 0.00 4.61
206 207 0.605589 GTTGGGTTCGAGAAGGGTGG 60.606 60.000 0.00 0.00 0.00 4.61
207 208 1.057851 TTGGGTTCGAGAAGGGTGGT 61.058 55.000 0.00 0.00 0.00 4.16
208 209 1.057851 TGGGTTCGAGAAGGGTGGTT 61.058 55.000 0.00 0.00 0.00 3.67
209 210 0.605589 GGGTTCGAGAAGGGTGGTTG 60.606 60.000 0.00 0.00 0.00 3.77
210 211 0.605589 GGTTCGAGAAGGGTGGTTGG 60.606 60.000 0.00 0.00 0.00 3.77
211 212 0.605589 GTTCGAGAAGGGTGGTTGGG 60.606 60.000 0.00 0.00 0.00 4.12
212 213 1.057851 TTCGAGAAGGGTGGTTGGGT 61.058 55.000 0.00 0.00 0.00 4.51
213 214 1.302511 CGAGAAGGGTGGTTGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
214 215 1.764571 CGAGAAGGGTGGTTGGGTGA 61.765 60.000 0.00 0.00 0.00 4.02
215 216 0.250770 GAGAAGGGTGGTTGGGTGAC 60.251 60.000 0.00 0.00 0.00 3.67
229 230 2.194201 GGTGACCAAATTTCCTCCGA 57.806 50.000 0.00 0.00 0.00 4.55
230 231 2.084546 GGTGACCAAATTTCCTCCGAG 58.915 52.381 0.00 0.00 0.00 4.63
231 232 1.468914 GTGACCAAATTTCCTCCGAGC 59.531 52.381 0.00 0.00 0.00 5.03
232 233 1.073125 TGACCAAATTTCCTCCGAGCA 59.927 47.619 0.00 0.00 0.00 4.26
233 234 1.468914 GACCAAATTTCCTCCGAGCAC 59.531 52.381 0.00 0.00 0.00 4.40
234 235 1.073923 ACCAAATTTCCTCCGAGCACT 59.926 47.619 0.00 0.00 0.00 4.40
235 236 2.304761 ACCAAATTTCCTCCGAGCACTA 59.695 45.455 0.00 0.00 0.00 2.74
236 237 3.244770 ACCAAATTTCCTCCGAGCACTAA 60.245 43.478 0.00 0.00 0.00 2.24
237 238 3.127030 CCAAATTTCCTCCGAGCACTAAC 59.873 47.826 0.00 0.00 0.00 2.34
238 239 2.693267 ATTTCCTCCGAGCACTAACC 57.307 50.000 0.00 0.00 0.00 2.85
239 240 0.245539 TTTCCTCCGAGCACTAACCG 59.754 55.000 0.00 0.00 0.00 4.44
240 241 1.601419 TTCCTCCGAGCACTAACCGG 61.601 60.000 0.00 0.00 44.22 5.28
241 242 2.494918 CTCCGAGCACTAACCGGG 59.505 66.667 6.32 0.00 43.16 5.73
242 243 2.283388 TCCGAGCACTAACCGGGT 60.283 61.111 6.32 0.00 43.16 5.28
243 244 1.001020 TCCGAGCACTAACCGGGTA 60.001 57.895 6.32 1.12 43.16 3.69
244 245 1.033746 TCCGAGCACTAACCGGGTAG 61.034 60.000 25.31 25.31 43.16 3.18
245 246 1.226888 CGAGCACTAACCGGGTAGC 60.227 63.158 26.78 14.70 0.00 3.58
246 247 1.143401 GAGCACTAACCGGGTAGCC 59.857 63.158 26.78 17.23 0.00 3.93
247 248 2.188731 GCACTAACCGGGTAGCCC 59.811 66.667 26.78 13.59 41.09 5.19
269 270 2.115695 GGGCGTTTGGGTGGGTTA 59.884 61.111 0.00 0.00 0.00 2.85
270 271 1.974875 GGGCGTTTGGGTGGGTTAG 60.975 63.158 0.00 0.00 0.00 2.34
271 272 1.974875 GGCGTTTGGGTGGGTTAGG 60.975 63.158 0.00 0.00 0.00 2.69
272 273 1.974875 GCGTTTGGGTGGGTTAGGG 60.975 63.158 0.00 0.00 0.00 3.53
273 274 1.457165 CGTTTGGGTGGGTTAGGGT 59.543 57.895 0.00 0.00 0.00 4.34
274 275 0.691904 CGTTTGGGTGGGTTAGGGTA 59.308 55.000 0.00 0.00 0.00 3.69
275 276 1.611410 CGTTTGGGTGGGTTAGGGTAC 60.611 57.143 0.00 0.00 0.00 3.34
276 277 1.706866 GTTTGGGTGGGTTAGGGTACT 59.293 52.381 0.00 0.00 0.00 2.73
277 278 1.660242 TTGGGTGGGTTAGGGTACTC 58.340 55.000 0.00 0.00 0.00 2.59
278 279 0.252835 TGGGTGGGTTAGGGTACTCC 60.253 60.000 0.00 0.00 0.00 3.85
290 291 1.274447 GGGTACTCCCGGTGTATATGC 59.726 57.143 0.00 0.00 44.74 3.14
291 292 2.245582 GGTACTCCCGGTGTATATGCT 58.754 52.381 0.00 0.00 0.00 3.79
292 293 2.230750 GGTACTCCCGGTGTATATGCTC 59.769 54.545 0.00 0.00 0.00 4.26
293 294 2.383442 ACTCCCGGTGTATATGCTCT 57.617 50.000 0.00 0.00 0.00 4.09
294 295 3.520691 ACTCCCGGTGTATATGCTCTA 57.479 47.619 0.00 0.00 0.00 2.43
295 296 3.840991 ACTCCCGGTGTATATGCTCTAA 58.159 45.455 0.00 0.00 0.00 2.10
296 297 4.417437 ACTCCCGGTGTATATGCTCTAAT 58.583 43.478 0.00 0.00 0.00 1.73
297 298 4.220821 ACTCCCGGTGTATATGCTCTAATG 59.779 45.833 0.00 0.00 0.00 1.90
298 299 3.056107 TCCCGGTGTATATGCTCTAATGC 60.056 47.826 0.00 0.00 0.00 3.56
299 300 3.055819 CCCGGTGTATATGCTCTAATGCT 60.056 47.826 0.00 0.00 0.00 3.79
300 301 4.563580 CCCGGTGTATATGCTCTAATGCTT 60.564 45.833 0.00 0.00 0.00 3.91
301 302 4.627467 CCGGTGTATATGCTCTAATGCTTC 59.373 45.833 0.00 0.00 0.00 3.86
302 303 5.230182 CGGTGTATATGCTCTAATGCTTCA 58.770 41.667 0.00 0.00 0.00 3.02
303 304 5.696270 CGGTGTATATGCTCTAATGCTTCAA 59.304 40.000 0.00 0.00 0.00 2.69
304 305 6.202762 CGGTGTATATGCTCTAATGCTTCAAA 59.797 38.462 0.00 0.00 0.00 2.69
305 306 7.254761 CGGTGTATATGCTCTAATGCTTCAAAA 60.255 37.037 0.00 0.00 0.00 2.44
306 307 7.857885 GGTGTATATGCTCTAATGCTTCAAAAC 59.142 37.037 0.00 0.00 0.00 2.43
307 308 8.616076 GTGTATATGCTCTAATGCTTCAAAACT 58.384 33.333 0.00 0.00 0.00 2.66
308 309 9.830975 TGTATATGCTCTAATGCTTCAAAACTA 57.169 29.630 0.00 0.00 0.00 2.24
311 312 7.928307 ATGCTCTAATGCTTCAAAACTAAGA 57.072 32.000 0.00 0.00 0.00 2.10
312 313 7.744087 TGCTCTAATGCTTCAAAACTAAGAA 57.256 32.000 0.00 0.00 0.00 2.52
313 314 8.340618 TGCTCTAATGCTTCAAAACTAAGAAT 57.659 30.769 0.00 0.00 0.00 2.40
314 315 8.239314 TGCTCTAATGCTTCAAAACTAAGAATG 58.761 33.333 0.00 0.00 0.00 2.67
315 316 7.219726 GCTCTAATGCTTCAAAACTAAGAATGC 59.780 37.037 0.00 0.00 0.00 3.56
316 317 8.340618 TCTAATGCTTCAAAACTAAGAATGCT 57.659 30.769 0.00 0.00 0.00 3.79
317 318 8.796475 TCTAATGCTTCAAAACTAAGAATGCTT 58.204 29.630 0.00 0.00 38.15 3.91
328 329 3.611766 AAGAATGCTTAGTAGGCGTGT 57.388 42.857 0.00 0.00 31.07 4.49
329 330 3.611766 AGAATGCTTAGTAGGCGTGTT 57.388 42.857 0.00 0.00 0.00 3.32
330 331 4.730949 AGAATGCTTAGTAGGCGTGTTA 57.269 40.909 0.00 0.00 0.00 2.41
331 332 5.080969 AGAATGCTTAGTAGGCGTGTTAA 57.919 39.130 0.00 0.00 0.00 2.01
332 333 5.484715 AGAATGCTTAGTAGGCGTGTTAAA 58.515 37.500 0.00 0.00 0.00 1.52
333 334 5.935789 AGAATGCTTAGTAGGCGTGTTAAAA 59.064 36.000 0.00 0.00 0.00 1.52
334 335 6.428771 AGAATGCTTAGTAGGCGTGTTAAAAA 59.571 34.615 0.00 0.00 0.00 1.94
394 395 2.289547 GCCTAAGCAACGAACAAGACAA 59.710 45.455 0.00 0.00 39.53 3.18
395 396 3.058224 GCCTAAGCAACGAACAAGACAAT 60.058 43.478 0.00 0.00 39.53 2.71
398 399 6.077838 CCTAAGCAACGAACAAGACAATAAC 58.922 40.000 0.00 0.00 0.00 1.89
412 413 6.642707 AGACAATAACCAAATTCAAACCGA 57.357 33.333 0.00 0.00 0.00 4.69
415 416 2.785713 AACCAAATTCAAACCGACCG 57.214 45.000 0.00 0.00 0.00 4.79
416 417 1.682740 ACCAAATTCAAACCGACCGT 58.317 45.000 0.00 0.00 0.00 4.83
418 419 1.068816 CCAAATTCAAACCGACCGTCC 60.069 52.381 0.00 0.00 0.00 4.79
419 420 1.604755 CAAATTCAAACCGACCGTCCA 59.395 47.619 0.00 0.00 0.00 4.02
422 423 1.152989 TTCAAACCGACCGTCCAACG 61.153 55.000 0.00 0.00 42.11 4.10
423 424 1.884004 CAAACCGACCGTCCAACGT 60.884 57.895 0.00 0.00 40.58 3.99
424 425 0.597118 CAAACCGACCGTCCAACGTA 60.597 55.000 0.00 0.00 40.58 3.57
425 426 0.318120 AAACCGACCGTCCAACGTAT 59.682 50.000 0.00 0.00 40.58 3.06
426 427 0.388907 AACCGACCGTCCAACGTATG 60.389 55.000 0.00 0.00 40.58 2.39
427 428 2.162754 CCGACCGTCCAACGTATGC 61.163 63.158 0.00 0.00 40.58 3.14
428 429 1.153901 CGACCGTCCAACGTATGCT 60.154 57.895 0.00 0.00 40.58 3.79
429 430 0.099259 CGACCGTCCAACGTATGCTA 59.901 55.000 0.00 0.00 40.58 3.49
453 454 4.932200 CCACTAGAGCTTACTCCAAGTTTG 59.068 45.833 0.00 0.00 44.65 2.93
461 462 5.819901 AGCTTACTCCAAGTTTGCAGATATC 59.180 40.000 0.00 0.00 36.55 1.63
472 473 3.667497 TGCAGATATCCGTCCAAGATC 57.333 47.619 0.00 0.00 0.00 2.75
509 510 3.681789 GCTTCTGCTACTCGACGC 58.318 61.111 0.00 0.00 36.03 5.19
514 515 1.589993 CTGCTACTCGACGCCCATG 60.590 63.158 0.00 0.00 0.00 3.66
