Multiple sequence alignment - TraesCS5B01G336500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G336500 chr5B 100.000 3305 0 0 1 3305 519660047 519663351 0.000000e+00 6104.0
1 TraesCS5B01G336500 chr5B 93.075 1574 85 11 921 2476 520036714 520038281 0.000000e+00 2281.0
2 TraesCS5B01G336500 chr5B 91.427 1563 93 15 771 2307 520046282 520047829 0.000000e+00 2106.0
3 TraesCS5B01G336500 chr5B 91.038 1484 120 7 997 2476 519451328 519452802 0.000000e+00 1991.0
4 TraesCS5B01G336500 chr5B 88.399 431 34 11 1 429 846356 845940 3.810000e-139 505.0
5 TraesCS5B01G336500 chr5B 80.586 649 83 18 2547 3177 534913791 534913168 8.360000e-126 460.0
6 TraesCS5B01G336500 chr5B 96.078 51 2 0 771 821 520036592 520036642 2.110000e-12 84.2
7 TraesCS5B01G336500 chr5D 93.404 1789 87 7 665 2449 430445232 430446993 0.000000e+00 2621.0
8 TraesCS5B01G336500 chr5D 91.763 1469 112 4 997 2464 430164059 430165519 0.000000e+00 2034.0
9 TraesCS5B01G336500 chr5D 88.863 1697 122 25 666 2317 430511290 430512964 0.000000e+00 2025.0
10 TraesCS5B01G336500 chr5D 91.270 378 21 6 49 425 556072003 556071637 3.810000e-139 505.0
11 TraesCS5B01G336500 chr5D 80.586 546 74 7 2627 3167 507620276 507619758 3.090000e-105 392.0
12 TraesCS5B01G336500 chr5D 85.417 96 8 2 2885 2974 507619571 507619476 9.760000e-16 95.3
13 TraesCS5B01G336500 chr5A 92.707 1522 99 8 914 2429 545984530 545986045 0.000000e+00 2185.0
14 TraesCS5B01G336500 chr5A 92.843 1467 96 5 998 2461 546146219 546147679 0.000000e+00 2119.0
15 TraesCS5B01G336500 chr5A 91.763 1469 112 4 997 2464 545870668 545872128 0.000000e+00 2034.0
16 TraesCS5B01G336500 chr5A 83.969 393 44 9 430 809 545984138 545984524 3.140000e-95 359.0
17 TraesCS5B01G336500 chr5A 83.333 324 50 4 2510 2830 429517017 429516695 2.490000e-76 296.0
18 TraesCS5B01G336500 chr5A 75.852 352 22 27 666 980 546145838 546146163 1.610000e-23 121.0
19 TraesCS5B01G336500 chr6A 93.985 399 17 5 1 395 256751497 256751892 6.100000e-167 597.0
20 TraesCS5B01G336500 chr1A 91.395 430 28 6 1 429 45121140 45120719 6.150000e-162 580.0
21 TraesCS5B01G336500 chr1A 80.429 373 61 10 2476 2840 564572172 564571804 1.170000e-69 274.0
22 TraesCS5B01G336500 chr1A 88.764 89 9 1 2743 2830 53505595 53505507 1.250000e-19 108.0
23 TraesCS5B01G336500 chr4D 90.972 432 29 7 1 430 30921779 30921356 1.030000e-159 573.0
24 TraesCS5B01G336500 chr4D 83.976 337 49 1 2914 3245 49754991 49755327 5.320000e-83 318.0
25 TraesCS5B01G336500 chr7D 91.852 405 28 4 1 402 156202749 156202347 8.010000e-156 560.0
26 TraesCS5B01G336500 chr7D 89.306 346 24 8 6 350 261613864 261613531 3.940000e-114 422.0
27 TraesCS5B01G336500 chr7D 80.299 335 48 12 2921 3249 214965735 214966057 1.530000e-58 237.0
28 TraesCS5B01G336500 chr6D 91.346 416 27 6 1 415 249006770 249007177 8.010000e-156 560.0
29 TraesCS5B01G336500 chr6D 84.091 132 20 1 486 616 79866174 79866305 3.460000e-25 126.0
30 TraesCS5B01G336500 chr6D 81.679 131 22 2 3121 3250 392529533 392529662 1.250000e-19 108.0
31 TraesCS5B01G336500 chr6B 84.828 435 57 9 1 430 491649849 491650279 2.360000e-116 429.0
32 TraesCS5B01G336500 chr3A 77.291 731 113 24 2525 3246 53739796 53740482 6.690000e-102 381.0
33 TraesCS5B01G336500 chr2D 84.058 345 51 4 2488 2830 139739940 139739598 2.460000e-86 329.0
34 TraesCS5B01G336500 chr1D 83.621 348 51 6 2483 2827 256079982 256080326 4.110000e-84 322.0
35 TraesCS5B01G336500 chr4A 77.722 597 84 18 2655 3247 4153155 4152604 1.480000e-83 320.0
36 TraesCS5B01G336500 chr7A 80.055 366 57 6 2478 2840 609264471 609264119 1.180000e-64 257.0
37 TraesCS5B01G336500 chr7A 80.916 131 22 3 3121 3250 635281041 635281169 2.100000e-17 100.0
38 TraesCS5B01G336500 chr3B 94.231 156 9 0 274 429 20818433 20818588 4.260000e-59 239.0
39 TraesCS5B01G336500 chr3B 85.388 219 31 1 3029 3246 102739633 102739415 3.320000e-55 226.0
40 TraesCS5B01G336500 chr4B 78.191 376 71 6 2876 3240 601745296 601745671 2.570000e-56 230.0
41 TraesCS5B01G336500 chr7B 81.818 275 39 8 2490 2763 679632851 679632587 1.540000e-53 220.0
42 TraesCS5B01G336500 chr1B 79.104 268 39 13 2487 2750 625144815 625144561 5.670000e-38 169.0
43 TraesCS5B01G336500 chr1B 80.159 126 23 2 3121 3245 626134171 626134047 3.510000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G336500 chr5B 519660047 519663351 3304 False 6104.00 6104 100.0000 1 3305 1 chr5B.!!$F2 3304
1 TraesCS5B01G336500 chr5B 520046282 520047829 1547 False 2106.00 2106 91.4270 771 2307 1 chr5B.!!$F3 1536
2 TraesCS5B01G336500 chr5B 519451328 519452802 1474 False 1991.00 1991 91.0380 997 2476 1 chr5B.!!$F1 1479
3 TraesCS5B01G336500 chr5B 520036592 520038281 1689 False 1182.60 2281 94.5765 771 2476 2 chr5B.!!$F4 1705
4 TraesCS5B01G336500 chr5B 534913168 534913791 623 True 460.00 460 80.5860 2547 3177 1 chr5B.!!$R2 630
5 TraesCS5B01G336500 chr5D 430445232 430446993 1761 False 2621.00 2621 93.4040 665 2449 1 chr5D.!!$F2 1784
6 TraesCS5B01G336500 chr5D 430164059 430165519 1460 False 2034.00 2034 91.7630 997 2464 1 chr5D.!!$F1 1467
7 TraesCS5B01G336500 chr5D 430511290 430512964 1674 False 2025.00 2025 88.8630 666 2317 1 chr5D.!!$F3 1651
8 TraesCS5B01G336500 chr5D 507619476 507620276 800 True 243.65 392 83.0015 2627 3167 2 chr5D.!!$R2 540
9 TraesCS5B01G336500 chr5A 545870668 545872128 1460 False 2034.00 2034 91.7630 997 2464 1 chr5A.!!$F1 1467
10 TraesCS5B01G336500 chr5A 545984138 545986045 1907 False 1272.00 2185 88.3380 430 2429 2 chr5A.!!$F2 1999
11 TraesCS5B01G336500 chr5A 546145838 546147679 1841 False 1120.00 2119 84.3475 666 2461 2 chr5A.!!$F3 1795
12 TraesCS5B01G336500 chr3A 53739796 53740482 686 False 381.00 381 77.2910 2525 3246 1 chr3A.!!$F1 721
13 TraesCS5B01G336500 chr4A 4152604 4153155 551 True 320.00 320 77.7220 2655 3247 1 chr4A.!!$R1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.037139 CCAAACCGGTACACCATCGA 60.037 55.0 8.0 0.0 35.14 3.59 F
857 920 0.037303 AGCATGAGGACAACCACCAG 59.963 55.0 0.0 0.0 38.94 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1365 0.179134 GGTCGTTGAGGATGACGGAG 60.179 60.0 0.0 0.0 43.83 4.63 R
2689 2823 0.031994 AGCATTTTTGCCCACACGAC 59.968 50.0 0.0 0.0 34.90 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.016905 AGGCCACTCTTGTCTACTGT 57.983 50.000 5.01 0.00 0.00 3.55
20 21 1.620819 AGGCCACTCTTGTCTACTGTG 59.379 52.381 5.01 0.00 0.00 3.66
21 22 1.618837 GGCCACTCTTGTCTACTGTGA 59.381 52.381 0.00 0.00 0.00 3.58
22 23 2.234908 GGCCACTCTTGTCTACTGTGAT 59.765 50.000 0.00 0.00 0.00 3.06
23 24 3.447586 GGCCACTCTTGTCTACTGTGATA 59.552 47.826 0.00 0.00 0.00 2.15
24 25 4.081642 GGCCACTCTTGTCTACTGTGATAA 60.082 45.833 0.00 0.00 0.00 1.75
25 26 5.395768 GGCCACTCTTGTCTACTGTGATAAT 60.396 44.000 0.00 0.00 0.00 1.28
26 27 5.521735 GCCACTCTTGTCTACTGTGATAATG 59.478 44.000 0.00 0.00 0.00 1.90
27 28 6.634805 CCACTCTTGTCTACTGTGATAATGT 58.365 40.000 0.00 0.00 0.00 2.71
28 29 6.754209 CCACTCTTGTCTACTGTGATAATGTC 59.246 42.308 0.00 0.00 0.00 3.06
29 30 7.315890 CACTCTTGTCTACTGTGATAATGTCA 58.684 38.462 0.00 0.00 0.00 3.58
30 31 7.487509 CACTCTTGTCTACTGTGATAATGTCAG 59.512 40.741 0.00 0.00 37.56 3.51
31 32 6.333416 TCTTGTCTACTGTGATAATGTCAGC 58.667 40.000 0.00 0.00 37.56 4.26
32 33 4.672409 TGTCTACTGTGATAATGTCAGCG 58.328 43.478 0.00 0.00 37.56 5.18
33 34 3.487574 GTCTACTGTGATAATGTCAGCGC 59.512 47.826 0.00 0.00 37.56 5.92
34 35 1.280982 ACTGTGATAATGTCAGCGCG 58.719 50.000 0.00 0.00 37.56 6.86
35 36 0.578683 CTGTGATAATGTCAGCGCGG 59.421 55.000 8.83 0.00 37.56 6.46
36 37 0.108377 TGTGATAATGTCAGCGCGGT 60.108 50.000 4.23 4.23 37.56 5.68
37 38 0.577269 GTGATAATGTCAGCGCGGTC 59.423 55.000 8.38 2.09 37.56 4.79
38 39 0.459899 TGATAATGTCAGCGCGGTCT 59.540 50.000 8.38 0.00 31.80 3.85
39 40 1.679153 TGATAATGTCAGCGCGGTCTA 59.321 47.619 8.38 0.00 31.80 2.59
40 41 2.052157 GATAATGTCAGCGCGGTCTAC 58.948 52.381 8.38 10.79 0.00 2.59
41 42 0.101759 TAATGTCAGCGCGGTCTACC 59.898 55.000 8.38 0.00 0.00 3.18
42 43 1.605058 AATGTCAGCGCGGTCTACCT 61.605 55.000 8.38 0.00 0.00 3.08
43 44 2.005960 ATGTCAGCGCGGTCTACCTC 62.006 60.000 8.38 0.00 0.00 3.85
44 45 2.045242 TCAGCGCGGTCTACCTCT 60.045 61.111 8.38 0.00 0.00 3.69
45 46 2.113433 TCAGCGCGGTCTACCTCTC 61.113 63.158 8.38 0.00 0.00 3.20
46 47 2.829458 AGCGCGGTCTACCTCTCC 60.829 66.667 4.23 0.00 0.00 3.71
47 48 4.253257 GCGCGGTCTACCTCTCCG 62.253 72.222 8.83 0.00 45.94 4.63
50 51 2.439701 CGGTCTACCTCTCCGCCA 60.440 66.667 0.00 0.00 37.90 5.69
51 52 2.050350 CGGTCTACCTCTCCGCCAA 61.050 63.158 0.00 0.00 37.90 4.52
52 53 1.601419 CGGTCTACCTCTCCGCCAAA 61.601 60.000 0.00 0.00 37.90 3.28
53 54 0.108281 GGTCTACCTCTCCGCCAAAC 60.108 60.000 0.00 0.00 0.00 2.93
54 55 0.108281 GTCTACCTCTCCGCCAAACC 60.108 60.000 0.00 0.00 0.00 3.27
55 56 1.153628 CTACCTCTCCGCCAAACCG 60.154 63.158 0.00 0.00 0.00 4.44
62 63 3.051479 CCGCCAAACCGGTACACC 61.051 66.667 8.00 0.00 43.24 4.16
63 64 2.280933 CGCCAAACCGGTACACCA 60.281 61.111 8.00 0.00 36.97 4.17
64 65 1.673009 CGCCAAACCGGTACACCAT 60.673 57.895 8.00 0.00 36.97 3.55
65 66 1.641123 CGCCAAACCGGTACACCATC 61.641 60.000 8.00 0.00 36.97 3.51
66 67 1.641123 GCCAAACCGGTACACCATCG 61.641 60.000 8.00 0.00 36.97 3.84
