Multiple sequence alignment - TraesCS5B01G337100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G337100 chr5B 100.000 2849 0 0 681 3529 520418887 520421735 0.000000e+00 5262
1 TraesCS5B01G337100 chr5B 93.577 1339 85 1 1154 2491 520369585 520370923 0.000000e+00 1995
2 TraesCS5B01G337100 chr5B 100.000 517 0 0 1 517 520418207 520418723 0.000000e+00 955
3 TraesCS5B01G337100 chr5A 88.566 2755 181 49 872 3529 546360014 546362731 0.000000e+00 3219
4 TraesCS5B01G337100 chr5A 93.628 1334 85 0 1154 2487 546344828 546346161 0.000000e+00 1993
5 TraesCS5B01G337100 chr5A 76.059 1345 274 35 1162 2493 545984620 545985929 0.000000e+00 656
6 TraesCS5B01G337100 chr5A 75.844 1333 279 28 1162 2483 546154217 546155517 3.840000e-179 638
7 TraesCS5B01G337100 chr5A 91.954 174 13 1 723 896 546354643 546354815 3.520000e-60 243
8 TraesCS5B01G337100 chr5A 96.324 136 4 1 741 876 546359648 546359782 4.590000e-54 222
9 TraesCS5B01G337100 chr5D 90.809 1915 116 23 730 2600 430985065 430986963 0.000000e+00 2507
10 TraesCS5B01G337100 chr5D 94.828 1334 69 0 1154 2487 430968646 430969979 0.000000e+00 2082
11 TraesCS5B01G337100 chr5D 87.131 948 71 21 2606 3529 430991441 430992361 0.000000e+00 1027
12 TraesCS5B01G337100 chr5D 77.239 1340 246 45 1162 2482 430445545 430446844 0.000000e+00 730
13 TraesCS5B01G337100 chr5D 83.837 662 100 5 1835 2493 430512300 430512957 1.080000e-174 623
14 TraesCS5B01G337100 chr1B 92.813 487 34 1 3 488 9801868 9801382 0.000000e+00 704
15 TraesCS5B01G337100 chr1B 79.814 753 113 26 1409 2150 256824311 256823587 2.430000e-141 512
16 TraesCS5B01G337100 chr3D 81.405 484 85 4 2 482 136747668 136748149 1.190000e-104 390
17 TraesCS5B01G337100 chr4A 81.224 474 81 8 6 476 558688773 558689241 3.330000e-100 375
18 TraesCS5B01G337100 chr6A 80.140 428 77 8 59 482 568011715 568012138 2.640000e-81 313
19 TraesCS5B01G337100 chr6A 79.118 431 83 6 59 485 212160057 212159630 1.240000e-74 291
20 TraesCS5B01G337100 chr1A 84.644 267 41 0 2 268 351871517 351871251 2.090000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G337100 chr5B 520418207 520421735 3528 False 3108.5 5262 100.000 1 3529 2 chr5B.!!$F2 3528
1 TraesCS5B01G337100 chr5B 520369585 520370923 1338 False 1995.0 1995 93.577 1154 2491 1 chr5B.!!$F1 1337
2 TraesCS5B01G337100 chr5A 546344828 546346161 1333 False 1993.0 1993 93.628 1154 2487 1 chr5A.!!$F3 1333
3 TraesCS5B01G337100 chr5A 546359648 546362731 3083 False 1720.5 3219 92.445 741 3529 2 chr5A.!!$F5 2788
4 TraesCS5B01G337100 chr5A 545984620 545985929 1309 False 656.0 656 76.059 1162 2493 1 chr5A.!!$F1 1331
5 TraesCS5B01G337100 chr5A 546154217 546155517 1300 False 638.0 638 75.844 1162 2483 1 chr5A.!!$F2 1321
6 TraesCS5B01G337100 chr5D 430985065 430986963 1898 False 2507.0 2507 90.809 730 2600 1 chr5D.!!$F4 1870
7 TraesCS5B01G337100 chr5D 430968646 430969979 1333 False 2082.0 2082 94.828 1154 2487 1 chr5D.!!$F3 1333
8 TraesCS5B01G337100 chr5D 430991441 430992361 920 False 1027.0 1027 87.131 2606 3529 1 chr5D.!!$F5 923
9 TraesCS5B01G337100 chr5D 430445545 430446844 1299 False 730.0 730 77.239 1162 2482 1 chr5D.!!$F1 1320
10 TraesCS5B01G337100 chr5D 430512300 430512957 657 False 623.0 623 83.837 1835 2493 1 chr5D.!!$F2 658
11 TraesCS5B01G337100 chr1B 256823587 256824311 724 True 512.0 512 79.814 1409 2150 1 chr1B.!!$R2 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.032952 CACCACCGAAAAGAGGACGA 59.967 55.0 0.00 0.0 0.00 4.20 F
176 177 0.033699 AGATGGGAAAGGGCAGCTTC 60.034 55.0 0.00 0.0 0.00 3.86 F
177 178 0.033699 GATGGGAAAGGGCAGCTTCT 60.034 55.0 0.00 0.0 0.00 2.85 F
180 181 0.106967 GGGAAAGGGCAGCTTCTAGG 60.107 60.0 0.00 0.0 0.00 3.02 F
471 472 0.107066 ATGGCATGCGAAGGACATGA 60.107 50.0 12.44 0.0 46.33 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1032 1296 0.031449 GGAGGAAGAAGGCGATCGAG 59.969 60.000 21.57 0.00 0.00 4.04 R
1058 1323 0.595053 CTAGATACCGGCAGTGCACG 60.595 60.000 18.61 17.17 0.00 5.34 R
1864 2175 1.211703 TGAAGTCCTTGGTGAAGTGCA 59.788 47.619 0.00 0.00 0.00 4.57 R
2519 2864 4.972440 GCTCAAATCGCTGATTTAATCACC 59.028 41.667 3.20 0.00 39.82 4.02 R
2721 3085 1.999024 CAACAACCAAAACACAGCACC 59.001 47.619 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.356673 ACGAAAACTCCGGTCGCC 60.357 61.111 10.96 0.00 38.33 5.54
19 20 2.356673 GAAAACTCCGGTCGCCGT 60.357 61.111 15.38 0.00 46.80 5.68
20 21 1.080569 GAAAACTCCGGTCGCCGTA 60.081 57.895 15.38 1.04 46.80 4.02
21 22 1.347097 GAAAACTCCGGTCGCCGTAC 61.347 60.000 15.38 0.00 46.80 3.67
22 23 1.809567 AAAACTCCGGTCGCCGTACT 61.810 55.000 15.38 0.00 46.80 2.73
23 24 2.205243 AAACTCCGGTCGCCGTACTC 62.205 60.000 15.38 0.00 46.80 2.59
24 25 3.885521 CTCCGGTCGCCGTACTCC 61.886 72.222 15.38 0.00 46.80 3.85
25 26 4.415150 TCCGGTCGCCGTACTCCT 62.415 66.667 15.38 0.00 46.80 3.69
26 27 3.885521 CCGGTCGCCGTACTCCTC 61.886 72.222 15.38 0.00 46.80 3.71
27 28 3.885521 CGGTCGCCGTACTCCTCC 61.886 72.222 9.69 0.00 42.73 4.30
28 29 2.753043 GGTCGCCGTACTCCTCCA 60.753 66.667 0.00 0.00 0.00 3.86
29 30 2.125961 GGTCGCCGTACTCCTCCAT 61.126 63.158 0.00 0.00 0.00 3.41
30 31 1.359475 GTCGCCGTACTCCTCCATC 59.641 63.158 0.00 0.00 0.00 3.51
31 32 2.184830 TCGCCGTACTCCTCCATCG 61.185 63.158 0.00 0.00 0.00 3.84
32 33 2.027751 GCCGTACTCCTCCATCGC 59.972 66.667 0.00 0.00 0.00 4.58
33 34 2.728817 CCGTACTCCTCCATCGCC 59.271 66.667 0.00 0.00 0.00 5.54
34 35 1.828660 CCGTACTCCTCCATCGCCT 60.829 63.158 0.00 0.00 0.00 5.52
35 36 1.655329 CGTACTCCTCCATCGCCTC 59.345 63.158 0.00 0.00 0.00 4.70
36 37 0.820074 CGTACTCCTCCATCGCCTCT 60.820 60.000 0.00 0.00 0.00 3.69
37 38 0.671251 GTACTCCTCCATCGCCTCTG 59.329 60.000 0.00 0.00 0.00 3.35
38 39 0.468214 TACTCCTCCATCGCCTCTGG 60.468 60.000 0.00 0.00 34.93 3.86
39 40 3.157252 TCCTCCATCGCCTCTGGC 61.157 66.667 0.00 0.00 46.75 4.85
57 58 3.800863 TCGCGCAGAGACGAGGAC 61.801 66.667 8.75 0.00 33.69 3.85
58 59 4.103103 CGCGCAGAGACGAGGACA 62.103 66.667 8.75 0.00 34.06 4.02
59 60 2.505118 GCGCAGAGACGAGGACAC 60.505 66.667 0.30 0.00 34.06 3.67
60 61 2.179517 CGCAGAGACGAGGACACC 59.820 66.667 0.00 0.00 34.06 4.16
61 62 2.626780 CGCAGAGACGAGGACACCA 61.627 63.158 0.00 0.00 34.06 4.17
62 63 1.080434 GCAGAGACGAGGACACCAC 60.080 63.158 0.00 0.00 0.00 4.16
63 64 1.587054 CAGAGACGAGGACACCACC 59.413 63.158 0.00 0.00 0.00 4.61
64 65 0.896019 CAGAGACGAGGACACCACCT 60.896 60.000 0.00 0.00 43.64 4.00
70 71 4.988716 AGGACACCACCTCCGCGA 62.989 66.667 8.23 0.00 34.98 5.87
71 72 3.998672 GGACACCACCTCCGCGAA 61.999 66.667 8.23 0.00 0.00 4.70
72 73 2.737376 GACACCACCTCCGCGAAC 60.737 66.667 8.23 0.00 0.00 3.95
73 74 4.657824 ACACCACCTCCGCGAACG 62.658 66.667 8.23 0.00 39.67 3.95
74 75 4.351938 CACCACCTCCGCGAACGA 62.352 66.667 8.23 0.00 43.93 3.85
75 76 3.379445 ACCACCTCCGCGAACGAT 61.379 61.111 8.23 0.00 43.93 3.73
76 77 2.582498 CCACCTCCGCGAACGATC 60.582 66.667 8.23 0.00 43.93 3.69
77 78 2.490217 CACCTCCGCGAACGATCT 59.510 61.111 8.23 0.00 43.93 2.75
78 79 1.874019 CACCTCCGCGAACGATCTG 60.874 63.158 8.23 0.00 43.93 2.90
79 80 2.341101 ACCTCCGCGAACGATCTGT 61.341 57.895 8.23 0.00 43.93 3.41
80 81 1.874019 CCTCCGCGAACGATCTGTG 60.874 63.158 8.23 0.00 43.93 3.66
81 82 1.874019 CTCCGCGAACGATCTGTGG 60.874 63.158 8.23 9.62 43.93 4.17
82 83 2.126071 CCGCGAACGATCTGTGGT 60.126 61.111 8.23 0.00 43.93 4.16
83 84 2.158959 CCGCGAACGATCTGTGGTC 61.159 63.158 8.23 0.00 43.93 4.02
84 85 1.443702 CGCGAACGATCTGTGGTCA 60.444 57.895 0.00 0.00 43.93 4.02
85 86 1.674611 CGCGAACGATCTGTGGTCAC 61.675 60.000 0.00 0.00 43.93 3.67
86 87 1.352156 GCGAACGATCTGTGGTCACC 61.352 60.000 0.00 0.00 0.00 4.02
87 88 0.038618 CGAACGATCTGTGGTCACCA 60.039 55.000 0.00 0.00 0.00 4.17
98 99 3.266240 GGTCACCACCAATCTTCCC 57.734 57.895 0.00 0.00 43.17 3.97
99 100 0.323451 GGTCACCACCAATCTTCCCC 60.323 60.000 0.00 0.00 43.17 4.81
100 101 0.698818 GTCACCACCAATCTTCCCCT 59.301 55.000 0.00 0.00 0.00 4.79
101 102 0.991920 TCACCACCAATCTTCCCCTC 59.008 55.000 0.00 0.00 0.00 4.30
102 103 0.034089 CACCACCAATCTTCCCCTCC 60.034 60.000 0.00 0.00 0.00 4.30