515 516 2.279517 GCTACTCGACGCCCATGG 60.280 66.667 4.14 4.14 0.00 3.66
516 517 2.279517 CTACTCGACGCCCATGGC 60.280 66.667 6.09 0.58 46.75 4.40
529 530 0.394762 CCATGGCAGGCACATACAGT 60.395 55.000 0.00 0.00 0.00 3.55
597 599 2.985282 AGTGTGCGCCACAATGGG 60.985 61.111 24.48 0.00 46.28 4.00
613 620 2.171725 GGGCGAAGTACCGATGCAC 61.172 63.158 0.00 0.00 0.00 4.57
676 694 2.478746 CCGTGCGCGCTGTTTTAT 59.521 55.556 33.29 0.00 36.67 1.40
680 698 0.091176 GTGCGCGCTGTTTTATTTGC 59.909 50.000 33.29 0.00 0.00 3.68
686 704 2.604969 GCTGTTTTATTTGCGACCGA 57.395 45.000 0.00 0.00 0.00 4.69
687 705 2.239201 GCTGTTTTATTTGCGACCGAC 58.761 47.619 0.00 0.00 0.00 4.79
714 732 0.804989 CCGAGCAGGTGAATTTGACC 59.195 55.000 0.00 0.00 34.51 4.02
722 740 3.055891 CAGGTGAATTTGACCCCATTTCC 60.056 47.826 1.01 0.00 33.51 3.13
728 746 5.606329 TGAATTTGACCCCATTTCCTTTTCT 59.394 36.000 0.00 0.00 0.00 2.52
733 754 5.924356 TGACCCCATTTCCTTTTCTTTTTC 58.076 37.500 0.00 0.00 0.00 2.29
735 756 6.157820 TGACCCCATTTCCTTTTCTTTTTCTT 59.842 34.615 0.00 0.00 0.00 2.52
803 825 1.032114 GCGGGGCAGCAGATAAACTT 61.032 55.000 0.00 0.00 37.05 2.66
906 957 2.317378 CCTCCCCCTTTTCTCCCCC 61.317 68.421 0.00 0.00 0.00 5.40
961 1015 2.379459 GCTTCCCCTCCCTCCCTTC 61.379 68.421 0.00 0.00 0.00 3.46
975 1029 1.141019 CCTTCCGAAATCCGCGAGA 59.859 57.895 8.23 3.13 36.84 4.04
1333 1422 4.508128 ACGCGGCGGTACTGATGG 62.508 66.667 27.37 0.00 0.00 3.51
1347 1436 2.224233 ACTGATGGCTGATGATTCTCGG 60.224 50.000 0.00 0.00 0.00 4.63
1348 1438 1.071228 TGATGGCTGATGATTCTCGGG 59.929 52.381 0.00 0.00 0.00 5.14
1503 1593 0.603975 GCAGGTGAGCCTTTCGTTCT 60.604 55.000 0.00 0.00 44.18 3.01
1507 1597 1.542547 GGTGAGCCTTTCGTTCTTCCA 60.543 52.381 0.00 0.00 0.00 3.53
1555 1645 2.094390 TCGTGCGCTAGTTTAGGAATGT 60.094 45.455 9.73 0.00 0.00 2.71
1580 1670 1.434622 GGAGCGCCACTGATGTGATG 61.435 60.000 2.29 0.00 46.55 3.07
1581 1671 0.742281 GAGCGCCACTGATGTGATGT 60.742 55.000 2.29 0.00 46.55 3.06
1582 1672 1.022982 AGCGCCACTGATGTGATGTG 61.023 55.000 2.29 0.00 46.55 3.21
1583 1673 1.020861 GCGCCACTGATGTGATGTGA 61.021 55.000 0.00 0.00 46.55 3.58
1584 1674 1.660167 CGCCACTGATGTGATGTGAT 58.340 50.000 0.00 0.00 46.55 3.06
1615 1705 5.570344 TGTAGATGACTCGAAATTCGTCTC 58.430 41.667 15.34 10.88 41.35 3.36
1663 1753 2.827642 GTGCTGAGCATCCCTGGC 60.828 66.667 11.58 0.00 41.91 4.85
1744 1835 4.963318 TCATTCCATCCCATCACTACTC 57.037 45.455 0.00 0.00 0.00 2.59
1887 1979 4.211374 GCTCATTGGCACTTAGTATTACCG 59.789 45.833 0.00 0.00 0.00 4.02
1978 2070 5.390885 CGTCACCACTGTATTTGAGATTTGG 60.391 44.000 0.00 0.00 0.00 3.28
1988 2080 2.905415 TGAGATTTGGGAGTTGCCAT 57.095 45.000 0.00 0.00 38.95 4.40
2013 2105 3.487372 AGGGCTTTTGAGTGGTCTAAAC 58.513 45.455 0.00 0.00 0.00 2.01
2028 2120 3.121445 GTCTAAACGCTAACACTGTCAGC 59.879 47.826 0.00 0.00 0.00 4.26
2068 2163 7.254455 GGTGTTTACTTGAATGATGGAGTATCG 60.254 40.741 0.00 0.00 38.71 2.92
2149 2244 5.482526 GGGGGTCCTAGAGCATTTTTAAAAA 59.517 40.000 15.38 15.38 0.00 1.94
2215 2310 9.382275 AGCATATTTTGATTGATTTTAACCACC 57.618 29.630 0.00 0.00 0.00 4.61
2288 2383 7.170320 GCTGATGCATTATTTTATTCCCAAGTG 59.830 37.037 0.00 0.00 39.41 3.16
2313 2410 6.479990 GGTGCATTTCTTTTTCTTTAACTGCT 59.520 34.615 0.00 0.00 0.00 4.24
2503 2600 1.666189 GTACCTGCGCTTTTCCATCTC 59.334 52.381 9.73 0.00 0.00 2.75
2506 2603 1.131883 CCTGCGCTTTTCCATCTCTTG 59.868 52.381 9.73 0.00 0.00 3.02
2507 2604 1.808945 CTGCGCTTTTCCATCTCTTGT 59.191 47.619 9.73 0.00 0.00 3.16
2515 2612 8.342634 GCGCTTTTCCATCTCTTGTTAAATATA 58.657 33.333 0.00 0.00 0.00 0.86
2711 2810 2.555123 GTCGCAAGGCCAAGATCAA 58.445 52.632 5.01 0.00 34.37 2.57
2732 2831 6.753180 TCAAGATAGCACCTCAGATAATGTC 58.247 40.000 0.00 0.00 0.00 3.06
2757 2856 6.766944 CCGATCTCTCTACAGGTAAGACTTTA 59.233 42.308 0.00 0.00 0.00 1.85
2758 2857 7.282675 CCGATCTCTCTACAGGTAAGACTTTAA 59.717 40.741 0.00 0.00 0.00 1.52
2786 2885 9.700831 AGTTACATTTGCCTCTATTTTATCCTT 57.299 29.630 0.00 0.00 0.00 3.36
2824 2925 5.188327 TCTTAGATCAGTATGTCGCTTGG 57.812 43.478 0.00 0.00 37.40 3.61
3002 3103 4.585162 CGAGGTAAACAGGGATCTCTGTAT 59.415 45.833 28.29 15.38 46.17 2.29
3022 3123 9.839817 TCTGTATATTTGTGGATTTTATTCGGA 57.160 29.630 0.00 0.00 0.00 4.55
3291 3392 4.202377 TGTCGGTCCCTCATTTTGTCTTTA 60.202 41.667 0.00 0.00 0.00 1.85
3322 3424 6.491394 TGATTTTGTGTTTCGTCCTGTTTAG 58.509 36.000 0.00 0.00 0.00 1.85
3339 3441 9.679661 TCCTGTTTAGCATTTAATGATCTGTTA 57.320 29.630 9.36 0.00 0.00 2.41
3374 3476 6.037281 GGAAACGGAGGATTTGATAGAAGAAC 59.963 42.308 0.00 0.00 0.00 3.01
3485 3588 9.199982 CTTGTTTTCTTCATGCTCATATTTTGT 57.800 29.630 0.00 0.00 0.00 2.83
3756 3859 5.005107 GTCACGTAACTGACTCGTTCTTTTT 59.995 40.000 0.00 0.00 38.05 1.94
3812 3915 4.946784 AGCTATTAAAGTGCTCAAACCG 57.053 40.909 0.00 0.00 30.41 4.44
3909 4012 6.207810 TGCTCTGTTTTCCCAATATACGTTTT 59.792 34.615 0.00 0.00 0.00 2.43
3917 4262 6.930667 TCCCAATATACGTTTTAAGGCTTC 57.069 37.500 1.30 0.00 0.00 3.86
3924 4269 2.032924 ACGTTTTAAGGCTTCTGCACAC 59.967 45.455 1.30 0.00 41.91 3.82
3968 4313 9.376075 CTCTGTGTATTTATGTCATCTCACTTT 57.624 33.333 0.00 0.00 0.00 2.66
4127 5111 3.157087 CCCTTGCTGTCATTTACCTGTT 58.843 45.455 0.00 0.00 0.00 3.16
4144 5129 9.886132 TTTACCTGTTAACATCTTATTCTCTCC 57.114 33.333 9.13 0.00 0.00 3.71
4164 5150 5.351465 TCTCCGTTCTTTGCTTGCTTATTAG 59.649 40.000 0.00 0.00 0.00 1.73
4176 5162 2.956333 TGCTTATTAGCTGAGACGGCTA 59.044 45.455 5.18 8.02 45.07 3.93
4177 5163 3.004839 TGCTTATTAGCTGAGACGGCTAG 59.995 47.826 5.18 4.58 46.99 3.42
4188 5196 4.990257 TGAGACGGCTAGTACATGTTAAC 58.010 43.478 2.30 0.00 0.00 2.01
4226 5234 3.402628 TCAGTTTCTTCCAGTAGTGCC 57.597 47.619 0.00 0.00 0.00 5.01
4240 5248 0.853530 AGTGCCCCTCTGTTTTTCCT 59.146 50.000 0.00 0.00 0.00 3.36
4276 5284 8.723942 AAGTTCATGAAGTATACATTGGAGTC 57.276 34.615 16.08 0.00 0.00 3.36
4361 5369 5.809562 GCTATGCATAGTCACAGGTATGATC 59.190 44.000 29.62 8.61 32.96 2.92
4621 5629 3.750130 CCGCCAATCTTCTTATGGATGAG 59.250 47.826 0.00 0.00 36.27 2.90
4634 5642 1.553248 TGGATGAGAACGGGGTAAGTG 59.447 52.381 0.00 0.00 0.00 3.16
4635 5643 1.653151 GATGAGAACGGGGTAAGTGC 58.347 55.000 0.00 0.00 0.00 4.40
4680 5688 2.166870 TGCATGCATCCTTGGAAATGAC 59.833 45.455 18.46 6.35 0.00 3.06
4732 5740 1.691196 TGCCTTCACTTTTCCAGGTG 58.309 50.000 0.00 0.00 35.06 4.00
4737 5745 3.954258 CCTTCACTTTTCCAGGTGTTCTT 59.046 43.478 0.00 0.00 35.26 2.52
5038 6166 7.389607 GGTCTACTTAGCCAAATCTTGTTTGTA 59.610 37.037 0.55 0.00 0.00 2.41
5065 6196 3.731728 TGGCTGGCCACTGGGATC 61.732 66.667 10.55 0.00 41.89 3.36
5066 6197 3.415087 GGCTGGCCACTGGGATCT 61.415 66.667 0.00 0.00 35.59 2.75
5095 6226 2.838202 TCTTCCTGGTTGGGAGTACATC 59.162 50.000 0.00 0.00 42.32 3.06
5096 6227 2.642171 TCCTGGTTGGGAGTACATCT 57.358 50.000 0.00 0.00 36.20 2.90
5097 6228 2.187958 TCCTGGTTGGGAGTACATCTG 58.812 52.381 0.00 0.00 36.20 2.90
5098 6229 1.909302 CCTGGTTGGGAGTACATCTGT 59.091 52.381 0.00 0.00 0.00 3.41
5099 6230 3.104512 CCTGGTTGGGAGTACATCTGTA 58.895 50.000 0.00 0.00 0.00 2.74