67 68 0.037139 CCAAACCGGTACACCATCGA 60.037 55.000 8.00 0.00 35.14 3.59
68 69 1.073177 CAAACCGGTACACCATCGAC 58.927 55.000 8.00 0.00 35.14 4.20
69 70 0.388907 AAACCGGTACACCATCGACG 60.389 55.000 8.00 0.00 35.14 5.12
70 71 2.103538 CCGGTACACCATCGACGG 59.896 66.667 0.00 0.00 35.14 4.79
71 72 2.409055 CCGGTACACCATCGACGGA 61.409 63.158 3.60 0.00 43.69 4.69
72 73 1.226491 CGGTACACCATCGACGGAC 60.226 63.158 3.60 0.00 35.14 4.79
73 74 1.226491 GGTACACCATCGACGGACG 60.226 63.158 3.60 0.00 38.54 4.79
84 85 1.835121 CGACGGACGAAGCATATTGA 58.165 50.000 0.00 0.00 45.77 2.57
85 86 1.781429 CGACGGACGAAGCATATTGAG 59.219 52.381 0.00 0.00 45.77 3.02
86 87 1.523095 GACGGACGAAGCATATTGAGC 59.477 52.381 0.00 0.00 0.00 4.26
87 88 1.137086 ACGGACGAAGCATATTGAGCT 59.863 47.619 0.00 0.00 45.97 4.09
88 89 1.789464 CGGACGAAGCATATTGAGCTC 59.211 52.381 6.82 6.82 42.53 4.09
89 90 1.789464 GGACGAAGCATATTGAGCTCG 59.211 52.381 9.64 0.00 42.53 5.03
90 91 2.543861 GGACGAAGCATATTGAGCTCGA 60.544 50.000 6.01 6.01 42.53 4.04
91 92 3.312828 GACGAAGCATATTGAGCTCGAT 58.687 45.455 20.32 20.32 42.53 3.59
92 93 4.476862 GACGAAGCATATTGAGCTCGATA 58.523 43.478 23.14 23.14 42.53 2.92
93 94 5.065704 ACGAAGCATATTGAGCTCGATAT 57.934 39.130 25.17 25.17 42.53 1.63
94 95 5.473931 ACGAAGCATATTGAGCTCGATATT 58.526 37.500 27.39 17.57 42.53 1.28
95 96 5.574830 ACGAAGCATATTGAGCTCGATATTC 59.425 40.000 27.39 23.66 42.53 1.75
96 97 5.574443 CGAAGCATATTGAGCTCGATATTCA 59.426 40.000 27.39 9.74 42.53 2.57
97 98 6.453527 CGAAGCATATTGAGCTCGATATTCAC 60.454 42.308 27.39 20.51 42.53 3.18
98 99 6.035368 AGCATATTGAGCTCGATATTCACT 57.965 37.500 27.39 21.94 38.01 3.41
99 100 6.462500 AGCATATTGAGCTCGATATTCACTT 58.538 36.000 27.39 9.60 38.01 3.16
100 101 6.589523 AGCATATTGAGCTCGATATTCACTTC 59.410 38.462 27.39 14.99 38.01 3.01
101 102 6.453527 GCATATTGAGCTCGATATTCACTTCG 60.454 42.308 27.39 17.70 32.08 3.79
102 103 4.371855 TTGAGCTCGATATTCACTTCGT 57.628 40.909 9.64 0.00 36.74 3.85
103 104 3.695816 TGAGCTCGATATTCACTTCGTG 58.304 45.455 9.64 0.00 36.74 4.35
104 105 2.912900 GCTCGATATTCACTTCGTGC 57.087 50.000 4.04 4.04 44.24 5.34
105 106 1.188138 GCTCGATATTCACTTCGTGCG 59.812 52.381 4.04 0.00 42.49 5.34
106 107 1.188138 CTCGATATTCACTTCGTGCGC 59.812 52.381 0.00 0.00 36.74 6.09
107 108 0.112137 CGATATTCACTTCGTGCGCG 60.112 55.000 14.79 14.79 39.92 6.86
108 109 1.197055 GATATTCACTTCGTGCGCGA 58.803 50.000 20.10 20.10 46.36 5.87
122 123 3.741476 GCGAGCAGGTTGCCCTTG 61.741 66.667 0.00 0.00 46.52 3.61
123 124 3.058160 CGAGCAGGTTGCCCTTGG 61.058 66.667 0.00 0.00 46.52 3.61
144 145 1.508632 CGTGTTCGGGTTCTTCATGT 58.491 50.000 0.00 0.00 0.00 3.21
145 146 1.194547 CGTGTTCGGGTTCTTCATGTG 59.805 52.381 0.00 0.00 0.00 3.21
146 147 1.069227 GTGTTCGGGTTCTTCATGTGC 60.069 52.381 0.00 0.00 0.00 4.57
147 148 0.521735 GTTCGGGTTCTTCATGTGCC 59.478 55.000 0.00 0.00 0.00 5.01
148 149 0.953471 TTCGGGTTCTTCATGTGCCG 60.953 55.000 0.00 0.00 0.00 5.69
149 150 1.375396 CGGGTTCTTCATGTGCCGA 60.375 57.895 0.00 0.00 0.00 5.54
150 151 1.635663 CGGGTTCTTCATGTGCCGAC 61.636 60.000 0.00 0.00 0.00 4.79
151 152 1.635663 GGGTTCTTCATGTGCCGACG 61.636 60.000 0.00 0.00 0.00 5.12
152 153 0.669318 GGTTCTTCATGTGCCGACGA 60.669 55.000 0.00 0.00 0.00 4.20
153 154 1.359848 GTTCTTCATGTGCCGACGAT 58.640 50.000 0.00 0.00 0.00 3.73
154 155 1.061131 GTTCTTCATGTGCCGACGATG 59.939 52.381 0.00 0.00 0.00 3.84
155 156 1.083806 TCTTCATGTGCCGACGATGC 61.084 55.000 0.00 0.00 0.00 3.91
156 157 1.360931 CTTCATGTGCCGACGATGCA 61.361 55.000 0.00 0.00 36.12 3.96
157 158 0.952984 TTCATGTGCCGACGATGCAA 60.953 50.000 0.00 0.00 41.06 4.08
158 159 1.226101 CATGTGCCGACGATGCAAC 60.226 57.895 0.00 0.00 41.06 4.17
159 160 1.670730 ATGTGCCGACGATGCAACA 60.671 52.632 0.00 0.55 41.06 3.33
160 161 1.638388 ATGTGCCGACGATGCAACAG 61.638 55.000 0.00 0.00 41.06 3.16
161 162 2.030412 TGCCGACGATGCAACAGT 59.970 55.556 0.00 0.00 35.40 3.55
162 163 1.596752 TGCCGACGATGCAACAGTT 60.597 52.632 0.00 0.00 35.40 3.16
163 164 1.163420 TGCCGACGATGCAACAGTTT 61.163 50.000 0.00 0.00 35.40 2.66
164 165 0.725784 GCCGACGATGCAACAGTTTG 60.726 55.000 0.00 0.00 35.62 2.93
176 177 4.492791 CAACAGTTTGCTGATGTGATGA 57.507 40.909 1.30 0.00 45.28 2.92
177 178 4.224433 CAACAGTTTGCTGATGTGATGAC 58.776 43.478 1.30 0.00 45.28 3.06
178 179 3.748083 ACAGTTTGCTGATGTGATGACT 58.252 40.909 1.30 0.00 45.28 3.41
179 180 4.898320 ACAGTTTGCTGATGTGATGACTA 58.102 39.130 1.30 0.00 45.28 2.59
180 181 5.308014 ACAGTTTGCTGATGTGATGACTAA 58.692 37.500 1.30 0.00 45.28 2.24
181 182 5.410746 ACAGTTTGCTGATGTGATGACTAAG 59.589 40.000 1.30 0.00 45.28 2.18
182 183 4.940046 AGTTTGCTGATGTGATGACTAAGG 59.060 41.667 0.00 0.00 0.00 2.69
183 184 3.548745 TGCTGATGTGATGACTAAGGG 57.451 47.619 0.00 0.00 0.00 3.95
184 185 3.106827 TGCTGATGTGATGACTAAGGGA 58.893 45.455 0.00 0.00 0.00 4.20
185 186 3.713248 TGCTGATGTGATGACTAAGGGAT 59.287 43.478 0.00 0.00 0.00 3.85
186 187 4.164796 TGCTGATGTGATGACTAAGGGATT 59.835 41.667 0.00 0.00 0.00 3.01
187 188 4.514441 GCTGATGTGATGACTAAGGGATTG 59.486 45.833 0.00 0.00 0.00 2.67
188 189 4.454678 TGATGTGATGACTAAGGGATTGC 58.545 43.478 0.00 0.00 0.00 3.56
189 190 3.281727 TGTGATGACTAAGGGATTGCC 57.718 47.619 0.00 0.00 0.00 4.52
190 191 2.846206 TGTGATGACTAAGGGATTGCCT 59.154 45.455 0.00 0.00 0.00 4.75
191 192 4.037222 TGTGATGACTAAGGGATTGCCTA 58.963 43.478 0.00 0.00 0.00 3.93
192 193 4.141711 TGTGATGACTAAGGGATTGCCTAC 60.142 45.833 0.00 0.00 0.00 3.18
193 194 4.101741 GTGATGACTAAGGGATTGCCTACT 59.898 45.833 0.00 0.00 0.00 2.57
194 195 4.345257 TGATGACTAAGGGATTGCCTACTC 59.655 45.833 0.00 0.00 0.00 2.59
195 196 3.039011 TGACTAAGGGATTGCCTACTCC 58.961 50.000 0.00 0.00 0.00 3.85
198 199 3.643398 GGGATTGCCTACTCCCGT 58.357 61.111 0.00 0.00 41.74 5.28
199 200 1.446366 GGGATTGCCTACTCCCGTC 59.554 63.158 0.00 0.00 41.74 4.79
200 201 1.049289 GGGATTGCCTACTCCCGTCT 61.049 60.000 0.00 0.00 41.74 4.18
201 202 0.831307 GGATTGCCTACTCCCGTCTT 59.169 55.000 0.00 0.00 0.00 3.01
202 203 1.202545 GGATTGCCTACTCCCGTCTTC 60.203 57.143 0.00 0.00 0.00 2.87
203 204 0.460311 ATTGCCTACTCCCGTCTTCG 59.540 55.000 0.00 0.00 0.00 3.79
204 205 0.609957 TTGCCTACTCCCGTCTTCGA 60.610 55.000 0.00 0.00 39.71 3.71
205 206 1.030488 TGCCTACTCCCGTCTTCGAG 61.030 60.000 0.00 0.00 39.71 4.04
206 207 1.726533 GCCTACTCCCGTCTTCGAGG 61.727 65.000 0.00 0.00 39.71 4.63
207 208 0.107312 CCTACTCCCGTCTTCGAGGA 60.107 60.000 0.00 0.00 39.71 3.71
209 210 4.322689 CTCCCGTCTTCGAGGAGT 57.677 61.111 9.04 0.00 43.13 3.85
210 211 2.569183 CTCCCGTCTTCGAGGAGTT 58.431 57.895 9.04 0.00 43.13 3.01
211 212 0.889306 CTCCCGTCTTCGAGGAGTTT 59.111 55.000 9.04 0.00 43.13 2.66
212 213 0.886563 TCCCGTCTTCGAGGAGTTTC 59.113 55.000 0.00 0.00 39.71 2.78
213 214 0.456312 CCCGTCTTCGAGGAGTTTCG 60.456 60.000 0.00 0.00 41.79 3.46
214 215 0.456312 CCGTCTTCGAGGAGTTTCGG 60.456 60.000 9.38 9.38 40.83 4.30
215 216 0.240411 CGTCTTCGAGGAGTTTCGGT 59.760 55.000 0.00 0.00 40.83 4.69
216 217 1.728502 CGTCTTCGAGGAGTTTCGGTC 60.729 57.143 0.00 0.00 40.83 4.79
217 218 0.886563 TCTTCGAGGAGTTTCGGTCC 59.113 55.000 0.00 0.00 40.83 4.46
218 219 0.601558 CTTCGAGGAGTTTCGGTCCA 59.398 55.000 0.00 0.00 40.83 4.02
219 220 0.601558 TTCGAGGAGTTTCGGTCCAG 59.398 55.000 0.00 0.00 40.83 3.86
220 221 0.538977 TCGAGGAGTTTCGGTCCAGT 60.539 55.000 0.00 0.00 40.83 4.00
221 222 0.109226 CGAGGAGTTTCGGTCCAGTC 60.109 60.000 0.00 0.00 36.43 3.51
222 223 1.258676 GAGGAGTTTCGGTCCAGTCT 58.741 55.000 0.00 0.00 36.43 3.24
223 224 1.202817 GAGGAGTTTCGGTCCAGTCTC 59.797 57.143 0.00 0.00 36.43 3.36
224 225 1.203075 AGGAGTTTCGGTCCAGTCTCT 60.203 52.381 0.00 0.00 36.43 3.10
225 226 1.067495 GGAGTTTCGGTCCAGTCTCTG 60.067 57.143 0.00 0.00 33.84 3.35
226 227 1.614413 GAGTTTCGGTCCAGTCTCTGT 59.386 52.381 0.00 0.00 0.00 3.41
227 228 1.341531 AGTTTCGGTCCAGTCTCTGTG 59.658 52.381 0.00 0.00 0.00 3.66
228 229 1.068741 GTTTCGGTCCAGTCTCTGTGT 59.931 52.381 0.00 0.00 0.00 3.72
229 230 0.959553 TTCGGTCCAGTCTCTGTGTC 59.040 55.000 0.00 0.00 0.00 3.67
230 231 0.110678 TCGGTCCAGTCTCTGTGTCT 59.889 55.000 0.00 0.00 0.00 3.41
231 232 0.523966 CGGTCCAGTCTCTGTGTCTC 59.476 60.000 0.00 0.00 0.00 3.36
232 233 0.892063 GGTCCAGTCTCTGTGTCTCC 59.108 60.000 0.00 0.00 0.00 3.71
233 234 0.523966 GTCCAGTCTCTGTGTCTCCG 59.476 60.000 0.00 0.00 0.00 4.63
234 235 0.609406 TCCAGTCTCTGTGTCTCCGG 60.609 60.000 0.00 0.00 0.00 5.14
235 236 1.214062 CAGTCTCTGTGTCTCCGGC 59.786 63.158 0.00 0.00 0.00 6.13
236 237 2.179517 GTCTCTGTGTCTCCGGCG 59.820 66.667 0.00 0.00 0.00 6.46
237 238 2.033602 TCTCTGTGTCTCCGGCGA 59.966 61.111 9.30 0.00 0.00 5.54
238 239 2.179517 CTCTGTGTCTCCGGCGAC 59.820 66.667 17.77 17.77 34.52 5.19
253 254 3.564027 GACGCTTCGAATGCCGGG 61.564 66.667 2.18 7.54 39.14 5.73
290 291 5.576447 GGGGGTGTTGAGTATGTATTTTG 57.424 43.478 0.00 0.00 0.00 2.44
291 292 5.014202 GGGGGTGTTGAGTATGTATTTTGT 58.986 41.667 0.00 0.00 0.00 2.83
292 293 6.181908 GGGGGTGTTGAGTATGTATTTTGTA 58.818 40.000 0.00 0.00 0.00 2.41
293 294 6.094464 GGGGGTGTTGAGTATGTATTTTGTAC 59.906 42.308 0.00 0.00 0.00 2.90
294 295 6.882678 GGGGTGTTGAGTATGTATTTTGTACT 59.117 38.462 0.00 0.00 0.00 2.73
295 296 7.148306 GGGGTGTTGAGTATGTATTTTGTACTG 60.148 40.741 0.00 0.00 0.00 2.74