103 104 1.214992 ACCACCAATCTTCCCCTCCC 61.215 60.000 0.00 0.00 0.00 4.30
104 105 1.214305 CCACCAATCTTCCCCTCCCA 61.214 60.000 0.00 0.00 0.00 4.37
105 106 0.034089 CACCAATCTTCCCCTCCCAC 60.034 60.000 0.00 0.00 0.00 4.61
106 107 1.214992 ACCAATCTTCCCCTCCCACC 61.215 60.000 0.00 0.00 0.00 4.61
107 108 1.214305 CCAATCTTCCCCTCCCACCA 61.214 60.000 0.00 0.00 0.00 4.17
108 109 0.034089 CAATCTTCCCCTCCCACCAC 60.034 60.000 0.00 0.00 0.00 4.16
109 110 1.214992 AATCTTCCCCTCCCACCACC 61.215 60.000 0.00 0.00 0.00 4.61
110 111 3.717294 CTTCCCCTCCCACCACCG 61.717 72.222 0.00 0.00 0.00 4.94
111 112 4.257810 TTCCCCTCCCACCACCGA 62.258 66.667 0.00 0.00 0.00 4.69
112 113 3.795977 TTCCCCTCCCACCACCGAA 62.796 63.158 0.00 0.00 0.00 4.30
113 114 3.253838 CCCCTCCCACCACCGAAA 61.254 66.667 0.00 0.00 0.00 3.46
114 115 2.836187 CCCCTCCCACCACCGAAAA 61.836 63.158 0.00 0.00 0.00 2.29
115 116 1.303317 CCCTCCCACCACCGAAAAG 60.303 63.158 0.00 0.00 0.00 2.27
116 117 1.758592 CCTCCCACCACCGAAAAGA 59.241 57.895 0.00 0.00 0.00 2.52
117 118 0.321653 CCTCCCACCACCGAAAAGAG 60.322 60.000 0.00 0.00 0.00 2.85
118 119 0.321653 CTCCCACCACCGAAAAGAGG 60.322 60.000 0.00 0.00 0.00 3.69
119 120 0.765135 TCCCACCACCGAAAAGAGGA 60.765 55.000 0.00 0.00 0.00 3.71
120 121 0.605589 CCCACCACCGAAAAGAGGAC 60.606 60.000 0.00 0.00 0.00 3.85
121 122 0.949105 CCACCACCGAAAAGAGGACG 60.949 60.000 0.00 0.00 0.00 4.79
122 123 0.032952 CACCACCGAAAAGAGGACGA 59.967 55.000 0.00 0.00 0.00 4.20
123 124 0.754472 ACCACCGAAAAGAGGACGAA 59.246 50.000 0.00 0.00 0.00 3.85
124 125 1.139455 ACCACCGAAAAGAGGACGAAA 59.861 47.619 0.00 0.00 0.00 3.46
125 126 2.224450 ACCACCGAAAAGAGGACGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
126 127 2.415512 CCACCGAAAAGAGGACGAAATC 59.584 50.000 0.00 0.00 0.00 2.17
127 128 3.326747 CACCGAAAAGAGGACGAAATCT 58.673 45.455 0.00 0.00 0.00 2.40
128 129 3.746492 CACCGAAAAGAGGACGAAATCTT 59.254 43.478 0.00 0.00 37.36 2.40
129 130 3.995048 ACCGAAAAGAGGACGAAATCTTC 59.005 43.478 0.00 0.00 34.71 2.87
144 145 6.986904 GAAATCTTCGATCTAGGGTTTTGT 57.013 37.500 0.00 0.00 0.00 2.83
145 146 6.743575 AAATCTTCGATCTAGGGTTTTGTG 57.256 37.500 0.00 0.00 0.00 3.33
146 147 4.202245 TCTTCGATCTAGGGTTTTGTGG 57.798 45.455 0.00 0.00 0.00 4.17
147 148 2.396590 TCGATCTAGGGTTTTGTGGC 57.603 50.000 0.00 0.00 0.00 5.01
148 149 1.006832 CGATCTAGGGTTTTGTGGCG 58.993 55.000 0.00 0.00 0.00 5.69
149 150 0.733150 GATCTAGGGTTTTGTGGCGC 59.267 55.000 0.00 0.00 0.00 6.53
150 151 0.679960 ATCTAGGGTTTTGTGGCGCC 60.680 55.000 22.73 22.73 0.00 6.53
151 152 1.303317 CTAGGGTTTTGTGGCGCCT 60.303 57.895 29.70 6.08 0.00 5.52
152 153 1.302993 TAGGGTTTTGTGGCGCCTC 60.303 57.895 29.70 25.38 0.00 4.70
153 154 2.757980 TAGGGTTTTGTGGCGCCTCC 62.758 60.000 29.70 18.65 0.00 4.30
154 155 3.680786 GGTTTTGTGGCGCCTCCC 61.681 66.667 29.70 16.45 0.00 4.30
155 156 2.909965 GTTTTGTGGCGCCTCCCA 60.910 61.111 29.70 18.50 0.00 4.37
156 157 2.123683 TTTTGTGGCGCCTCCCAA 60.124 55.556 29.70 23.09 36.46 4.12
157 158 1.758514 TTTTGTGGCGCCTCCCAAA 60.759 52.632 29.70 26.97 36.46 3.28
158 159 1.743321 TTTTGTGGCGCCTCCCAAAG 61.743 55.000 29.70 0.00 36.80 2.77
159 160 2.632602 TTTGTGGCGCCTCCCAAAGA 62.633 55.000 29.70 10.69 36.46 2.52
160 161 2.044946 GTGGCGCCTCCCAAAGAT 60.045 61.111 29.70 0.00 36.46 2.40
161 162 2.045045 TGGCGCCTCCCAAAGATG 60.045 61.111 29.70 0.00 30.32 2.90
171 172 3.379617 CCAAAGATGGGAAAGGGCA 57.620 52.632 0.00 0.00 43.51 5.36
172 173 1.188863 CCAAAGATGGGAAAGGGCAG 58.811 55.000 0.00 0.00 43.51 4.85
173 174 0.533951 CAAAGATGGGAAAGGGCAGC 59.466 55.000 0.00 0.00 0.00 5.25
174 175 0.411058 AAAGATGGGAAAGGGCAGCT 59.589 50.000 0.00 0.00 0.00 4.24
175 176 0.411058 AAGATGGGAAAGGGCAGCTT 59.589 50.000 0.00 0.00 0.00 3.74
176 177 0.033699 AGATGGGAAAGGGCAGCTTC 60.034 55.000 0.00 0.00 0.00 3.86
177 178 0.033699 GATGGGAAAGGGCAGCTTCT 60.034 55.000 0.00 0.00 0.00 2.85
178 179 1.212935 GATGGGAAAGGGCAGCTTCTA 59.787 52.381 0.00 0.00 0.00 2.10
179 180 0.620556 TGGGAAAGGGCAGCTTCTAG 59.379 55.000 0.00 0.00 0.00 2.43
180 181 0.106967 GGGAAAGGGCAGCTTCTAGG 60.107 60.000 0.00 0.00 0.00 3.02
181 182 0.621082 GGAAAGGGCAGCTTCTAGGT 59.379 55.000 0.00 0.00 0.00 3.08
182 183 1.407575 GGAAAGGGCAGCTTCTAGGTC 60.408 57.143 0.00 0.00 0.00 3.85
183 184 1.279271 GAAAGGGCAGCTTCTAGGTCA 59.721 52.381 0.00 0.00 0.00 4.02
184 185 1.362224 AAGGGCAGCTTCTAGGTCAA 58.638 50.000 0.00 0.00 0.00 3.18
185 186 0.908198 AGGGCAGCTTCTAGGTCAAG 59.092 55.000 0.00 0.00 0.00 3.02
186 187 0.905357 GGGCAGCTTCTAGGTCAAGA 59.095 55.000 0.00 0.00 0.00 3.02
187 188 1.279271 GGGCAGCTTCTAGGTCAAGAA 59.721 52.381 0.00 0.00 34.39 2.52
188 189 2.092699 GGGCAGCTTCTAGGTCAAGAAT 60.093 50.000 0.00 0.00 35.04 2.40
189 190 2.941720 GGCAGCTTCTAGGTCAAGAATG 59.058 50.000 0.00 0.00 35.04 2.67
190 191 2.941720 GCAGCTTCTAGGTCAAGAATGG 59.058 50.000 0.00 0.00 35.04 3.16
191 192 3.539604 CAGCTTCTAGGTCAAGAATGGG 58.460 50.000 0.00 0.00 35.04 4.00
192 193 2.507471 AGCTTCTAGGTCAAGAATGGGG 59.493 50.000 0.00 0.00 35.04 4.96
193 194 2.924421 CTTCTAGGTCAAGAATGGGGC 58.076 52.381 0.00 0.00 35.04 5.80
194 195 0.830648 TCTAGGTCAAGAATGGGGCG 59.169 55.000 0.00 0.00 0.00 6.13
195 196 0.830648 CTAGGTCAAGAATGGGGCGA 59.169 55.000 0.00 0.00 0.00 5.54
196 197 0.830648 TAGGTCAAGAATGGGGCGAG 59.169 55.000 0.00 0.00 0.00 5.03
197 198 2.115291 GGTCAAGAATGGGGCGAGC 61.115 63.158 0.00 0.00 0.00 5.03
198 199 2.115291 GTCAAGAATGGGGCGAGCC 61.115 63.158 5.37 5.37 0.00 4.70
199 200 3.204827 CAAGAATGGGGCGAGCCG 61.205 66.667 8.14 0.00 36.85 5.52
215 216 4.016706 CGCTCGGGGTGGGACTTT 62.017 66.667 0.00 0.00 0.00 2.66
216 217 2.434774 GCTCGGGGTGGGACTTTT 59.565 61.111 0.00 0.00 0.00 2.27
217 218 1.971695 GCTCGGGGTGGGACTTTTG 60.972 63.158 0.00 0.00 0.00 2.44
218 219 1.454539 CTCGGGGTGGGACTTTTGT 59.545 57.895 0.00 0.00 0.00 2.83
219 220 0.688487 CTCGGGGTGGGACTTTTGTA 59.312 55.000 0.00 0.00 0.00 2.41
220 221 0.688487 TCGGGGTGGGACTTTTGTAG 59.312 55.000 0.00 0.00 0.00 2.74
221 222 0.399075 CGGGGTGGGACTTTTGTAGT 59.601 55.000 0.00 0.00 40.71 2.73
230 231 3.299340 GACTTTTGTAGTCCTCTCGCA 57.701 47.619 0.00 0.00 46.30 5.10
231 232 3.650139 GACTTTTGTAGTCCTCTCGCAA 58.350 45.455 0.00 0.00 46.30 4.85
232 233 3.391049 ACTTTTGTAGTCCTCTCGCAAC 58.609 45.455 0.00 0.00 28.23 4.17
233 234 2.450609 TTTGTAGTCCTCTCGCAACC 57.549 50.000 0.00 0.00 0.00 3.77
234 235 1.334160 TTGTAGTCCTCTCGCAACCA 58.666 50.000 0.00 0.00 0.00 3.67
235 236 0.888619 TGTAGTCCTCTCGCAACCAG 59.111 55.000 0.00 0.00 0.00 4.00
236 237 0.458716 GTAGTCCTCTCGCAACCAGC 60.459 60.000 0.00 0.00 40.87 4.85
237 238 1.605058 TAGTCCTCTCGCAACCAGCC 61.605 60.000 0.00 0.00 41.38 4.85
238 239 2.604686 TCCTCTCGCAACCAGCCT 60.605 61.111 0.00 0.00 41.38 4.58
239 240 2.125350 CCTCTCGCAACCAGCCTC 60.125 66.667 0.00 0.00 41.38 4.70
240 241 2.125350 CTCTCGCAACCAGCCTCC 60.125 66.667 0.00 0.00 41.38 4.30
241 242 2.922503 TCTCGCAACCAGCCTCCA 60.923 61.111 0.00 0.00 41.38 3.86
242 243 2.743928 CTCGCAACCAGCCTCCAC 60.744 66.667 0.00 0.00 41.38 4.02
243 244 4.680237 TCGCAACCAGCCTCCACG 62.680 66.667 0.00 0.00 41.38 4.94
246 247 4.641645 CAACCAGCCTCCACGCCA 62.642 66.667 0.00 0.00 0.00 5.69
247 248 3.650950 AACCAGCCTCCACGCCAT 61.651 61.111 0.00 0.00 0.00 4.40
248 249 3.925630 AACCAGCCTCCACGCCATG 62.926 63.158 0.00 0.00 0.00 3.66
257 258 4.935495 CACGCCATGGATCCCCCG 62.935 72.222 18.40 10.98 37.93 5.73
259 260 3.640407 CGCCATGGATCCCCCGAT 61.640 66.667 18.40 0.00 37.93 4.18
260 261 2.352805 GCCATGGATCCCCCGATC 59.647 66.667 18.40 0.00 43.73 3.69
261 262 2.227036 GCCATGGATCCCCCGATCT 61.227 63.158 18.40 0.00 43.90 2.75
262 263 1.986413 CCATGGATCCCCCGATCTC 59.014 63.158 5.56 0.00 43.90 2.75
263 264 1.557269 CCATGGATCCCCCGATCTCC 61.557 65.000 5.56 0.00 43.90 3.71
264 265 0.837691 CATGGATCCCCCGATCTCCA 60.838 60.000 9.90 1.93 43.90 3.86
265 266 0.119968 ATGGATCCCCCGATCTCCAT 59.880 55.000 9.90 6.18 43.90 3.41
266 267 0.545309 TGGATCCCCCGATCTCCATC 60.545 60.000 9.90 0.00 43.90 3.51
267 268 1.268283 GGATCCCCCGATCTCCATCC 61.268 65.000 0.00 0.00 43.90 3.51