5100 6231 5.359484 TCCTGGTTGGGAGTACATCTGTAC 61.359 50.000 11.66 11.66 42.52 2.90
5101 6232 7.764296 TCCTGGTTGGGAGTACATCTGTACA 62.764 48.000 19.59 0.00 43.51 2.90
5102 6233 8.975861 TCCTGGTTGGGAGTACATCTGTACAT 62.976 46.154 19.59 7.46 43.51 2.29
5153 6284 3.291809 TCGTTTAGTGCGTGATTCAGA 57.708 42.857 0.00 0.00 0.00 3.27
5319 6450 8.317679 AGGTGATTTCTCTATCATTACTATGCC 58.682 37.037 0.00 0.00 36.94 4.40
5322 6453 8.874156 TGATTTCTCTATCATTACTATGCCACT 58.126 33.333 0.00 0.00 29.82 4.00
5500 6634 6.194796 TGAAAAAGAAGAAACCACAGAGTG 57.805 37.500 0.00 0.00 0.00 3.51
5783 6918 3.703001 TGTTCTTCATCTCCAACTCCC 57.297 47.619 0.00 0.00 0.00 4.30
5849 6984 3.732849 CTGGCCTCCAGTTCCCCC 61.733 72.222 3.32 0.00 45.82 5.40
5857 6992 2.045926 CAGTTCCCCCTTGCTCCG 60.046 66.667 0.00 0.00 0.00 4.63
5914 7050 2.996621 GCGTCTATGTGTTGAGAAGCTT 59.003 45.455 0.00 0.00 41.96 3.74
6018 7157 9.797642 ATAACCATAATGCAGAAGTAATCATGA 57.202 29.630 0.00 0.00 0.00 3.07
6028 7167 7.147966 TGCAGAAGTAATCATGATTGCATCTTT 60.148 33.333 29.73 19.51 38.66 2.52
6121 7260 1.600957 CATTCTGAATCGCCTCGCAAT 59.399 47.619 0.00 0.00 0.00 3.56
6162 7301 3.129113 TGAGTTCATTTCGATGGCATTGG 59.871 43.478 14.66 4.11 0.00 3.16
6494 7661 9.090692 GGTCATCAGTGAAATATTTTTGATTGG 57.909 33.333 15.44 9.55 35.80 3.16
6653 7820 8.039603 TGCCACTGTTAGTTCATTATGTTAAG 57.960 34.615 0.00 0.00 0.00 1.85
6898 8069 8.807948 ATATGTTTTGGACTACTGCTATGTTT 57.192 30.769 0.00 0.00 0.00 2.83
6975 8146 0.110823 GTTTTGGACTACTGCGCACG 60.111 55.000 5.66 5.54 0.00 5.34
7061 8232 9.303537 GATCAGTGTTAACATACTCTTAGGAAC 57.696 37.037 12.26 0.00 0.00 3.62
7134 8305 4.646945 TGTTTACCACTTTGCCTGATCAAA 59.353 37.500 0.00 0.00 35.01 2.69
7168 8339 7.604164 CAGTGAAACAGTAACATCCATCTAGTT 59.396 37.037 0.00 0.00 41.43 2.24
7285 8482 2.925578 TTCCAGTACGGACACATACG 57.074 50.000 0.00 0.00 46.36 3.06
7356 8600 9.477484 GTCGTATGTAGTCCATATTGAAATCTT 57.523 33.333 0.00 0.00 38.29 2.40
7588 8843 5.005740 ACTGAGACTTGCTTTAATGCATCA 58.994 37.500 15.91 14.54 42.96 3.07
7594 8849 5.473039 ACTTGCTTTAATGCATCAAGGTTC 58.527 37.500 22.09 8.16 42.96 3.62
7604 8859 3.496884 TGCATCAAGGTTCACGTTCTTAC 59.503 43.478 0.00 0.00 0.00 2.34
7623 8879 1.503542 CAAAGCGATGGTGCAGGTC 59.496 57.895 0.00 0.00 37.31 3.85
7722 8978 3.508840 GGCGCAGGTGTACATGGC 61.509 66.667 10.83 2.45 0.00 4.40
7732 8988 1.093972 TGTACATGGCTTGCAATCCG 58.906 50.000 14.32 3.96 0.00 4.18
7735 8991 0.527565 ACATGGCTTGCAATCCGTTC 59.472 50.000 11.36 0.00 0.00 3.95
7768 9024 1.640428 CGAAGATCAGCGCCTGTTTA 58.360 50.000 2.29 0.00 32.61 2.01
7833 9102 0.109132 CCGGATGGCAACTTTTCAGC 60.109 55.000 0.00 0.00 37.61 4.26
7839 9108 1.608590 TGGCAACTTTTCAGCTGTAGC 59.391 47.619 14.67 3.23 38.54 3.58
7853 9123 1.068250 GTAGCTCCACTCATCGGCC 59.932 63.158 0.00 0.00 0.00 6.13
7854 9124 1.381191 TAGCTCCACTCATCGGCCA 60.381 57.895 2.24 0.00 0.00 5.36
7901 9171 4.581868 TGGTTATTTACTTCCGGGTTCTG 58.418 43.478 0.00 0.00 0.00 3.02
7944 9214 4.456911 AGAATGCTTGTGGACTGTACATTG 59.543 41.667 0.00 0.00 0.00 2.82
7957 9228 9.295825 TGGACTGTACATTGTTTAATCTGATTT 57.704 29.630 8.38 0.00 0.00 2.17
8021 9295 2.159282 GGGCATGCTGTGATTCTTTCAG 60.159 50.000 18.92 0.00 34.17 3.02
8023 9297 3.427233 GGCATGCTGTGATTCTTTCAGTC 60.427 47.826 18.92 0.00 34.17 3.51
8024 9298 3.189910 GCATGCTGTGATTCTTTCAGTCA 59.810 43.478 11.37 0.00 34.17 3.41
8025 9299 4.142447 GCATGCTGTGATTCTTTCAGTCAT 60.142 41.667 11.37 0.00 34.17 3.06
8028 9302 5.250982 TGCTGTGATTCTTTCAGTCATGAT 58.749 37.500 0.00 0.00 34.73 2.45
8030 9304 6.880529 TGCTGTGATTCTTTCAGTCATGATTA 59.119 34.615 0.00 0.00 34.73 1.75
8031 9305 7.555195 TGCTGTGATTCTTTCAGTCATGATTAT 59.445 33.333 0.00 0.00 34.73 1.28
8033 9307 9.327628 CTGTGATTCTTTCAGTCATGATTATCT 57.672 33.333 0.00 0.00 34.73 1.98
8046 9321 6.769822 GTCATGATTATCTTTCCACATCCTGT 59.230 38.462 0.00 0.00 0.00 4.00
8049 9324 5.191522 TGATTATCTTTCCACATCCTGTCCA 59.808 40.000 0.00 0.00 0.00 4.02
8066 9341 3.953612 TGTCCACAGCTTGAATGTTCTTT 59.046 39.130 0.00 0.00 0.00 2.52
8079 9354 4.525912 ATGTTCTTTCATGGCTGGTTTC 57.474 40.909 0.00 0.00 0.00 2.78
8083 9358 0.486879 TTTCATGGCTGGTTTCCCCT 59.513 50.000 0.00 0.00 0.00 4.79
8084 9359 0.486879 TTCATGGCTGGTTTCCCCTT 59.513 50.000 0.00 0.00 0.00 3.95
8085 9360 0.251742 TCATGGCTGGTTTCCCCTTG 60.252 55.000 0.00 0.00 0.00 3.61
8102 9378 3.243704 CCCTTGCAAAATTTCCGTCTTGA 60.244 43.478 0.00 0.00 0.00 3.02
8103 9379 4.367450 CCTTGCAAAATTTCCGTCTTGAA 58.633 39.130 0.00 0.00 0.00 2.69
8104 9380 4.209080 CCTTGCAAAATTTCCGTCTTGAAC 59.791 41.667 0.00 0.00 0.00 3.18
8115 9391 0.586802 GTCTTGAACGGTCTTGGCAC 59.413 55.000 0.33 0.00 0.00 5.01
8116 9392 0.878523 TCTTGAACGGTCTTGGCACG 60.879 55.000 0.33 0.00 0.00 5.34
8117 9393 0.878523 CTTGAACGGTCTTGGCACGA 60.879 55.000 0.33 0.00 0.00 4.35
8118 9394 1.155424 TTGAACGGTCTTGGCACGAC 61.155 55.000 15.16 15.16 0.00 4.34
8119 9395 1.593209 GAACGGTCTTGGCACGACA 60.593 57.895 23.30 0.00 33.11 4.35
8120 9396 1.153329 AACGGTCTTGGCACGACAA 60.153 52.632 23.30 0.00 33.11 3.18
8122 9398 0.319083 ACGGTCTTGGCACGACAATA 59.681 50.000 23.30 0.00 33.11 1.90
8123 9399 0.719465 CGGTCTTGGCACGACAATAC 59.281 55.000 23.30 7.15 33.11 1.89
8124 9400 0.719465 GGTCTTGGCACGACAATACG 59.281 55.000 23.30 0.00 39.31 3.06
8126 9402 0.604073 TCTTGGCACGACAATACGGA 59.396 50.000 0.00 0.00 37.61 4.69
8127 9403 0.999406 CTTGGCACGACAATACGGAG 59.001 55.000 0.00 0.00 37.61 4.63
8129 9405 0.389296 TGGCACGACAATACGGAGTG 60.389 55.000 0.00 0.00 45.73 3.51
8134 9410 3.381045 CACGACAATACGGAGTGCATAT 58.619 45.455 0.00 0.00 45.73 1.78
8138 9414 5.633601 ACGACAATACGGAGTGCATATTATG 59.366 40.000 0.00 0.00 45.73 1.90
8139 9415 5.633601 CGACAATACGGAGTGCATATTATGT 59.366 40.000 0.00 0.00 45.73 2.29
8145 9421 4.214119 ACGGAGTGCATATTATGTTGATGC 59.786 41.667 5.60 0.00 42.51 3.91
8150 9426 6.967135 AGTGCATATTATGTTGATGCTCTTG 58.033 36.000 7.52 0.00 43.99 3.02
8154 9430 7.067251 TGCATATTATGTTGATGCTCTTGTCAA 59.933 33.333 7.52 0.00 45.04 3.18
8155 9431 7.590322 GCATATTATGTTGATGCTCTTGTCAAG 59.410 37.037 6.21 6.21 42.19 3.02
8158 9434 4.818534 TGTTGATGCTCTTGTCAAGTTC 57.181 40.909 12.30 6.25 35.22 3.01
8159 9435 3.248363 TGTTGATGCTCTTGTCAAGTTCG 59.752 43.478 12.30 4.15 35.22 3.95
8162 9438 2.309528 TGCTCTTGTCAAGTTCGTGT 57.690 45.000 12.30 0.00 0.00 4.49
8163 9439 2.201732 TGCTCTTGTCAAGTTCGTGTC 58.798 47.619 12.30 0.00 0.00 3.67
8164 9440 1.527311 GCTCTTGTCAAGTTCGTGTCC 59.473 52.381 12.30 0.00 0.00 4.02
8165 9441 2.803492 GCTCTTGTCAAGTTCGTGTCCT 60.803 50.000 12.30 0.00 0.00 3.85
8166 9442 2.797156 CTCTTGTCAAGTTCGTGTCCTG 59.203 50.000 12.30 0.00 0.00 3.86
8167 9443 1.261619 CTTGTCAAGTTCGTGTCCTGC 59.738 52.381 4.27 0.00 0.00 4.85
8170 9446 1.527311 GTCAAGTTCGTGTCCTGCTTC 59.473 52.381 0.00 0.00 0.00 3.86
8171 9447 0.868406 CAAGTTCGTGTCCTGCTTCC 59.132 55.000 0.00 0.00 0.00 3.46
8172 9448 0.468226 AAGTTCGTGTCCTGCTTCCA 59.532 50.000 0.00 0.00 0.00 3.53
8230 9506 5.047377 ACTCTCCTCTGAACAAAGATGAGTC 60.047 44.000 6.45 0.00 39.00 3.36
8244 9520 1.004440 GAGTCGGAGTTGGCTGCTT 60.004 57.895 0.00 0.00 0.00 3.91
