Multiple sequence alignment - TraesCS5B01G336200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G336200 chr5B 100.000 3578 0 0 1 3578 519233800 519230223 0.000000e+00 6608.0
1 TraesCS5B01G336200 chr5B 86.484 1243 155 9 1153 2387 488191391 488190154 0.000000e+00 1352.0
2 TraesCS5B01G336200 chr5B 84.906 1272 170 17 1126 2387 488126912 488125653 0.000000e+00 1266.0
3 TraesCS5B01G336200 chr5B 90.186 591 49 6 2995 3578 519195229 519194641 0.000000e+00 761.0
4 TraesCS5B01G336200 chr5B 89.845 581 49 7 3001 3578 179248511 179249084 0.000000e+00 737.0
5 TraesCS5B01G336200 chr5A 92.376 2584 110 25 136 2675 545833549 545831009 0.000000e+00 3600.0
6 TraesCS5B01G336200 chr5A 86.447 1247 151 14 1153 2387 512642673 512641433 0.000000e+00 1351.0
7 TraesCS5B01G336200 chr5A 86.364 132 17 1 7 137 545833720 545833589 3.720000e-30 143.0
8 TraesCS5B01G336200 chr5A 87.619 105 13 0 2588 2692 631972116 631972012 4.850000e-24 122.0
9 TraesCS5B01G336200 chr5A 84.615 65 10 0 64 128 663386981 663386917 8.290000e-07 65.8
10 TraesCS5B01G336200 chr5D 94.723 2274 68 20 440 2692 429980882 429978640 0.000000e+00 3487.0
11 TraesCS5B01G336200 chr5D 86.484 1243 154 9 1155 2387 406959383 406960621 0.000000e+00 1352.0
12 TraesCS5B01G336200 chr5D 90.262 267 26 0 2728 2994 429978651 429978385 2.040000e-92 350.0
13 TraesCS5B01G336200 chr5D 80.083 482 84 11 1871 2343 402726206 402726684 7.350000e-92 348.0
14 TraesCS5B01G336200 chr5D 85.804 317 36 4 136 448 429982185 429981874 9.580000e-86 327.0
15 TraesCS5B01G336200 chr5D 91.176 102 9 0 2591 2692 377261374 377261273 4.820000e-29 139.0
16 TraesCS5B01G336200 chr5D 83.871 62 10 0 2929 2990 291484499 291484560 3.860000e-05 60.2
17 TraesCS5B01G336200 chr7D 82.177 1240 181 26 1170 2384 104740566 104741790 0.000000e+00 1029.0
18 TraesCS5B01G336200 chr7D 81.230 1252 184 32 1160 2384 104733694 104734921 0.000000e+00 963.0
19 TraesCS5B01G336200 chr7D 90.203 592 39 16 2995 3576 490867516 490868098 0.000000e+00 754.0
20 TraesCS5B01G336200 chr7D 90.067 594 38 18 2991 3576 419754094 419753514 0.000000e+00 750.0
21 TraesCS5B01G336200 chr7D 77.519 129 21 7 273 395 133829297 133829423 1.780000e-08 71.3
22 TraesCS5B01G336200 chr7A 82.114 1230 191 20 1170 2384 109236829 109238044 0.000000e+00 1026.0
23 TraesCS5B01G336200 chr7A 85.149 202 30 0 2726 2927 162108429 162108228 1.300000e-49 207.0
24 TraesCS5B01G336200 chr7A 81.659 229 41 1 2159 2387 104540386 104540613 4.720000e-44 189.0
25 TraesCS5B01G336200 chr7A 83.756 197 32 0 2726 2922 83107537 83107733 1.700000e-43 187.0