296 297 7.241376 GGTGTTGAGTATGTATTTTGTACTGC 58.759 38.462 0.00 0.00 0.00 4.40
297 298 7.094975 GGTGTTGAGTATGTATTTTGTACTGCA 60.095 37.037 0.00 0.00 0.00 4.41
298 299 7.744715 GTGTTGAGTATGTATTTTGTACTGCAC 59.255 37.037 0.00 0.00 0.00 4.57
299 300 6.641176 TGAGTATGTATTTTGTACTGCACG 57.359 37.500 0.00 0.00 0.00 5.34
300 301 6.160684 TGAGTATGTATTTTGTACTGCACGT 58.839 36.000 0.00 0.00 0.00 4.49
301 302 6.090223 TGAGTATGTATTTTGTACTGCACGTG 59.910 38.462 12.28 12.28 0.00 4.49
302 303 5.929992 AGTATGTATTTTGTACTGCACGTGT 59.070 36.000 18.38 0.00 0.00 4.49
303 304 7.092079 AGTATGTATTTTGTACTGCACGTGTA 58.908 34.615 18.38 12.42 0.00 2.90
304 305 6.978343 ATGTATTTTGTACTGCACGTGTAT 57.022 33.333 18.38 5.50 0.00 2.29
305 306 6.788684 TGTATTTTGTACTGCACGTGTATT 57.211 33.333 18.38 9.73 0.00 1.89
306 307 6.594886 TGTATTTTGTACTGCACGTGTATTG 58.405 36.000 18.38 4.27 0.00 1.90
307 308 4.475763 TTTTGTACTGCACGTGTATTGG 57.524 40.909 18.38 3.48 0.00 3.16
308 309 3.388345 TTGTACTGCACGTGTATTGGA 57.612 42.857 18.38 0.00 0.00 3.53
309 310 2.954316 TGTACTGCACGTGTATTGGAG 58.046 47.619 18.38 3.50 38.33 3.86
310 311 2.297880 TGTACTGCACGTGTATTGGAGT 59.702 45.455 18.38 9.81 46.26 3.85
311 312 2.543777 ACTGCACGTGTATTGGAGTT 57.456 45.000 18.38 0.00 42.43 3.01
312 313 2.143122 ACTGCACGTGTATTGGAGTTG 58.857 47.619 18.38 0.35 42.43 3.16
313 314 2.143122 CTGCACGTGTATTGGAGTTGT 58.857 47.619 18.38 0.00 0.00 3.32
314 315 1.870402 TGCACGTGTATTGGAGTTGTG 59.130 47.619 18.38 0.00 0.00 3.33
315 316 1.196808 GCACGTGTATTGGAGTTGTGG 59.803 52.381 18.38 0.00 0.00 4.17
316 317 1.196808 CACGTGTATTGGAGTTGTGGC 59.803 52.381 7.58 0.00 0.00 5.01
317 318 0.802494 CGTGTATTGGAGTTGTGGCC 59.198 55.000 0.00 0.00 0.00 5.36
318 319 1.173913 GTGTATTGGAGTTGTGGCCC 58.826 55.000 0.00 0.00 0.00 5.80
319 320 0.774276 TGTATTGGAGTTGTGGCCCA 59.226 50.000 0.00 0.00 0.00 5.36
320 321 1.173913 GTATTGGAGTTGTGGCCCAC 58.826 55.000 7.01 7.01 34.56 4.61
321 322 0.039035 TATTGGAGTTGTGGCCCACC 59.961 55.000 12.25 0.00 32.73 4.61
322 323 1.729267 ATTGGAGTTGTGGCCCACCT 61.729 55.000 12.25 1.20 36.63 4.00
323 324 2.034221 GGAGTTGTGGCCCACCTC 59.966 66.667 12.25 11.32 36.63 3.85
324 325 2.034221 GAGTTGTGGCCCACCTCC 59.966 66.667 12.25 0.00 36.63 4.30
325 326 2.450502 AGTTGTGGCCCACCTCCT 60.451 61.111 12.25 1.06 36.63 3.69
326 327 1.151899 AGTTGTGGCCCACCTCCTA 60.152 57.895 12.25 0.00 36.63 2.94
327 328 1.201429 AGTTGTGGCCCACCTCCTAG 61.201 60.000 12.25 0.00 36.63 3.02
328 329 1.151899 TTGTGGCCCACCTCCTAGT 60.152 57.895 12.25 0.00 36.63 2.57
329 330 1.198759 TTGTGGCCCACCTCCTAGTC 61.199 60.000 12.25 0.00 36.63 2.59
330 331 1.306226 GTGGCCCACCTCCTAGTCT 60.306 63.158 1.17 0.00 36.63 3.24
331 332 0.910088 GTGGCCCACCTCCTAGTCTT 60.910 60.000 1.17 0.00 36.63 3.01
332 333 0.909610 TGGCCCACCTCCTAGTCTTG 60.910 60.000 0.00 0.00 36.63 3.02
333 334 0.910088 GGCCCACCTCCTAGTCTTGT 60.910 60.000 0.00 0.00 0.00 3.16
334 335 1.621622 GGCCCACCTCCTAGTCTTGTA 60.622 57.143 0.00 0.00 0.00 2.41
335 336 2.399580 GCCCACCTCCTAGTCTTGTAT 58.600 52.381 0.00 0.00 0.00 2.29
336 337 3.573695 GCCCACCTCCTAGTCTTGTATA 58.426 50.000 0.00 0.00 0.00 1.47
337 338 3.574826 GCCCACCTCCTAGTCTTGTATAG 59.425 52.174 0.00 0.00 0.00 1.31
338 339 4.805744 CCCACCTCCTAGTCTTGTATAGT 58.194 47.826 0.00 0.00 0.00 2.12
339 340 5.209659 CCCACCTCCTAGTCTTGTATAGTT 58.790 45.833 0.00 0.00 0.00 2.24
340 341 5.069251 CCCACCTCCTAGTCTTGTATAGTTG 59.931 48.000 0.00 0.00 0.00 3.16
341 342 5.892119 CCACCTCCTAGTCTTGTATAGTTGA 59.108 44.000 0.00 0.00 0.00 3.18
342 343 6.039941 CCACCTCCTAGTCTTGTATAGTTGAG 59.960 46.154 0.00 0.00 0.00 3.02
343 344 6.039941 CACCTCCTAGTCTTGTATAGTTGAGG 59.960 46.154 0.00 0.00 41.08 3.86
344 345 6.130569 CCTCCTAGTCTTGTATAGTTGAGGT 58.869 44.000 0.00 0.00 32.82 3.85
345 346 7.092083 ACCTCCTAGTCTTGTATAGTTGAGGTA 60.092 40.741 0.00 0.00 45.12 3.08
346 347 7.446013 CCTCCTAGTCTTGTATAGTTGAGGTAG 59.554 44.444 0.00 0.00 32.82 3.18
347 348 8.098963 TCCTAGTCTTGTATAGTTGAGGTAGA 57.901 38.462 0.00 0.00 0.00 2.59
348 349 8.212312 TCCTAGTCTTGTATAGTTGAGGTAGAG 58.788 40.741 0.00 0.00 0.00 2.43
349 350 7.446013 CCTAGTCTTGTATAGTTGAGGTAGAGG 59.554 44.444 0.00 0.00 0.00 3.69
350 351 5.595133 AGTCTTGTATAGTTGAGGTAGAGGC 59.405 44.000 0.00 0.00 0.00 4.70
351 352 4.894114 TCTTGTATAGTTGAGGTAGAGGCC 59.106 45.833 0.00 0.00 0.00 5.19
352 353 4.537945 TGTATAGTTGAGGTAGAGGCCT 57.462 45.455 3.86 3.86 42.53 5.19
353 354 4.880164 TGTATAGTTGAGGTAGAGGCCTT 58.120 43.478 6.77 0.00 39.34 4.35
354 355 5.278061 TGTATAGTTGAGGTAGAGGCCTTT 58.722 41.667 6.77 2.86 39.34 3.11
355 356 5.363005 TGTATAGTTGAGGTAGAGGCCTTTC 59.637 44.000 6.77 0.00 39.34 2.62
356 357 1.909986 AGTTGAGGTAGAGGCCTTTCC 59.090 52.381 6.77 10.30 39.34 3.13
373 374 9.043548 AGGCCTTTCCTTGTATTATATATACGT 57.956 33.333 0.00 0.00 44.75 3.57
374 375 9.095065 GGCCTTTCCTTGTATTATATATACGTG 57.905 37.037 0.00 0.00 0.00 4.49
375 376 8.601476 GCCTTTCCTTGTATTATATATACGTGC 58.399 37.037 0.00 0.00 0.00 5.34
376 377 9.647797 CCTTTCCTTGTATTATATATACGTGCA 57.352 33.333 0.00 0.00 0.00 4.57
384 385 9.361315 TGTATTATATATACGTGCATCAACACC 57.639 33.333 0.00 0.00 37.25 4.16
385 386 9.361315 GTATTATATATACGTGCATCAACACCA 57.639 33.333 0.00 0.00 37.25 4.17
386 387 8.840833 ATTATATATACGTGCATCAACACCAA 57.159 30.769 0.00 0.00 37.25 3.67
387 388 8.840833 TTATATATACGTGCATCAACACCAAT 57.159 30.769 0.00 0.00 37.25 3.16
388 389 5.673337 ATATACGTGCATCAACACCAATC 57.327 39.130 0.00 0.00 37.25 2.67
389 390 1.603456 ACGTGCATCAACACCAATCA 58.397 45.000 0.00 0.00 37.25 2.57
390 391 1.952990 ACGTGCATCAACACCAATCAA 59.047 42.857 0.00 0.00 37.25 2.57
391 392 2.557924 ACGTGCATCAACACCAATCAAT 59.442 40.909 0.00 0.00 37.25 2.57
392 393 3.755905 ACGTGCATCAACACCAATCAATA 59.244 39.130 0.00 0.00 37.25 1.90
393 394 4.097714 CGTGCATCAACACCAATCAATAC 58.902 43.478 0.00 0.00 37.25 1.89
394 395 4.379290 CGTGCATCAACACCAATCAATACA 60.379 41.667 0.00 0.00 37.25 2.29
395 396 5.468592 GTGCATCAACACCAATCAATACAA 58.531 37.500 0.00 0.00 34.35 2.41
396 397 5.345741 GTGCATCAACACCAATCAATACAAC 59.654 40.000 0.00 0.00 34.35 3.32
397 398 4.558470 GCATCAACACCAATCAATACAACG 59.442 41.667 0.00 0.00 0.00 4.10
398 399 5.618863 GCATCAACACCAATCAATACAACGA 60.619 40.000 0.00 0.00 0.00 3.85
399 400 6.554419 CATCAACACCAATCAATACAACGAT 58.446 36.000 0.00 0.00 0.00 3.73
400 401 6.567687 TCAACACCAATCAATACAACGATT 57.432 33.333 0.00 0.00 32.04 3.34
401 402 7.674471 TCAACACCAATCAATACAACGATTA 57.326 32.000 0.00 0.00 30.74 1.75
402 403 8.275015 TCAACACCAATCAATACAACGATTAT 57.725 30.769 0.00 0.00 30.74 1.28
403 404 8.735315 TCAACACCAATCAATACAACGATTATT 58.265 29.630 0.00 0.00 30.74 1.40
404 405 8.797215 CAACACCAATCAATACAACGATTATTG 58.203 33.333 0.00 0.00 38.00 1.90
405 406 8.050778 ACACCAATCAATACAACGATTATTGT 57.949 30.769 12.11 5.25 44.87 2.71
406 407 9.168451 ACACCAATCAATACAACGATTATTGTA 57.832 29.630 12.11 1.16 46.33 2.41
416 417 7.575332 ACAACGATTATTGTATTGGCAAAAC 57.425 32.000 3.01 0.00 41.04 2.43
417 418 7.148641 ACAACGATTATTGTATTGGCAAAACA 58.851 30.769 3.01 0.00 41.04 2.83
418 419 7.816995 ACAACGATTATTGTATTGGCAAAACAT 59.183 29.630 3.01 0.00 41.04 2.71
419 420 7.985634 ACGATTATTGTATTGGCAAAACATC 57.014 32.000 3.01 0.00 31.63 3.06
420 421 7.771183 ACGATTATTGTATTGGCAAAACATCT 58.229 30.769 3.01 0.00 31.63 2.90
421 422 7.915397 ACGATTATTGTATTGGCAAAACATCTC 59.085 33.333 3.01 0.00 31.63 2.75
422 423 8.131100 CGATTATTGTATTGGCAAAACATCTCT 58.869 33.333 3.01 0.00 31.63 3.10
423 424 9.807649 GATTATTGTATTGGCAAAACATCTCTT 57.192 29.630 3.01 0.00 31.63 2.85
424 425 9.807649 ATTATTGTATTGGCAAAACATCTCTTC 57.192 29.630 3.01 0.00 31.63 2.87
425 426 6.899393 TTGTATTGGCAAAACATCTCTTCT 57.101 33.333 3.01 0.00 0.00 2.85
426 427 7.994425 TTGTATTGGCAAAACATCTCTTCTA 57.006 32.000 3.01 0.00 0.00 2.10
427 428 7.377766 TGTATTGGCAAAACATCTCTTCTAC 57.622 36.000 3.01 0.00 0.00 2.59
428 429 6.939730 TGTATTGGCAAAACATCTCTTCTACA 59.060 34.615 3.01 0.79 0.00 2.74
429 430 6.899393 ATTGGCAAAACATCTCTTCTACAA 57.101 33.333 3.01 0.00 0.00 2.41
430 431 6.707440 TTGGCAAAACATCTCTTCTACAAA 57.293 33.333 0.00 0.00 0.00 2.83
431 432 6.707440 TGGCAAAACATCTCTTCTACAAAA 57.293 33.333 0.00 0.00 0.00 2.44
432 433 7.106439 TGGCAAAACATCTCTTCTACAAAAA 57.894 32.000 0.00 0.00 0.00 1.94
433 434 7.725251 TGGCAAAACATCTCTTCTACAAAAAT 58.275 30.769 0.00 0.00 0.00 1.82
434 435 7.652909 TGGCAAAACATCTCTTCTACAAAAATG 59.347 33.333 0.00 0.00 0.00 2.32
458 459 5.467035 TTTATTGAAGGCAAACTCTTGGG 57.533 39.130 0.00 0.00 37.59 4.12
463 464 1.140312 AGGCAAACTCTTGGGACAGA 58.860 50.000 0.00 0.00 42.39 3.41
469 470 2.821991 ACTCTTGGGACAGACTTTCG 57.178 50.000 0.00 0.00 42.39 3.46
473 474 0.534203 TTGGGACAGACTTTCGCACC 60.534 55.000 7.79 0.00 42.39 5.01
494 495 7.681246 CGCACCGCTTTATAAATAAAGTATACG 59.319 37.037 18.85 14.46 46.78 3.06
495 496 7.953710 GCACCGCTTTATAAATAAAGTATACGG 59.046 37.037 23.27 23.27 46.78 4.02
496 497 7.953710 CACCGCTTTATAAATAAAGTATACGGC 59.046 37.037 24.04 11.65 45.52 5.68
498 499 8.166706 CCGCTTTATAAATAAAGTATACGGCTG 58.833 37.037 18.85 0.00 46.78 4.85
511 512 5.709164 AGTATACGGCTGAACGATATAAGGT 59.291 40.000 0.00 0.00 37.61 3.50