8326 9602 3.975168 TCACTAGGTTACTTTCCTGCC 57.025 47.619 0.00 0.00 36.60 4.85
8369 9645 5.059404 AGAAATGAATAAAGTGGCGTTGG 57.941 39.130 0.00 0.00 0.00 3.77
8370 9646 3.866883 AATGAATAAAGTGGCGTTGGG 57.133 42.857 0.00 0.00 0.00 4.12
8398 9674 3.722123 CGACAACGCTTAGCTTTTACTG 58.278 45.455 1.76 0.00 0.00 2.74
8400 9676 4.455124 GACAACGCTTAGCTTTTACTGTG 58.545 43.478 1.76 0.00 0.00 3.66
8410 9686 1.169661 TTTTACTGTGTGCCTGCGGG 61.170 55.000 7.41 7.41 0.00 6.13
8459 9735 4.602995 GAATGAAACGCACCTGTTTTACA 58.397 39.130 0.00 0.00 41.89 2.41
8464 9740 0.233848 CGCACCTGTTTTACACCGTC 59.766 55.000 0.00 0.00 0.00 4.79
8465 9741 1.589803 GCACCTGTTTTACACCGTCT 58.410 50.000 0.00 0.00 0.00 4.18
8476 9755 2.169832 ACACCGTCTGTTTGGATCAG 57.830 50.000 0.00 0.00 0.00 2.90
8541 9820 4.817733 GCGTTTGCTTCTTTTTACAAACC 58.182 39.130 10.77 2.40 45.66 3.27
8589 9868 6.418057 AAAAGAAACTAATGGTGGCAATGA 57.582 33.333 0.00 0.00 0.00 2.57
8590 9869 6.610075 AAAGAAACTAATGGTGGCAATGAT 57.390 33.333 0.00 0.00 0.00 2.45
8591 9870 5.587388 AGAAACTAATGGTGGCAATGATG 57.413 39.130 0.00 0.00 0.00 3.07
8592 9871 5.018809 AGAAACTAATGGTGGCAATGATGT 58.981 37.500 0.00 0.00 0.00 3.06
8593 9872 4.724074 AACTAATGGTGGCAATGATGTG 57.276 40.909 0.00 0.00 0.00 3.21
8594 9873 3.700538 ACTAATGGTGGCAATGATGTGT 58.299 40.909 0.00 0.00 0.00 3.72
8650 9945 6.072286 ACAAAAAGGACATACAAGATCTGCTG 60.072 38.462 0.00 0.00 0.00 4.41
8664 9959 1.536766 TCTGCTGCTTGTTGGATTTCG 59.463 47.619 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.094957 CACTCACTTCTCTCGTTCTCCC 60.095 54.545 0.00 0.00 0.00 4.30
1 2 2.094957 CCACTCACTTCTCTCGTTCTCC 60.095 54.545 0.00 0.00 0.00 3.71
4 5 2.554893 ACTCCACTCACTTCTCTCGTTC 59.445 50.000 0.00 0.00 0.00 3.95
5 6 2.294791 CACTCCACTCACTTCTCTCGTT 59.705 50.000 0.00 0.00 0.00 3.85
8 9 1.402194 CGCACTCCACTCACTTCTCTC 60.402 57.143 0.00 0.00 0.00 3.20
9 10 0.600557 CGCACTCCACTCACTTCTCT 59.399 55.000 0.00 0.00 0.00 3.10
10 11 0.389166 CCGCACTCCACTCACTTCTC 60.389 60.000 0.00 0.00 0.00 2.87
12 13 0.249911 AACCGCACTCCACTCACTTC 60.250 55.000 0.00 0.00 0.00 3.01
14 15 0.532862 CAAACCGCACTCCACTCACT 60.533 55.000 0.00 0.00 0.00 3.41
15 16 0.531974 TCAAACCGCACTCCACTCAC 60.532 55.000 0.00 0.00 0.00 3.51
16 17 0.249868 CTCAAACCGCACTCCACTCA 60.250 55.000 0.00 0.00 0.00 3.41
17 18 0.033504 TCTCAAACCGCACTCCACTC 59.966 55.000 0.00 0.00 0.00 3.51
18 19 0.249911 GTCTCAAACCGCACTCCACT 60.250 55.000 0.00 0.00 0.00 4.00
19 20 0.249911 AGTCTCAAACCGCACTCCAC 60.250 55.000 0.00 0.00 0.00 4.02
20 21 1.272490 CTAGTCTCAAACCGCACTCCA 59.728 52.381 0.00 0.00 0.00 3.86
21 22 1.404315 CCTAGTCTCAAACCGCACTCC 60.404 57.143 0.00 0.00 0.00 3.85
22 23 1.544691 TCCTAGTCTCAAACCGCACTC 59.455 52.381 0.00 0.00 0.00 3.51
23 24 1.629043 TCCTAGTCTCAAACCGCACT 58.371 50.000 0.00 0.00 0.00 4.40
24 25 2.674796 ATCCTAGTCTCAAACCGCAC 57.325 50.000 0.00 0.00 0.00 5.34
25 26 3.596214 GAAATCCTAGTCTCAAACCGCA 58.404 45.455 0.00 0.00 0.00 5.69
26 27 2.603560 CGAAATCCTAGTCTCAAACCGC 59.396 50.000 0.00 0.00 0.00 5.68
27 28 3.187700 CCGAAATCCTAGTCTCAAACCG 58.812 50.000 0.00 0.00 0.00 4.44
28 29 4.182339 GACCGAAATCCTAGTCTCAAACC 58.818 47.826 0.00 0.00 0.00 3.27
29 30 3.858238 CGACCGAAATCCTAGTCTCAAAC 59.142 47.826 0.00 0.00 0.00 2.93
30 31 3.119245 CCGACCGAAATCCTAGTCTCAAA 60.119 47.826 0.00 0.00 0.00 2.69
31 32 2.426024 CCGACCGAAATCCTAGTCTCAA 59.574 50.000 0.00 0.00 0.00 3.02
32 33 2.022195 CCGACCGAAATCCTAGTCTCA 58.978 52.381 0.00 0.00 0.00 3.27
33 34 2.295885 TCCGACCGAAATCCTAGTCTC 58.704 52.381 0.00 0.00 0.00 3.36
34 35 2.431954 TCCGACCGAAATCCTAGTCT 57.568 50.000 0.00 0.00 0.00 3.24
35 36 3.729862 ATTCCGACCGAAATCCTAGTC 57.270 47.619 0.00 0.00 33.08 2.59
36 37 4.648307 AGTAATTCCGACCGAAATCCTAGT 59.352 41.667 0.00 0.00 33.08 2.57
37 38 5.197682 AGTAATTCCGACCGAAATCCTAG 57.802 43.478 0.00 0.00 33.08 3.02
38 39 5.603170 AAGTAATTCCGACCGAAATCCTA 57.397 39.130 0.00 0.00 33.08 2.94
39 40 4.482952 AAGTAATTCCGACCGAAATCCT 57.517 40.909 0.00 0.00 33.08 3.24
40 41 5.556355 AAAAGTAATTCCGACCGAAATCC 57.444 39.130 0.00 0.00 33.08 3.01
41 42 6.304683 CACAAAAAGTAATTCCGACCGAAATC 59.695 38.462 0.00 0.00 33.08 2.17
42 43 6.146898 CACAAAAAGTAATTCCGACCGAAAT 58.853 36.000 0.00 0.00 33.08 2.17
43 44 5.505985 CCACAAAAAGTAATTCCGACCGAAA 60.506 40.000 0.00 0.00 33.08 3.46
44 45 4.023878 CCACAAAAAGTAATTCCGACCGAA 60.024 41.667 0.00 0.00 34.14 4.30
45 46 3.499157 CCACAAAAAGTAATTCCGACCGA 59.501 43.478 0.00 0.00 0.00 4.69
46 47 3.365565 CCCACAAAAAGTAATTCCGACCG 60.366 47.826 0.00 0.00 0.00 4.79
47 48 3.057104 CCCCACAAAAAGTAATTCCGACC 60.057 47.826 0.00 0.00 0.00 4.79
48 49 3.057104 CCCCCACAAAAAGTAATTCCGAC 60.057 47.826 0.00 0.00 0.00 4.79
49 50 3.158676 CCCCCACAAAAAGTAATTCCGA 58.841 45.455 0.00 0.00 0.00 4.55
50 51 3.158676 TCCCCCACAAAAAGTAATTCCG 58.841 45.455 0.00 0.00 0.00 4.30
51 52 3.513912 CCTCCCCCACAAAAAGTAATTCC 59.486 47.826 0.00 0.00 0.00 3.01
52 53 4.412843 TCCTCCCCCACAAAAAGTAATTC 58.587 43.478 0.00 0.00 0.00 2.17
53 54 4.479156 TCCTCCCCCACAAAAAGTAATT 57.521 40.909 0.00 0.00 0.00 1.40
54 55 4.352893 CATCCTCCCCCACAAAAAGTAAT 58.647 43.478 0.00 0.00 0.00 1.89
55 56 3.501385 CCATCCTCCCCCACAAAAAGTAA 60.501 47.826 0.00 0.00 0.00 2.24
56 57 2.042433 CCATCCTCCCCCACAAAAAGTA 59.958 50.000 0.00 0.00 0.00 2.24
57 58 1.203174 CCATCCTCCCCCACAAAAAGT 60.203 52.381 0.00 0.00 0.00 2.66
58 59 1.203174 ACCATCCTCCCCCACAAAAAG 60.203 52.381 0.00 0.00 0.00 2.27
59 60 0.863956 ACCATCCTCCCCCACAAAAA 59.136 50.000 0.00 0.00 0.00 1.94
60 61 0.114168 CACCATCCTCCCCCACAAAA 59.886 55.000 0.00 0.00 0.00 2.44
61 62 1.773635 CACCATCCTCCCCCACAAA 59.226 57.895 0.00 0.00 0.00 2.83
62 63 2.237965 CCACCATCCTCCCCCACAA 61.238 63.158 0.00 0.00 0.00 3.33
63 64 2.613696 CCACCATCCTCCCCCACA 60.614 66.667 0.00 0.00 0.00 4.17
64 65 3.420482 CCCACCATCCTCCCCCAC 61.420 72.222 0.00 0.00 0.00 4.61
109 110 4.838486 GGACGAGCTCAGACGCCG 62.838 72.222 15.40 0.21 0.00 6.46
110 111 4.500116 GGGACGAGCTCAGACGCC 62.500 72.222 15.40 6.65 0.00 5.68
111 112 2.945398 GATGGGACGAGCTCAGACGC 62.945 65.000 15.40 14.50 0.00 5.19
112 113 1.064946 GATGGGACGAGCTCAGACG 59.935 63.158 15.40 2.30 0.00 4.18
113 114 1.040339 AGGATGGGACGAGCTCAGAC 61.040 60.000 15.40 6.98 0.00 3.51
114 115 0.753479 GAGGATGGGACGAGCTCAGA 60.753 60.000 15.40 0.00 0.00 3.27
115 116 1.739049 GAGGATGGGACGAGCTCAG 59.261 63.158 15.40 9.21 0.00 3.35
116 117 1.758514 GGAGGATGGGACGAGCTCA 60.759 63.158 15.40 0.00 0.00 4.26
117 118 2.503382 GGGAGGATGGGACGAGCTC 61.503 68.421 2.73 2.73 0.00 4.09
118 119 2.444895 GGGAGGATGGGACGAGCT 60.445 66.667 0.00 0.00 0.00 4.09
119 120 3.551407 GGGGAGGATGGGACGAGC 61.551 72.222 0.00 0.00 0.00 5.03
120 121 0.178932 TATGGGGAGGATGGGACGAG 60.179 60.000 0.00 0.00 0.00 4.18
121 122 0.471211 GTATGGGGAGGATGGGACGA 60.471 60.000 0.00 0.00 0.00 4.20
122 123 0.762842 TGTATGGGGAGGATGGGACG 60.763 60.000 0.00 0.00 0.00 4.79
123 124 1.421646 CTTGTATGGGGAGGATGGGAC 59.578 57.143 0.00 0.00 0.00 4.46
124 125 1.296832 TCTTGTATGGGGAGGATGGGA 59.703 52.381 0.00 0.00 0.00 4.37
125 126 1.819753 TCTTGTATGGGGAGGATGGG 58.180 55.000 0.00 0.00 0.00 4.00