268 269 0.545309 GATCCCCCGATCTCCATCCA 60.545 60.000 0.00 0.00 41.59 3.41
269 270 0.838122 ATCCCCCGATCTCCATCCAC 60.838 60.000 0.00 0.00 0.00 4.02
270 271 2.737180 CCCCGATCTCCATCCACG 59.263 66.667 0.00 0.00 0.00 4.94
271 272 2.134287 CCCCGATCTCCATCCACGT 61.134 63.158 0.00 0.00 0.00 4.49
272 273 1.068083 CCCGATCTCCATCCACGTG 59.932 63.158 9.08 9.08 0.00 4.49
273 274 1.068083 CCGATCTCCATCCACGTGG 59.932 63.158 29.26 29.26 40.76 4.94
274 275 1.592669 CGATCTCCATCCACGTGGC 60.593 63.158 30.25 11.97 39.19 5.01
275 276 1.227674 GATCTCCATCCACGTGGCC 60.228 63.158 30.25 0.00 39.19 5.36
276 277 1.971505 GATCTCCATCCACGTGGCCA 61.972 60.000 30.25 14.58 39.19 5.36
277 278 2.257409 ATCTCCATCCACGTGGCCAC 62.257 60.000 30.25 26.78 39.19 5.01
278 279 3.976701 CTCCATCCACGTGGCCACC 62.977 68.421 30.25 12.55 39.19 4.61
279 280 4.343323 CCATCCACGTGGCCACCA 62.343 66.667 30.25 12.91 34.44 4.17
280 281 2.045045 CATCCACGTGGCCACCAT 60.045 61.111 30.25 15.96 35.28 3.55
281 282 2.114670 CATCCACGTGGCCACCATC 61.115 63.158 30.25 5.55 35.28 3.51
282 283 3.344137 ATCCACGTGGCCACCATCC 62.344 63.158 30.25 5.12 35.28 3.51
283 284 4.343323 CCACGTGGCCACCATCCA 62.343 66.667 29.95 0.00 35.28 3.41
309 310 4.489771 GACCCCACCGCATCCCTG 62.490 72.222 0.00 0.00 0.00 4.45
311 312 4.802051 CCCCACCGCATCCCTGTG 62.802 72.222 0.00 0.00 0.00 3.66
319 320 3.716195 CATCCCTGTGCGGACCCA 61.716 66.667 4.04 0.00 33.77 4.51
320 321 3.402681 ATCCCTGTGCGGACCCAG 61.403 66.667 4.04 0.00 33.77 4.45
324 325 2.124983 CTGTGCGGACCCAGGATG 60.125 66.667 4.04 0.00 0.00 3.51
325 326 4.408821 TGTGCGGACCCAGGATGC 62.409 66.667 4.04 0.00 31.97 3.91
338 339 3.564218 GATGCCTGGGCCCGAGAT 61.564 66.667 19.37 6.16 41.09 2.75
339 340 3.839353 GATGCCTGGGCCCGAGATG 62.839 68.421 19.37 4.24 41.09 2.90
346 347 3.942439 GGCCCGAGATGCCCTACC 61.942 72.222 0.00 0.00 43.33 3.18
347 348 3.942439 GCCCGAGATGCCCTACCC 61.942 72.222 0.00 0.00 0.00 3.69
348 349 3.616721 CCCGAGATGCCCTACCCG 61.617 72.222 0.00 0.00 0.00 5.28
349 350 4.301027 CCGAGATGCCCTACCCGC 62.301 72.222 0.00 0.00 0.00 6.13
350 351 3.536917 CGAGATGCCCTACCCGCA 61.537 66.667 0.00 0.00 41.28 5.69
351 352 2.109181 GAGATGCCCTACCCGCAC 59.891 66.667 0.00 0.00 39.49 5.34
352 353 3.462199 GAGATGCCCTACCCGCACC 62.462 68.421 0.00 0.00 39.49 5.01
353 354 3.792736 GATGCCCTACCCGCACCA 61.793 66.667 0.00 0.00 39.49 4.17
354 355 3.757248 GATGCCCTACCCGCACCAG 62.757 68.421 0.00 0.00 39.49 4.00
366 367 4.838152 CACCAGGCCGACCGGATG 62.838 72.222 9.46 9.56 42.76 3.51
369 370 4.552365 CAGGCCGACCGGATGCAT 62.552 66.667 9.46 0.00 42.76 3.96
370 371 4.552365 AGGCCGACCGGATGCATG 62.552 66.667 9.46 0.00 42.76 4.06
373 374 3.576356 CCGACCGGATGCATGCAC 61.576 66.667 25.37 16.53 37.50 4.57
374 375 2.512286 CGACCGGATGCATGCACT 60.512 61.111 25.37 12.53 0.00 4.40
375 376 2.528743 CGACCGGATGCATGCACTC 61.529 63.158 25.37 20.05 0.00 3.51
376 377 2.124570 ACCGGATGCATGCACTCC 60.125 61.111 25.37 26.12 0.00 3.85
377 378 3.274586 CCGGATGCATGCACTCCG 61.275 66.667 37.55 37.55 41.81 4.63
378 379 2.512286 CGGATGCATGCACTCCGT 60.512 61.111 36.85 21.73 39.68 4.69
379 380 2.528743 CGGATGCATGCACTCCGTC 61.529 63.158 36.85 26.45 39.68 4.79
380 381 2.182842 GGATGCATGCACTCCGTCC 61.183 63.158 25.37 21.50 0.00 4.79
381 382 2.124570 ATGCATGCACTCCGTCCC 60.125 61.111 25.37 0.00 0.00 4.46
382 383 3.704231 ATGCATGCACTCCGTCCCC 62.704 63.158 25.37 0.00 0.00 4.81
383 384 4.408821 GCATGCACTCCGTCCCCA 62.409 66.667 14.21 0.00 0.00 4.96
384 385 2.436646 CATGCACTCCGTCCCCAC 60.437 66.667 0.00 0.00 0.00 4.61
385 386 3.717294 ATGCACTCCGTCCCCACC 61.717 66.667 0.00 0.00 0.00 4.61
404 405 3.799755 GGGCGTGGCACGTTCATC 61.800 66.667 36.68 21.67 44.73 2.92
405 406 2.742372 GGCGTGGCACGTTCATCT 60.742 61.111 36.68 0.00 44.73 2.90
406 407 2.476051 GCGTGGCACGTTCATCTG 59.524 61.111 36.68 10.97 44.73 2.90
407 408 2.317609 GCGTGGCACGTTCATCTGT 61.318 57.895 36.68 0.00 44.73 3.41
408 409 1.011968 GCGTGGCACGTTCATCTGTA 61.012 55.000 36.68 0.00 44.73 2.74
409 410 0.713883 CGTGGCACGTTCATCTGTAC 59.286 55.000 30.56 0.00 36.74 2.90
410 411 1.076332 GTGGCACGTTCATCTGTACC 58.924 55.000 0.00 0.00 0.00 3.34
411 412 0.389296 TGGCACGTTCATCTGTACCG 60.389 55.000 0.00 0.00 0.00 4.02
412 413 0.108992 GGCACGTTCATCTGTACCGA 60.109 55.000 0.00 0.00 0.00 4.69
413 414 0.989890 GCACGTTCATCTGTACCGAC 59.010 55.000 0.00 0.00 0.00 4.79
414 415 1.256652 CACGTTCATCTGTACCGACG 58.743 55.000 0.00 0.00 36.65 5.12
415 416 0.169672 ACGTTCATCTGTACCGACGG 59.830 55.000 13.61 13.61 35.06 4.79
416 417 0.448990 CGTTCATCTGTACCGACGGA 59.551 55.000 23.38 0.74 45.15 4.69
423 424 2.439409 TCTGTACCGACGGATTTCTCA 58.561 47.619 23.38 8.74 35.96 3.27
424 425 2.163010 TCTGTACCGACGGATTTCTCAC 59.837 50.000 23.38 6.79 35.96 3.51
425 426 1.203052 TGTACCGACGGATTTCTCACC 59.797 52.381 23.38 0.00 0.00 4.02
432 433 1.583054 CGGATTTCTCACCGGAATCC 58.417 55.000 17.87 17.87 44.59 3.01
443 444 3.626472 GGAATCCGATCGCGAACC 58.374 61.111 15.24 7.42 40.82 3.62
444 445 1.067582 GGAATCCGATCGCGAACCT 59.932 57.895 15.24 0.00 40.82 3.50
445 446 0.529992 GGAATCCGATCGCGAACCTT 60.530 55.000 15.24 2.82 40.82 3.50
446 447 0.577269 GAATCCGATCGCGAACCTTG 59.423 55.000 15.24 0.00 40.82 3.61
447 448 0.810031 AATCCGATCGCGAACCTTGG 60.810 55.000 15.24 10.88 40.82 3.61
448 449 3.564027 CCGATCGCGAACCTTGGC 61.564 66.667 15.24 0.00 40.82 4.52
454 455 4.458164 GCGAACCTTGGCGAAATG 57.542 55.556 0.00 0.00 0.00 2.32
455 456 1.154035 GCGAACCTTGGCGAAATGG 60.154 57.895 0.00 0.00 0.00 3.16
456 457 1.154035 CGAACCTTGGCGAAATGGC 60.154 57.895 0.00 0.00 45.12 4.40
463 464 2.489285 GGCGAAATGGCATGCGAA 59.511 55.556 22.17 2.40 44.08 4.70
464 465 1.587088 GGCGAAATGGCATGCGAAG 60.587 57.895 22.17 2.72 44.08 3.79
465 466 1.587088 GCGAAATGGCATGCGAAGG 60.587 57.895 22.17 0.00 0.00 3.46
466 467 1.992233 GCGAAATGGCATGCGAAGGA 61.992 55.000 22.17 0.00 0.00 3.36
467 468 0.248215 CGAAATGGCATGCGAAGGAC 60.248 55.000 12.44 0.00 0.00 3.85
468 469 0.810648 GAAATGGCATGCGAAGGACA 59.189 50.000 12.44 2.76 0.00 4.02
469 470 1.406539 GAAATGGCATGCGAAGGACAT 59.593 47.619 12.44 5.29 0.00 3.06
470 471 0.742505 AATGGCATGCGAAGGACATG 59.257 50.000 12.44 0.00 46.19 3.21
471 472 0.107066 ATGGCATGCGAAGGACATGA 60.107 50.000 12.44 0.00 46.33 3.07
472 473 0.107066 TGGCATGCGAAGGACATGAT 60.107 50.000 12.44 0.00 46.33 2.45
473 474 0.590195 GGCATGCGAAGGACATGATC 59.410 55.000 12.44 0.00 46.33 2.92
474 475 1.590932 GCATGCGAAGGACATGATCT 58.409 50.000 0.00 0.00 46.33 2.75
475 476 1.263484 GCATGCGAAGGACATGATCTG 59.737 52.381 0.00 0.00 46.33 2.90
476 477 1.871676 CATGCGAAGGACATGATCTGG 59.128 52.381 0.00 0.00 46.33 3.86
477 478 0.462581 TGCGAAGGACATGATCTGGC 60.463 55.000 0.00 4.81 0.00 4.85
484 485 2.898705 GGACATGATCTGGCCGATATC 58.101 52.381 0.00 7.32 45.37 1.63
485 486 2.419297 GGACATGATCTGGCCGATATCC 60.419 54.545 0.00 10.30 45.37 2.59
486 487 2.234661 GACATGATCTGGCCGATATCCA 59.765 50.000 0.00 5.35 30.84 3.41
487 488 2.027745 ACATGATCTGGCCGATATCCAC 60.028 50.000 0.00 0.00 30.84 4.02
488 489 2.015456 TGATCTGGCCGATATCCACT 57.985 50.000 9.60 0.00 30.84 4.00
489 490 2.329267 TGATCTGGCCGATATCCACTT 58.671 47.619 9.60 0.00 30.84 3.16
490 491 3.506398 TGATCTGGCCGATATCCACTTA 58.494 45.455 9.60 0.00 30.84 2.24
491 492 3.258372 TGATCTGGCCGATATCCACTTAC 59.742 47.826 9.60 0.00 30.84 2.34
492 493 2.958818 TCTGGCCGATATCCACTTACT 58.041 47.619 0.00 0.00 0.00 2.24
493 494 2.891580 TCTGGCCGATATCCACTTACTC 59.108 50.000 0.00 0.00 0.00 2.59
494 495 2.894126 CTGGCCGATATCCACTTACTCT 59.106 50.000 0.00 0.00 0.00 3.24
495 496 4.079970 CTGGCCGATATCCACTTACTCTA 58.920 47.826 0.00 0.00 0.00 2.43
496 497 3.825014 TGGCCGATATCCACTTACTCTAC 59.175 47.826 0.00 0.00 0.00 2.59
497 498 3.119919 GGCCGATATCCACTTACTCTACG 60.120 52.174 0.00 0.00 0.00 3.51
498 499 3.119919 GCCGATATCCACTTACTCTACGG 60.120 52.174 0.00 0.00 39.64 4.02
499 500 4.321718 CCGATATCCACTTACTCTACGGA 58.678 47.826 0.00 0.00 39.11 4.69
500 501 4.942483 CCGATATCCACTTACTCTACGGAT 59.058 45.833 0.00 0.00 39.73 4.18
501 502 6.111382 CCGATATCCACTTACTCTACGGATA 58.889 44.000 0.00 0.00 41.65 2.59