26 TraesCS5B01G336200 chr7A 90.196 102 10 0 2591 2692 162108517 162108416 2.240000e-27 134.0
27 TraesCS5B01G336200 chr7A 89.216 102 11 0 2591 2692 142950395 142950496 1.040000e-25 128.0
28 TraesCS5B01G336200 chr7A 77.917 240 27 16 1188 1422 232061789 232062007 3.750000e-25 126.0
29 TraesCS5B01G336200 chr7A 84.375 64 8 2 341 404 92462418 92462357 1.070000e-05 62.1
30 TraesCS5B01G336200 chr7B 80.968 1240 198 25 1173 2387 63542852 63541626 0.000000e+00 948.0
31 TraesCS5B01G336200 chr7B 87.500 64 8 0 2931 2994 454234649 454234712 1.380000e-09 75.0
32 TraesCS5B01G336200 chr1B 90.460 587 46 9 2995 3578 433040946 433040367 0.000000e+00 765.0
33 TraesCS5B01G336200 chr1B 89.865 592 47 9 2995 3578 190290509 190291095 0.000000e+00 749.0
34 TraesCS5B01G336200 chr1B 89.882 593 45 9 2993 3576 573796274 573796860 0.000000e+00 749.0
35 TraesCS5B01G336200 chr3B 89.713 593 45 12 2995 3578 169189990 169190575 0.000000e+00 743.0
36 TraesCS5B01G336200 chr3B 81.967 122 19 2 273 391 78655120 78655241 2.270000e-17 100.0
37 TraesCS5B01G336200 chr4D 89.580 595 43 13 2993 3575 493875887 493875300 0.000000e+00 737.0
38 TraesCS5B01G336200 chr4D 83.575 207 34 0 2728 2934 316525027 316524821 1.010000e-45 195.0
39 TraesCS5B01G336200 chr4D 83.077 130 18 4 7 134 18211821 18211694 8.120000e-22 115.0
40 TraesCS5B01G336200 chr6A 84.762 210 29 2 2725 2934 597317647 597317441 1.300000e-49 207.0
41 TraesCS5B01G336200 chr3D 83.902 205 33 0 2730 2934 15890829 15891033 2.820000e-46 196.0
42 TraesCS5B01G336200 chr3D 91.139 79 5 2 7 84 339841743 339841820 4.890000e-19 106.0
43 TraesCS5B01G336200 chr3A 84.158 202 31 1 2733 2934 382273134 382272934 1.010000e-45 195.0
44 TraesCS5B01G336200 chr3A 83.333 126 16 5 10 134 465006976 465006855 1.050000e-20 111.0
45 TraesCS5B01G336200 chr2D 84.343 198 31 0 2726 2923 344312941 344313138 1.010000e-45 195.0
46 TraesCS5B01G336200 chr2D 81.752 137 21 3 1 136 14248109 14248242 1.050000e-20 111.0
47 TraesCS5B01G336200 chr2D 92.105 76 6 0 7 82 303629852 303629927 1.360000e-19 108.0
48 TraesCS5B01G336200 chr2D 80.198 101 19 1 273 372 474989386 474989486 1.380000e-09 75.0
49 TraesCS5B01G336200 chr2D 77.344 128 26 3 248 372 474995032 474995159 4.960000e-09 73.1
50 TraesCS5B01G336200 chr2B 84.000 200 30 2 2728 2926 24986654 24986852 1.310000e-44 191.0
51 TraesCS5B01G336200 chr2B 90.476 105 10 0 2588 2692 495165568 495165672 4.820000e-29 139.0
52 TraesCS5B01G336200 chr2B 89.899 99 10 0 2591 2689 24986564 24986662 1.040000e-25 128.0