126 127 4.080129 CCATATCTTGTATGGGGAGGATGG 60.080 50.000 6.25 0.00 40.50 3.51
127 128 5.108187 CCATATCTTGTATGGGGAGGATG 57.892 47.826 6.25 0.00 40.50 3.51
135 136 4.581309 ATCCAGCCCATATCTTGTATGG 57.419 45.455 7.04 7.04 43.08 2.74
136 137 6.060136 CCATATCCAGCCCATATCTTGTATG 58.940 44.000 0.00 0.00 0.00 2.39
137 138 5.133322 CCCATATCCAGCCCATATCTTGTAT 59.867 44.000 0.00 0.00 0.00 2.29
138 139 4.474651 CCCATATCCAGCCCATATCTTGTA 59.525 45.833 0.00 0.00 0.00 2.41
139 140 3.267812 CCCATATCCAGCCCATATCTTGT 59.732 47.826 0.00 0.00 0.00 3.16
140 141 3.372349 CCCCATATCCAGCCCATATCTTG 60.372 52.174 0.00 0.00 0.00 3.02
141 142 2.854967 CCCCATATCCAGCCCATATCTT 59.145 50.000 0.00 0.00 0.00 2.40
142 143 2.226249 ACCCCATATCCAGCCCATATCT 60.226 50.000 0.00 0.00 0.00 1.98
143 144 2.208872 ACCCCATATCCAGCCCATATC 58.791 52.381 0.00 0.00 0.00 1.63
144 145 2.383521 ACCCCATATCCAGCCCATAT 57.616 50.000 0.00 0.00 0.00 1.78
145 146 2.147946 AACCCCATATCCAGCCCATA 57.852 50.000 0.00 0.00 0.00 2.74
146 147 1.710809 GTAACCCCATATCCAGCCCAT 59.289 52.381 0.00 0.00 0.00 4.00
147 148 1.145571 GTAACCCCATATCCAGCCCA 58.854 55.000 0.00 0.00 0.00 5.36
148 149 0.404426 GGTAACCCCATATCCAGCCC 59.596 60.000 0.00 0.00 0.00 5.19
149 150 1.073923 CTGGTAACCCCATATCCAGCC 59.926 57.143 0.00 0.00 44.15 4.85
150 151 2.054799 TCTGGTAACCCCATATCCAGC 58.945 52.381 0.00 0.00 44.15 4.85
151 152 3.045634 TGTCTGGTAACCCCATATCCAG 58.954 50.000 0.00 0.00 44.15 3.86
152 153 3.045634 CTGTCTGGTAACCCCATATCCA 58.954 50.000 0.00 0.00 44.15 3.41
153 154 3.071167 GTCTGTCTGGTAACCCCATATCC 59.929 52.174 0.00 0.00 44.15 2.59
154 155 3.071167 GGTCTGTCTGGTAACCCCATATC 59.929 52.174 0.00 0.00 44.15 1.63
155 156 3.046374 GGTCTGTCTGGTAACCCCATAT 58.954 50.000 0.00 0.00 44.15 1.78
156 157 2.225675 TGGTCTGTCTGGTAACCCCATA 60.226 50.000 0.00 0.00 44.15 2.74
157 158 1.286248 GGTCTGTCTGGTAACCCCAT 58.714 55.000 0.00 0.00 44.15 4.00
158 159 0.104882 TGGTCTGTCTGGTAACCCCA 60.105 55.000 0.00 0.00 42.51 4.96
159 160 1.061546 TTGGTCTGTCTGGTAACCCC 58.938 55.000 0.00 0.00 0.00 4.95
160 161 2.158726 TGTTTGGTCTGTCTGGTAACCC 60.159 50.000 0.00 0.00 0.00 4.11
161 162 3.202829 TGTTTGGTCTGTCTGGTAACC 57.797 47.619 0.00 0.00 0.00 2.85
162 163 5.519722 CAAATGTTTGGTCTGTCTGGTAAC 58.480 41.667 0.00 0.00 34.59 2.50
163 164 5.766150 CAAATGTTTGGTCTGTCTGGTAA 57.234 39.130 0.00 0.00 34.59 2.85
176 177 2.101582 TCGAACCCAACCCAAATGTTTG 59.898 45.455 0.00 0.00 37.90 2.93
177 178 2.364002 CTCGAACCCAACCCAAATGTTT 59.636 45.455 0.00 0.00 0.00 2.83
178 179 1.960689 CTCGAACCCAACCCAAATGTT 59.039 47.619 0.00 0.00 0.00 2.71
179 180 1.144093 TCTCGAACCCAACCCAAATGT 59.856 47.619 0.00 0.00 0.00 2.71
180 181 1.904287 TCTCGAACCCAACCCAAATG 58.096 50.000 0.00 0.00 0.00 2.32
181 182 2.514803 CTTCTCGAACCCAACCCAAAT 58.485 47.619 0.00 0.00 0.00 2.32
182 183 1.477923 CCTTCTCGAACCCAACCCAAA 60.478 52.381 0.00 0.00 0.00 3.28
183 184 0.109723 CCTTCTCGAACCCAACCCAA 59.890 55.000 0.00 0.00 0.00 4.12
184 185 1.758592 CCTTCTCGAACCCAACCCA 59.241 57.895 0.00 0.00 0.00 4.51
185 186 1.002502 CCCTTCTCGAACCCAACCC 60.003 63.158 0.00 0.00 0.00 4.11
186 187 0.605589 CACCCTTCTCGAACCCAACC 60.606 60.000 0.00 0.00 0.00 3.77
187 188 0.605589 CCACCCTTCTCGAACCCAAC 60.606 60.000 0.00 0.00 0.00 3.77
188 189 1.057851 ACCACCCTTCTCGAACCCAA 61.058 55.000 0.00 0.00 0.00 4.12
189 190 1.057851 AACCACCCTTCTCGAACCCA 61.058 55.000 0.00 0.00 0.00 4.51
190 191 0.605589 CAACCACCCTTCTCGAACCC 60.606 60.000 0.00 0.00 0.00 4.11
191 192 0.605589 CCAACCACCCTTCTCGAACC 60.606 60.000 0.00 0.00 0.00 3.62
192 193 0.605589 CCCAACCACCCTTCTCGAAC 60.606 60.000 0.00 0.00 0.00 3.95
193 194 1.057851 ACCCAACCACCCTTCTCGAA 61.058 55.000 0.00 0.00 0.00 3.71
194 195 1.460689 ACCCAACCACCCTTCTCGA 60.461 57.895 0.00 0.00 0.00 4.04
195 196 1.302511 CACCCAACCACCCTTCTCG 60.303 63.158 0.00 0.00 0.00 4.04
196 197 0.250770 GTCACCCAACCACCCTTCTC 60.251 60.000 0.00 0.00 0.00 2.87
197 198 1.716028 GGTCACCCAACCACCCTTCT 61.716 60.000 0.00 0.00 39.27 2.85
198 199 1.228459 GGTCACCCAACCACCCTTC 60.228 63.158 0.00 0.00 39.27 3.46
199 200 2.009882 TGGTCACCCAACCACCCTT 61.010 57.895 0.00 0.00 44.40 3.95
200 201 2.369015 TGGTCACCCAACCACCCT 60.369 61.111 0.00 0.00 44.40 4.34
208 209 1.546773 CGGAGGAAATTTGGTCACCCA 60.547 52.381 0.00 0.00 39.65 4.51
209 210 1.173913 CGGAGGAAATTTGGTCACCC 58.826 55.000 0.00 0.00 0.00 4.61
210 211 2.084546 CTCGGAGGAAATTTGGTCACC 58.915 52.381 0.00 0.00 0.00 4.02
211 212 1.468914 GCTCGGAGGAAATTTGGTCAC 59.531 52.381 7.20 0.00 0.00 3.67
212 213 1.073125 TGCTCGGAGGAAATTTGGTCA 59.927 47.619 7.20 0.00 0.00 4.02
213 214 1.468914 GTGCTCGGAGGAAATTTGGTC 59.531 52.381 7.20 0.00 0.00 4.02
214 215 1.073923 AGTGCTCGGAGGAAATTTGGT 59.926 47.619 7.20 0.00 0.00 3.67
215 216 1.826385 AGTGCTCGGAGGAAATTTGG 58.174 50.000 7.20 0.00 0.00 3.28
216 217 3.127030 GGTTAGTGCTCGGAGGAAATTTG 59.873 47.826 7.20 0.00 0.00 2.32
217 218 3.344515 GGTTAGTGCTCGGAGGAAATTT 58.655 45.455 7.20 0.00 0.00 1.82
218 219 2.677037 CGGTTAGTGCTCGGAGGAAATT 60.677 50.000 7.20 0.00 0.00 1.82
219 220 1.134788 CGGTTAGTGCTCGGAGGAAAT 60.135 52.381 7.20 0.00 0.00 2.17
220 221 0.245539 CGGTTAGTGCTCGGAGGAAA 59.754 55.000 7.20 0.00 0.00 3.13
221 222 1.601419 CCGGTTAGTGCTCGGAGGAA 61.601 60.000 7.20 0.00 45.96 3.36
222 223 2.050350 CCGGTTAGTGCTCGGAGGA 61.050 63.158 7.20 0.00 45.96 3.71
223 224 2.494918 CCGGTTAGTGCTCGGAGG 59.505 66.667 7.20 0.00 45.96 4.30
224 225 1.033746 TACCCGGTTAGTGCTCGGAG 61.034 60.000 0.00 0.00 45.96 4.63
225 226 1.001020 TACCCGGTTAGTGCTCGGA 60.001 57.895 0.00 0.00 45.96 4.55
226 227 1.436336 CTACCCGGTTAGTGCTCGG 59.564 63.158 0.00 0.00 43.05 4.63
227 228 1.226888 GCTACCCGGTTAGTGCTCG 60.227 63.158 7.95 0.00 0.00 5.03
228 229 1.143401 GGCTACCCGGTTAGTGCTC 59.857 63.158 7.95 0.00 0.00 4.26
229 230 2.364780 GGGCTACCCGGTTAGTGCT 61.365 63.158 7.95 0.00 32.13 4.40
230 231 2.188731 GGGCTACCCGGTTAGTGC 59.811 66.667 7.95 1.02 32.13 4.40
251 252 3.846506 TAACCCACCCAAACGCCCG 62.847 63.158 0.00 0.00 0.00 6.13
252 253 1.974875 CTAACCCACCCAAACGCCC 60.975 63.158 0.00 0.00 0.00 6.13
253 254 1.974875 CCTAACCCACCCAAACGCC 60.975 63.158 0.00 0.00 0.00 5.68
254 255 1.974875 CCCTAACCCACCCAAACGC 60.975 63.158 0.00 0.00 0.00 4.84
255 256 0.691904 TACCCTAACCCACCCAAACG 59.308 55.000 0.00 0.00 0.00 3.60
256 257 1.706866 AGTACCCTAACCCACCCAAAC 59.293 52.381 0.00 0.00 0.00 2.93
257 258 1.987368 GAGTACCCTAACCCACCCAAA 59.013 52.381 0.00 0.00 0.00 3.28
258 259 1.660242 GAGTACCCTAACCCACCCAA 58.340 55.000 0.00 0.00 0.00 4.12
259 260 0.252835 GGAGTACCCTAACCCACCCA 60.253 60.000 0.00 0.00 0.00 4.51
260 261 2.612760 GGAGTACCCTAACCCACCC 58.387 63.158 0.00 0.00 0.00 4.61
271 272 2.230750 GAGCATATACACCGGGAGTACC 59.769 54.545 6.32 0.00 0.00 3.34
272 273 3.155501 AGAGCATATACACCGGGAGTAC 58.844 50.000 6.32 0.00 0.00 2.73
273 274 3.520691 AGAGCATATACACCGGGAGTA 57.479 47.619 6.32 9.13 0.00 2.59
274 275 2.383442 AGAGCATATACACCGGGAGT 57.617 50.000 6.32 6.74 0.00 3.85
275 276 4.748892 CATTAGAGCATATACACCGGGAG 58.251 47.826 6.32 0.00 0.00 4.30