522 523 5.321934 ACGATATAAGGTAGTGAGGAGGT 57.678 43.478 0.00 0.00 0.00 3.85
524 525 4.701171 CGATATAAGGTAGTGAGGAGGTCC 59.299 50.000 0.00 0.00 0.00 4.46
536 537 2.621070 AGGAGGTCCTCTTACAAAGCA 58.379 47.619 18.58 0.00 44.77 3.91
537 538 3.185455 AGGAGGTCCTCTTACAAAGCAT 58.815 45.455 18.58 0.00 44.77 3.79
542 543 6.408662 GGAGGTCCTCTTACAAAGCATATTCT 60.409 42.308 18.58 0.00 0.00 2.40
544 545 6.156949 AGGTCCTCTTACAAAGCATATTCTGA 59.843 38.462 0.00 0.00 0.00 3.27
551 552 9.679661 TCTTACAAAGCATATTCTGAATAACCA 57.320 29.630 13.62 0.00 0.00 3.67
557 558 8.757982 AAGCATATTCTGAATAACCAGACAAT 57.242 30.769 13.62 0.00 42.33 2.71
558 559 9.851686 AAGCATATTCTGAATAACCAGACAATA 57.148 29.630 13.62 0.00 42.33 1.90
569 570 9.807386 GAATAACCAGACAATATAATTACACGC 57.193 33.333 0.00 0.00 0.00 5.34
572 573 5.461078 ACCAGACAATATAATTACACGCGAC 59.539 40.000 15.93 0.00 0.00 5.19
580 581 0.986992 ATTACACGCGACTACGTTGC 59.013 50.000 15.93 0.00 45.75 4.17
582 583 1.855213 TACACGCGACTACGTTGCCT 61.855 55.000 15.93 0.00 45.75 4.75
602 603 8.343366 GTTGCCTAGAAATAATACAAGTAAGCC 58.657 37.037 0.00 0.00 0.00 4.35
604 605 7.715249 TGCCTAGAAATAATACAAGTAAGCCTG 59.285 37.037 0.00 0.00 0.00 4.85
616 617 0.108992 TAAGCCTGAGTACAACGCCG 60.109 55.000 0.00 0.00 0.00 6.46
622 623 1.870901 GAGTACAACGCCGCGGTAG 60.871 63.158 28.70 23.03 0.00 3.18
631 640 0.526954 CGCCGCGGTAGACACTTAAT 60.527 55.000 28.70 0.00 0.00 1.40
632 641 1.206523 GCCGCGGTAGACACTTAATC 58.793 55.000 28.70 0.08 0.00 1.75
635 644 2.373269 CGCGGTAGACACTTAATCTCG 58.627 52.381 0.00 0.00 0.00 4.04
638 647 3.605406 CGGTAGACACTTAATCTCGACG 58.395 50.000 0.00 0.00 0.00 5.12
662 673 3.478540 GCCATGAGGGGAACAGTAC 57.521 57.895 0.00 0.00 37.04 2.73
731 743 6.974622 GTGAAAACACAAGCATGGATTATAGG 59.025 38.462 0.00 0.00 0.00 2.57
732 744 5.520376 AAACACAAGCATGGATTATAGGC 57.480 39.130 0.00 0.00 0.00 3.93
733 745 3.141398 ACACAAGCATGGATTATAGGCG 58.859 45.455 0.00 0.00 0.00 5.52
734 746 2.095567 CACAAGCATGGATTATAGGCGC 60.096 50.000 0.00 0.00 0.00 6.53
834 897 8.195436 TGTTCCAGACTTCCTATAAATCTTACG 58.805 37.037 0.00 0.00 0.00 3.18
843 906 6.455647 TCCTATAAATCTTACGACCAGCATG 58.544 40.000 0.00 0.00 0.00 4.06
857 920 0.037303 AGCATGAGGACAACCACCAG 59.963 55.000 0.00 0.00 38.94 4.00
898 961 3.670625 AGTACAAGACGGCAAGCAATAA 58.329 40.909 0.00 0.00 0.00 1.40
899 962 3.684788 AGTACAAGACGGCAAGCAATAAG 59.315 43.478 0.00 0.00 0.00 1.73
900 963 1.200020 ACAAGACGGCAAGCAATAAGC 59.800 47.619 0.00 0.00 46.19 3.09
1102 1216 1.095600 TCCTCTGTCCATCTTCGACG 58.904 55.000 0.00 0.00 32.68 5.12
1410 1524 2.664185 CTGCTGCAGCTGACACGT 60.664 61.111 36.61 0.00 41.71 4.49
1683 1797 1.718757 GCATCGTCATCCACAAGGCC 61.719 60.000 0.00 0.00 33.74 5.19
2271 2385 4.518249 CCTTATTCCAAGAGAACCTCCAC 58.482 47.826 0.00 0.00 37.29 4.02
2312 2429 0.982852 TCCATGGAGTAGGTGGCCTG 60.983 60.000 11.44 0.00 34.61 4.85
2438 2568 9.710900 TGAGAATTGTATAGTGCTAATGTATGG 57.289 33.333 0.00 0.00 0.00 2.74
2476 2609 8.428186 TCTTGTACAAGTAACACGAATTTTCT 57.572 30.769 29.83 0.00 39.38 2.52
2477 2610 8.545420 TCTTGTACAAGTAACACGAATTTTCTC 58.455 33.333 29.83 0.00 39.38 2.87
2478 2611 7.773864 TGTACAAGTAACACGAATTTTCTCA 57.226 32.000 0.00 0.00 0.00 3.27
2479 2612 8.199176 TGTACAAGTAACACGAATTTTCTCAA 57.801 30.769 0.00 0.00 0.00 3.02
2480 2613 8.666573 TGTACAAGTAACACGAATTTTCTCAAA 58.333 29.630 0.00 0.00 0.00 2.69
2481 2614 9.493206 GTACAAGTAACACGAATTTTCTCAAAA 57.507 29.630 0.00 0.00 34.41 2.44
2482 2615 8.973835 ACAAGTAACACGAATTTTCTCAAAAA 57.026 26.923 0.00 0.00 38.66 1.94
2508 2641 9.739276 AAAATCCTAAATGATAACACTCACTCA 57.261 29.630 0.00 0.00 0.00 3.41
2509 2642 9.911788 AAATCCTAAATGATAACACTCACTCAT 57.088 29.630 0.00 0.00 0.00 2.90
2510 2643 8.899427 ATCCTAAATGATAACACTCACTCATG 57.101 34.615 0.00 0.00 0.00 3.07
2511 2644 7.851228 TCCTAAATGATAACACTCACTCATGT 58.149 34.615 0.00 0.00 0.00 3.21
2512 2645 7.765819 TCCTAAATGATAACACTCACTCATGTG 59.234 37.037 0.00 0.00 45.07 3.21
2513 2646 6.748333 AAATGATAACACTCACTCATGTGG 57.252 37.500 0.00 0.00 43.94 4.17
2514 2647 3.599343 TGATAACACTCACTCATGTGGC 58.401 45.455 0.00 0.00 43.94 5.01
2515 2648 3.007831 TGATAACACTCACTCATGTGGCA 59.992 43.478 0.00 0.00 43.94 4.92
2516 2649 2.574006 AACACTCACTCATGTGGCAT 57.426 45.000 0.00 0.00 43.94 4.40
2517 2650 2.574006 ACACTCACTCATGTGGCATT 57.426 45.000 0.00 0.00 43.94 3.56
2518 2651 2.867624 ACACTCACTCATGTGGCATTT 58.132 42.857 0.00 0.00 43.94 2.32
2519 2652 4.019792 ACACTCACTCATGTGGCATTTA 57.980 40.909 0.00 0.00 43.94 1.40
2520 2653 4.592942 ACACTCACTCATGTGGCATTTAT 58.407 39.130 0.00 0.00 43.94 1.40
2521 2654 4.637534 ACACTCACTCATGTGGCATTTATC 59.362 41.667 0.00 0.00 43.94 1.75
2522 2655 4.637091 CACTCACTCATGTGGCATTTATCA 59.363 41.667 0.00 0.00 43.94 2.15
2523 2656 5.124297 CACTCACTCATGTGGCATTTATCAA 59.876 40.000 0.00 0.00 43.94 2.57
2524 2657 5.124457 ACTCACTCATGTGGCATTTATCAAC 59.876 40.000 0.00 0.00 43.94 3.18
2525 2658 5.008980 TCACTCATGTGGCATTTATCAACA 58.991 37.500 0.00 0.00 43.94 3.33
2526 2659 5.097529 CACTCATGTGGCATTTATCAACAC 58.902 41.667 0.00 0.00 40.33 3.32
2527 2660 4.142622 ACTCATGTGGCATTTATCAACACG 60.143 41.667 0.00 0.00 34.93 4.49
2528 2661 2.627863 TGTGGCATTTATCAACACGC 57.372 45.000 0.00 0.00 34.93 5.34
2529 2662 1.201181 TGTGGCATTTATCAACACGCC 59.799 47.619 0.00 0.00 40.02 5.68
2530 2663 0.814457 TGGCATTTATCAACACGCCC 59.186 50.000 0.00 0.00 38.81 6.13
2531 2664 0.814457 GGCATTTATCAACACGCCCA 59.186 50.000 0.00 0.00 33.31 5.36
2532 2665 1.469079 GGCATTTATCAACACGCCCAC 60.469 52.381 0.00 0.00 33.31 4.61
2533 2666 1.201181 GCATTTATCAACACGCCCACA 59.799 47.619 0.00 0.00 0.00 4.17
2534 2667 2.731968 GCATTTATCAACACGCCCACAG 60.732 50.000 0.00 0.00 0.00 3.66
2535 2668 2.264005 TTTATCAACACGCCCACAGT 57.736 45.000 0.00 0.00 0.00 3.55
2536 2669 1.803334 TTATCAACACGCCCACAGTC 58.197 50.000 0.00 0.00 0.00 3.51
2537 2670 0.682292 TATCAACACGCCCACAGTCA 59.318 50.000 0.00 0.00 0.00 3.41
2538 2671 0.884704 ATCAACACGCCCACAGTCAC 60.885 55.000 0.00 0.00 0.00 3.67
2539 2672 1.523711 CAACACGCCCACAGTCACT 60.524 57.895 0.00 0.00 0.00 3.41
2540 2673 1.095228 CAACACGCCCACAGTCACTT 61.095 55.000 0.00 0.00 0.00 3.16
2545 2678 0.603707 CGCCCACAGTCACTTGATGT 60.604 55.000 0.00 0.00 0.00 3.06
2554 2688 3.675225 CAGTCACTTGATGTCGTTCGATT 59.325 43.478 0.00 0.00 0.00 3.34
2555 2689 3.921021 AGTCACTTGATGTCGTTCGATTC 59.079 43.478 0.00 0.44 0.00 2.52
2556 2690 3.673338 GTCACTTGATGTCGTTCGATTCA 59.327 43.478 0.00 2.94 0.00 2.57
2557 2691 4.327357 GTCACTTGATGTCGTTCGATTCAT 59.673 41.667 10.05 5.27 0.00 2.57
2574 2708 7.416817 TCGATTCATTTTGCACGAATATTGAT 58.583 30.769 0.00 0.00 29.67 2.57
2588 2722 5.924254 CGAATATTGATGCAATTGCCATCTT 59.076 36.000 26.94 19.52 41.18 2.40
2592 2726 3.363627 TGATGCAATTGCCATCTTGGTA 58.636 40.909 26.94 5.86 40.46 3.25
2601 2735 1.419387 GCCATCTTGGTAGAGAGCCAT 59.581 52.381 0.00 0.00 40.46 4.40
2639 2773 5.690865 TCATGTGGGGGTTATCATTTAGTC 58.309 41.667 0.00 0.00 0.00 2.59
2704 2838 2.482333 CCGGTCGTGTGGGCAAAAA 61.482 57.895 0.00 0.00 0.00 1.94
2711 2845 1.666888 CGTGTGGGCAAAAATGCTCTC 60.667 52.381 2.02 0.00 36.00 3.20
2743 2877 1.065551 CGCTCACACGGTGATAGATGA 59.934 52.381 16.29 6.67 41.94 2.92
2775 2909 3.009026 TGTGCATATGTGGCAACTAGTG 58.991 45.455 4.29 0.00 43.91 2.74
2785 2919 3.058914 GTGGCAACTAGTGAATCACACAC 60.059 47.826 16.38 8.50 44.82 3.82
2786 2920 4.350653 TGGCAACTAGTGAATCACACACG 61.351 47.826 16.38 3.26 44.82 4.49
2787 2921 6.533214 TGGCAACTAGTGAATCACACACGA 62.533 45.833 16.38 0.00 44.82 4.35
2796 2930 4.494484 TGAATCACACACGAGAACTATGG 58.506 43.478 0.00 0.00 0.00 2.74
2797 2931 4.021456 TGAATCACACACGAGAACTATGGT 60.021 41.667 0.00 0.00 0.00 3.55
2798 2932 4.537135 ATCACACACGAGAACTATGGTT 57.463 40.909 0.00 0.00 38.52 3.67
2799 2933 3.649073 TCACACACGAGAACTATGGTTG 58.351 45.455 0.00 0.00 35.58 3.77
2800 2934 3.319689 TCACACACGAGAACTATGGTTGA 59.680 43.478 0.00 0.00 35.58 3.18
2801 2935 3.428870 CACACACGAGAACTATGGTTGAC 59.571 47.826 0.00 0.00 35.58 3.18
2802 2936 2.993899 CACACGAGAACTATGGTTGACC 59.006 50.000 0.00 0.00 35.58 4.02
2859 2993 1.666054 TGGTTTAACCACACGTGACC 58.334 50.000 25.01 17.48 44.79 4.02
2880 3014 7.604927 GTGACCACTCCAATTAGTTACACATTA 59.395 37.037 0.00 0.00 30.95 1.90
2883 3017 8.107095 ACCACTCCAATTAGTTACACATTATGT 58.893 33.333 0.00 0.00 46.06 2.29
2909 3045 5.909621 TGTGGTAACTAGTATCACAGACC 57.090 43.478 16.75 8.25 46.75 3.85
2912 3048 3.631227 GGTAACTAGTATCACAGACCGCT 59.369 47.826 0.00 0.00 0.00 5.52
2917 3053 5.055812 ACTAGTATCACAGACCGCTACTAC 58.944 45.833 0.00 0.00 0.00 2.73
2975 3116 6.488344 TGGCAACTTCAATTAGTTACACATGA 59.512 34.615 0.00 0.00 36.24 3.07
3000 3141 7.796054 ACAACTAGATTTAGTGATACATGGCT 58.204 34.615 0.00 0.00 40.02 4.75
3016 3157 1.702401 TGGCTGACATGGGAACTACAA 59.298 47.619 0.00 0.00 0.00 2.41
3024 3165 8.850156 GCTGACATGGGAACTACAATTAATTAT 58.150 33.333 0.00 0.00 0.00 1.28
3065 3217 2.355837 ACACACGTTCGCGCTCAT 60.356 55.556 5.56 0.00 46.04 2.90
3066 3218 1.081041 ACACACGTTCGCGCTCATA 60.081 52.632 5.56 0.00 46.04 2.15
3092 3244 2.633657 GTGAGCAGTTGCCACACG 59.366 61.111 15.92 0.00 43.38 4.49
3095 3247 3.825160 GAGCAGTTGCCACACGGGA 62.825 63.158 0.00 0.00 43.38 5.14