53 TraesCS5B01G336200 chr2B 85.156 128 16 3 1 127 605218147 605218272 1.040000e-25 128.0
54 TraesCS5B01G336200 chr2B 89.062 64 7 0 2931 2994 232265824 232265761 2.960000e-11 80.5
55 TraesCS5B01G336200 chr1D 93.137 102 7 0 2591 2692 445096415 445096516 2.230000e-32 150.0
56 TraesCS5B01G336200 chr1D 76.623 154 30 6 250 399 361149960 361149809 2.960000e-11 80.5
57 TraesCS5B01G336200 chr2A 91.667 96 8 0 2597 2692 13010432 13010337 2.240000e-27 134.0
58 TraesCS5B01G336200 chr2A 89.024 82 8 1 1 82 60776477 60776557 2.270000e-17 100.0
59 TraesCS5B01G336200 chr6D 83.471 121 14 6 7 125 386418810 386418694 1.360000e-19 108.0
60 TraesCS5B01G336200 chr6B 78.992 119 18 7 316 427 689925627 689925745 1.380000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G336200 chr5B 519230223 519233800 3577 True 6608.0 6608 100.000 1 3578 1 chr5B.!!$R4 3577
1 TraesCS5B01G336200 chr5B 488190154 488191391 1237 True 1352.0 1352 86.484 1153 2387 1 chr5B.!!$R2 1234
2 TraesCS5B01G336200 chr5B 488125653 488126912 1259 True 1266.0 1266 84.906 1126 2387 1 chr5B.!!$R1 1261
3 TraesCS5B01G336200 chr5B 519194641 519195229 588 True 761.0 761 90.186 2995 3578 1 chr5B.!!$R3 583
4 TraesCS5B01G336200 chr5B 179248511 179249084 573 False 737.0 737 89.845 3001 3578 1 chr5B.!!$F1 577
5 TraesCS5B01G336200 chr5A 545831009 545833720 2711 True 1871.5 3600 89.370 7 2675 2 chr5A.!!$R4 2668
6 TraesCS5B01G336200 chr5A 512641433 512642673 1240 True 1351.0 1351 86.447 1153 2387 1 chr5A.!!$R1 1234
7 TraesCS5B01G336200 chr5D 429978385 429982185 3800 True 1388.0 3487 90.263 136 2994 3 chr5D.!!$R2 2858
8 TraesCS5B01G336200 chr5D 406959383 406960621 1238 False 1352.0 1352 86.484 1155 2387 1 chr5D.!!$F3 1232
9 TraesCS5B01G336200 chr7D 104740566 104741790 1224 False 1029.0 1029 82.177 1170 2384 1 chr7D.!!$F2 1214
10 TraesCS5B01G336200 chr7D 104733694 104734921 1227 False 963.0 963 81.230 1160 2384 1 chr7D.!!$F1 1224
11 TraesCS5B01G336200 chr7D 490867516 490868098 582 False 754.0 754 90.203 2995 3576 1 chr7D.!!$F4 581
12 TraesCS5B01G336200 chr7D 419753514 419754094 580 True 750.0 750 90.067 2991 3576 1 chr7D.!!$R1 585
13 TraesCS5B01G336200 chr7A 109236829 109238044 1215 False 1026.0 1026 82.114 1170 2384 1 chr7A.!!$F3 1214
14 TraesCS5B01G336200 chr7B 63541626 63542852 1226 True 948.0 948 80.968 1173 2387 1 chr7B.!!$R1 1214
15 TraesCS5B01G336200 chr1B 433040367 433040946 579 True 765.0 765 90.460 2995 3578 1 chr1B.!!$R1 583
16 TraesCS5B01G336200 chr1B 190290509 190291095 586 False 749.0 749 89.865 2995 3578 1 chr1B.!!$F1 583