276 277 3.056107 GCATTAGAGCATATACACCGGGA 60.056 47.826 6.32 0.00 0.00 5.14
277 278 3.055819 AGCATTAGAGCATATACACCGGG 60.056 47.826 6.32 0.00 36.85 5.73
278 279 4.193826 AGCATTAGAGCATATACACCGG 57.806 45.455 0.00 0.00 36.85 5.28
279 280 5.230182 TGAAGCATTAGAGCATATACACCG 58.770 41.667 0.00 0.00 36.85 4.94
280 281 7.496529 TTTGAAGCATTAGAGCATATACACC 57.503 36.000 0.00 0.00 36.85 4.16
281 282 8.616076 AGTTTTGAAGCATTAGAGCATATACAC 58.384 33.333 0.00 0.00 36.85 2.90
282 283 8.737168 AGTTTTGAAGCATTAGAGCATATACA 57.263 30.769 0.00 0.00 36.85 2.29
285 286 9.618890 TCTTAGTTTTGAAGCATTAGAGCATAT 57.381 29.630 0.00 0.00 36.85 1.78
286 287 9.448438 TTCTTAGTTTTGAAGCATTAGAGCATA 57.552 29.630 0.00 0.00 36.85 3.14
287 288 7.928307 TCTTAGTTTTGAAGCATTAGAGCAT 57.072 32.000 0.00 0.00 36.85 3.79
288 289 7.744087 TTCTTAGTTTTGAAGCATTAGAGCA 57.256 32.000 0.00 0.00 36.85 4.26
289 290 7.219726 GCATTCTTAGTTTTGAAGCATTAGAGC 59.780 37.037 0.00 0.00 0.00 4.09
290 291 8.457261 AGCATTCTTAGTTTTGAAGCATTAGAG 58.543 33.333 0.00 0.00 0.00 2.43
291 292 8.340618 AGCATTCTTAGTTTTGAAGCATTAGA 57.659 30.769 0.00 0.00 0.00 2.10
292 293 8.976986 AAGCATTCTTAGTTTTGAAGCATTAG 57.023 30.769 0.00 0.00 0.00 1.73
294 295 8.976986 CTAAGCATTCTTAGTTTTGAAGCATT 57.023 30.769 4.16 0.00 44.20 3.56
307 308 4.730949 ACACGCCTACTAAGCATTCTTA 57.269 40.909 0.00 0.00 33.85 2.10
308 309 3.611766 ACACGCCTACTAAGCATTCTT 57.388 42.857 0.00 0.00 36.35 2.52
309 310 3.611766 AACACGCCTACTAAGCATTCT 57.388 42.857 0.00 0.00 0.00 2.40
310 311 5.789710 TTTAACACGCCTACTAAGCATTC 57.210 39.130 0.00 0.00 0.00 2.67
311 312 6.563222 TTTTTAACACGCCTACTAAGCATT 57.437 33.333 0.00 0.00 0.00 3.56
333 334 3.279434 CGGCCTACTAAGCATCCTTTTT 58.721 45.455 0.00 0.00 32.47 1.94
334 335 2.238898 ACGGCCTACTAAGCATCCTTTT 59.761 45.455 0.00 0.00 32.47 2.27
335 336 1.838077 ACGGCCTACTAAGCATCCTTT 59.162 47.619 0.00 0.00 32.47 3.11
336 337 1.413077 GACGGCCTACTAAGCATCCTT 59.587 52.381 0.00 0.00 35.05 3.36
337 338 1.041437 GACGGCCTACTAAGCATCCT 58.959 55.000 0.00 0.00 0.00 3.24
338 339 0.033642 GGACGGCCTACTAAGCATCC 59.966 60.000 0.00 0.00 32.05 3.51
339 340 0.318784 CGGACGGCCTACTAAGCATC 60.319 60.000 5.33 0.00 0.00 3.91
340 341 1.740285 CGGACGGCCTACTAAGCAT 59.260 57.895 5.33 0.00 0.00 3.79
341 342 2.420568 CCGGACGGCCTACTAAGCA 61.421 63.158 5.33 0.00 0.00 3.91
342 343 2.416260 CCGGACGGCCTACTAAGC 59.584 66.667 5.33 0.00 0.00 3.09
388 389 6.921307 GTCGGTTTGAATTTGGTTATTGTCTT 59.079 34.615 0.00 0.00 0.00 3.01
390 391 5.631929 GGTCGGTTTGAATTTGGTTATTGTC 59.368 40.000 0.00 0.00 0.00 3.18
391 392 5.534407 GGTCGGTTTGAATTTGGTTATTGT 58.466 37.500 0.00 0.00 0.00 2.71
394 395 3.822167 ACGGTCGGTTTGAATTTGGTTAT 59.178 39.130 0.00 0.00 0.00 1.89
395 396 3.212685 ACGGTCGGTTTGAATTTGGTTA 58.787 40.909 0.00 0.00 0.00 2.85
398 399 1.068816 GGACGGTCGGTTTGAATTTGG 60.069 52.381 1.43 0.00 0.00 3.28
415 416 2.667473 AGTGGTAGCATACGTTGGAC 57.333 50.000 0.00 0.00 44.28 4.02
416 417 3.623703 TCTAGTGGTAGCATACGTTGGA 58.376 45.455 0.00 0.00 44.28 3.53
418 419 3.066900 AGCTCTAGTGGTAGCATACGTTG 59.933 47.826 0.00 0.00 44.28 4.10
419 420 3.288964 AGCTCTAGTGGTAGCATACGTT 58.711 45.455 0.00 0.00 44.28 3.99
422 423 5.048573 GGAGTAAGCTCTAGTGGTAGCATAC 60.049 48.000 0.00 7.94 41.10 2.39
423 424 5.071370 GGAGTAAGCTCTAGTGGTAGCATA 58.929 45.833 0.00 0.00 41.32 3.14
424 425 3.892588 GGAGTAAGCTCTAGTGGTAGCAT 59.107 47.826 0.00 0.00 41.32 3.79
425 426 3.288964 GGAGTAAGCTCTAGTGGTAGCA 58.711 50.000 4.19 0.00 41.32 3.49
426 427 3.288964 TGGAGTAAGCTCTAGTGGTAGC 58.711 50.000 0.00 0.00 41.38 3.58
427 428 4.951094 ACTTGGAGTAAGCTCTAGTGGTAG 59.049 45.833 0.00 0.00 41.38 3.18
428 429 4.931914 ACTTGGAGTAAGCTCTAGTGGTA 58.068 43.478 0.00 0.00 41.38 3.25
429 430 3.780626 ACTTGGAGTAAGCTCTAGTGGT 58.219 45.455 0.00 0.00 41.38 4.16
453 454 2.672478 CGGATCTTGGACGGATATCTGC 60.672 54.545 11.66 4.63 0.00 4.26
472 473 2.031683 GCTGAATTGGGTTATTCGTCGG 59.968 50.000 0.00 0.00 37.34 4.79
509 510 1.076850 TGTATGTGCCTGCCATGGG 60.077 57.895 15.13 0.00 0.00 4.00
514 515 1.755179 AATCACTGTATGTGCCTGCC 58.245 50.000 0.00 0.00 45.81 4.85
515 516 4.963276 TTTAATCACTGTATGTGCCTGC 57.037 40.909 0.00 0.00 45.81 4.85
562 563 3.514309 ACACTGTGGTTGGAGTAGGATAC 59.486 47.826 13.09 0.00 43.47 2.24
574 575 3.209097 GTGGCGCACACTGTGGTT 61.209 61.111 10.83 0.00 46.72 3.67
597 599 2.514013 CGGTGCATCGGTACTTCGC 61.514 63.158 12.68 0.00 0.00 4.70
624 631 1.367471 GCTTTGGTCTGGGGTTTGC 59.633 57.895 0.00 0.00 0.00 3.68
625 632 1.805428 CGGCTTTGGTCTGGGGTTTG 61.805 60.000 0.00 0.00 0.00 2.93
626 633 1.530655 CGGCTTTGGTCTGGGGTTT 60.531 57.895 0.00 0.00 0.00 3.27
627 634 2.002018 TTCGGCTTTGGTCTGGGGTT 62.002 55.000 0.00 0.00 0.00 4.11
628 635 1.789576 ATTCGGCTTTGGTCTGGGGT 61.790 55.000 0.00 0.00 0.00 4.95
629 636 0.611896 AATTCGGCTTTGGTCTGGGG 60.612 55.000 0.00 0.00 0.00 4.96
631 638 0.527565 CCAATTCGGCTTTGGTCTGG 59.472 55.000 4.40 0.00 39.05 3.86
663 681 1.336821 CGCAAATAAAACAGCGCGC 59.663 52.632 26.66 26.66 43.80 6.86
668 686 2.723618 CGGTCGGTCGCAAATAAAACAG 60.724 50.000 0.00 0.00 0.00 3.16
669 687 1.194997 CGGTCGGTCGCAAATAAAACA 59.805 47.619 0.00 0.00 0.00 2.83
670 688 1.460359 TCGGTCGGTCGCAAATAAAAC 59.540 47.619 0.00 0.00 0.00 2.43
672 690 1.070038 GTCGGTCGGTCGCAAATAAA 58.930 50.000 0.00 0.00 0.00 1.40
673 691 0.737019 GGTCGGTCGGTCGCAAATAA 60.737 55.000 0.00 0.00 0.00 1.40
699 717 1.560505 ATGGGGTCAAATTCACCTGC 58.439 50.000 6.51 0.00 33.96 4.85
703 721 4.890158 AAGGAAATGGGGTCAAATTCAC 57.110 40.909 0.00 0.00 0.00 3.18
714 732 8.955388 TGAAAAAGAAAAAGAAAAGGAAATGGG 58.045 29.630 0.00 0.00 0.00 4.00
754 775 5.303333 TGCGACCCCTTTTCTTTTCTTTTAT 59.697 36.000 0.00 0.00 0.00 1.40
755 776 4.645588 TGCGACCCCTTTTCTTTTCTTTTA 59.354 37.500 0.00 0.00 0.00 1.52
758 779 2.361119 GTGCGACCCCTTTTCTTTTCTT 59.639 45.455 0.00 0.00 0.00 2.52
760 781 1.679153 TGTGCGACCCCTTTTCTTTTC 59.321 47.619 0.00 0.00 0.00 2.29
763 784 0.182775 AGTGTGCGACCCCTTTTCTT 59.817 50.000 0.00 0.00 0.00 2.52
765 786 1.566018 CGAGTGTGCGACCCCTTTTC 61.566 60.000 0.00 0.00 0.00 2.29
803 825 3.062369 GTGGTTTTATATACGTGCGTGCA 59.938 43.478 7.55 0.00 0.00 4.57
942 996 4.806339 AGGGAGGGAGGGGAAGCG 62.806 72.222 0.00 0.00 0.00 4.68
961 1015 1.589196 GGTCTCTCGCGGATTTCGG 60.589 63.158 6.13 0.00 39.69 4.30
1333 1422 1.303309 CCAACCCGAGAATCATCAGC 58.697 55.000 0.00 0.00 33.17 4.26
1334 1423 1.303309 GCCAACCCGAGAATCATCAG 58.697 55.000 0.00 0.00 33.17 2.90
1347 1436 1.299544 CAAACCCGAAACGCCAACC 60.300 57.895 0.00 0.00 0.00 3.77
1348 1438 0.868177 CACAAACCCGAAACGCCAAC 60.868 55.000 0.00 0.00 0.00 3.77
1495 1585 1.670674 CCGTCGGATGGAAGAACGAAA 60.671 52.381 10.90 0.00 37.08 3.46
1503 1593 1.956629 GAGAAGCCCGTCGGATGGAA 61.957 60.000 17.90 0.00 0.00 3.53
1540 1630 5.357257 TCCGAATCACATTCCTAAACTAGC 58.643 41.667 0.00 0.00 35.89 3.42
1555 1645 1.960040 ATCAGTGGCGCTCCGAATCA 61.960 55.000 7.64 0.00 34.14 2.57
1580 1670 1.333931 TCATCTACAGCGGTCGATCAC 59.666 52.381 0.99 0.00 27.77 3.06
1581 1671 1.333931 GTCATCTACAGCGGTCGATCA 59.666 52.381 0.99 0.00 27.77 2.92