3113 3265 2.203800 GATCGTGTGAGCCATCGTAA 57.796 50.000 0.00 0.00 0.00 3.18
3143 3295 4.261656 CCAAACGTGTGGGCAGTTTTAATA 60.262 41.667 17.75 0.00 36.12 0.98
3154 3306 4.202111 GGCAGTTTTAATATTCGCCCACAT 60.202 41.667 0.00 0.00 31.76 3.21
3170 3322 1.144057 CATAGGGTCGTGTGGGCTC 59.856 63.158 0.00 0.00 0.00 4.70
3174 3326 2.584391 GGGTCGTGTGGGCTCTCTT 61.584 63.158 0.00 0.00 0.00 2.85
3177 3329 1.174783 GTCGTGTGGGCTCTCTTCTA 58.825 55.000 0.00 0.00 0.00 2.10
3183 3335 2.042569 TGTGGGCTCTCTTCTAGGTACA 59.957 50.000 0.00 0.00 0.00 2.90
3187 3339 2.099427 GGCTCTCTTCTAGGTACAACCG 59.901 54.545 0.00 0.00 44.90 4.44
3188 3340 3.015327 GCTCTCTTCTAGGTACAACCGA 58.985 50.000 0.00 0.00 44.90 4.69
3193 3345 3.438087 TCTTCTAGGTACAACCGAACGAG 59.562 47.826 0.00 0.00 44.90 4.18
3206 3358 3.836176 AACGAGTCGTGTGGTCGGC 62.836 63.158 20.68 0.00 39.99 5.54
3247 3399 5.172934 GTGTGATAGTTATCGGTGTCCAAA 58.827 41.667 0.00 0.00 35.48 3.28
3248 3400 5.640357 GTGTGATAGTTATCGGTGTCCAAAA 59.360 40.000 0.00 0.00 35.48 2.44
3251 3403 6.018180 GTGATAGTTATCGGTGTCCAAAATCC 60.018 42.308 0.00 0.00 35.48 3.01
3252 3404 4.569719 AGTTATCGGTGTCCAAAATCCT 57.430 40.909 0.00 0.00 0.00 3.24
3253 3405 5.687166 AGTTATCGGTGTCCAAAATCCTA 57.313 39.130 0.00 0.00 0.00 2.94
3254 3406 6.057321 AGTTATCGGTGTCCAAAATCCTAA 57.943 37.500 0.00 0.00 0.00 2.69
3255 3407 6.478129 AGTTATCGGTGTCCAAAATCCTAAA 58.522 36.000 0.00 0.00 0.00 1.85
3256 3408 7.116736 AGTTATCGGTGTCCAAAATCCTAAAT 58.883 34.615 0.00 0.00 0.00 1.40
3257 3409 5.835113 ATCGGTGTCCAAAATCCTAAATG 57.165 39.130 0.00 0.00 0.00 2.32
3258 3410 4.912586 TCGGTGTCCAAAATCCTAAATGA 58.087 39.130 0.00 0.00 0.00 2.57
3260 3412 6.654959 TCGGTGTCCAAAATCCTAAATGATA 58.345 36.000 0.00 0.00 0.00 2.15
3261 3413 6.540914 TCGGTGTCCAAAATCCTAAATGATAC 59.459 38.462 0.00 0.00 0.00 2.24
3262 3414 6.542370 CGGTGTCCAAAATCCTAAATGATACT 59.458 38.462 0.00 0.00 0.00 2.12
3263 3415 7.467267 CGGTGTCCAAAATCCTAAATGATACTG 60.467 40.741 0.00 0.00 0.00 2.74
3264 3416 7.196331 GTGTCCAAAATCCTAAATGATACTGC 58.804 38.462 0.00 0.00 0.00 4.40
3265 3417 6.321181 TGTCCAAAATCCTAAATGATACTGCC 59.679 38.462 0.00 0.00 0.00 4.85
3266 3418 5.530915 TCCAAAATCCTAAATGATACTGCCG 59.469 40.000 0.00 0.00 0.00 5.69
3268 3420 6.485313 CCAAAATCCTAAATGATACTGCCGTA 59.515 38.462 0.00 0.00 0.00 4.02
3269 3421 7.012894 CCAAAATCCTAAATGATACTGCCGTAA 59.987 37.037 0.00 0.00 0.00 3.18
3270 3422 7.492352 AAATCCTAAATGATACTGCCGTAAC 57.508 36.000 0.00 0.00 0.00 2.50
3271 3423 5.864418 TCCTAAATGATACTGCCGTAACT 57.136 39.130 0.00 0.00 0.00 2.24
3272 3424 6.964807 TCCTAAATGATACTGCCGTAACTA 57.035 37.500 0.00 0.00 0.00 2.24
3275 3427 9.081204 TCCTAAATGATACTGCCGTAACTATAA 57.919 33.333 0.00 0.00 0.00 0.98
3276 3428 9.701098 CCTAAATGATACTGCCGTAACTATAAA 57.299 33.333 0.00 0.00 0.00 1.40
3279 3431 9.609346 AAATGATACTGCCGTAACTATAAAACT 57.391 29.630 0.00 0.00 0.00 2.66
3281 3433 6.477688 TGATACTGCCGTAACTATAAAACTGC 59.522 38.462 0.00 0.00 0.00 4.40
3282 3434 4.828829 ACTGCCGTAACTATAAAACTGCT 58.171 39.130 0.00 0.00 0.00 4.24
3285 3437 5.239351 TGCCGTAACTATAAAACTGCTGAA 58.761 37.500 0.00 0.00 0.00 3.02
3286 3438 5.878116 TGCCGTAACTATAAAACTGCTGAAT 59.122 36.000 0.00 0.00 0.00 2.57
3287 3439 6.373216 TGCCGTAACTATAAAACTGCTGAATT 59.627 34.615 0.00 0.00 0.00 2.17
3289 3441 8.392612 GCCGTAACTATAAAACTGCTGAATTAA 58.607 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.618837 TCACAGTAGACAAGAGTGGCC 59.381 52.381 0.00 0.00 30.22 5.36
2 3 3.601443 ATCACAGTAGACAAGAGTGGC 57.399 47.619 0.00 0.00 0.00 5.01
3 4 6.634805 ACATTATCACAGTAGACAAGAGTGG 58.365 40.000 0.00 0.00 0.00 4.00
5 6 7.468141 TGACATTATCACAGTAGACAAGAGT 57.532 36.000 0.00 0.00 29.99 3.24
7 8 6.333416 GCTGACATTATCACAGTAGACAAGA 58.667 40.000 0.00 0.00 34.60 3.02
9 10 5.102313 CGCTGACATTATCACAGTAGACAA 58.898 41.667 0.00 0.00 34.60 3.18
10 11 4.672409 CGCTGACATTATCACAGTAGACA 58.328 43.478 0.00 0.00 34.60 3.41
11 12 3.487574 GCGCTGACATTATCACAGTAGAC 59.512 47.826 0.00 0.00 34.60 2.59
12 13 3.706698 GCGCTGACATTATCACAGTAGA 58.293 45.455 0.00 0.00 34.60 2.59
13 14 2.469147 CGCGCTGACATTATCACAGTAG 59.531 50.000 5.56 0.00 34.60 2.57
16 17 0.578683 CCGCGCTGACATTATCACAG 59.421 55.000 5.56 0.00 32.37 3.66
18 19 0.577269 GACCGCGCTGACATTATCAC 59.423 55.000 5.61 0.00 32.37 3.06
19 20 0.459899 AGACCGCGCTGACATTATCA 59.540 50.000 5.61 0.00 35.45 2.15
20 21 2.052157 GTAGACCGCGCTGACATTATC 58.948 52.381 5.61 0.00 0.00 1.75
21 22 1.269621 GGTAGACCGCGCTGACATTAT 60.270 52.381 5.61 0.00 0.00 1.28
22 23 0.101759 GGTAGACCGCGCTGACATTA 59.898 55.000 5.61 0.00 0.00 1.90
23 24 1.153628 GGTAGACCGCGCTGACATT 60.154 57.895 5.61 0.00 0.00 2.71
24 25 2.005960 GAGGTAGACCGCGCTGACAT 62.006 60.000 5.61 0.00 42.08 3.06
25 26 2.675423 AGGTAGACCGCGCTGACA 60.675 61.111 5.61 0.00 42.08 3.58
26 27 2.102553 GAGGTAGACCGCGCTGAC 59.897 66.667 5.61 0.00 42.08 3.51
27 28 2.045242 AGAGGTAGACCGCGCTGA 60.045 61.111 5.61 0.00 40.98 4.26
28 29 2.409651 GAGAGGTAGACCGCGCTG 59.590 66.667 5.56 0.00 40.98 5.18
29 30 2.829458 GGAGAGGTAGACCGCGCT 60.829 66.667 5.56 0.00 40.98 5.92
30 31 4.253257 CGGAGAGGTAGACCGCGC 62.253 72.222 0.00 0.00 40.98 6.86
34 35 0.108281 GTTTGGCGGAGAGGTAGACC 60.108 60.000 0.00 0.00 0.00 3.85
35 36 0.108281 GGTTTGGCGGAGAGGTAGAC 60.108 60.000 0.00 0.00 0.00 2.59
36 37 1.601419 CGGTTTGGCGGAGAGGTAGA 61.601 60.000 0.00 0.00 0.00 2.59
37 38 1.153628 CGGTTTGGCGGAGAGGTAG 60.154 63.158 0.00 0.00 0.00 3.18
38 39 2.652095 CCGGTTTGGCGGAGAGGTA 61.652 63.158 0.00 0.00 0.00 3.08
39 40 4.016706 CCGGTTTGGCGGAGAGGT 62.017 66.667 0.00 0.00 0.00 3.85
40 41 2.652095 TACCGGTTTGGCGGAGAGG 61.652 63.158 15.04 0.00 43.94 3.69
41 42 1.447314 GTACCGGTTTGGCGGAGAG 60.447 63.158 15.04 0.00 43.94 3.20
42 43 2.208619 TGTACCGGTTTGGCGGAGA 61.209 57.895 15.04 0.00 43.94 3.71
43 44 2.030958 GTGTACCGGTTTGGCGGAG 61.031 63.158 15.04 0.00 43.94 4.63
44 45 2.030862 GTGTACCGGTTTGGCGGA 59.969 61.111 15.04 0.00 43.94 5.54
45 46 3.051479 GGTGTACCGGTTTGGCGG 61.051 66.667 15.04 0.00 43.94 6.13
46 47 1.641123 GATGGTGTACCGGTTTGGCG 61.641 60.000 15.04 0.00 43.94 5.69
47 48 1.641123 CGATGGTGTACCGGTTTGGC 61.641 60.000 15.04 1.34 43.94 4.52
48 49 0.037139 TCGATGGTGTACCGGTTTGG 60.037 55.000 15.04 0.00 46.41 3.28
49 50 1.073177 GTCGATGGTGTACCGGTTTG 58.927 55.000 15.04 0.00 39.43 2.93
50 51 0.388907 CGTCGATGGTGTACCGGTTT 60.389 55.000 15.04 0.00 39.43 3.27
51 52 1.213537 CGTCGATGGTGTACCGGTT 59.786 57.895 15.04 0.00 39.43 4.44
52 53 2.703798 CCGTCGATGGTGTACCGGT 61.704 63.158 13.98 13.98 39.43 5.28
53 54 2.103538 CCGTCGATGGTGTACCGG 59.896 66.667 15.98 0.00 39.43 5.28
54 55 1.226491 GTCCGTCGATGGTGTACCG 60.226 63.158 22.88 2.02 39.43 4.02
55 56 1.226491 CGTCCGTCGATGGTGTACC 60.226 63.158 22.88 6.74 42.86 3.34
56 57 1.796151 TCGTCCGTCGATGGTGTAC 59.204 57.895 22.88 13.07 44.01 2.90
57 58 4.299756 TCGTCCGTCGATGGTGTA 57.700 55.556 22.88 6.99 44.01 2.90
65 66 1.781429 CTCAATATGCTTCGTCCGTCG 59.219 52.381 0.00 0.00 41.41 5.12
66 67 1.523095 GCTCAATATGCTTCGTCCGTC 59.477 52.381 0.00 0.00 0.00 4.79
67 68 1.137086 AGCTCAATATGCTTCGTCCGT 59.863 47.619 0.00 0.00 37.52 4.69
68 69 1.789464 GAGCTCAATATGCTTCGTCCG 59.211 52.381 9.40 0.00 41.30 4.79
69 70 1.789464 CGAGCTCAATATGCTTCGTCC 59.211 52.381 15.40 0.00 41.30 4.79
70 71 2.732366 TCGAGCTCAATATGCTTCGTC 58.268 47.619 15.40 0.00 41.30 4.20
71 72 2.871182 TCGAGCTCAATATGCTTCGT 57.129 45.000 15.40 0.00 41.30 3.85
72 73 5.574443 TGAATATCGAGCTCAATATGCTTCG 59.426 40.000 15.40 0.00 41.30 3.79
73 74 6.589523 AGTGAATATCGAGCTCAATATGCTTC 59.410 38.462 15.40 7.00 41.30 3.86
74 75 6.462500 AGTGAATATCGAGCTCAATATGCTT 58.538 36.000 15.40 0.00 41.30 3.91
75 76 6.035368 AGTGAATATCGAGCTCAATATGCT 57.965 37.500 15.40 7.53 44.24 3.79
76 77 6.453527 CGAAGTGAATATCGAGCTCAATATGC 60.454 42.308 15.40 10.15 41.43 3.14
77 78 6.584184 ACGAAGTGAATATCGAGCTCAATATG 59.416 38.462 15.40 0.00 42.51 1.78
78 79 6.682746 ACGAAGTGAATATCGAGCTCAATAT 58.317 36.000 15.40 8.05 42.51 1.28
79 80 6.073327 ACGAAGTGAATATCGAGCTCAATA 57.927 37.500 15.40 5.54 42.51 1.90
80 81 4.938080 ACGAAGTGAATATCGAGCTCAAT 58.062 39.130 15.40 2.80 42.51 2.57
81 82 4.371855 ACGAAGTGAATATCGAGCTCAA 57.628 40.909 15.40 0.00 42.51 3.02
118 119 4.636435 ACCCGAACACGGCCAAGG 62.636 66.667 2.24 0.00 44.70 3.61
119 120 2.593436 AACCCGAACACGGCCAAG 60.593 61.111 2.24 0.00 44.70 3.61
120 121 2.592287 GAACCCGAACACGGCCAA 60.592 61.111 2.24 0.00 44.70 4.52
121 122 2.999739 GAAGAACCCGAACACGGCCA 63.000 60.000 2.24 0.00 44.70 5.36
122 123 2.281276 AAGAACCCGAACACGGCC 60.281 61.111 2.97 0.00 44.70 6.13
123 124 0.953960 ATGAAGAACCCGAACACGGC 60.954 55.000 2.97 0.00 44.70 5.68
124 125 0.796312 CATGAAGAACCCGAACACGG 59.204 55.000 0.00 0.00 45.51 4.94
125 126 1.194547 CACATGAAGAACCCGAACACG 59.805 52.381 0.00 0.00 0.00 4.49
126 127 1.069227 GCACATGAAGAACCCGAACAC 60.069 52.381 0.00 0.00 0.00 3.32
127 128 1.234821 GCACATGAAGAACCCGAACA 58.765 50.000 0.00 0.00 0.00 3.18
128 129 0.521735 GGCACATGAAGAACCCGAAC 59.478 55.000 0.00 0.00 0.00 3.95
129 130 0.953471 CGGCACATGAAGAACCCGAA 60.953 55.000 0.00 0.00 38.04 4.30
130 131 1.375396 CGGCACATGAAGAACCCGA 60.375 57.895 0.00 0.00 38.04 5.14