17 TraesCS5B01G336200 chr1B 573796274 573796860 586 False 749.0 749 89.882 2993 3576 1 chr1B.!!$F2 583
18 TraesCS5B01G336200 chr3B 169189990 169190575 585 False 743.0 743 89.713 2995 3578 1 chr3B.!!$F2 583
19 TraesCS5B01G336200 chr4D 493875300 493875887 587 True 737.0 737 89.580 2993 3575 1 chr4D.!!$R3 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.251341 GCCAGGGTGGTCAGAAACAT 60.251 55.0 0.0 0.0 40.46 2.71 F
1593 2689 0.249398 GCGTCAACCTCACCACCTAT 59.751 55.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 3151 3.833645 CGCTTCCCGATGACCCGA 61.834 66.667 0.0 0.0 40.02 5.14 R
2788 3928 0.106015 AACAAGGTTTGGCTGGCTCT 60.106 50.000 2.0 0.0 34.12 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.521669 AGAAAGAAGGAAGGAGAGAAAAATGA 58.478 34.615 0.00 0.00 0.00 2.57
48 49 1.904440 AAATGAGGAGGATGGAGGCT 58.096 50.000 0.00 0.00 0.00 4.58
71 72 0.608308 GGTCCGAGAAGGGTTTTGGG 60.608 60.000 0.00 0.00 41.52 4.12
77 78 2.122592 AAGGGTTTTGGGTGGGCC 60.123 61.111 0.00 0.00 0.00 5.80
78 79 2.956077 GAAGGGTTTTGGGTGGGCCA 62.956 60.000 0.00 0.00 36.17 5.36
79 80 2.922503 GGGTTTTGGGTGGGCCAG 60.923 66.667 6.40 0.00 36.17 4.85
82 83 3.443479 TTTTGGGTGGGCCAGGGT 61.443 61.111 6.40 0.00 36.17 4.34
91 92 2.840753 GGGCCAGGGTGGTCAGAAA 61.841 63.158 4.39 0.00 45.98 2.52
93 94 1.150536 GCCAGGGTGGTCAGAAACA 59.849 57.895 0.00 0.00 40.46 2.83
94 95 0.251341 GCCAGGGTGGTCAGAAACAT 60.251 55.000 0.00 0.00 40.46 2.71
95 96 1.538047 CCAGGGTGGTCAGAAACATG 58.462 55.000 0.00 0.00 31.35 3.21
96 97 1.202927 CCAGGGTGGTCAGAAACATGT 60.203 52.381 0.00 0.00 31.35 3.21
107 108 2.553602 CAGAAACATGTGTGGCTGCTAA 59.446 45.455 0.00 0.00 0.00 3.09
120 121 1.103803 CTGCTAACTAGACTCCCGCA 58.896 55.000 0.00 0.00 0.00 5.69
129 130 2.034221 ACTCCCGCAAAGCCCTTC 59.966 61.111 0.00 0.00 0.00 3.46
131 132 4.360405 TCCCGCAAAGCCCTTCCC 62.360 66.667 0.00 0.00 0.00 3.97
134 135 4.366684 CGCAAAGCCCTTCCCCCT 62.367 66.667 0.00 0.00 0.00 4.79
136 137 1.984570 GCAAAGCCCTTCCCCCTTC 60.985 63.158 0.00 0.00 0.00 3.46
137 138 1.776969 CAAAGCCCTTCCCCCTTCT 59.223 57.895 0.00 0.00 0.00 2.85
138 139 0.613012 CAAAGCCCTTCCCCCTTCTG 60.613 60.000 0.00 0.00 0.00 3.02
139 140 1.804530 AAAGCCCTTCCCCCTTCTGG 61.805 60.000 0.00 0.00 0.00 3.86
140 141 2.614013 GCCCTTCCCCCTTCTGGA 60.614 66.667 0.00 0.00 35.39 3.86
142 143 1.229984 CCCTTCCCCCTTCTGGACT 60.230 63.158 0.00 0.00 35.39 3.85
143 144 0.846870 CCCTTCCCCCTTCTGGACTT 60.847 60.000 0.00 0.00 35.39 3.01
144 145 1.557188 CCCTTCCCCCTTCTGGACTTA 60.557 57.143 0.00 0.00 35.39 2.24
146 147 2.439880 CCTTCCCCCTTCTGGACTTATC 59.560 54.545 0.00 0.00 35.39 1.75