1582 1672 1.604755 AGTCATCTACAGCGGTCGATC 59.395 52.381 0.99 0.00 27.77 3.69
1583 1673 1.604755 GAGTCATCTACAGCGGTCGAT 59.395 52.381 0.00 0.00 30.18 3.59
1584 1674 1.015109 GAGTCATCTACAGCGGTCGA 58.985 55.000 0.00 0.00 0.00 4.20
1615 1705 6.208797 TCAGACCATATAATACAACTCCGGAG 59.791 42.308 30.11 30.11 0.00 4.63
1663 1753 4.463879 CCCACCGAGAGCAGCCAG 62.464 72.222 0.00 0.00 0.00 4.85
1670 1760 3.717294 CCCCCAACCCACCGAGAG 61.717 72.222 0.00 0.00 0.00 3.20
1744 1835 3.930336 TGAGTGTCATTGACTAGGCTTG 58.070 45.455 17.26 0.00 33.15 4.01
1787 1878 1.475751 CCCCATTCTTCTGGACGATGG 60.476 57.143 0.00 0.00 38.69 3.51
1840 1932 8.474025 AGCCGATTCCTTGATAGATAAGAATAG 58.526 37.037 0.00 0.00 0.00 1.73
1862 1954 2.309528 TACTAAGTGCCAATGAGCCG 57.690 50.000 0.00 0.00 0.00 5.52
1887 1979 1.009829 CAACTGCTGTATCCGGAAGC 58.990 55.000 17.97 17.97 37.46 3.86
1988 2080 2.441750 AGACCACTCAAAAGCCCTAACA 59.558 45.455 0.00 0.00 0.00 2.41
2013 2105 1.502231 ACTTGCTGACAGTGTTAGCG 58.498 50.000 28.53 20.01 46.06 4.26
2040 2132 4.006989 TCCATCATTCAAGTAAACACCGG 58.993 43.478 0.00 0.00 0.00 5.28
2041 2133 4.695455 ACTCCATCATTCAAGTAAACACCG 59.305 41.667 0.00 0.00 0.00 4.94
2045 2137 8.328864 GTTCGATACTCCATCATTCAAGTAAAC 58.671 37.037 0.00 0.00 32.71 2.01
2055 2150 8.786826 TTTTTAACAGTTCGATACTCCATCAT 57.213 30.769 0.00 0.00 33.85 2.45
2149 2244 7.040409 ACGTTCAGGCTTTTTCTTTTATCTCAT 60.040 33.333 0.00 0.00 0.00 2.90
2215 2310 8.819643 AGCTTAAACTTTCACTCAGTAAGTAG 57.180 34.615 0.00 0.00 36.92 2.57
2264 2359 7.125507 ACCACTTGGGAATAAAATAATGCATCA 59.874 33.333 0.00 0.00 41.15 3.07
2288 2383 6.479990 AGCAGTTAAAGAAAAAGAAATGCACC 59.520 34.615 8.36 0.00 43.35 5.01
2515 2612 7.472334 ACTAGACATTTTCCAATCAGCAAAT 57.528 32.000 0.00 0.00 0.00 2.32
2711 2810 4.219507 CGGACATTATCTGAGGTGCTATCT 59.780 45.833 0.00 0.00 35.44 1.98
2732 2831 4.710324 AGTCTTACCTGTAGAGAGATCGG 58.290 47.826 0.00 0.00 0.00 4.18
2803 2902 4.938080 ACCAAGCGACATACTGATCTAAG 58.062 43.478 0.00 0.00 0.00 2.18
2807 2906 4.308899 ACTACCAAGCGACATACTGATC 57.691 45.455 0.00 0.00 0.00 2.92
3071 3172 6.022484 GCGAACTCGTATTTATTCAAGTTTGC 60.022 38.462 8.92 8.92 43.16 3.68
3291 3392 7.065803 CAGGACGAAACACAAAATCATAGGTAT 59.934 37.037 0.00 0.00 0.00 2.73
3339 3441 9.250246 TCAAATCCTCCGTTTCCTAAATAAATT 57.750 29.630 0.00 0.00 0.00 1.82
3485 3588 2.045524 TCTGCCCAATTCAAGCCAAAA 58.954 42.857 0.00 0.00 0.00 2.44
3756 3859 2.844654 TATGTACCCCGGTAACTGGA 57.155 50.000 0.00 0.00 45.28 3.86
3812 3915 3.545703 CATGTCCACATTTACCCTCTCC 58.454 50.000 0.00 0.00 33.61 3.71
3909 4012 1.953686 GGTTTGTGTGCAGAAGCCTTA 59.046 47.619 7.51 0.00 41.13 2.69
3968 4313 5.092554 TGTGTAACAGAAGAAACAGGACA 57.907 39.130 0.00 0.00 45.67 4.02
4127 5111 7.277981 GCAAAGAACGGAGAGAATAAGATGTTA 59.722 37.037 0.00 0.00 0.00 2.41
4164 5150 1.405821 ACATGTACTAGCCGTCTCAGC 59.594 52.381 0.00 0.00 0.00 4.26
4169 5155 4.741342 ACTGTTAACATGTACTAGCCGTC 58.259 43.478 9.13 0.00 0.00 4.79
4170 5156 4.796038 ACTGTTAACATGTACTAGCCGT 57.204 40.909 9.13 0.00 0.00 5.68
4171 5157 6.417044 GTGATACTGTTAACATGTACTAGCCG 59.583 42.308 9.13 0.00 0.00 5.52
4172 5158 6.700520 GGTGATACTGTTAACATGTACTAGCC 59.299 42.308 9.13 10.00 0.00 3.93
4173 5159 6.700520 GGGTGATACTGTTAACATGTACTAGC 59.299 42.308 9.13 13.36 0.00 3.42
4175 5161 7.966339 AGGGTGATACTGTTAACATGTACTA 57.034 36.000 9.13 4.52 0.00 1.82
4176 5162 6.869206 AGGGTGATACTGTTAACATGTACT 57.131 37.500 9.13 4.65 0.00 2.73
4177 5163 7.709613 CCTAAGGGTGATACTGTTAACATGTAC 59.290 40.741 9.13 4.69 0.00 2.90
4188 5196 4.227197 ACTGATCCCTAAGGGTGATACTG 58.773 47.826 0.00 3.00 44.74 2.74
4226 5234 5.833667 AGAAGGTAAAAGGAAAAACAGAGGG 59.166 40.000 0.00 0.00 0.00 4.30
4274 5282 0.391597 TGTGACGAACCTTCCTGGAC 59.608 55.000 0.00 0.00 39.71 4.02
4276 5284 1.070134 TCTTGTGACGAACCTTCCTGG 59.930 52.381 0.00 0.00 42.93 4.45
4361 5369 1.344438 GGAAGGGAAGGCCTTTGTTTG 59.656 52.381 21.54 0.00 32.96 2.93
4621 5629 0.320697 AGACAGCACTTACCCCGTTC 59.679 55.000 0.00 0.00 0.00 3.95
4634 5642 7.792374 TCATGAATAATTGGAAGTAGACAGC 57.208 36.000 0.00 0.00 0.00 4.40
4635 5643 8.288208 GCATCATGAATAATTGGAAGTAGACAG 58.712 37.037 0.00 0.00 0.00 3.51
4680 5688 1.396996 CGGGCTAAGATTTGTGGAACG 59.603 52.381 0.00 0.00 42.39 3.95
5038 6166 0.040058 TGGCCAGCCACTCATCAATT 59.960 50.000 7.43 0.00 41.89 2.32
5065 6196 2.887152 CCAACCAGGAAGAAGGTTCAAG 59.113 50.000 0.00 0.00 45.93 3.02
5066 6197 2.424234 CCCAACCAGGAAGAAGGTTCAA 60.424 50.000 0.00 0.00 45.93 2.69
5095 6226 7.458677 CAGTAACACATTCATCACATGTACAG 58.541 38.462 0.00 0.00 32.88 2.74
5096 6227 6.128309 GCAGTAACACATTCATCACATGTACA 60.128 38.462 0.00 0.00 32.88 2.90
5097 6228 6.128309 TGCAGTAACACATTCATCACATGTAC 60.128 38.462 0.00 0.00 32.88 2.90
5098 6229 5.936956 TGCAGTAACACATTCATCACATGTA 59.063 36.000 0.00 0.00 32.88 2.29
5099 6230 4.761227 TGCAGTAACACATTCATCACATGT 59.239 37.500 0.00 0.00 35.10 3.21
5100 6231 5.299582 TGCAGTAACACATTCATCACATG 57.700 39.130 0.00 0.00 0.00 3.21
5101 6232 5.963176 TTGCAGTAACACATTCATCACAT 57.037 34.783 0.00 0.00 0.00 3.21
5102 6233 5.507149 GGTTTGCAGTAACACATTCATCACA 60.507 40.000 3.80 0.00 0.00 3.58
5153 6284 9.914131 GTTAGAACAATTAGCCAATTCTTCTTT 57.086 29.630 11.90 0.00 39.05 2.52
5319 6450 4.151258 CAACCAAGTTGTGATAGCAGTG 57.849 45.455 1.45 0.00 38.56 3.66
5500 6634 3.485947 TCACAAGTTCACAACTGTTGC 57.514 42.857 19.82 4.25 41.91 4.17
5648 6782 5.993441 GGTCTGGTAGCAGTGTTTTACTTAA 59.007 40.000 20.76 0.00 37.60 1.85
5649 6783 5.306160 AGGTCTGGTAGCAGTGTTTTACTTA 59.694 40.000 20.76 0.00 37.60 2.24
5658 6792 1.893137 TGTGTAGGTCTGGTAGCAGTG 59.107 52.381 20.76 0.00 0.00 3.66
5693 6827 7.901029 TGATGGGTGAATATCTGAGTAAGATC 58.099 38.462 0.00 0.00 42.27 2.75
5757 6891 3.920231 TGGAGATGAAGAACATGAGGG 57.080 47.619 0.00 0.00 39.56 4.30
5857 6992 7.608308 ATTCTGAAACTGAATCAACTAGAGC 57.392 36.000 0.00 0.00 28.40 4.09
5914 7050 0.863144 GTTTTCGCGGTGCTTACAGA 59.137 50.000 6.13 0.00 0.00 3.41
6028 7167 9.851686 AATGATGGAGCAGTCATACTAAAATTA 57.148 29.630 0.00 0.00 34.14 1.40
6067 7206 7.445096 TGAGCTTTTCAGAATTGATAAGTGACA 59.555 33.333 8.70 5.34 41.57 3.58
6121 7260 1.181741 AGAGCAGTGCCTCGTCTCAA 61.182 55.000 12.58 0.00 36.95 3.02
6162 7301 2.224018 ACAATGTTGCCCACATGTCAAC 60.224 45.455 17.60 17.60 46.23 3.18
6248 7387 3.058432 GGTTTAAGACTGAAACTTCCCGC 60.058 47.826 14.01 0.00 37.05 6.13
6442 7609 3.410631 TTCTTGAATTCACCGCCACTA 57.589 42.857 7.89 0.00 0.00 2.74
6522 7689 8.967779 AGGGCTTGTGTTCTATAACCTATATA 57.032 34.615 0.00 0.00 34.49 0.86
6523 7690 7.873699 AGGGCTTGTGTTCTATAACCTATAT 57.126 36.000 0.00 0.00 34.49 0.86
6620 7787 5.676552 TGAACTAACAGTGGCAAAAGAGTA 58.323 37.500 0.00 0.00 0.00 2.59
6627 7794 6.892658 AACATAATGAACTAACAGTGGCAA 57.107 33.333 0.00 0.00 0.00 4.52
6699 7866 3.381908 AGGTACTCGTAAGGAATCTGCAG 59.618 47.826 7.63 7.63 38.47 4.41
6780 7947 4.602340 ACAAAGAAGACTACGGTCATGT 57.398 40.909 0.00 0.00 44.36 3.21
6948 8119 4.802039 CGCAGTAGTCCAAAACATATACGT 59.198 41.667 0.00 0.00 0.00 3.57
6975 8146 7.393515 AGAAACTCAAACCAGGTTATGTTATCC 59.606 37.037 4.87 5.06 0.00 2.59