131 132 1.375396 TCGGCACATGAAGAACCCG 60.375 57.895 0.00 2.05 37.21 5.28
132 133 1.635663 CGTCGGCACATGAAGAACCC 61.636 60.000 0.00 0.00 0.00 4.11
133 134 0.669318 TCGTCGGCACATGAAGAACC 60.669 55.000 0.00 0.00 0.00 3.62
134 135 1.061131 CATCGTCGGCACATGAAGAAC 59.939 52.381 0.00 0.00 0.00 3.01
135 136 1.358877 CATCGTCGGCACATGAAGAA 58.641 50.000 0.00 0.00 0.00 2.52
136 137 1.083806 GCATCGTCGGCACATGAAGA 61.084 55.000 0.00 0.00 0.00 2.87
137 138 1.349627 GCATCGTCGGCACATGAAG 59.650 57.895 0.00 0.00 0.00 3.02
138 139 0.952984 TTGCATCGTCGGCACATGAA 60.953 50.000 0.00 0.00 41.75 2.57
139 140 1.375268 TTGCATCGTCGGCACATGA 60.375 52.632 0.00 0.00 41.75 3.07
140 141 1.226101 GTTGCATCGTCGGCACATG 60.226 57.895 0.00 0.00 41.75 3.21
141 142 1.638388 CTGTTGCATCGTCGGCACAT 61.638 55.000 0.00 0.00 41.75 3.21
142 143 2.280457 TGTTGCATCGTCGGCACA 60.280 55.556 0.00 0.00 41.75 4.57
143 144 1.841663 AACTGTTGCATCGTCGGCAC 61.842 55.000 0.00 0.00 41.75 5.01
144 145 1.163420 AAACTGTTGCATCGTCGGCA 61.163 50.000 0.00 0.00 40.00 5.69
145 146 0.725784 CAAACTGTTGCATCGTCGGC 60.726 55.000 0.00 0.00 0.00 5.54
146 147 3.366392 CAAACTGTTGCATCGTCGG 57.634 52.632 0.00 0.00 0.00 4.79
155 156 4.023450 AGTCATCACATCAGCAAACTGTTG 60.023 41.667 0.00 3.25 45.35 3.33
156 157 4.139786 AGTCATCACATCAGCAAACTGTT 58.860 39.130 0.00 0.00 44.77 3.16
157 158 3.748083 AGTCATCACATCAGCAAACTGT 58.252 40.909 0.00 0.00 44.77 3.55
158 159 5.163784 CCTTAGTCATCACATCAGCAAACTG 60.164 44.000 0.00 0.00 45.95 3.16
159 160 4.940046 CCTTAGTCATCACATCAGCAAACT 59.060 41.667 0.00 0.00 0.00 2.66
160 161 4.095483 CCCTTAGTCATCACATCAGCAAAC 59.905 45.833 0.00 0.00 0.00 2.93
161 162 4.019411 TCCCTTAGTCATCACATCAGCAAA 60.019 41.667 0.00 0.00 0.00 3.68
162 163 3.519107 TCCCTTAGTCATCACATCAGCAA 59.481 43.478 0.00 0.00 0.00 3.91
163 164 3.106827 TCCCTTAGTCATCACATCAGCA 58.893 45.455 0.00 0.00 0.00 4.41
164 165 3.827008 TCCCTTAGTCATCACATCAGC 57.173 47.619 0.00 0.00 0.00 4.26
165 166 4.514441 GCAATCCCTTAGTCATCACATCAG 59.486 45.833 0.00 0.00 0.00 2.90
166 167 4.454678 GCAATCCCTTAGTCATCACATCA 58.545 43.478 0.00 0.00 0.00 3.07
167 168 3.817647 GGCAATCCCTTAGTCATCACATC 59.182 47.826 0.00 0.00 0.00 3.06
168 169 3.461085 AGGCAATCCCTTAGTCATCACAT 59.539 43.478 0.00 0.00 43.06 3.21
169 170 2.846206 AGGCAATCCCTTAGTCATCACA 59.154 45.455 0.00 0.00 43.06 3.58
170 171 3.567478 AGGCAATCCCTTAGTCATCAC 57.433 47.619 0.00 0.00 43.06 3.06
171 172 4.298626 AGTAGGCAATCCCTTAGTCATCA 58.701 43.478 0.00 0.00 43.06 3.07
172 173 4.262678 GGAGTAGGCAATCCCTTAGTCATC 60.263 50.000 0.00 0.00 43.06 2.92
173 174 3.648545 GGAGTAGGCAATCCCTTAGTCAT 59.351 47.826 0.00 0.00 43.06 3.06
174 175 3.039011 GGAGTAGGCAATCCCTTAGTCA 58.961 50.000 0.00 0.00 43.06 3.41
175 176 3.755112 GGAGTAGGCAATCCCTTAGTC 57.245 52.381 0.00 0.00 43.06 2.59
193 194 0.886563 GAAACTCCTCGAAGACGGGA 59.113 55.000 0.00 0.00 43.41 5.14
194 195 0.456312 CGAAACTCCTCGAAGACGGG 60.456 60.000 0.00 0.00 41.44 5.28
195 196 0.456312 CCGAAACTCCTCGAAGACGG 60.456 60.000 0.00 0.00 41.44 4.79
196 197 0.240411 ACCGAAACTCCTCGAAGACG 59.760 55.000 0.00 0.00 41.44 4.18
197 198 1.402588 GGACCGAAACTCCTCGAAGAC 60.403 57.143 0.00 0.00 41.44 3.01
198 199 0.886563 GGACCGAAACTCCTCGAAGA 59.113 55.000 0.00 0.00 41.44 2.87
199 200 0.601558 TGGACCGAAACTCCTCGAAG 59.398 55.000 0.00 0.00 41.44 3.79
200 201 0.601558 CTGGACCGAAACTCCTCGAA 59.398 55.000 0.00 0.00 41.44 3.71
201 202 0.538977 ACTGGACCGAAACTCCTCGA 60.539 55.000 0.00 0.00 41.44 4.04
202 203 0.109226 GACTGGACCGAAACTCCTCG 60.109 60.000 0.00 0.00 38.58 4.63
203 204 1.202817 GAGACTGGACCGAAACTCCTC 59.797 57.143 0.00 0.00 0.00 3.71
204 205 1.203075 AGAGACTGGACCGAAACTCCT 60.203 52.381 0.00 0.00 0.00 3.69
205 206 1.067495 CAGAGACTGGACCGAAACTCC 60.067 57.143 0.00 0.00 0.00 3.85
206 207 1.614413 ACAGAGACTGGACCGAAACTC 59.386 52.381 0.00 0.00 35.51 3.01
207 208 1.341531 CACAGAGACTGGACCGAAACT 59.658 52.381 0.00 0.00 35.51 2.66
208 209 1.068741 ACACAGAGACTGGACCGAAAC 59.931 52.381 0.00 0.00 35.51 2.78
209 210 1.340248 GACACAGAGACTGGACCGAAA 59.660 52.381 0.00 0.00 35.51 3.46
210 211 0.959553 GACACAGAGACTGGACCGAA 59.040 55.000 0.00 0.00 35.51 4.30
211 212 0.110678 AGACACAGAGACTGGACCGA 59.889 55.000 0.00 0.00 35.51 4.69
212 213 0.523966 GAGACACAGAGACTGGACCG 59.476 60.000 0.00 0.00 35.51 4.79
213 214 0.892063 GGAGACACAGAGACTGGACC 59.108 60.000 0.00 0.00 35.51 4.46
214 215 0.523966 CGGAGACACAGAGACTGGAC 59.476 60.000 0.00 0.00 35.51 4.02
215 216 0.609406 CCGGAGACACAGAGACTGGA 60.609 60.000 0.00 0.00 35.51 3.86
216 217 1.886585 CCGGAGACACAGAGACTGG 59.113 63.158 0.00 0.00 35.51 4.00
217 218 1.214062 GCCGGAGACACAGAGACTG 59.786 63.158 5.05 0.00 37.52 3.51
218 219 2.336478 CGCCGGAGACACAGAGACT 61.336 63.158 5.05 0.00 0.00 3.24
219 220 2.179517 CGCCGGAGACACAGAGAC 59.820 66.667 5.05 0.00 0.00 3.36
220 221 2.033602 TCGCCGGAGACACAGAGA 59.966 61.111 5.05 0.00 0.00 3.10
221 222 2.179517 GTCGCCGGAGACACAGAG 59.820 66.667 30.48 0.00 40.65 3.35
222 223 3.733960 CGTCGCCGGAGACACAGA 61.734 66.667 33.16 5.80 40.98 3.41
225 226 4.719369 AAGCGTCGCCGGAGACAC 62.719 66.667 33.16 25.80 40.98 3.67
226 227 4.415332 GAAGCGTCGCCGGAGACA 62.415 66.667 33.16 0.13 40.98 3.41
236 237 3.564027 CCCGGCATTCGAAGCGTC 61.564 66.667 3.35 0.00 42.43 5.19
268 269 5.014202 ACAAAATACATACTCAACACCCCC 58.986 41.667 0.00 0.00 0.00 5.40
269 270 6.882678 AGTACAAAATACATACTCAACACCCC 59.117 38.462 0.00 0.00 0.00 4.95
270 271 7.625606 GCAGTACAAAATACATACTCAACACCC 60.626 40.741 0.00 0.00 0.00 4.61
271 272 7.094975 TGCAGTACAAAATACATACTCAACACC 60.095 37.037 0.00 0.00 0.00 4.16
272 273 7.744715 GTGCAGTACAAAATACATACTCAACAC 59.255 37.037 0.00 0.00 0.00 3.32
273 274 7.359681 CGTGCAGTACAAAATACATACTCAACA 60.360 37.037 0.00 0.00 0.00 3.33
274 275 6.953743 CGTGCAGTACAAAATACATACTCAAC 59.046 38.462 0.00 0.00 0.00 3.18
275 276 6.647481 ACGTGCAGTACAAAATACATACTCAA 59.353 34.615 0.00 0.00 0.00 3.02
276 277 6.090223 CACGTGCAGTACAAAATACATACTCA 59.910 38.462 0.82 0.00 0.00 3.41
277 278 6.090358 ACACGTGCAGTACAAAATACATACTC 59.910 38.462 17.22 0.00 0.00 2.59
278 279 5.929992 ACACGTGCAGTACAAAATACATACT 59.070 36.000 17.22 0.00 0.00 2.12
279 280 6.160664 ACACGTGCAGTACAAAATACATAC 57.839 37.500 17.22 0.00 0.00 2.39
280 281 8.384365 CAATACACGTGCAGTACAAAATACATA 58.616 33.333 17.22 0.00 0.00 2.29
281 282 6.978343 ATACACGTGCAGTACAAAATACAT 57.022 33.333 17.22 0.00 0.00 2.29
282 283 6.347806 CCAATACACGTGCAGTACAAAATACA 60.348 38.462 17.22 0.00 0.00 2.29
283 284 6.019152 CCAATACACGTGCAGTACAAAATAC 58.981 40.000 17.22 0.00 0.00 1.89
284 285 5.932883 TCCAATACACGTGCAGTACAAAATA 59.067 36.000 17.22 0.00 0.00 1.40
285 286 4.757657 TCCAATACACGTGCAGTACAAAAT 59.242 37.500 17.22 0.00 0.00 1.82
286 287 4.127907 TCCAATACACGTGCAGTACAAAA 58.872 39.130 17.22 0.00 0.00 2.44
287 288 3.729966 TCCAATACACGTGCAGTACAAA 58.270 40.909 17.22 0.00 0.00 2.83
288 289 3.243941 ACTCCAATACACGTGCAGTACAA 60.244 43.478 17.22 0.00 0.00 2.41
289 290 2.297880 ACTCCAATACACGTGCAGTACA 59.702 45.455 17.22 0.00 0.00 2.90
290 291 2.955614 ACTCCAATACACGTGCAGTAC 58.044 47.619 17.22 0.00 0.00 2.73
291 292 3.243941 ACAACTCCAATACACGTGCAGTA 60.244 43.478 17.22 0.36 0.00 2.74
292 293 2.143122 CAACTCCAATACACGTGCAGT 58.857 47.619 17.22 0.00 0.00 4.40
293 294 2.096268 CACAACTCCAATACACGTGCAG 60.096 50.000 17.22 4.66 0.00 4.41
294 295 1.870402 CACAACTCCAATACACGTGCA 59.130 47.619 17.22 2.06 0.00 4.57
295 296 1.196808 CCACAACTCCAATACACGTGC 59.803 52.381 17.22 0.00 0.00 5.34
296 297 1.196808 GCCACAACTCCAATACACGTG 59.803 52.381 15.48 15.48 0.00 4.49
297 298 1.519408 GCCACAACTCCAATACACGT 58.481 50.000 0.00 0.00 0.00 4.49
298 299 0.802494 GGCCACAACTCCAATACACG 59.198 55.000 0.00 0.00 0.00 4.49
299 300 1.173913 GGGCCACAACTCCAATACAC 58.826 55.000 4.39 0.00 0.00 2.90
300 301 0.774276 TGGGCCACAACTCCAATACA 59.226 50.000 0.00 0.00 0.00 2.29
301 302 1.173913 GTGGGCCACAACTCCAATAC 58.826 55.000 31.26 0.00 34.08 1.89
302 303 0.039035 GGTGGGCCACAACTCCAATA 59.961 55.000 35.69 0.00 35.86 1.90
303 304 1.228862 GGTGGGCCACAACTCCAAT 60.229 57.895 35.69 0.00 35.86 3.16
304 305 2.197324 GGTGGGCCACAACTCCAA 59.803 61.111 35.69 0.00 35.86 3.53
305 306 2.776526 AGGTGGGCCACAACTCCA 60.777 61.111 35.69 0.00 46.59 3.86
309 310 1.299976 CTAGGAGGTGGGCCACAAC 59.700 63.158 35.69 26.73 35.86 3.32
310 311 1.151899 ACTAGGAGGTGGGCCACAA 60.152 57.895 35.69 15.37 35.86 3.33
311 312 1.612442 GACTAGGAGGTGGGCCACA 60.612 63.158 35.69 15.84 35.86 4.17
312 313 0.910088 AAGACTAGGAGGTGGGCCAC 60.910 60.000 28.69 28.69 37.19 5.01
313 314 0.909610 CAAGACTAGGAGGTGGGCCA 60.910 60.000 0.00 0.00 37.19 5.36
314 315 0.910088 ACAAGACTAGGAGGTGGGCC 60.910 60.000 0.00 0.00 0.00 5.80
315 316 1.861982 TACAAGACTAGGAGGTGGGC 58.138 55.000 0.00 0.00 0.00 5.36
316 317 4.805744 ACTATACAAGACTAGGAGGTGGG 58.194 47.826 0.00 0.00 0.00 4.61
317 318 5.892119 TCAACTATACAAGACTAGGAGGTGG 59.108 44.000 0.00 0.00 0.00 4.61
318 319 6.039941 CCTCAACTATACAAGACTAGGAGGTG 59.960 46.154 0.00 0.00 34.83 4.00
319 320 6.130569 CCTCAACTATACAAGACTAGGAGGT 58.869 44.000 0.00 0.00 34.83 3.85
320 321 6.130569 ACCTCAACTATACAAGACTAGGAGG 58.869 44.000 0.00 0.00 42.90 4.30