164 207 2.588034 GGCGAACCGATACAGGCC 60.588 66.667 0.00 0.00 33.69 5.19
166 209 2.897207 CGAACCGATACAGGCCCA 59.103 61.111 0.00 0.00 33.69 5.36
168 211 1.905512 GAACCGATACAGGCCCACT 59.094 57.895 0.00 0.00 33.69 4.00
189 232 2.178273 GATGGCAAACCGCGTTCC 59.822 61.111 4.92 0.00 43.84 3.62
190 233 3.336715 GATGGCAAACCGCGTTCCC 62.337 63.158 4.92 0.00 43.84 3.97
211 254 4.675404 GGTCAGTCCGGACAGTTG 57.325 61.111 35.00 24.33 39.59 3.16
228 271 2.674033 GCGGGCGGTTTAAGGGTT 60.674 61.111 0.00 0.00 0.00 4.11
239 282 0.393820 TTAAGGGTTCGCGTTGGAGT 59.606 50.000 5.77 0.00 0.00 3.85
241 284 0.464916 AAGGGTTCGCGTTGGAGTTT 60.465 50.000 5.77 0.00 0.00 2.66
260 303 4.791880 AGTTTCCCTTAGGGCCTTAACATA 59.208 41.667 13.45 0.00 43.94 2.29
264 307 4.729881 TCCCTTAGGGCCTTAACATAATGT 59.270 41.667 13.45 0.00 43.94 2.71
265 308 5.194942 TCCCTTAGGGCCTTAACATAATGTT 59.805 40.000 13.45 0.00 43.94 2.71
304 348 1.064003 TAAGGTTTGCCCTGCTCTGA 58.936 50.000 0.00 0.00 45.47 3.27
320 364 6.236558 TGCTCTGATGAAGAAGAAGATGAT 57.763 37.500 0.00 0.00 33.37 2.45
333 377 0.807667 AGATGATTGCGGCGTGTCTC 60.808 55.000 9.37 1.27 0.00 3.36
374 418 3.596940 AGTCATCGGTAGGTGGTCTAT 57.403 47.619 0.00 0.00 0.00 1.98
381 425 4.139786 TCGGTAGGTGGTCTATGTACATC 58.860 47.826 12.68 0.00 0.00 3.06
391 435 9.772973 GGTGGTCTATGTACATCAATGTATTTA 57.227 33.333 12.68 1.88 44.25 1.40
427 474 8.741101 TTACTGCAATTGTGTTTGATGAATAC 57.259 30.769 7.40 0.00 0.00 1.89
428 475 6.747125 ACTGCAATTGTGTTTGATGAATACA 58.253 32.000 7.40 0.00 37.55 2.29
429 476 6.864685 ACTGCAATTGTGTTTGATGAATACAG 59.135 34.615 7.40 3.20 39.95 2.74
430 477 6.747125 TGCAATTGTGTTTGATGAATACAGT 58.253 32.000 7.40 0.00 39.95 3.55
431 478 7.880105 TGCAATTGTGTTTGATGAATACAGTA 58.120 30.769 7.40 0.00 39.95 2.74
432 479 7.807433 TGCAATTGTGTTTGATGAATACAGTAC 59.193 33.333 7.40 0.00 39.95 2.73
508 1554 0.914417 TAAGAGGTCCAGGGCCCAAG 60.914 60.000 27.56 16.52 0.00 3.61
517 1563 3.961414 GGGCCCAAGACGTCCCAA 61.961 66.667 19.95 0.00 38.62 4.12
584 1644 2.173382 GTGCCGCGAACATGTCAC 59.827 61.111 8.23 0.00 0.00 3.67
621 1681 3.552604 TTGCAGCCGAATAAAGAACAC 57.447 42.857 0.00 0.00 0.00 3.32
623 1683 1.132453 GCAGCCGAATAAAGAACACCC 59.868 52.381 0.00 0.00 0.00 4.61
855 1915 2.718073 CGCCAGCCTACCTACCGTT 61.718 63.158 0.00 0.00 0.00 4.44
856 1916 1.153429 GCCAGCCTACCTACCGTTG 60.153 63.158 0.00 0.00 0.00 4.10
857 1917 1.153429 CCAGCCTACCTACCGTTGC 60.153 63.158 0.00 0.00 0.00 4.17
858 1918 1.594833 CAGCCTACCTACCGTTGCA 59.405 57.895 0.00 0.00 0.00 4.08