503 504 7.930325 CCGATATCCACTTACTCTACGGATATA 59.070 40.741 8.78 0.00 45.28 0.86
504 505 8.763356 CGATATCCACTTACTCTACGGATATAC 58.237 40.741 8.78 3.83 45.28 1.47
505 506 9.835389 GATATCCACTTACTCTACGGATATACT 57.165 37.037 8.78 0.00 45.28 2.12
506 507 9.835389 ATATCCACTTACTCTACGGATATACTC 57.165 37.037 7.33 0.00 44.09 2.59
507 508 6.471146 TCCACTTACTCTACGGATATACTCC 58.529 44.000 0.00 0.00 41.07 3.85
508 509 5.647225 CCACTTACTCTACGGATATACTCCC 59.353 48.000 0.00 0.00 41.49 4.30
509 510 6.236409 CACTTACTCTACGGATATACTCCCA 58.764 44.000 0.00 0.00 41.49 4.37
510 511 6.713903 CACTTACTCTACGGATATACTCCCAA 59.286 42.308 0.00 0.00 41.49 4.12
511 512 7.393796 CACTTACTCTACGGATATACTCCCAAT 59.606 40.741 0.00 0.00 41.49 3.16
512 513 8.609483 ACTTACTCTACGGATATACTCCCAATA 58.391 37.037 0.00 0.00 41.49 1.90
513 514 9.458727 CTTACTCTACGGATATACTCCCAATAA 57.541 37.037 0.00 0.00 41.49 1.40
514 515 7.941431 ACTCTACGGATATACTCCCAATAAG 57.059 40.000 0.00 0.00 41.49 1.73
515 516 7.468496 ACTCTACGGATATACTCCCAATAAGT 58.532 38.462 0.00 0.00 41.49 2.24
516 517 7.949006 ACTCTACGGATATACTCCCAATAAGTT 59.051 37.037 0.00 0.00 41.49 2.66
697 698 3.449042 CGTTCTGCGGAAGACGTC 58.551 61.111 8.61 7.70 46.52 4.34
698 699 1.371267 CGTTCTGCGGAAGACGTCA 60.371 57.895 19.50 0.00 46.52 4.35
699 700 0.937699 CGTTCTGCGGAAGACGTCAA 60.938 55.000 19.50 0.00 46.52 3.18
700 701 1.429463 GTTCTGCGGAAGACGTCAAT 58.571 50.000 19.50 5.89 46.52 2.57
701 702 1.126846 GTTCTGCGGAAGACGTCAATG 59.873 52.381 19.50 5.54 46.52 2.82
702 703 0.317160 TCTGCGGAAGACGTCAATGT 59.683 50.000 19.50 0.00 46.52 2.71
703 704 1.542472 TCTGCGGAAGACGTCAATGTA 59.458 47.619 19.50 3.16 46.52 2.29
704 705 2.165641 TCTGCGGAAGACGTCAATGTAT 59.834 45.455 19.50 0.00 46.52 2.29
705 706 2.267426 TGCGGAAGACGTCAATGTATG 58.733 47.619 19.50 1.66 46.52 2.39
706 707 2.268298 GCGGAAGACGTCAATGTATGT 58.732 47.619 19.50 0.00 46.52 2.29
707 708 2.029244 GCGGAAGACGTCAATGTATGTG 59.971 50.000 19.50 0.00 46.52 3.21
708 709 3.250744 CGGAAGACGTCAATGTATGTGT 58.749 45.455 19.50 0.00 37.93 3.72
709 710 4.417506 CGGAAGACGTCAATGTATGTGTA 58.582 43.478 19.50 0.00 37.93 2.90
710 711 4.499399 CGGAAGACGTCAATGTATGTGTAG 59.501 45.833 19.50 0.00 37.93 2.74
711 712 4.267928 GGAAGACGTCAATGTATGTGTAGC 59.732 45.833 19.50 0.00 0.00 3.58
712 713 4.720649 AGACGTCAATGTATGTGTAGCT 57.279 40.909 19.50 0.00 0.00 3.32
713 714 4.424626 AGACGTCAATGTATGTGTAGCTG 58.575 43.478 19.50 0.00 0.00 4.24
714 715 4.082190 AGACGTCAATGTATGTGTAGCTGT 60.082 41.667 19.50 0.00 0.00 4.40
715 716 5.124936 AGACGTCAATGTATGTGTAGCTGTA 59.875 40.000 19.50 0.00 0.00 2.74
716 717 5.100259 ACGTCAATGTATGTGTAGCTGTAC 58.900 41.667 0.00 0.00 0.00 2.90
717 718 5.099575 CGTCAATGTATGTGTAGCTGTACA 58.900 41.667 0.00 1.26 36.78 2.90
724 725 3.489813 TGTAGCTGTACACTGCACG 57.510 52.632 12.85 0.00 42.33 5.34
725 726 0.671796 TGTAGCTGTACACTGCACGT 59.328 50.000 12.85 0.00 42.33 4.49
726 727 1.881324 TGTAGCTGTACACTGCACGTA 59.119 47.619 12.85 0.00 42.33 3.57
727 728 2.095415 TGTAGCTGTACACTGCACGTAG 60.095 50.000 12.85 0.00 42.33 3.51
728 729 1.244816 AGCTGTACACTGCACGTAGA 58.755 50.000 12.85 0.00 42.33 2.59
821 840 4.628333 GTGTCAAGATCCGACGGAAATAAA 59.372 41.667 22.55 4.05 34.34 1.40
869 888 2.179645 TCCCCATGCCATGATTGGTTAT 59.820 45.455 6.18 0.00 45.57 1.89
921 1178 1.373435 CCCACCGACTAAGGCAACA 59.627 57.895 0.00 0.00 41.41 3.33
925 1182 2.615493 CCACCGACTAAGGCAACAATCT 60.615 50.000 0.00 0.00 41.41 2.40
926 1183 2.673368 CACCGACTAAGGCAACAATCTC 59.327 50.000 0.00 0.00 41.41 2.75
930 1187 1.017387 CTAAGGCAACAATCTCGGCC 58.983 55.000 0.00 0.00 46.77 6.13
945 1209 4.043100 GCCACACCACCTACCCCC 62.043 72.222 0.00 0.00 0.00 5.40
978 1242 2.139917 CGCTGCCTATTTATAACCGCA 58.860 47.619 0.00 0.00 0.00 5.69
1004 1268 1.446907 GCATGTAAGCAGAGCAGTGT 58.553 50.000 0.00 0.00 32.18 3.55
1025 1289 2.110835 TGTCTGCTTGCGCCTCAA 59.889 55.556 4.18 0.00 34.43 3.02
1032 1296 1.421485 CTTGCGCCTCAACGATCAC 59.579 57.895 4.18 0.00 34.06 3.06
1058 1323 2.431057 TCGCCTTCTTCCTCCATCTTAC 59.569 50.000 0.00 0.00 0.00 2.34
1082 1347 2.802816 GCACTGCCGGTATCTAGAATTG 59.197 50.000 1.90 0.00 0.00 2.32
1098 1363 4.930963 AGAATTGTAGATCGAGCACTCAG 58.069 43.478 2.38 0.00 0.00 3.35
1117 1382 3.383185 TCAGGACATCAACAACAAAACCC 59.617 43.478 0.00 0.00 0.00 4.11
1122 1416 4.512484 ACATCAACAACAAAACCCAAAGG 58.488 39.130 0.00 0.00 40.04 3.11
1139 1433 5.246307 CCAAAGGAGGAGTAAACTACCTTG 58.754 45.833 12.97 9.14 35.70 3.61
1140 1434 4.554960 AAGGAGGAGTAAACTACCTTGC 57.445 45.455 12.02 0.00 34.91 4.01
1142 1436 4.944177 AGGAGGAGTAAACTACCTTGCTA 58.056 43.478 0.00 0.00 33.89 3.49
1253 1547 3.371063 GAGCACGTCCCGTCCTCA 61.371 66.667 3.00 0.00 43.25 3.86
1427 1721 4.431131 CCGGGGGTGCTGCTCAAT 62.431 66.667 0.00 0.00 0.00 2.57
1463 1757 3.766691 GTGGAGGCGCGGGTAGAA 61.767 66.667 8.83 0.00 0.00 2.10
1487 1781 1.299850 CACACTGGTCGAGTTCGCA 60.300 57.895 0.00 0.00 39.60 5.10
1740 2047 2.058595 CACCCCGATCTCTTCCGGT 61.059 63.158 0.00 0.00 43.93 5.28
1946 2257 0.878523 CGTTCAGCCGGTTTGAGACA 60.879 55.000 1.90 0.00 0.00 3.41
2297 2616 2.753029 GAGGTGGACAGCTGGCTT 59.247 61.111 21.42 2.52 39.57 4.35
2397 2716 1.966451 CTGTTTCTGGTGCCGTCCC 60.966 63.158 0.00 0.00 0.00 4.46
2519 2864 4.201714 CGTGCGGCTACATATGATTATTGG 60.202 45.833 10.38 0.00 0.00 3.16
2562 2907 3.499918 AGCTTAATCATATCGCCTGCAAC 59.500 43.478 0.00 0.00 0.00 4.17
2563 2908 3.250762 GCTTAATCATATCGCCTGCAACA 59.749 43.478 0.00 0.00 0.00 3.33
2600 2945 5.647589 CATGCATGCATCCAACTATTATCC 58.352 41.667 30.07 0.00 33.90 2.59
2601 2946 4.989277 TGCATGCATCCAACTATTATCCT 58.011 39.130 18.46 0.00 0.00 3.24
2602 2947 5.005740 TGCATGCATCCAACTATTATCCTC 58.994 41.667 18.46 0.00 0.00 3.71
2677 3041 4.691175 TGCTGTACATGCATTTGTTGTTT 58.309 34.783 13.71 0.00 35.31 2.83
2679 3043 5.233902 TGCTGTACATGCATTTGTTGTTTTC 59.766 36.000 13.71 0.00 35.31 2.29
2721 3085 2.734606 TCATGTACTTTTGCTTCGTCCG 59.265 45.455 0.00 0.00 0.00 4.79
2742 3106 2.611722 GGTGCTGTGTTTTGGTTGTTGT 60.612 45.455 0.00 0.00 0.00 3.32
2826 3191 5.728351 TTTCCGTTCTTTTCTGTACTGTG 57.272 39.130 0.00 0.00 0.00 3.66
2828 3193 3.131396 CCGTTCTTTTCTGTACTGTGCT 58.869 45.455 0.00 0.00 0.00 4.40
2829 3194 4.038282 TCCGTTCTTTTCTGTACTGTGCTA 59.962 41.667 0.00 0.00 0.00 3.49
2830 3195 4.150098 CCGTTCTTTTCTGTACTGTGCTAC 59.850 45.833 0.00 0.00 0.00 3.58
2831 3196 4.982916 CGTTCTTTTCTGTACTGTGCTACT 59.017 41.667 0.00 0.00 0.00 2.57
2832 3197 5.107837 CGTTCTTTTCTGTACTGTGCTACTG 60.108 44.000 0.00 0.00 0.00 2.74
2833 3198 5.531122 TCTTTTCTGTACTGTGCTACTGT 57.469 39.130 0.00 0.00 34.59 3.55
2834 3199 5.529791 TCTTTTCTGTACTGTGCTACTGTC 58.470 41.667 0.00 0.00 32.45 3.51
2835 3200 3.936372 TTCTGTACTGTGCTACTGTCC 57.064 47.619 0.00 0.00 32.45 4.02
2836 3201 3.156288 TCTGTACTGTGCTACTGTCCT 57.844 47.619 0.00 0.00 32.45 3.85
2837 3202 3.082548 TCTGTACTGTGCTACTGTCCTC 58.917 50.000 0.00 0.00 32.45 3.71
2838 3203 1.810755 TGTACTGTGCTACTGTCCTCG 59.189 52.381 0.00 0.00 32.45 4.63
2875 3243 0.962489 CGCATACTGTAGCCTAGCCT 59.038 55.000 0.00 0.00 0.00 4.58
2902 3270 7.015195 TGGGAATCAAATCTCGTGATAGATGTA 59.985 37.037 13.00 2.67 36.34 2.29
2916 3284 7.379797 CGTGATAGATGTACAAAATGATCGACT 59.620 37.037 0.00 0.00 0.00 4.18
2973 3341 3.128068 ACGGTCCACTTTTCTTGTGTTTC 59.872 43.478 0.00 0.00 33.92 2.78
3013 3381 2.257207 AGGGTCGTCTGAATTCTTGGA 58.743 47.619 7.05 0.00 0.00 3.53
3018 3386 3.739300 GTCGTCTGAATTCTTGGAACGAA 59.261 43.478 16.70 0.00 0.00 3.85
3036 3405 9.607988 TGGAACGAAGATAGCATTTTCTATTTA 57.392 29.630 0.00 0.00 29.93 1.40
3038 3407 9.865484 GAACGAAGATAGCATTTTCTATTTACC 57.135 33.333 0.00 0.00 29.93 2.85
3061 3430 7.754624 ACCCCTTGTCCAATCAATTTAAAAAT 58.245 30.769 0.00 0.00 0.00 1.82
3093 3462 3.814316 GCTCCTAGGTTTGTTCCCATTGT 60.814 47.826 9.08 0.00 0.00 2.71
3135 3505 1.344438 TGATATGCGACCCCTGTGATC 59.656 52.381 0.00 0.00 0.00 2.92
3137 3507 0.464036 TATGCGACCCCTGTGATCAC 59.536 55.000 19.27 19.27 0.00 3.06
3144 3514 0.107508 CCCCTGTGATCACGAGCAAT 60.108 55.000 20.54 0.00 0.00 3.56
3179 3549 3.252964 CGCAGCCGAATCACAACA 58.747 55.556 0.00 0.00 36.29 3.33