321 322 8.212312 TCTACCTCAACTATACAAGACTAGGAG 58.788 40.741 0.00 0.00 0.00 3.69
322 323 8.098963 TCTACCTCAACTATACAAGACTAGGA 57.901 38.462 0.00 0.00 0.00 2.94
323 324 7.446013 CCTCTACCTCAACTATACAAGACTAGG 59.554 44.444 0.00 0.00 0.00 3.02
324 325 7.040961 GCCTCTACCTCAACTATACAAGACTAG 60.041 44.444 0.00 0.00 0.00 2.57
325 326 6.771749 GCCTCTACCTCAACTATACAAGACTA 59.228 42.308 0.00 0.00 0.00 2.59
326 327 5.595133 GCCTCTACCTCAACTATACAAGACT 59.405 44.000 0.00 0.00 0.00 3.24
327 328 5.221283 GGCCTCTACCTCAACTATACAAGAC 60.221 48.000 0.00 0.00 0.00 3.01
328 329 4.894114 GGCCTCTACCTCAACTATACAAGA 59.106 45.833 0.00 0.00 0.00 3.02
329 330 4.896482 AGGCCTCTACCTCAACTATACAAG 59.104 45.833 0.00 0.00 33.62 3.16
330 331 4.880164 AGGCCTCTACCTCAACTATACAA 58.120 43.478 0.00 0.00 33.62 2.41
331 332 4.537945 AGGCCTCTACCTCAACTATACA 57.462 45.455 0.00 0.00 33.62 2.29
332 333 5.221481 GGAAAGGCCTCTACCTCAACTATAC 60.221 48.000 5.23 0.00 39.93 1.47
333 334 4.900054 GGAAAGGCCTCTACCTCAACTATA 59.100 45.833 5.23 0.00 39.93 1.31
334 335 3.712218 GGAAAGGCCTCTACCTCAACTAT 59.288 47.826 5.23 0.00 39.93 2.12
335 336 3.105283 GGAAAGGCCTCTACCTCAACTA 58.895 50.000 5.23 0.00 39.93 2.24
336 337 1.909986 GGAAAGGCCTCTACCTCAACT 59.090 52.381 5.23 0.00 39.93 3.16
337 338 1.909986 AGGAAAGGCCTCTACCTCAAC 59.090 52.381 5.23 0.00 46.97 3.18
338 339 2.344093 AGGAAAGGCCTCTACCTCAA 57.656 50.000 5.23 0.00 46.97 3.02
348 349 9.095065 CACGTATATATAATACAAGGAAAGGCC 57.905 37.037 0.00 0.00 0.00 5.19
349 350 8.601476 GCACGTATATATAATACAAGGAAAGGC 58.399 37.037 0.00 0.00 0.00 4.35
350 351 9.647797 TGCACGTATATATAATACAAGGAAAGG 57.352 33.333 0.00 0.00 0.00 3.11
358 359 9.361315 GGTGTTGATGCACGTATATATAATACA 57.639 33.333 0.00 0.00 40.08 2.29
359 360 9.361315 TGGTGTTGATGCACGTATATATAATAC 57.639 33.333 0.00 0.00 40.08 1.89
360 361 9.930693 TTGGTGTTGATGCACGTATATATAATA 57.069 29.630 0.00 0.00 40.08 0.98
361 362 8.840833 TTGGTGTTGATGCACGTATATATAAT 57.159 30.769 0.00 0.00 40.08 1.28
362 363 8.840833 ATTGGTGTTGATGCACGTATATATAA 57.159 30.769 0.00 0.00 40.08 0.98
363 364 8.091449 TGATTGGTGTTGATGCACGTATATATA 58.909 33.333 0.00 0.00 40.08 0.86
364 365 6.934083 TGATTGGTGTTGATGCACGTATATAT 59.066 34.615 0.00 0.00 40.08 0.86
365 366 6.284459 TGATTGGTGTTGATGCACGTATATA 58.716 36.000 0.00 0.00 40.08 0.86
366 367 5.122519 TGATTGGTGTTGATGCACGTATAT 58.877 37.500 0.00 0.00 40.08 0.86
367 368 4.508662 TGATTGGTGTTGATGCACGTATA 58.491 39.130 0.00 0.00 40.08 1.47
368 369 3.342719 TGATTGGTGTTGATGCACGTAT 58.657 40.909 0.00 0.00 40.08 3.06
369 370 2.772287 TGATTGGTGTTGATGCACGTA 58.228 42.857 0.00 0.00 40.08 3.57
370 371 1.603456 TGATTGGTGTTGATGCACGT 58.397 45.000 0.00 0.00 40.08 4.49
371 372 2.702898 TTGATTGGTGTTGATGCACG 57.297 45.000 0.00 0.00 40.08 5.34
372 373 5.058149 TGTATTGATTGGTGTTGATGCAC 57.942 39.130 0.00 0.00 38.56 4.57
373 374 5.468592 GTTGTATTGATTGGTGTTGATGCA 58.531 37.500 0.00 0.00 0.00 3.96
374 375 4.558470 CGTTGTATTGATTGGTGTTGATGC 59.442 41.667 0.00 0.00 0.00 3.91
375 376 5.937187 TCGTTGTATTGATTGGTGTTGATG 58.063 37.500 0.00 0.00 0.00 3.07
376 377 6.757897 ATCGTTGTATTGATTGGTGTTGAT 57.242 33.333 0.00 0.00 0.00 2.57
377 378 6.567687 AATCGTTGTATTGATTGGTGTTGA 57.432 33.333 0.00 0.00 33.72 3.18
378 379 8.797215 CAATAATCGTTGTATTGATTGGTGTTG 58.203 33.333 8.74 0.00 40.07 3.33
379 380 8.519526 ACAATAATCGTTGTATTGATTGGTGTT 58.480 29.630 16.73 0.00 40.35 3.32
380 381 8.050778 ACAATAATCGTTGTATTGATTGGTGT 57.949 30.769 16.73 0.22 40.35 4.16
391 392 8.297426 TGTTTTGCCAATACAATAATCGTTGTA 58.703 29.630 0.00 2.41 45.55 2.41
392 393 7.148641 TGTTTTGCCAATACAATAATCGTTGT 58.851 30.769 0.00 0.00 44.09 3.32
393 394 7.573916 TGTTTTGCCAATACAATAATCGTTG 57.426 32.000 0.00 0.00 35.25 4.10
394 395 8.250332 AGATGTTTTGCCAATACAATAATCGTT 58.750 29.630 4.83 0.00 0.00 3.85
395 396 7.771183 AGATGTTTTGCCAATACAATAATCGT 58.229 30.769 4.83 0.00 0.00 3.73
396 397 8.131100 AGAGATGTTTTGCCAATACAATAATCG 58.869 33.333 4.83 0.00 0.00 3.34
397 398 9.807649 AAGAGATGTTTTGCCAATACAATAATC 57.192 29.630 4.83 0.00 0.00 1.75
398 399 9.807649 GAAGAGATGTTTTGCCAATACAATAAT 57.192 29.630 4.83 0.00 0.00 1.28
399 400 9.023962 AGAAGAGATGTTTTGCCAATACAATAA 57.976 29.630 4.83 0.00 0.00 1.40
400 401 8.579850 AGAAGAGATGTTTTGCCAATACAATA 57.420 30.769 4.83 0.00 0.00 1.90
401 402 7.472334 AGAAGAGATGTTTTGCCAATACAAT 57.528 32.000 4.83 0.00 0.00 2.71
402 403 6.899393 AGAAGAGATGTTTTGCCAATACAA 57.101 33.333 4.83 0.00 0.00 2.41
403 404 6.939730 TGTAGAAGAGATGTTTTGCCAATACA 59.060 34.615 3.20 3.20 0.00 2.29
404 405 7.377766 TGTAGAAGAGATGTTTTGCCAATAC 57.622 36.000 0.00 0.00 0.00 1.89
405 406 7.994425 TTGTAGAAGAGATGTTTTGCCAATA 57.006 32.000 0.00 0.00 0.00 1.90
406 407 6.899393 TTGTAGAAGAGATGTTTTGCCAAT 57.101 33.333 0.00 0.00 0.00 3.16
407 408 6.707440 TTTGTAGAAGAGATGTTTTGCCAA 57.293 33.333 0.00 0.00 0.00 4.52
408 409 6.707440 TTTTGTAGAAGAGATGTTTTGCCA 57.293 33.333 0.00 0.00 0.00 4.92
409 410 7.653311 ACATTTTTGTAGAAGAGATGTTTTGCC 59.347 33.333 0.00 0.00 0.00 4.52
410 411 8.579682 ACATTTTTGTAGAAGAGATGTTTTGC 57.420 30.769 0.00 0.00 0.00 3.68
422 423 9.823647 TGCCTTCAATAAAACATTTTTGTAGAA 57.176 25.926 0.00 0.00 0.00 2.10
423 424 9.823647 TTGCCTTCAATAAAACATTTTTGTAGA 57.176 25.926 0.00 0.00 0.00 2.59
426 427 8.955388 AGTTTGCCTTCAATAAAACATTTTTGT 58.045 25.926 0.00 0.00 35.46 2.83
427 428 9.437045 GAGTTTGCCTTCAATAAAACATTTTTG 57.563 29.630 0.00 0.00 35.46 2.44
428 429 9.394767 AGAGTTTGCCTTCAATAAAACATTTTT 57.605 25.926 0.00 0.00 35.46 1.94
429 430 8.962884 AGAGTTTGCCTTCAATAAAACATTTT 57.037 26.923 0.00 0.00 35.46 1.82
430 431 8.829612 CAAGAGTTTGCCTTCAATAAAACATTT 58.170 29.630 0.00 0.00 35.46 2.32
431 432 7.442062 CCAAGAGTTTGCCTTCAATAAAACATT 59.558 33.333 0.00 0.00 35.46 2.71
432 433 6.930722 CCAAGAGTTTGCCTTCAATAAAACAT 59.069 34.615 0.00 0.00 35.46 2.71
433 434 6.279882 CCAAGAGTTTGCCTTCAATAAAACA 58.720 36.000 0.00 0.00 35.46 2.83
434 435 5.696270 CCCAAGAGTTTGCCTTCAATAAAAC 59.304 40.000 0.00 0.00 32.79 2.43
458 459 1.222115 AAGCGGTGCGAAAGTCTGTC 61.222 55.000 0.00 0.00 0.00 3.51
463 464 4.957759 ATTTATAAAGCGGTGCGAAAGT 57.042 36.364 3.94 0.00 0.00 2.66
494 495 5.449107 TCACTACCTTATATCGTTCAGCC 57.551 43.478 0.00 0.00 0.00 4.85
495 496 5.241064 TCCTCACTACCTTATATCGTTCAGC 59.759 44.000 0.00 0.00 0.00 4.26
496 497 6.072397 CCTCCTCACTACCTTATATCGTTCAG 60.072 46.154 0.00 0.00 0.00 3.02
498 499 5.769162 ACCTCCTCACTACCTTATATCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
500 501 5.315348 GACCTCCTCACTACCTTATATCGT 58.685 45.833 0.00 0.00 0.00 3.73
501 502 4.701171 GGACCTCCTCACTACCTTATATCG 59.299 50.000 0.00 0.00 0.00 2.92
502 503 5.894653 AGGACCTCCTCACTACCTTATATC 58.105 45.833 0.00 0.00 44.77 1.63
527 528 9.679661 TCTGGTTATTCAGAATATGCTTTGTAA 57.320 29.630 3.59 0.00 40.43 2.41
529 530 7.611467 TGTCTGGTTATTCAGAATATGCTTTGT 59.389 33.333 3.59 0.00 44.30 2.83
544 545 8.492748 CGCGTGTAATTATATTGTCTGGTTATT 58.507 33.333 0.00 0.00 0.00 1.40
551 552 6.576313 CGTAGTCGCGTGTAATTATATTGTCT 59.424 38.462 5.77 0.00 0.00 3.41
557 558 4.437495 GCAACGTAGTCGCGTGTAATTATA 59.563 41.667 5.77 0.00 45.00 0.98
558 559 3.241322 GCAACGTAGTCGCGTGTAATTAT 59.759 43.478 5.77 0.00 45.00 1.28
559 560 2.593775 GCAACGTAGTCGCGTGTAATTA 59.406 45.455 5.77 0.00 45.00 1.40
560 561 1.387756 GCAACGTAGTCGCGTGTAATT 59.612 47.619 5.77 0.00 45.00 1.40
561 562 0.986992 GCAACGTAGTCGCGTGTAAT 59.013 50.000 5.77 0.00 45.00 1.89
562 563 1.003262 GGCAACGTAGTCGCGTGTAA 61.003 55.000 5.77 0.00 45.00 2.41
563 564 1.442520 GGCAACGTAGTCGCGTGTA 60.443 57.895 5.77 0.00 45.00 2.90
569 570 6.914215 TGTATTATTTCTAGGCAACGTAGTCG 59.086 38.462 0.00 0.00 45.00 4.18
572 573 8.644318 ACTTGTATTATTTCTAGGCAACGTAG 57.356 34.615 0.00 0.00 46.39 3.51
580 581 9.482627 CTCAGGCTTACTTGTATTATTTCTAGG 57.517 37.037 0.00 0.00 0.00 3.02
602 603 2.531927 TACCGCGGCGTTGTACTCAG 62.532 60.000 28.58 4.79 0.00 3.35
604 605 1.870901 CTACCGCGGCGTTGTACTC 60.871 63.158 28.58 0.00 0.00 2.59
616 617 3.361414 GTCGAGATTAAGTGTCTACCGC 58.639 50.000 0.00 0.00 0.00 5.68
622 623 3.297461 CGTTGTCGTCGAGATTAAGTGTC 59.703 47.826 0.00 0.00 0.00 3.67
631 640 1.443702 CATGGCGTTGTCGTCGAGA 60.444 57.895 0.00 0.00 45.30 4.04
632 641 1.406219 CTCATGGCGTTGTCGTCGAG 61.406 60.000 0.00 0.00 45.30 4.04
635 644 2.100631 CCCTCATGGCGTTGTCGTC 61.101 63.158 0.00 0.00 42.45 4.20
638 647 1.002624 TTCCCCTCATGGCGTTGTC 60.003 57.895 0.00 0.00 0.00 3.18
654 665 3.111098 ACGTCACAAGTTCGTACTGTTC 58.889 45.455 0.00 0.00 36.05 3.18
662 673 1.452717 GTGCAAACGTCACAAGTTCG 58.547 50.000 1.29 0.00 34.73 3.95
834 897 0.036732 TGGTTGTCCTCATGCTGGTC 59.963 55.000 4.83 0.98 34.23 4.02
843 906 3.197766 TGTATGATCTGGTGGTTGTCCTC 59.802 47.826 0.00 0.00 34.23 3.71
857 920 7.090808 TGTACTCTTGTGTTCTGTGTATGATC 58.909 38.462 0.00 0.00 0.00 2.92
898 961 0.107831 TTGTACGTGGAGGCTTTGCT 59.892 50.000 0.00 0.00 0.00 3.91
899 962 0.517316 CTTGTACGTGGAGGCTTTGC 59.483 55.000 0.00 0.00 0.00 3.68
900 963 0.517316 GCTTGTACGTGGAGGCTTTG 59.483 55.000 0.00 0.00 0.00 2.77
901 964 0.396811 AGCTTGTACGTGGAGGCTTT 59.603 50.000 0.00 0.00 0.00 3.51
902 965 0.037232 GAGCTTGTACGTGGAGGCTT 60.037 55.000 0.00 0.00 0.00 4.35
1102 1216 1.810030 GCATCTCGAACGTCACCCC 60.810 63.158 0.00 0.00 0.00 4.95