7061 8232 3.281751 CTTGTGCGTCAGCGAACCG 62.282 63.158 0.00 0.00 45.80 4.44
7134 8305 5.373222 TGTTACTGTTTCACTGTAATGCCT 58.627 37.500 8.92 0.00 41.97 4.75
7137 8308 7.433708 TGGATGTTACTGTTTCACTGTAATG 57.566 36.000 8.92 0.00 41.97 1.90
7142 8313 7.099764 ACTAGATGGATGTTACTGTTTCACTG 58.900 38.462 0.00 0.00 0.00 3.66
7168 8339 4.511454 GCAGTCACAGAGTTCATAAACACA 59.489 41.667 0.00 0.00 37.88 3.72
7230 8427 1.671328 GCATTTAGAAACGGAGGGAGC 59.329 52.381 0.00 0.00 0.00 4.70
7268 8465 1.097232 TCCGTATGTGTCCGTACTGG 58.903 55.000 0.00 0.00 40.09 4.00
7358 8602 9.350951 CCTCCGTTCCTAAATATAAATCCTTTT 57.649 33.333 0.00 0.00 0.00 2.27
7365 8609 7.564660 TGTACTCCCTCCGTTCCTAAATATAAA 59.435 37.037 0.00 0.00 0.00 1.40
7412 8656 1.094073 CCGCAATCCCTGAGAAGCAG 61.094 60.000 0.00 0.00 44.49 4.24
7588 8843 3.314357 GCTTTGGTAAGAACGTGAACCTT 59.686 43.478 9.44 4.79 32.92 3.50
7594 8849 2.159707 CCATCGCTTTGGTAAGAACGTG 60.160 50.000 0.00 0.00 32.92 4.49
7604 8859 1.926511 GACCTGCACCATCGCTTTGG 61.927 60.000 0.54 0.54 42.82 3.28
7623 8879 2.266376 TTCCGTCGTGCTCATCTCCG 62.266 60.000 0.00 0.00 0.00 4.63
7768 9024 0.182061 CTGGCACTGGGTATGCTGAT 59.818 55.000 0.00 0.00 42.93 2.90
7833 9102 0.249238 GCCGATGAGTGGAGCTACAG 60.249 60.000 0.00 0.00 0.00 2.74
7839 9108 1.153489 CTGTGGCCGATGAGTGGAG 60.153 63.158 0.00 0.00 0.00 3.86
7871 9141 6.349033 CCCGGAAGTAAATAACCAGACAAAAG 60.349 42.308 0.73 0.00 0.00 2.27
7874 9144 4.041938 ACCCGGAAGTAAATAACCAGACAA 59.958 41.667 0.73 0.00 0.00 3.18
7875 9145 3.583966 ACCCGGAAGTAAATAACCAGACA 59.416 43.478 0.73 0.00 0.00 3.41
7901 9171 8.552034 GCATTCTCTTCCTATGTTACATGTAAC 58.448 37.037 32.63 32.63 44.16 2.50
7918 9188 3.498774 ACAGTCCACAAGCATTCTCTT 57.501 42.857 0.00 0.00 0.00 2.85
7924 9194 3.754965 ACAATGTACAGTCCACAAGCAT 58.245 40.909 0.33 0.00 0.00 3.79
7957 9228 5.300539 TCATGTGCAAGTTAAAGCCTGTTAA 59.699 36.000 0.00 0.00 0.00 2.01
7967 9241 8.748412 AGGCTTATTATTTCATGTGCAAGTTAA 58.252 29.630 0.00 0.00 0.00 2.01
8004 9278 5.250982 TCATGACTGAAAGAATCACAGCAT 58.749 37.500 0.00 0.00 37.43 3.79
8021 9295 7.199541 CAGGATGTGGAAAGATAATCATGAC 57.800 40.000 0.00 0.00 32.33 3.06
8046 9321 4.206375 TGAAAGAACATTCAAGCTGTGGA 58.794 39.130 0.00 0.00 36.42 4.02
8049 9324 4.560108 GCCATGAAAGAACATTCAAGCTGT 60.560 41.667 0.00 0.00 42.22 4.40
8079 9354 1.618343 AGACGGAAATTTTGCAAGGGG 59.382 47.619 0.00 0.00 0.00 4.79
8102 9378 0.534203 ATTGTCGTGCCAAGACCGTT 60.534 50.000 8.30 0.00 37.80 4.44
8103 9379 0.319083 TATTGTCGTGCCAAGACCGT 59.681 50.000 8.30 0.00 37.80 4.83
8104 9380 0.719465 GTATTGTCGTGCCAAGACCG 59.281 55.000 8.30 0.00 37.80 4.79
8105 9381 0.719465 CGTATTGTCGTGCCAAGACC 59.281 55.000 8.30 0.00 37.80 3.85
8106 9382 0.719465 CCGTATTGTCGTGCCAAGAC 59.281 55.000 3.67 3.67 38.98 3.01
8108 9384 0.999406 CTCCGTATTGTCGTGCCAAG 59.001 55.000 0.00 0.00 0.00 3.61
8109 9385 0.319083 ACTCCGTATTGTCGTGCCAA 59.681 50.000 0.00 0.00 0.00 4.52
8113 9389 1.640428 ATGCACTCCGTATTGTCGTG 58.360 50.000 0.00 0.00 0.00 4.35
8115 9391 5.633601 ACATAATATGCACTCCGTATTGTCG 59.366 40.000 0.00 0.00 36.54 4.35
8116 9392 7.170828 TCAACATAATATGCACTCCGTATTGTC 59.829 37.037 0.00 0.00 36.54 3.18
8117 9393 6.989759 TCAACATAATATGCACTCCGTATTGT 59.010 34.615 0.00 0.00 36.54 2.71
8118 9394 7.420184 TCAACATAATATGCACTCCGTATTG 57.580 36.000 0.00 0.00 36.54 1.90
8119 9395 7.361201 GCATCAACATAATATGCACTCCGTATT 60.361 37.037 0.00 0.00 44.27 1.89
8120 9396 6.092670 GCATCAACATAATATGCACTCCGTAT 59.907 38.462 0.00 0.00 44.27 3.06
8122 9398 4.214119 GCATCAACATAATATGCACTCCGT 59.786 41.667 0.00 0.00 44.27 4.69
8123 9399 4.453478 AGCATCAACATAATATGCACTCCG 59.547 41.667 8.99 0.00 46.66 4.63
8124 9400 5.704515 AGAGCATCAACATAATATGCACTCC 59.295 40.000 8.99 0.00 46.66 3.85
8126 9402 6.544931 ACAAGAGCATCAACATAATATGCACT 59.455 34.615 8.99 5.17 46.66 4.40
8127 9403 6.732154 ACAAGAGCATCAACATAATATGCAC 58.268 36.000 8.99 3.00 46.66 4.57
8128 9404 6.543100 TGACAAGAGCATCAACATAATATGCA 59.457 34.615 8.99 0.00 46.66 3.96
8129 9405 6.962686 TGACAAGAGCATCAACATAATATGC 58.037 36.000 0.00 0.00 45.02 3.14
8130 9406 8.618677 ACTTGACAAGAGCATCAACATAATATG 58.381 33.333 21.95 0.00 37.82 1.78
8134 9410 6.347644 CGAACTTGACAAGAGCATCAACATAA 60.348 38.462 21.95 0.00 37.82 1.90
8138 9414 3.248602 ACGAACTTGACAAGAGCATCAAC 59.751 43.478 21.95 3.28 37.82 3.18
8139 9415 3.248363 CACGAACTTGACAAGAGCATCAA 59.752 43.478 21.95 0.00 37.82 2.57
8145 9421 2.797156 CAGGACACGAACTTGACAAGAG 59.203 50.000 21.95 13.78 0.00 2.85
8150 9426 1.527311 GAAGCAGGACACGAACTTGAC 59.473 52.381 0.00 0.00 0.00 3.18
8154 9430 0.687354 ATGGAAGCAGGACACGAACT 59.313 50.000 0.00 0.00 0.00 3.01
8155 9431 1.079503 GATGGAAGCAGGACACGAAC 58.920 55.000 0.00 0.00 0.00 3.95
8158 9434 1.081892 CAAGATGGAAGCAGGACACG 58.918 55.000 0.00 0.00 0.00 4.49
8159 9435 1.808945 CACAAGATGGAAGCAGGACAC 59.191 52.381 0.00 0.00 0.00 3.67
8162 9438 3.507162 TTTCACAAGATGGAAGCAGGA 57.493 42.857 0.00 0.00 0.00 3.86
8163 9439 3.119245 CCATTTCACAAGATGGAAGCAGG 60.119 47.826 0.00 0.00 44.49 4.85
8164 9440 3.675228 GCCATTTCACAAGATGGAAGCAG 60.675 47.826 6.56 0.00 44.49 4.24
8165 9441 2.231964 GCCATTTCACAAGATGGAAGCA 59.768 45.455 6.56 0.00 44.49 3.91
8166 9442 2.231964 TGCCATTTCACAAGATGGAAGC 59.768 45.455 6.56 0.00 44.49 3.86
8167 9443 4.524316 TTGCCATTTCACAAGATGGAAG 57.476 40.909 6.56 0.00 44.49 3.46
8170 9446 3.592059 CCTTTGCCATTTCACAAGATGG 58.408 45.455 0.00 0.00 44.52 3.51
8171 9447 2.997986 GCCTTTGCCATTTCACAAGATG 59.002 45.455 0.00 0.00 0.00 2.90
8172 9448 2.633967 TGCCTTTGCCATTTCACAAGAT 59.366 40.909 0.00 0.00 36.33 2.40
8230 9506 0.652592 CGAATAAGCAGCCAACTCCG 59.347 55.000 0.00 0.00 0.00 4.63
8244 9520 5.242838 AGGAACAAAAATCTTGGCACGAATA 59.757 36.000 0.00 0.00 0.00 1.75
8364 9640 4.680237 TGTCGCCTGCTCCCAACG 62.680 66.667 0.00 0.00 0.00 4.10
8410 9686 4.903054 AGTACTAGGTAAAAACAGTGGCC 58.097 43.478 0.00 0.00 0.00 5.36
8459 9735 5.416947 GTTATACTGATCCAAACAGACGGT 58.583 41.667 0.00 0.00 38.55 4.83
8464 9740 7.483307 CCAAATGGTTATACTGATCCAAACAG 58.517 38.462 0.00 0.00 40.68 3.16
8465 9741 7.403312 CCAAATGGTTATACTGATCCAAACA 57.597 36.000 0.00 0.00 33.55 2.83
8495 9774 9.350357 CGCTCAGTTTTAAGATAGTAGTACAAA 57.650 33.333 2.52 0.00 0.00 2.83
8519 9798 4.327627 TGGTTTGTAAAAAGAAGCAAACGC 59.672 37.500 11.25 6.69 46.63 4.84
8541 9820 2.726821 ACATGGCCACCAGAAGTTATG 58.273 47.619 8.16 0.00 36.75 1.90
8570 9849 5.104374 CACATCATTGCCACCATTAGTTTC 58.896 41.667 0.00 0.00 0.00 2.78
8572 9851 4.088634 ACACATCATTGCCACCATTAGTT 58.911 39.130 0.00 0.00 0.00 2.24
8586 9865 3.243839 GGGACTGCAAACAAACACATCAT 60.244 43.478 0.00 0.00 0.00 2.45
8587 9866 2.100584 GGGACTGCAAACAAACACATCA 59.899 45.455 0.00 0.00 0.00 3.07
8588 9867 2.362077 AGGGACTGCAAACAAACACATC 59.638 45.455 0.00 0.00 37.18 3.06
8589 9868 2.387757 AGGGACTGCAAACAAACACAT 58.612 42.857 0.00 0.00 37.18 3.21
8590 9869 1.846007 AGGGACTGCAAACAAACACA 58.154 45.000 0.00 0.00 37.18 3.72
8650 9945 1.269448 TCCTTGCGAAATCCAACAAGC 59.731 47.619 0.00 0.00 38.52 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.