3180 3550 1.573932 CGCAGCCGAATCACAACAA 59.426 52.632 0.00 0.00 36.29 2.83
3181 3551 0.725784 CGCAGCCGAATCACAACAAC 60.726 55.000 0.00 0.00 36.29 3.32
3182 3552 0.310543 GCAGCCGAATCACAACAACA 59.689 50.000 0.00 0.00 0.00 3.33
3183 3553 1.268999 GCAGCCGAATCACAACAACAA 60.269 47.619 0.00 0.00 0.00 2.83
3184 3554 2.384382 CAGCCGAATCACAACAACAAC 58.616 47.619 0.00 0.00 0.00 3.32
3209 3579 5.567138 AAATCCTGTGGAAATTGATCGTC 57.433 39.130 0.00 0.00 34.34 4.20
3220 3590 6.086871 GGAAATTGATCGTCTTTGGAAGTTC 58.913 40.000 0.00 0.00 0.00 3.01
3221 3591 6.072452 GGAAATTGATCGTCTTTGGAAGTTCT 60.072 38.462 2.25 0.00 0.00 3.01
3228 3598 6.119144 TCGTCTTTGGAAGTTCTCAAAAAG 57.881 37.500 15.71 13.50 33.24 2.27
3240 3611 7.089770 AGTTCTCAAAAAGTCTCAAAGGAAC 57.910 36.000 0.00 0.00 0.00 3.62
3242 3613 7.340487 AGTTCTCAAAAAGTCTCAAAGGAACAT 59.660 33.333 0.00 0.00 33.94 2.71
3243 3614 7.645058 TCTCAAAAAGTCTCAAAGGAACATT 57.355 32.000 0.00 0.00 0.00 2.71
3244 3615 7.483307 TCTCAAAAAGTCTCAAAGGAACATTG 58.517 34.615 0.00 0.00 38.51 2.82
3245 3616 6.042143 TCAAAAAGTCTCAAAGGAACATTGC 58.958 36.000 0.00 0.00 36.92 3.56
3246 3617 4.590850 AAAGTCTCAAAGGAACATTGCC 57.409 40.909 0.00 0.00 36.92 4.52
3247 3618 3.228188 AGTCTCAAAGGAACATTGCCA 57.772 42.857 0.00 0.00 36.92 4.92
3263 3651 5.767665 ACATTGCCAGTTTTGTAGACATGTA 59.232 36.000 0.00 0.00 0.00 2.29
3270 3658 8.893727 GCCAGTTTTGTAGACATGTAGAATTAT 58.106 33.333 0.00 0.00 0.00 1.28
3342 3733 8.615211 GTTATTCATGCATGAGAAGTGATGTTA 58.385 33.333 27.25 10.30 38.19 2.41
3399 3790 8.328146 GTTTTTCAAACCTGCTGAACTAATTTC 58.672 33.333 0.00 0.00 32.61 2.17
3404 3795 8.203485 TCAAACCTGCTGAACTAATTTCATTTT 58.797 29.630 0.00 0.00 43.54 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.356673 GGCGACCGGAGTTTTCGT 60.357 61.111 9.46 0.00 35.17 3.85
1 2 3.475774 CGGCGACCGGAGTTTTCG 61.476 66.667 9.46 7.95 44.15 3.46
11 12 2.073037 GATGGAGGAGTACGGCGACC 62.073 65.000 16.62 11.35 0.00 4.79
12 13 1.359475 GATGGAGGAGTACGGCGAC 59.641 63.158 16.62 7.71 0.00 5.19
13 14 2.184830 CGATGGAGGAGTACGGCGA 61.185 63.158 16.62 0.00 0.00 5.54
14 15 2.331805 CGATGGAGGAGTACGGCG 59.668 66.667 4.80 4.80 0.00 6.46
15 16 2.027751 GCGATGGAGGAGTACGGC 59.972 66.667 0.00 0.00 0.00 5.68
16 17 1.797211 GAGGCGATGGAGGAGTACGG 61.797 65.000 0.00 0.00 0.00 4.02
17 18 0.820074 AGAGGCGATGGAGGAGTACG 60.820 60.000 0.00 0.00 0.00 3.67
18 19 0.671251 CAGAGGCGATGGAGGAGTAC 59.329 60.000 0.00 0.00 0.00 2.73
19 20 0.468214 CCAGAGGCGATGGAGGAGTA 60.468 60.000 5.19 0.00 40.51 2.59
20 21 1.760086 CCAGAGGCGATGGAGGAGT 60.760 63.158 5.19 0.00 40.51 3.85
21 22 3.136750 CCAGAGGCGATGGAGGAG 58.863 66.667 5.19 0.00 40.51 3.69
22 23 3.157252 GCCAGAGGCGATGGAGGA 61.157 66.667 14.27 0.00 39.62 3.71
40 41 3.800863 GTCCTCGTCTCTGCGCGA 61.801 66.667 12.10 1.90 35.70 5.87
41 42 4.103103 TGTCCTCGTCTCTGCGCG 62.103 66.667 0.00 0.00 0.00 6.86
42 43 2.505118 GTGTCCTCGTCTCTGCGC 60.505 66.667 0.00 0.00 0.00 6.09
43 44 2.179517 GGTGTCCTCGTCTCTGCG 59.820 66.667 0.00 0.00 0.00 5.18
44 45 1.080434 GTGGTGTCCTCGTCTCTGC 60.080 63.158 0.00 0.00 0.00 4.26
45 46 0.896019 AGGTGGTGTCCTCGTCTCTG 60.896 60.000 0.00 0.00 31.32 3.35
46 47 0.609681 GAGGTGGTGTCCTCGTCTCT 60.610 60.000 0.00 0.00 43.42 3.10
47 48 1.884444 GAGGTGGTGTCCTCGTCTC 59.116 63.158 0.00 0.00 43.42 3.36
48 49 4.098847 GAGGTGGTGTCCTCGTCT 57.901 61.111 0.00 0.00 43.42 4.18
53 54 4.988716 TCGCGGAGGTGGTGTCCT 62.989 66.667 6.13 0.00 40.97 3.85
54 55 3.998672 TTCGCGGAGGTGGTGTCC 61.999 66.667 6.13 0.00 0.00 4.02
55 56 2.737376 GTTCGCGGAGGTGGTGTC 60.737 66.667 6.13 0.00 0.00 3.67
56 57 4.657824 CGTTCGCGGAGGTGGTGT 62.658 66.667 6.13 0.00 36.88 4.16
57 58 3.642778 ATCGTTCGCGGAGGTGGTG 62.643 63.158 6.13 0.00 41.70 4.17
58 59 3.352338 GATCGTTCGCGGAGGTGGT 62.352 63.158 6.13 0.00 41.70 4.16
59 60 2.582498 GATCGTTCGCGGAGGTGG 60.582 66.667 6.13 0.00 41.70 4.61
60 61 1.874019 CAGATCGTTCGCGGAGGTG 60.874 63.158 6.13 0.00 41.70 4.00
61 62 2.341101 ACAGATCGTTCGCGGAGGT 61.341 57.895 6.13 0.00 41.70 3.85
62 63 1.874019 CACAGATCGTTCGCGGAGG 60.874 63.158 6.13 2.47 41.70 4.30
63 64 1.874019 CCACAGATCGTTCGCGGAG 60.874 63.158 6.13 0.00 41.70 4.63
64 65 2.180769 CCACAGATCGTTCGCGGA 59.819 61.111 6.13 0.00 41.70 5.54
65 66 2.126071 ACCACAGATCGTTCGCGG 60.126 61.111 6.13 0.00 41.70 6.46
66 67 1.443702 TGACCACAGATCGTTCGCG 60.444 57.895 0.00 0.00 42.98 5.87
67 68 1.352156 GGTGACCACAGATCGTTCGC 61.352 60.000 0.00 0.00 0.00 4.70
68 69 0.038618 TGGTGACCACAGATCGTTCG 60.039 55.000 0.00 0.00 0.00 3.95
69 70 3.906660 TGGTGACCACAGATCGTTC 57.093 52.632 0.00 0.00 0.00 3.95
80 81 0.323451 GGGGAAGATTGGTGGTGACC 60.323 60.000 0.00 0.00 43.48 4.02
81 82 0.698818 AGGGGAAGATTGGTGGTGAC 59.301 55.000 0.00 0.00 0.00 3.67
82 83 0.991920 GAGGGGAAGATTGGTGGTGA 59.008 55.000 0.00 0.00 0.00 4.02
83 84 0.034089 GGAGGGGAAGATTGGTGGTG 60.034 60.000 0.00 0.00 0.00 4.17
84 85 1.214992 GGGAGGGGAAGATTGGTGGT 61.215 60.000 0.00 0.00 0.00 4.16
85 86 1.214305 TGGGAGGGGAAGATTGGTGG 61.214 60.000 0.00 0.00 0.00 4.61
86 87 0.034089 GTGGGAGGGGAAGATTGGTG 60.034 60.000 0.00 0.00 0.00 4.17
87 88 1.214992 GGTGGGAGGGGAAGATTGGT 61.215 60.000 0.00 0.00 0.00 3.67
88 89 1.214305 TGGTGGGAGGGGAAGATTGG 61.214 60.000 0.00 0.00 0.00 3.16
89 90 0.034089 GTGGTGGGAGGGGAAGATTG 60.034 60.000 0.00 0.00 0.00 2.67
90 91 1.214992 GGTGGTGGGAGGGGAAGATT 61.215 60.000 0.00 0.00 0.00 2.40
91 92 1.619669 GGTGGTGGGAGGGGAAGAT 60.620 63.158 0.00 0.00 0.00 2.40
92 93 2.204090 GGTGGTGGGAGGGGAAGA 60.204 66.667 0.00 0.00 0.00 2.87
93 94 3.717294 CGGTGGTGGGAGGGGAAG 61.717 72.222 0.00 0.00 0.00 3.46
94 95 3.795977 TTCGGTGGTGGGAGGGGAA 62.796 63.158 0.00 0.00 0.00 3.97
95 96 3.795977 TTTCGGTGGTGGGAGGGGA 62.796 63.158 0.00 0.00 0.00 4.81
96 97 2.764637 CTTTTCGGTGGTGGGAGGGG 62.765 65.000 0.00 0.00 0.00 4.79
97 98 1.303317 CTTTTCGGTGGTGGGAGGG 60.303 63.158 0.00 0.00 0.00 4.30
98 99 0.321653 CTCTTTTCGGTGGTGGGAGG 60.322 60.000 0.00 0.00 0.00 4.30
99 100 0.321653 CCTCTTTTCGGTGGTGGGAG 60.322 60.000 0.00 0.00 0.00 4.30
100 101 0.765135 TCCTCTTTTCGGTGGTGGGA 60.765 55.000 0.00 0.00 0.00 4.37
101 102 0.605589 GTCCTCTTTTCGGTGGTGGG 60.606 60.000 0.00 0.00 0.00 4.61
102 103 0.949105 CGTCCTCTTTTCGGTGGTGG 60.949 60.000 0.00 0.00 0.00 4.61
103 104 0.032952 TCGTCCTCTTTTCGGTGGTG 59.967 55.000 0.00 0.00 0.00 4.17
104 105 0.754472 TTCGTCCTCTTTTCGGTGGT 59.246 50.000 0.00 0.00 0.00 4.16
105 106 1.873698 TTTCGTCCTCTTTTCGGTGG 58.126 50.000 0.00 0.00 0.00 4.61
106 107 3.326747 AGATTTCGTCCTCTTTTCGGTG 58.673 45.455 0.00 0.00 0.00 4.94
107 108 3.679824 AGATTTCGTCCTCTTTTCGGT 57.320 42.857 0.00 0.00 0.00 4.69
108 109 4.585619 GAAGATTTCGTCCTCTTTTCGG 57.414 45.455 0.00 0.00 31.99 4.30
121 122 6.183360 CCACAAAACCCTAGATCGAAGATTTC 60.183 42.308 0.00 0.00 45.12 2.17
122 123 5.648092 CCACAAAACCCTAGATCGAAGATTT 59.352 40.000 0.00 0.00 45.12 2.17
123 124 5.186198 CCACAAAACCCTAGATCGAAGATT 58.814 41.667 0.00 0.00 45.12 2.40
124 125 4.770795 CCACAAAACCCTAGATCGAAGAT 58.229 43.478 0.00 0.00 45.12 2.40
125 126 3.618997 GCCACAAAACCCTAGATCGAAGA 60.619 47.826 0.00 0.00 45.75 2.87
126 127 2.678336 GCCACAAAACCCTAGATCGAAG 59.322 50.000 0.00 0.00 0.00 3.79
127 128 2.706890 GCCACAAAACCCTAGATCGAA 58.293 47.619 0.00 0.00 0.00 3.71
128 129 1.404986 CGCCACAAAACCCTAGATCGA 60.405 52.381 0.00 0.00 0.00 3.59
129 130 1.006832 CGCCACAAAACCCTAGATCG 58.993 55.000 0.00 0.00 0.00 3.69
130 131 0.733150 GCGCCACAAAACCCTAGATC 59.267 55.000 0.00 0.00 0.00 2.75
131 132 0.679960 GGCGCCACAAAACCCTAGAT 60.680 55.000 24.80 0.00 0.00 1.98
132 133 1.302993 GGCGCCACAAAACCCTAGA 60.303 57.895 24.80 0.00 0.00 2.43
133 134 1.303317 AGGCGCCACAAAACCCTAG 60.303 57.895 31.54 0.00 0.00 3.02
134 135 1.302993 GAGGCGCCACAAAACCCTA 60.303 57.895 31.54 0.00 0.00 3.53
135 136 2.597510 GAGGCGCCACAAAACCCT 60.598 61.111 31.54 3.33 0.00 4.34
136 137 3.680786 GGAGGCGCCACAAAACCC 61.681 66.667 31.54 13.30 36.34 4.11
137 138 3.680786 GGGAGGCGCCACAAAACC 61.681 66.667 31.54 19.71 38.95 3.27
138 139 2.022240 TTTGGGAGGCGCCACAAAAC 62.022 55.000 29.47 16.89 38.95 2.43