1251 1365 0.179134 GGTCGTTGAGGATGACGGAG 60.179 60.000 0.00 0.00 43.83 4.63
1281 1395 1.079819 CACGGACGCCTCAATCAGT 60.080 57.895 0.00 0.00 0.00 3.41
1410 1524 3.876589 GAGCGAGCCACACCGGAAA 62.877 63.158 9.46 0.00 36.56 3.13
1515 1629 3.017581 GGGAGGCACATGGGGAGT 61.018 66.667 0.00 0.00 0.00 3.85
1542 1656 3.808728 CTTGAAGAGGTCTTTGTGGTGA 58.191 45.455 0.00 0.00 36.11 4.02
1660 1774 2.079158 CTTGTGGATGACGATGCTGTT 58.921 47.619 0.00 0.00 0.00 3.16
1664 1778 1.718757 GGCCTTGTGGATGACGATGC 61.719 60.000 0.00 0.00 34.57 3.91
1683 1797 3.604582 GATGAAGTCCTTGGAGAAGTGG 58.395 50.000 0.00 0.00 0.00 4.00
1956 2070 2.284625 TCGTGGATCACCTGGGCT 60.285 61.111 0.00 0.00 37.04 5.19
2163 2277 1.388547 GGAAGTATGCCGGCATGAAA 58.611 50.000 44.59 27.42 37.82 2.69
2271 2385 0.110056 AGCAGCATTCTTTGAACGCG 60.110 50.000 3.53 3.53 0.00 6.01
2312 2429 7.373441 CACTGTTTCTTCGACAAATTAACAGTC 59.627 37.037 17.50 3.39 42.92 3.51
2431 2561 7.568349 ACAAGATAACATCTGTGTCCATACAT 58.432 34.615 0.00 0.00 40.13 2.29
2438 2568 7.891183 ACTTGTACAAGATAACATCTGTGTC 57.109 36.000 36.14 0.00 40.13 3.67
2482 2615 9.739276 TGAGTGAGTGTTATCATTTAGGATTTT 57.261 29.630 0.00 0.00 0.00 1.82
2483 2616 9.911788 ATGAGTGAGTGTTATCATTTAGGATTT 57.088 29.630 0.00 0.00 0.00 2.17
2484 2617 9.334947 CATGAGTGAGTGTTATCATTTAGGATT 57.665 33.333 0.00 0.00 30.09 3.01
2485 2618 8.489489 ACATGAGTGAGTGTTATCATTTAGGAT 58.511 33.333 0.00 0.00 30.09 3.24
2486 2619 7.851228 ACATGAGTGAGTGTTATCATTTAGGA 58.149 34.615 0.00 0.00 30.09 2.94
2503 2636 5.097529 GTGTTGATAAATGCCACATGAGTG 58.902 41.667 0.00 0.00 45.47 3.51
2504 2637 4.142622 CGTGTTGATAAATGCCACATGAGT 60.143 41.667 0.00 0.00 0.00 3.41
2505 2638 4.345288 CGTGTTGATAAATGCCACATGAG 58.655 43.478 0.00 0.00 0.00 2.90
2506 2639 3.427368 GCGTGTTGATAAATGCCACATGA 60.427 43.478 0.00 0.00 0.00 3.07
2507 2640 2.853594 GCGTGTTGATAAATGCCACATG 59.146 45.455 0.00 0.00 0.00 3.21
2508 2641 2.159254 GGCGTGTTGATAAATGCCACAT 60.159 45.455 1.06 0.00 46.01 3.21
2509 2642 1.201181 GGCGTGTTGATAAATGCCACA 59.799 47.619 1.06 0.00 46.01 4.17
2510 2643 1.908065 GGCGTGTTGATAAATGCCAC 58.092 50.000 1.06 0.00 46.01 5.01
2512 2645 0.814457 TGGGCGTGTTGATAAATGCC 59.186 50.000 0.00 0.00 46.01 4.40
2513 2646 1.201181 TGTGGGCGTGTTGATAAATGC 59.799 47.619 0.00 0.00 0.00 3.56
2514 2647 2.487762 ACTGTGGGCGTGTTGATAAATG 59.512 45.455 0.00 0.00 0.00 2.32
2515 2648 2.747446 GACTGTGGGCGTGTTGATAAAT 59.253 45.455 0.00 0.00 0.00 1.40
2516 2649 2.147958 GACTGTGGGCGTGTTGATAAA 58.852 47.619 0.00 0.00 0.00 1.40
2517 2650 1.070914 TGACTGTGGGCGTGTTGATAA 59.929 47.619 0.00 0.00 0.00 1.75
2518 2651 0.682292 TGACTGTGGGCGTGTTGATA 59.318 50.000 0.00 0.00 0.00 2.15
2519 2652 0.884704 GTGACTGTGGGCGTGTTGAT 60.885 55.000 0.00 0.00 0.00 2.57
2520 2653 1.522806 GTGACTGTGGGCGTGTTGA 60.523 57.895 0.00 0.00 0.00 3.18
2521 2654 1.095228 AAGTGACTGTGGGCGTGTTG 61.095 55.000 0.00 0.00 0.00 3.33
2522 2655 1.095228 CAAGTGACTGTGGGCGTGTT 61.095 55.000 0.00 0.00 0.00 3.32
2523 2656 1.523711 CAAGTGACTGTGGGCGTGT 60.524 57.895 0.00 0.00 0.00 4.49
2524 2657 0.603707 ATCAAGTGACTGTGGGCGTG 60.604 55.000 0.00 0.00 0.00 5.34
2525 2658 0.603707 CATCAAGTGACTGTGGGCGT 60.604 55.000 0.00 0.00 0.00 5.68
2526 2659 0.603707 ACATCAAGTGACTGTGGGCG 60.604 55.000 0.00 0.00 0.00 6.13
2527 2660 1.160137 GACATCAAGTGACTGTGGGC 58.840 55.000 0.00 0.00 0.00 5.36
2528 2661 1.270305 ACGACATCAAGTGACTGTGGG 60.270 52.381 0.00 0.00 0.00 4.61
2529 2662 2.154854 ACGACATCAAGTGACTGTGG 57.845 50.000 0.00 3.94 0.00 4.17
2530 2663 2.153817 CGAACGACATCAAGTGACTGTG 59.846 50.000 0.00 0.00 0.00 3.66
2531 2664 2.034179 TCGAACGACATCAAGTGACTGT 59.966 45.455 0.00 0.00 0.00 3.55
2532 2665 2.661594 TCGAACGACATCAAGTGACTG 58.338 47.619 0.00 0.00 0.00 3.51
2533 2666 3.577649 ATCGAACGACATCAAGTGACT 57.422 42.857 0.00 0.00 0.00 3.41
2534 2667 3.673338 TGAATCGAACGACATCAAGTGAC 59.327 43.478 10.53 0.00 0.00 3.67
2535 2668 3.908213 TGAATCGAACGACATCAAGTGA 58.092 40.909 10.53 0.00 0.00 3.41
2536 2669 4.847365 ATGAATCGAACGACATCAAGTG 57.153 40.909 14.86 0.00 30.59 3.16
2537 2670 5.862924 AAATGAATCGAACGACATCAAGT 57.137 34.783 14.86 6.93 30.59 3.16
2538 2671 5.002840 GCAAAATGAATCGAACGACATCAAG 59.997 40.000 14.86 9.02 30.59 3.02
2539 2672 4.851014 GCAAAATGAATCGAACGACATCAA 59.149 37.500 14.86 3.90 30.59 2.57
2540 2673 4.083590 TGCAAAATGAATCGAACGACATCA 60.084 37.500 13.79 13.79 0.00 3.07
2545 2678 2.476997 TCGTGCAAAATGAATCGAACGA 59.523 40.909 0.00 0.00 36.55 3.85
2554 2688 5.648572 TGCATCAATATTCGTGCAAAATGA 58.351 33.333 17.49 0.00 43.83 2.57
2555 2689 5.952698 TGCATCAATATTCGTGCAAAATG 57.047 34.783 17.49 0.00 43.83 2.32
2574 2708 3.018856 CTCTACCAAGATGGCAATTGCA 58.981 45.455 30.32 17.35 42.67 4.08
2578 2712 2.158696 GGCTCTCTACCAAGATGGCAAT 60.159 50.000 0.00 0.00 42.67 3.56
2588 2722 2.168521 GTGCTTACATGGCTCTCTACCA 59.831 50.000 0.00 0.00 42.61 3.25
2592 2726 0.543749 GGGTGCTTACATGGCTCTCT 59.456 55.000 0.00 0.00 0.00 3.10
2601 2735 1.004628 ACATGATGCTGGGTGCTTACA 59.995 47.619 0.00 0.00 43.37 2.41
2618 2752 5.431731 TGAGACTAAATGATAACCCCCACAT 59.568 40.000 0.00 0.00 0.00 3.21
2625 2759 5.867716 ACACGTGTGAGACTAAATGATAACC 59.132 40.000 22.71 0.00 0.00 2.85
2689 2823 0.031994 AGCATTTTTGCCCACACGAC 59.968 50.000 0.00 0.00 34.90 4.34
2690 2824 0.313672 GAGCATTTTTGCCCACACGA 59.686 50.000 0.00 0.00 34.90 4.35
2743 2877 4.395854 CCACATATGCACACATGTAGTTGT 59.604 41.667 1.58 0.00 37.04 3.32
2775 2909 4.495422 ACCATAGTTCTCGTGTGTGATTC 58.505 43.478 0.00 0.00 0.00 2.52
2802 2936 2.953648 TCAGCCATAGTTGCCATGAATG 59.046 45.455 0.00 0.00 0.00 2.67
2803 2937 2.954318 GTCAGCCATAGTTGCCATGAAT 59.046 45.455 0.00 0.00 0.00 2.57
2804 2938 2.368439 GTCAGCCATAGTTGCCATGAA 58.632 47.619 0.00 0.00 0.00 2.57
2805 2939 1.408683 GGTCAGCCATAGTTGCCATGA 60.409 52.381 0.00 0.00 34.09 3.07
2806 2940 1.027357 GGTCAGCCATAGTTGCCATG 58.973 55.000 0.00 0.00 34.09 3.66
2807 2941 0.625316 TGGTCAGCCATAGTTGCCAT 59.375 50.000 0.00 0.00 40.46 4.40
2820 2954 4.611943 CCATAGTTCTCGTGTATGGTCAG 58.388 47.826 0.00 0.00 38.86 3.51
2883 3017 9.293404 GGTCTGTGATACTAGTTACCACATATA 57.707 37.037 18.55 9.55 37.17 0.86
2892 3026 5.678583 AGTAGCGGTCTGTGATACTAGTTA 58.321 41.667 0.00 0.00 0.00 2.24
2909 3045 4.219143 TGTATGATCAACCGTAGTAGCG 57.781 45.455 0.00 0.00 0.00 4.26
2912 3048 4.342665 TGCCATGTATGATCAACCGTAGTA 59.657 41.667 0.00 0.00 0.00 1.82
2917 3053 2.945008 AGTTGCCATGTATGATCAACCG 59.055 45.455 17.81 0.00 39.53 4.44
2975 3116 7.712639 CAGCCATGTATCACTAAATCTAGTTGT 59.287 37.037 0.00 0.00 36.14 3.32
2982 3123 6.895898 CATGTCAGCCATGTATCACTAAATC 58.104 40.000 0.00 0.00 44.96 2.17
3026 3167 9.999660 TGTGTGTAATCAACTTTAGTTACCATA 57.000 29.630 0.00 0.00 36.32 2.74
3031 3183 8.422973 AACGTGTGTGTAATCAACTTTAGTTA 57.577 30.769 0.00 0.00 36.32 2.24
3065 3217 0.253160 AACTGCTCACCCCCATCCTA 60.253 55.000 0.00 0.00 0.00 2.94
3066 3218 1.542375 AACTGCTCACCCCCATCCT 60.542 57.895 0.00 0.00 0.00 3.24
3092 3244 1.592669 CGATGGCTCACACGATCCC 60.593 63.158 0.00 0.00 0.00 3.85
3095 3247 1.476891 AGTTACGATGGCTCACACGAT 59.523 47.619 0.00 0.00 0.00 3.73
3103 3255 2.511600 GGCGCAGTTACGATGGCT 60.512 61.111 10.83 0.00 34.06 4.75
3113 3265 3.582120 CACACGTTTGGGCGCAGT 61.582 61.111 10.83 0.00 34.88 4.40
3154 3306 1.681327 GAGAGCCCACACGACCCTA 60.681 63.158 0.00 0.00 0.00 3.53
3170 3322 3.438087 TCGTTCGGTTGTACCTAGAAGAG 59.562 47.826 0.00 0.00 35.66 2.85
3174 3326 2.744202 GACTCGTTCGGTTGTACCTAGA 59.256 50.000 0.00 0.00 35.66 2.43
3177 3329 0.239347 CGACTCGTTCGGTTGTACCT 59.761 55.000 1.85 0.00 44.60 3.08
3187 3339 1.728426 CCGACCACACGACTCGTTC 60.728 63.158 0.00 0.00 38.32 3.95
3188 3340 2.333938 CCGACCACACGACTCGTT 59.666 61.111 0.00 0.00 38.32 3.85
3193 3345 1.226888 GGATAGCCGACCACACGAC 60.227 63.158 0.00 0.00 35.09 4.34
3206 3358 3.325870 ACACGTGTGACACAATGGATAG 58.674 45.455 22.71 0.00 33.40 2.08
3229 3381 6.248569 AGGATTTTGGACACCGATAACTAT 57.751 37.500 0.00 0.00 0.00 2.12
3230 3382 5.687166 AGGATTTTGGACACCGATAACTA 57.313 39.130 0.00 0.00 0.00 2.24
3240 3392 6.321181 GGCAGTATCATTTAGGATTTTGGACA 59.679 38.462 0.00 0.00 0.00 4.02
3247 3399 6.827727 AGTTACGGCAGTATCATTTAGGATT 58.172 36.000 7.65 0.00 32.12 3.01
3248 3400 6.420913 AGTTACGGCAGTATCATTTAGGAT 57.579 37.500 7.65 0.00 32.12 3.24
3253 3405 9.609346 AGTTTTATAGTTACGGCAGTATCATTT 57.391 29.630 7.65 0.00 32.12 2.32
3254 3406 9.042008 CAGTTTTATAGTTACGGCAGTATCATT 57.958 33.333 7.65 0.00 32.12 2.57
3255 3407 7.170998 GCAGTTTTATAGTTACGGCAGTATCAT 59.829 37.037 7.65 0.79 33.96 2.45
3256 3408 6.477688 GCAGTTTTATAGTTACGGCAGTATCA 59.522 38.462 7.65 0.00 33.96 2.15
3257 3409 6.700520 AGCAGTTTTATAGTTACGGCAGTATC 59.299 38.462 0.00 0.00 35.80 2.24
3258 3410 6.479001 CAGCAGTTTTATAGTTACGGCAGTAT 59.521 38.462 0.00 0.00 35.80 2.12
3260 3412 4.630069 CAGCAGTTTTATAGTTACGGCAGT 59.370 41.667 0.00 0.00 35.80 4.40
3261 3413 4.868171 TCAGCAGTTTTATAGTTACGGCAG 59.132 41.667 0.00 0.00 35.80 4.85
3262 3414 4.823157 TCAGCAGTTTTATAGTTACGGCA 58.177 39.130 0.00 0.00 35.80 5.69
3263 3415 5.789710 TTCAGCAGTTTTATAGTTACGGC 57.210 39.130 0.00 0.00 33.97 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.