859 1919 0.739813 CAGCCTACCTACCGTTGCAC 60.740 60.000 0.00 0.00 0.00 4.57
860 1920 1.189524 AGCCTACCTACCGTTGCACA 61.190 55.000 0.00 0.00 0.00 4.57
861 1921 1.017701 GCCTACCTACCGTTGCACAC 61.018 60.000 0.00 0.00 0.00 3.82
862 1922 0.390735 CCTACCTACCGTTGCACACC 60.391 60.000 0.00 0.00 0.00 4.16
863 1923 0.606604 CTACCTACCGTTGCACACCT 59.393 55.000 0.00 0.00 0.00 4.00
864 1924 0.319083 TACCTACCGTTGCACACCTG 59.681 55.000 0.00 0.00 0.00 4.00
865 1925 2.325082 CCTACCGTTGCACACCTGC 61.325 63.158 0.00 0.00 44.52 4.85
866 1926 2.281208 TACCGTTGCACACCTGCC 60.281 61.111 0.00 0.00 43.51 4.85
870 1930 4.332637 GTTGCACACCTGCCGCAG 62.333 66.667 13.82 13.82 43.51 5.18
1485 2578 3.222855 CGCAGGGAGATCGAGGCT 61.223 66.667 0.00 0.00 0.00 4.58
1494 2587 3.423162 GATCGAGGCTGTGCTCGCT 62.423 63.158 0.00 0.00 42.17 4.93
1593 2689 0.249398 GCGTCAACCTCACCACCTAT 59.751 55.000 0.00 0.00 0.00 2.57
1620 2716 0.545548 AGGAGGAGGTGGTCAAGGTC 60.546 60.000 0.00 0.00 0.00 3.85
2367 3484 0.898320 CCACCTCGGACATCAAGACT 59.102 55.000 0.00 0.00 36.56 3.24
2391 3514 1.222113 GGCCTACTCCAGCTGAACC 59.778 63.158 17.39 1.56 0.00 3.62
2402 3525 2.092753 CCAGCTGAACCTATGATGTGGT 60.093 50.000 17.39 0.00 38.35 4.16
2562 3695 5.452078 TGTGGCTATTCTTTTGTTTCCTG 57.548 39.130 0.00 0.00 0.00 3.86
2632 3772 8.620116 TCATCTTCAATCATGACAGTACAAAA 57.380 30.769 0.00 0.00 34.61 2.44
2675 3815 1.202879 ACAACCATGTTCGTGGACCAT 60.203 47.619 16.70 0.00 42.02 3.55
2676 3816 1.468520 CAACCATGTTCGTGGACCATC 59.531 52.381 16.70 0.00 42.02 3.51
2679 3819 2.569853 ACCATGTTCGTGGACCATCTAA 59.430 45.455 16.70 0.00 42.02 2.10
2680 3820 2.936498 CCATGTTCGTGGACCATCTAAC 59.064 50.000 0.00 3.61 42.02 2.34
2681 3821 3.595173 CATGTTCGTGGACCATCTAACA 58.405 45.455 16.78 16.78 0.00 2.41
2682 3822 3.755112 TGTTCGTGGACCATCTAACAA 57.245 42.857 13.72 2.61 0.00 2.83
2683 3823 3.395639 TGTTCGTGGACCATCTAACAAC 58.604 45.455 13.72 5.47 0.00 3.32
2684 3824 2.357327 TCGTGGACCATCTAACAACG 57.643 50.000 0.00 0.00 0.00 4.10
2685 3825 1.887854 TCGTGGACCATCTAACAACGA 59.112 47.619 0.00 0.00 0.00 3.85
2686 3826 1.990563 CGTGGACCATCTAACAACGAC 59.009 52.381 0.00 0.00 0.00 4.34
2687 3827 2.352421 CGTGGACCATCTAACAACGACT 60.352 50.000 0.00 0.00 0.00 4.18
2688 3828 3.119743 CGTGGACCATCTAACAACGACTA 60.120 47.826 0.00 0.00 0.00 2.59
2689 3829 4.171754 GTGGACCATCTAACAACGACTAC 58.828 47.826 0.00 0.00 0.00 2.73
2690 3830 3.827876 TGGACCATCTAACAACGACTACA 59.172 43.478 0.00 0.00 0.00 2.74
2691 3831 4.281435 TGGACCATCTAACAACGACTACAA 59.719 41.667 0.00 0.00 0.00 2.41
2692 3832 4.624452 GGACCATCTAACAACGACTACAAC 59.376 45.833 0.00 0.00 0.00 3.32