139 140 1.743321 CTTTGGGAGGCGCCACAAAA 61.743 55.000 30.33 25.14 36.80 2.44
140 141 2.123683 TTTGGGAGGCGCCACAAA 60.124 55.556 31.54 29.66 38.95 2.83
141 142 2.424842 ATCTTTGGGAGGCGCCACAA 62.425 55.000 31.54 25.95 38.95 3.33
142 143 2.905996 ATCTTTGGGAGGCGCCACA 61.906 57.895 31.54 21.54 38.95 4.17
143 144 2.044946 ATCTTTGGGAGGCGCCAC 60.045 61.111 31.54 23.95 38.95 5.01
144 145 2.045045 CATCTTTGGGAGGCGCCA 60.045 61.111 31.54 4.11 38.95 5.69
145 146 2.830370 CCATCTTTGGGAGGCGCC 60.830 66.667 21.89 21.89 39.56 6.53
153 154 1.188863 CTGCCCTTTCCCATCTTTGG 58.811 55.000 0.00 0.00 43.23 3.28
154 155 0.533951 GCTGCCCTTTCCCATCTTTG 59.466 55.000 0.00 0.00 0.00 2.77
155 156 0.411058 AGCTGCCCTTTCCCATCTTT 59.589 50.000 0.00 0.00 0.00 2.52
156 157 0.411058 AAGCTGCCCTTTCCCATCTT 59.589 50.000 0.00 0.00 0.00 2.40
157 158 0.033699 GAAGCTGCCCTTTCCCATCT 60.034 55.000 0.00 0.00 32.78 2.90
158 159 0.033699 AGAAGCTGCCCTTTCCCATC 60.034 55.000 0.00 0.00 32.78 3.51
159 160 1.213926 CTAGAAGCTGCCCTTTCCCAT 59.786 52.381 0.00 0.00 32.78 4.00
160 161 0.620556 CTAGAAGCTGCCCTTTCCCA 59.379 55.000 0.00 0.00 32.78 4.37
161 162 0.106967 CCTAGAAGCTGCCCTTTCCC 60.107 60.000 0.00 0.00 32.78 3.97
162 163 0.621082 ACCTAGAAGCTGCCCTTTCC 59.379 55.000 0.00 0.00 32.78 3.13
163 164 1.279271 TGACCTAGAAGCTGCCCTTTC 59.721 52.381 0.00 0.00 32.78 2.62
164 165 1.362224 TGACCTAGAAGCTGCCCTTT 58.638 50.000 0.00 0.00 32.78 3.11
165 166 1.280421 CTTGACCTAGAAGCTGCCCTT 59.720 52.381 0.00 0.00 36.19 3.95
166 167 0.908198 CTTGACCTAGAAGCTGCCCT 59.092 55.000 0.00 0.00 0.00 5.19
167 168 0.905357 TCTTGACCTAGAAGCTGCCC 59.095 55.000 0.00 0.00 0.00 5.36
168 169 2.770164 TTCTTGACCTAGAAGCTGCC 57.230 50.000 0.00 0.00 30.87 4.85
169 170 2.941720 CCATTCTTGACCTAGAAGCTGC 59.058 50.000 0.00 0.00 37.55 5.25
170 171 3.539604 CCCATTCTTGACCTAGAAGCTG 58.460 50.000 0.00 0.00 37.55 4.24
171 172 2.507471 CCCCATTCTTGACCTAGAAGCT 59.493 50.000 0.00 0.00 37.55 3.74
172 173 2.924421 CCCCATTCTTGACCTAGAAGC 58.076 52.381 0.00 0.00 37.55 3.86
173 174 2.743183 CGCCCCATTCTTGACCTAGAAG 60.743 54.545 0.00 0.00 37.55 2.85
174 175 1.209504 CGCCCCATTCTTGACCTAGAA 59.790 52.381 0.00 0.00 38.43 2.10
175 176 0.830648 CGCCCCATTCTTGACCTAGA 59.169 55.000 0.00 0.00 0.00 2.43
176 177 0.830648 TCGCCCCATTCTTGACCTAG 59.169 55.000 0.00 0.00 0.00 3.02
177 178 0.830648 CTCGCCCCATTCTTGACCTA 59.169 55.000 0.00 0.00 0.00 3.08
178 179 1.604378 CTCGCCCCATTCTTGACCT 59.396 57.895 0.00 0.00 0.00 3.85
179 180 2.115291 GCTCGCCCCATTCTTGACC 61.115 63.158 0.00 0.00 0.00 4.02
180 181 2.115291 GGCTCGCCCCATTCTTGAC 61.115 63.158 0.00 0.00 0.00 3.18
181 182 2.272146 GGCTCGCCCCATTCTTGA 59.728 61.111 0.00 0.00 0.00 3.02
182 183 3.204827 CGGCTCGCCCCATTCTTG 61.205 66.667 1.72 0.00 0.00 3.02
198 199 3.546714 AAAAGTCCCACCCCGAGCG 62.547 63.158 0.00 0.00 0.00 5.03
199 200 1.971695 CAAAAGTCCCACCCCGAGC 60.972 63.158 0.00 0.00 0.00 5.03
200 201 0.688487 TACAAAAGTCCCACCCCGAG 59.312 55.000 0.00 0.00 0.00 4.63
201 202 0.688487 CTACAAAAGTCCCACCCCGA 59.312 55.000 0.00 0.00 0.00 5.14
202 203 0.399075 ACTACAAAAGTCCCACCCCG 59.601 55.000 0.00 0.00 30.33 5.73
211 212 3.391049 GTTGCGAGAGGACTACAAAAGT 58.609 45.455 0.00 0.00 42.80 2.66
212 213 2.737252 GGTTGCGAGAGGACTACAAAAG 59.263 50.000 0.00 0.00 0.00 2.27
213 214 2.103432 TGGTTGCGAGAGGACTACAAAA 59.897 45.455 0.00 0.00 0.00 2.44
214 215 1.689813 TGGTTGCGAGAGGACTACAAA 59.310 47.619 0.00 0.00 0.00 2.83
215 216 1.272490 CTGGTTGCGAGAGGACTACAA 59.728 52.381 0.00 0.00 0.00 2.41
216 217 0.888619 CTGGTTGCGAGAGGACTACA 59.111 55.000 0.00 0.00 0.00 2.74
217 218 0.458716 GCTGGTTGCGAGAGGACTAC 60.459 60.000 0.00 0.00 0.00 2.73
218 219 1.605058 GGCTGGTTGCGAGAGGACTA 61.605 60.000 0.00 0.00 44.05 2.59
219 220 2.659610 GCTGGTTGCGAGAGGACT 59.340 61.111 0.00 0.00 0.00 3.85
220 221 2.435059 GGCTGGTTGCGAGAGGAC 60.435 66.667 0.00 0.00 44.05 3.85
221 222 2.604686 AGGCTGGTTGCGAGAGGA 60.605 61.111 0.00 0.00 44.05 3.71
222 223 2.125350 GAGGCTGGTTGCGAGAGG 60.125 66.667 0.00 0.00 44.05 3.69
223 224 2.125350 GGAGGCTGGTTGCGAGAG 60.125 66.667 0.00 0.00 44.05 3.20
224 225 2.922503 TGGAGGCTGGTTGCGAGA 60.923 61.111 0.00 0.00 44.05 4.04
225 226 2.743928 GTGGAGGCTGGTTGCGAG 60.744 66.667 0.00 0.00 44.05 5.03
226 227 4.680237 CGTGGAGGCTGGTTGCGA 62.680 66.667 0.00 0.00 44.05 5.10
229 230 3.925630 ATGGCGTGGAGGCTGGTTG 62.926 63.158 0.00 0.00 46.88 3.77
230 231 3.650950 ATGGCGTGGAGGCTGGTT 61.651 61.111 0.00 0.00 46.88 3.67
231 232 4.415150 CATGGCGTGGAGGCTGGT 62.415 66.667 0.00 0.00 46.88 4.00
240 241 4.935495 CGGGGGATCCATGGCGTG 62.935 72.222 15.23 0.00 34.36 5.34
242 243 3.612247 GATCGGGGGATCCATGGCG 62.612 68.421 15.23 3.59 34.36 5.69
243 244 2.190488 GAGATCGGGGGATCCATGGC 62.190 65.000 15.23 0.00 34.36 4.40
244 245 1.557269 GGAGATCGGGGGATCCATGG 61.557 65.000 15.23 4.97 34.36 3.66
245 246 0.837691 TGGAGATCGGGGGATCCATG 60.838 60.000 15.23 2.15 36.92 3.66
246 247 0.119968 ATGGAGATCGGGGGATCCAT 59.880 55.000 15.23 6.18 45.23 3.41
247 248 0.545309 GATGGAGATCGGGGGATCCA 60.545 60.000 15.23 1.93 45.48 3.41
248 249 1.268283 GGATGGAGATCGGGGGATCC 61.268 65.000 1.92 1.92 32.22 3.36
249 250 0.545309 TGGATGGAGATCGGGGGATC 60.545 60.000 0.00 0.00 0.00 3.36
250 251 0.838122 GTGGATGGAGATCGGGGGAT 60.838 60.000 0.00 0.00 0.00 3.85
251 252 1.459539 GTGGATGGAGATCGGGGGA 60.460 63.158 0.00 0.00 0.00 4.81
252 253 2.872388 CGTGGATGGAGATCGGGGG 61.872 68.421 0.00 0.00 0.00 5.40
253 254 2.134287 ACGTGGATGGAGATCGGGG 61.134 63.158 0.00 0.00 0.00 5.73
254 255 1.068083 CACGTGGATGGAGATCGGG 59.932 63.158 7.95 0.00 0.00 5.14
255 256 1.068083 CCACGTGGATGGAGATCGG 59.932 63.158 31.31 0.00 43.02 4.18
256 257 1.592669 GCCACGTGGATGGAGATCG 60.593 63.158 38.30 7.80 43.02 3.69
257 258 1.227674 GGCCACGTGGATGGAGATC 60.228 63.158 38.30 16.97 43.02 2.75
258 259 1.995066 TGGCCACGTGGATGGAGAT 60.995 57.895 38.30 0.00 43.02 2.75
259 260 2.606213 TGGCCACGTGGATGGAGA 60.606 61.111 38.30 10.92 43.02 3.71
260 261 2.436646 GTGGCCACGTGGATGGAG 60.437 66.667 38.30 10.99 43.02 3.86
261 262 4.028490 GGTGGCCACGTGGATGGA 62.028 66.667 38.30 14.66 43.02 3.41
262 263 3.643595 ATGGTGGCCACGTGGATGG 62.644 63.158 38.30 12.59 43.26 3.51
263 264 2.045045 ATGGTGGCCACGTGGATG 60.045 61.111 38.30 12.61 35.80 3.51
264 265 2.272146 GATGGTGGCCACGTGGAT 59.728 61.111 38.30 21.73 35.80 3.41
265 266 4.028490 GGATGGTGGCCACGTGGA 62.028 66.667 38.30 17.51 35.80 4.02
266 267 4.343323 TGGATGGTGGCCACGTGG 62.343 66.667 30.66 30.66 35.80 4.94
267 268 3.055719 GTGGATGGTGGCCACGTG 61.056 66.667 29.08 9.08 45.50 4.49
292 293 4.489771 CAGGGATGCGGTGGGGTC 62.490 72.222 0.00 0.00 0.00 4.46
294 295 4.802051 CACAGGGATGCGGTGGGG 62.802 72.222 0.53 0.00 0.00 4.96
302 303 3.687321 CTGGGTCCGCACAGGGATG 62.687 68.421 0.00 0.00 42.28 3.51
303 304 3.402681 CTGGGTCCGCACAGGGAT 61.403 66.667 0.00 0.00 42.28 3.85
307 308 2.124983 CATCCTGGGTCCGCACAG 60.125 66.667 0.00 0.00 45.48 3.66
308 309 4.408821 GCATCCTGGGTCCGCACA 62.409 66.667 0.00 0.00 0.00 4.57
321 322 3.564218 ATCTCGGGCCCAGGCATC 61.564 66.667 24.92 1.05 44.11 3.91
322 323 3.882326 CATCTCGGGCCCAGGCAT 61.882 66.667 24.92 4.45 44.11 4.40
330 331 3.942439 GGGTAGGGCATCTCGGGC 61.942 72.222 0.00 0.00 0.00 6.13
331 332 3.616721 CGGGTAGGGCATCTCGGG 61.617 72.222 0.00 0.00 0.00 5.14
332 333 4.301027 GCGGGTAGGGCATCTCGG 62.301 72.222 0.00 0.00 0.00 4.63
333 334 3.536917 TGCGGGTAGGGCATCTCG 61.537 66.667 0.00 0.00 35.04 4.04
334 335 2.109181 GTGCGGGTAGGGCATCTC 59.891 66.667 0.00 0.00 43.19 2.75
335 336 3.480133 GGTGCGGGTAGGGCATCT 61.480 66.667 0.00 0.00 43.19 2.90
336 337 3.757248 CTGGTGCGGGTAGGGCATC 62.757 68.421 0.00 0.00 43.19 3.91
337 338 3.797353 CTGGTGCGGGTAGGGCAT 61.797 66.667 0.00 0.00 43.19 4.40
349 350 4.838152 CATCCGGTCGGCCTGGTG 62.838 72.222 15.02 6.58 34.68 4.17
352 353 4.552365 ATGCATCCGGTCGGCCTG 62.552 66.667 3.66 0.00 34.68 4.85
353 354 4.552365 CATGCATCCGGTCGGCCT 62.552 66.667 3.66 0.00 34.68 5.19
356 357 3.576356 GTGCATGCATCCGGTCGG 61.576 66.667 25.64 2.52 0.00 4.79
357 358 2.512286 AGTGCATGCATCCGGTCG 60.512 61.111 25.64 0.00 0.00 4.79
358 359 2.182842 GGAGTGCATGCATCCGGTC 61.183 63.158 25.64 14.76 0.00 4.79
359 360 2.124570 GGAGTGCATGCATCCGGT 60.125 61.111 25.64 6.41 0.00 5.28
391 392 1.076332 GGTACAGATGAACGTGCCAC 58.924 55.000 0.00 0.00 37.77 5.01
392 393 0.389296 CGGTACAGATGAACGTGCCA 60.389 55.000 0.00 0.00 37.72 4.92
393 394 0.108992 TCGGTACAGATGAACGTGCC 60.109 55.000 0.00 0.00 34.83 5.01
394 395 0.989890 GTCGGTACAGATGAACGTGC 59.010 55.000 0.00 0.00 0.00 5.34
395 396 1.256652 CGTCGGTACAGATGAACGTG 58.743 55.000 9.37 0.00 0.00 4.49
396 397 0.169672 CCGTCGGTACAGATGAACGT 59.830 55.000 15.77 0.00 0.00 3.99
397 398 0.448990 TCCGTCGGTACAGATGAACG 59.551 55.000 15.77 7.29 0.00 3.95
398 399 2.865343 ATCCGTCGGTACAGATGAAC 57.135 50.000 15.77 0.00 0.00 3.18
399 400 3.446161 AGAAATCCGTCGGTACAGATGAA 59.554 43.478 15.77 0.00 0.00 2.57
400 401 3.021695 AGAAATCCGTCGGTACAGATGA 58.978 45.455 15.77 8.41 0.00 2.92
401 402 3.181490 TGAGAAATCCGTCGGTACAGATG 60.181 47.826 11.88 8.13 0.00 2.90
402 403 3.021695 TGAGAAATCCGTCGGTACAGAT 58.978 45.455 11.88 0.00 0.00 2.90
403 404 2.163010 GTGAGAAATCCGTCGGTACAGA 59.837 50.000 11.88 0.00 0.00 3.41
404 405 2.527100 GTGAGAAATCCGTCGGTACAG 58.473 52.381 11.88 0.00 0.00 2.74
405 406 1.203052 GGTGAGAAATCCGTCGGTACA 59.797 52.381 11.88 0.00 0.00 2.90
406 407 1.796617 CGGTGAGAAATCCGTCGGTAC 60.797 57.143 11.88 1.71 41.58 3.34
407 408 0.452987 CGGTGAGAAATCCGTCGGTA 59.547 55.000 11.88 0.00 41.58 4.02
408 409 1.214589 CGGTGAGAAATCCGTCGGT 59.785 57.895 11.88 0.00 41.58 4.69
409 410 1.518572 CCGGTGAGAAATCCGTCGG 60.519 63.158 4.39 4.39 44.51 4.79
410 411 0.108992 TTCCGGTGAGAAATCCGTCG 60.109 55.000 0.00 0.00 44.51 5.12
411 412 2.202566 GATTCCGGTGAGAAATCCGTC 58.797 52.381 0.00 0.00 44.51 4.79
412 413 1.134491 GGATTCCGGTGAGAAATCCGT 60.134 52.381 14.22 0.00 44.51 4.69
413 414 1.583054 GGATTCCGGTGAGAAATCCG 58.417 55.000 14.22 0.00 45.42 4.18
414 415 1.583054 CGGATTCCGGTGAGAAATCC 58.417 55.000 17.53 17.87 44.15 3.01
415 416 3.060602 GATCGGATTCCGGTGAGAAATC 58.939 50.000 24.15 13.81 42.08 2.17
416 417 2.545952 CGATCGGATTCCGGTGAGAAAT 60.546 50.000 24.15 8.94 42.08 2.17
417 418 1.202371 CGATCGGATTCCGGTGAGAAA 60.202 52.381 24.15 4.05 42.08 2.52
418 419 0.384309 CGATCGGATTCCGGTGAGAA 59.616 55.000 24.15 4.81 42.08 2.87
419 420 2.030551 CGATCGGATTCCGGTGAGA 58.969 57.895 24.15 5.57 42.08 3.27
420 421 1.661821 GCGATCGGATTCCGGTGAG 60.662 63.158 24.15 14.48 42.08 3.51
421 422 2.415843 GCGATCGGATTCCGGTGA 59.584 61.111 24.15 6.35 42.08 4.02
422 423 2.947118 TTCGCGATCGGATTCCGGTG 62.947 60.000 24.15 14.80 42.08 4.94
423 424 2.777972 TTCGCGATCGGATTCCGGT 61.778 57.895 24.15 18.63 46.09 5.28
426 427 0.529992 AAGGTTCGCGATCGGATTCC 60.530 55.000 18.30 15.66 36.13 3.01
427 428 0.577269 CAAGGTTCGCGATCGGATTC 59.423 55.000 18.30 8.51 36.13 2.52
428 429 0.810031 CCAAGGTTCGCGATCGGATT 60.810 55.000 18.30 2.32 36.13 3.01
429 430 1.227263 CCAAGGTTCGCGATCGGAT 60.227 57.895 18.30 0.00 36.13 4.18
430 431 2.183300 CCAAGGTTCGCGATCGGA 59.817 61.111 18.30 9.68 36.13 4.55
431 432 3.564027 GCCAAGGTTCGCGATCGG 61.564 66.667 18.30 7.44 36.13 4.18
437 438 1.154035 CCATTTCGCCAAGGTTCGC 60.154 57.895 0.00 0.00 0.00 4.70
438 439 1.154035 GCCATTTCGCCAAGGTTCG 60.154 57.895 0.00 0.00 0.00 3.95
439 440 0.532115 ATGCCATTTCGCCAAGGTTC 59.468 50.000 0.00 0.00 0.00 3.62
440 441 0.247185 CATGCCATTTCGCCAAGGTT 59.753 50.000 0.00 0.00 0.00 3.50
441 442 1.892338 CATGCCATTTCGCCAAGGT 59.108 52.632 0.00 0.00 0.00 3.50
442 443 1.519898 GCATGCCATTTCGCCAAGG 60.520 57.895 6.36 0.00 0.00 3.61
443 444 1.874915 CGCATGCCATTTCGCCAAG 60.875 57.895 13.15 0.00 0.00 3.61
444 445 1.871126 TTCGCATGCCATTTCGCCAA 61.871 50.000 13.15 0.00 0.00 4.52
445 446 2.268988 CTTCGCATGCCATTTCGCCA 62.269 55.000 13.15 0.00 0.00 5.69
446 447 1.587088 CTTCGCATGCCATTTCGCC 60.587 57.895 13.15 0.00 0.00 5.54
447 448 1.587088 CCTTCGCATGCCATTTCGC 60.587 57.895 13.15 0.00 0.00 4.70
448 449 0.248215 GTCCTTCGCATGCCATTTCG 60.248 55.000 13.15 0.00 0.00 3.46
449 450 0.810648 TGTCCTTCGCATGCCATTTC 59.189 50.000 13.15 0.00 0.00 2.17
450 451 1.135527 CATGTCCTTCGCATGCCATTT 59.864 47.619 13.15 0.00 37.50 2.32
451 452 0.742505 CATGTCCTTCGCATGCCATT 59.257 50.000 13.15 0.00 37.50 3.16
452 453 0.107066 TCATGTCCTTCGCATGCCAT 60.107 50.000 13.15 5.54 42.34 4.40
453 454 0.107066 ATCATGTCCTTCGCATGCCA 60.107 50.000 13.15 3.00 42.34 4.92
454 455 0.590195 GATCATGTCCTTCGCATGCC 59.410 55.000 13.15 0.00 42.34 4.40
455 456 1.263484 CAGATCATGTCCTTCGCATGC 59.737 52.381 7.91 7.91 42.34 4.06
456 457 1.871676 CCAGATCATGTCCTTCGCATG 59.128 52.381 0.00 0.00 43.55 4.06
457 458 1.813092 GCCAGATCATGTCCTTCGCAT 60.813 52.381 0.00 0.00 0.00 4.73
458 459 0.462581 GCCAGATCATGTCCTTCGCA 60.463 55.000 0.00 0.00 0.00 5.10
459 460 1.162800 GGCCAGATCATGTCCTTCGC 61.163 60.000 0.00 0.00 0.00 4.70
460 461 0.877649 CGGCCAGATCATGTCCTTCG 60.878 60.000 2.24 0.00 0.00 3.79
461 462 0.465705 TCGGCCAGATCATGTCCTTC 59.534 55.000 2.24 0.00 0.00 3.46
462 463 1.135094 ATCGGCCAGATCATGTCCTT 58.865 50.000 2.24 0.00 33.45 3.36
463 464 2.015456 TATCGGCCAGATCATGTCCT 57.985 50.000 12.43 0.00 40.66 3.85
464 465 2.419297 GGATATCGGCCAGATCATGTCC 60.419 54.545 12.43 11.86 40.66 4.02
465 466 2.234661 TGGATATCGGCCAGATCATGTC 59.765 50.000 12.43 7.92 40.66 3.06
466 467 2.027745 GTGGATATCGGCCAGATCATGT 60.028 50.000 12.43 0.58 40.66 3.21
467 468 2.235650 AGTGGATATCGGCCAGATCATG 59.764 50.000 12.43 0.00 40.66 3.07
468 469 2.544721 AGTGGATATCGGCCAGATCAT 58.455 47.619 12.43 6.39 40.66 2.45
469 470 2.015456 AGTGGATATCGGCCAGATCA 57.985 50.000 12.43 4.01 40.66 2.92
470 471 3.511934 AGTAAGTGGATATCGGCCAGATC 59.488 47.826 12.43 6.66 40.66 2.75
471 472 3.511477 AGTAAGTGGATATCGGCCAGAT 58.489 45.455 2.24 9.46 43.19 2.90
472 473 2.891580 GAGTAAGTGGATATCGGCCAGA 59.108 50.000 2.24 0.78 35.77 3.86
473 474 2.894126 AGAGTAAGTGGATATCGGCCAG 59.106 50.000 2.24 0.00 35.77 4.85
474 475 2.958818 AGAGTAAGTGGATATCGGCCA 58.041 47.619 2.24 0.00 0.00 5.36
475 476 3.119919 CGTAGAGTAAGTGGATATCGGCC 60.120 52.174 0.00 0.00 0.00 6.13
476 477 3.119919 CCGTAGAGTAAGTGGATATCGGC 60.120 52.174 0.00 0.00 0.00 5.54
477 478 4.321718 TCCGTAGAGTAAGTGGATATCGG 58.678 47.826 0.00 0.00 36.30 4.18
478 479 7.789273 ATATCCGTAGAGTAAGTGGATATCG 57.211 40.000 6.30 0.00 44.98 2.92
479 480 9.835389 AGTATATCCGTAGAGTAAGTGGATATC 57.165 37.037 13.68 0.00 44.98 1.63
481 482 8.263640 GGAGTATATCCGTAGAGTAAGTGGATA 58.736 40.741 2.08 2.08 43.67 2.59
482 483 7.111466 GGAGTATATCCGTAGAGTAAGTGGAT 58.889 42.308 0.00 0.00 42.00 3.41
483 484 6.471146 GGAGTATATCCGTAGAGTAAGTGGA 58.529 44.000 0.00 0.00 38.67 4.02
484 485 6.740411 GGAGTATATCCGTAGAGTAAGTGG 57.260 45.833 0.00 0.00 38.67 4.00
680 681 0.937699 TTGACGTCTTCCGCAGAACG 60.938 55.000 17.92 0.00 41.42 3.95
681 682 1.126846 CATTGACGTCTTCCGCAGAAC 59.873 52.381 17.92 0.00 41.42 3.01
682 683 1.270094 ACATTGACGTCTTCCGCAGAA 60.270 47.619 17.92 0.00 41.42 3.02
683 684 0.317160 ACATTGACGTCTTCCGCAGA 59.683 50.000 17.92 0.00 41.42 4.26
684 685 1.990799 TACATTGACGTCTTCCGCAG 58.009 50.000 17.92 2.48 41.42 5.18
685 686 2.267426 CATACATTGACGTCTTCCGCA 58.733 47.619 17.92 0.00 41.42 5.69
686 687 2.029244 CACATACATTGACGTCTTCCGC 59.971 50.000 17.92 0.00 41.42 5.54
687 688 3.250744 ACACATACATTGACGTCTTCCG 58.749 45.455 17.92 5.27 44.03 4.30
688 689 4.267928 GCTACACATACATTGACGTCTTCC 59.732 45.833 17.92 0.00 0.00 3.46
689 690 5.004821 CAGCTACACATACATTGACGTCTTC 59.995 44.000 17.92 0.00 0.00 2.87
690 691 4.864806 CAGCTACACATACATTGACGTCTT 59.135 41.667 17.92 1.03 0.00 3.01
691 692 4.082190 ACAGCTACACATACATTGACGTCT 60.082 41.667 17.92 0.00 0.00 4.18
692 693 4.174009 ACAGCTACACATACATTGACGTC 58.826 43.478 9.11 9.11 0.00 4.34
693 694 4.188247 ACAGCTACACATACATTGACGT 57.812 40.909 0.00 0.00 0.00 4.34
694 695 5.099575 TGTACAGCTACACATACATTGACG 58.900 41.667 0.00 0.00 0.00 4.35
706 707 0.671796 ACGTGCAGTGTACAGCTACA 59.328 50.000 12.06 2.34 0.00 2.74
707 708 2.161012 TCTACGTGCAGTGTACAGCTAC 59.839 50.000 12.06 4.74 0.00 3.58
708 709 2.429478 TCTACGTGCAGTGTACAGCTA 58.571 47.619 12.06 0.00 0.00 3.32
709 710 1.244816 TCTACGTGCAGTGTACAGCT 58.755 50.000 12.06 1.06 0.00 4.24
710 711 2.279582 ATCTACGTGCAGTGTACAGC 57.720 50.000 12.06 0.00 0.00 4.40
711 712 4.096311 GTGTATCTACGTGCAGTGTACAG 58.904 47.826 12.06 6.87 31.81 2.74
712 713 3.425227 CGTGTATCTACGTGCAGTGTACA 60.425 47.826 12.06 0.00 39.13 2.90
713 714 3.096461 CGTGTATCTACGTGCAGTGTAC 58.904 50.000 0.00 0.56 39.13 2.90
714 715 2.096335 CCGTGTATCTACGTGCAGTGTA 59.904 50.000 0.00 0.00 42.24 2.90
715 716 1.135489 CCGTGTATCTACGTGCAGTGT 60.135 52.381 0.00 0.00 42.24 3.55
716 717 1.545759 CCGTGTATCTACGTGCAGTG 58.454 55.000 0.00 0.00 42.24 3.66
717 718 0.179145 GCCGTGTATCTACGTGCAGT 60.179 55.000 0.00 0.00 42.24 4.40
718 719 1.200474 CGCCGTGTATCTACGTGCAG 61.200 60.000 0.00 0.00 42.24 4.41
719 720 1.226463 CGCCGTGTATCTACGTGCA 60.226 57.895 0.00 0.00 42.24 4.57
720 721 2.574222 GCGCCGTGTATCTACGTGC 61.574 63.158 0.00 0.00 42.24 5.34
721 722 0.799152 TTGCGCCGTGTATCTACGTG 60.799 55.000 4.18 0.00 42.24 4.49
722 723 0.799534 GTTGCGCCGTGTATCTACGT 60.800 55.000 4.18 0.00 42.24 3.57
723 724 0.524816 AGTTGCGCCGTGTATCTACG 60.525 55.000 4.18 0.00 43.35 3.51
724 725 0.921347 CAGTTGCGCCGTGTATCTAC 59.079 55.000 4.18 0.00 0.00 2.59
725 726 0.812549 TCAGTTGCGCCGTGTATCTA 59.187 50.000 4.18 0.00 0.00 1.98
726 727 0.736325 GTCAGTTGCGCCGTGTATCT 60.736 55.000 4.18 0.00 0.00 1.98
727 728 1.693083 GGTCAGTTGCGCCGTGTATC 61.693 60.000 4.18 0.00 0.00 2.24
728 729 1.740296 GGTCAGTTGCGCCGTGTAT 60.740 57.895 4.18 0.00 0.00 2.29
821 840 3.041940 GTTGTGCGGCGCAGTAGT 61.042 61.111 37.27 0.00 40.08 2.73
869 888 2.897271 ACCTGTTGGTGATATTGGCA 57.103 45.000 0.00 0.00 46.51 4.92
921 1178 0.907704 TAGGTGGTGTGGCCGAGATT 60.908 55.000 0.00 0.00 41.21 2.40
925 1182 3.315949 GGTAGGTGGTGTGGCCGA 61.316 66.667 0.00 0.00 41.21 5.54
926 1183 4.404098 GGGTAGGTGGTGTGGCCG 62.404 72.222 0.00 0.00 41.21 6.13
930 1187 1.683441 GAAGGGGGTAGGTGGTGTG 59.317 63.158 0.00 0.00 0.00 3.82
978 1242 1.221840 CTGCTTACATGCCCGGAGT 59.778 57.895 0.73 0.00 0.00 3.85
1032 1296 0.031449 GGAGGAAGAAGGCGATCGAG 59.969 60.000 21.57 0.00 0.00 4.04
1058 1323 0.595053 CTAGATACCGGCAGTGCACG 60.595 60.000 18.61 17.17 0.00 5.34
1082 1347 2.017782 TGTCCTGAGTGCTCGATCTAC 58.982 52.381 0.00 0.00 0.00 2.59
1098 1363 3.810310 TGGGTTTTGTTGTTGATGTCC 57.190 42.857 0.00 0.00 0.00 4.02
1117 1382 4.695928 GCAAGGTAGTTTACTCCTCCTTTG 59.304 45.833 9.59 7.87 33.08 2.77
1122 1416 4.403113 AGCTAGCAAGGTAGTTTACTCCTC 59.597 45.833 18.83 0.00 0.00 3.71
1140 1434 4.286320 CACCGGCCGGCTAGCTAG 62.286 72.222 43.58 20.14 39.32 3.42
1149 1443 2.280389 CTCCATGATCACCGGCCG 60.280 66.667 21.04 21.04 0.00 6.13
1150 1444 2.111878 CCTCCATGATCACCGGCC 59.888 66.667 0.00 0.00 0.00 6.13
1253 1547 2.795175 ACGTGATCTTGTCGAACACT 57.205 45.000 0.00 0.00 41.67 3.55
1457 1751 1.299976 CAGTGTGGCCCCTTCTACC 59.700 63.158 0.00 0.00 0.00 3.18
1460 1754 2.450502 ACCAGTGTGGCCCCTTCT 60.451 61.111 0.00 0.00 42.67 2.85
1463 1757 4.954118 TCGACCAGTGTGGCCCCT 62.954 66.667 0.00 0.00 42.67 4.79
1631 1925 1.672356 GAAGTCGCTGGTGGCATGT 60.672 57.895 0.00 0.00 41.91 3.21
1864 2175 1.211703 TGAAGTCCTTGGTGAAGTGCA 59.788 47.619 0.00 0.00 0.00 4.57
2519 2864 4.972440 GCTCAAATCGCTGATTTAATCACC 59.028 41.667 3.20 0.00 39.82 4.02
2588 2933 6.334202 GGAGATAAGCGAGGATAATAGTTGG 58.666 44.000 0.00 0.00 0.00 3.77
2600 2945 5.501092 CGATAGATACACGGAGATAAGCGAG 60.501 48.000 0.00 0.00 39.76 5.03
2601 2946 4.329256 CGATAGATACACGGAGATAAGCGA 59.671 45.833 0.00 0.00 39.76 4.93
2602 2947 4.093115 ACGATAGATACACGGAGATAAGCG 59.907 45.833 0.00 0.00 41.38 4.68
2649 2994 5.234757 AACAAATGCATGTACAGCAAAACTG 59.765 36.000 19.25 15.79 46.27 3.16
2650 2995 4.947645 ACAAATGCATGTACAGCAAAACT 58.052 34.783 19.25 5.17 46.27 2.66
2651 2996 5.006552 ACAACAAATGCATGTACAGCAAAAC 59.993 36.000 19.25 0.00 46.27 2.43
2657 3021 5.107913 CGGAAAACAACAAATGCATGTACAG 60.108 40.000 0.00 0.00 32.02 2.74
2701 3065 2.159707 CCGGACGAAGCAAAAGTACATG 60.160 50.000 0.00 0.00 0.00 3.21
2721 3085 1.999024 CAACAACCAAAACACAGCACC 59.001 47.619 0.00 0.00 0.00 5.01
2826 3191 2.159226 AGCAACATACGAGGACAGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
2828 3193 3.762288 AGAAGCAACATACGAGGACAGTA 59.238 43.478 0.00 0.00 0.00 2.74
2829 3194 2.563179 AGAAGCAACATACGAGGACAGT 59.437 45.455 0.00 0.00 0.00 3.55
2830 3195 2.926200 CAGAAGCAACATACGAGGACAG 59.074 50.000 0.00 0.00 0.00 3.51
2831 3196 2.299013 ACAGAAGCAACATACGAGGACA 59.701 45.455 0.00 0.00 0.00 4.02
2832 3197 2.960819 ACAGAAGCAACATACGAGGAC 58.039 47.619 0.00 0.00 0.00 3.85
2833 3198 3.244078 ACAACAGAAGCAACATACGAGGA 60.244 43.478 0.00 0.00 0.00 3.71
2834 3199 3.067106 ACAACAGAAGCAACATACGAGG 58.933 45.455 0.00 0.00 0.00 4.63
2835 3200 3.181540 CGACAACAGAAGCAACATACGAG 60.182 47.826 0.00 0.00 0.00 4.18
2836 3201 2.729360 CGACAACAGAAGCAACATACGA 59.271 45.455 0.00 0.00 0.00 3.43
2837 3202 2.721797 GCGACAACAGAAGCAACATACG 60.722 50.000 0.00 0.00 0.00 3.06
2838 3203 2.223144 TGCGACAACAGAAGCAACATAC 59.777 45.455 0.00 0.00 36.60 2.39
2875 3243 6.233905 TCTATCACGAGATTTGATTCCCAA 57.766 37.500 0.00 0.00 35.31 4.12
2923 3291 2.758009 TGTTCCGTACCTACTGCAAAC 58.242 47.619 0.00 0.00 0.00 2.93
2932 3300 2.352421 CGTGATGTCTTGTTCCGTACCT 60.352 50.000 0.00 0.00 0.00 3.08
2973 3341 2.133281 TTGTCCCATCTCATGCAAGG 57.867 50.000 0.00 0.00 0.00 3.61
2992 3360 2.637872 TCCAAGAATTCAGACGACCCTT 59.362 45.455 8.44 0.00 0.00 3.95
3013 3381 8.837389 GGGTAAATAGAAAATGCTATCTTCGTT 58.163 33.333 0.00 0.00 30.95 3.85
3018 3386 8.282256 ACAAGGGGTAAATAGAAAATGCTATCT 58.718 33.333 0.00 0.00 30.95 1.98
3036 3405 6.755542 TTTTAAATTGATTGGACAAGGGGT 57.244 33.333 0.00 0.00 33.22 4.95
3038 3407 7.391275 AGCATTTTTAAATTGATTGGACAAGGG 59.609 33.333 4.07 0.00 33.22 3.95
3061 3430 1.848652 ACCTAGGAGCGTTTAGAGCA 58.151 50.000 17.98 0.00 37.01 4.26
3067 3436 2.501261 GGAACAAACCTAGGAGCGTTT 58.499 47.619 17.98 2.07 32.48 3.60
3070 3439 0.323629 TGGGAACAAACCTAGGAGCG 59.676 55.000 17.98 5.12 37.44 5.03
3093 3462 0.401356 TGCCACAGCCAGAGAATTCA 59.599 50.000 8.44 0.00 38.69 2.57
3125 3494 0.107508 ATTGCTCGTGATCACAGGGG 60.108 55.000 24.93 11.14 35.73 4.79
3135 3505 3.510388 TTCTCCTACTCATTGCTCGTG 57.490 47.619 0.00 0.00 0.00 4.35
3137 3507 4.116747 ACTTTCTCCTACTCATTGCTCG 57.883 45.455 0.00 0.00 0.00 5.03
3144 3514 1.131883 GCGCGTACTTTCTCCTACTCA 59.868 52.381 8.43 0.00 0.00 3.41
3179 3549 7.108847 TCAATTTCCACAGGATTTTTGTTGTT 58.891 30.769 0.00 0.00 0.00 2.83
3180 3550 6.648192 TCAATTTCCACAGGATTTTTGTTGT 58.352 32.000 0.00 0.00 0.00 3.32
3181 3551 7.359431 CGATCAATTTCCACAGGATTTTTGTTG 60.359 37.037 0.00 0.00 0.00 3.33
3182 3552 6.646240 CGATCAATTTCCACAGGATTTTTGTT 59.354 34.615 0.00 0.00 0.00 2.83
3183 3553 6.158598 CGATCAATTTCCACAGGATTTTTGT 58.841 36.000 0.00 0.00 0.00 2.83
3184 3554 6.158598 ACGATCAATTTCCACAGGATTTTTG 58.841 36.000 0.00 0.00 0.00 2.44
3209 3579 7.088589 TGAGACTTTTTGAGAACTTCCAAAG 57.911 36.000 0.00 0.00 34.29 2.77
3220 3590 6.199719 GCAATGTTCCTTTGAGACTTTTTGAG 59.800 38.462 0.00 0.00 0.00 3.02
3221 3591 6.042143 GCAATGTTCCTTTGAGACTTTTTGA 58.958 36.000 0.00 0.00 0.00 2.69
3228 3598 2.887152 ACTGGCAATGTTCCTTTGAGAC 59.113 45.455 0.00 0.00 0.00 3.36
3240 3611 5.125100 ACATGTCTACAAAACTGGCAATG 57.875 39.130 0.00 0.00 0.00 2.82
3242 3613 5.616270 TCTACATGTCTACAAAACTGGCAA 58.384 37.500 0.00 0.00 0.00 4.52
3243 3614 5.222079 TCTACATGTCTACAAAACTGGCA 57.778 39.130 0.00 0.00 0.00 4.92
3244 3615 6.743575 ATTCTACATGTCTACAAAACTGGC 57.256 37.500 0.00 0.00 0.00 4.85
3313 3701 7.080353 TCACTTCTCATGCATGAATAACTTG 57.920 36.000 28.39 20.00 36.18 3.16
3361 3752 8.023706 GCAGGTTTGAAAAACCAAATTTAACAA 58.976 29.630 20.82 0.00 42.69 2.83
3363 3754 7.696035 CAGCAGGTTTGAAAAACCAAATTTAAC 59.304 33.333 20.82 4.36 42.69 2.01
3364 3755 7.607991 TCAGCAGGTTTGAAAAACCAAATTTAA 59.392 29.630 20.82 1.47 42.69 1.52
3366 3757 5.942826 TCAGCAGGTTTGAAAAACCAAATTT 59.057 32.000 20.82 0.61 42.69 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.