2693 3833 4.232221 ACCATCTAACAACGACTACAACG 58.768 43.478 0.00 0.00 0.00 4.10
2694 3834 4.022935 ACCATCTAACAACGACTACAACGA 60.023 41.667 0.00 0.00 34.70 3.85
2695 3835 4.322804 CCATCTAACAACGACTACAACGAC 59.677 45.833 0.00 0.00 34.70 4.34
2696 3836 4.818534 TCTAACAACGACTACAACGACT 57.181 40.909 0.00 0.00 34.70 4.18
2697 3837 5.922739 TCTAACAACGACTACAACGACTA 57.077 39.130 0.00 0.00 34.70 2.59
2698 3838 5.679906 TCTAACAACGACTACAACGACTAC 58.320 41.667 0.00 0.00 34.70 2.73
2699 3839 4.558538 AACAACGACTACAACGACTACT 57.441 40.909 0.00 0.00 34.70 2.57
2700 3840 5.673337 AACAACGACTACAACGACTACTA 57.327 39.130 0.00 0.00 34.70 1.82
2701 3841 5.023551 ACAACGACTACAACGACTACTAC 57.976 43.478 0.00 0.00 34.70 2.73
2702 3842 4.511454 ACAACGACTACAACGACTACTACA 59.489 41.667 0.00 0.00 34.70 2.74
2703 3843 5.007626 ACAACGACTACAACGACTACTACAA 59.992 40.000 0.00 0.00 34.70 2.41
2704 3844 5.673337 ACGACTACAACGACTACTACAAA 57.327 39.130 0.00 0.00 34.70 2.83
2705 3845 5.683859 ACGACTACAACGACTACTACAAAG 58.316 41.667 0.00 0.00 34.70 2.77
2706 3846 5.466728 ACGACTACAACGACTACTACAAAGA 59.533 40.000 0.00 0.00 34.70 2.52
2707 3847 5.787551 CGACTACAACGACTACTACAAAGAC 59.212 44.000 0.00 0.00 0.00 3.01
2708 3848 6.347240 CGACTACAACGACTACTACAAAGACT 60.347 42.308 0.00 0.00 0.00 3.24
2709 3849 7.148738 CGACTACAACGACTACTACAAAGACTA 60.149 40.741 0.00 0.00 0.00 2.59
2710 3850 7.801752 ACTACAACGACTACTACAAAGACTAC 58.198 38.462 0.00 0.00 0.00 2.73
2711 3851 6.624352 ACAACGACTACTACAAAGACTACA 57.376 37.500 0.00 0.00 0.00 2.74
2712 3852 7.031226 ACAACGACTACTACAAAGACTACAA 57.969 36.000 0.00 0.00 0.00 2.41
2713 3853 7.137426 ACAACGACTACTACAAAGACTACAAG 58.863 38.462 0.00 0.00 0.00 3.16
2714 3854 5.697826 ACGACTACTACAAAGACTACAAGC 58.302 41.667 0.00 0.00 0.00 4.01
2715 3855 5.240183 ACGACTACTACAAAGACTACAAGCA 59.760 40.000 0.00 0.00 0.00 3.91
2716 3856 5.568296 CGACTACTACAAAGACTACAAGCAC 59.432 44.000 0.00 0.00 0.00 4.40
2717 3857 6.568081 CGACTACTACAAAGACTACAAGCACT 60.568 42.308 0.00 0.00 0.00 4.40
2718 3858 6.679843 ACTACTACAAAGACTACAAGCACTC 58.320 40.000 0.00 0.00 0.00 3.51
2719 3859 5.793030 ACTACAAAGACTACAAGCACTCT 57.207 39.130 0.00 0.00 0.00 3.24
2720 3860 5.774630 ACTACAAAGACTACAAGCACTCTC 58.225 41.667 0.00 0.00 0.00 3.20
2721 3861 4.672587 ACAAAGACTACAAGCACTCTCA 57.327 40.909 0.00 0.00 0.00 3.27
2722 3862 4.626042 ACAAAGACTACAAGCACTCTCAG 58.374 43.478 0.00 0.00 0.00 3.35
2723 3863 4.342378 ACAAAGACTACAAGCACTCTCAGA 59.658 41.667 0.00 0.00 0.00 3.27
2724 3864 5.163405 ACAAAGACTACAAGCACTCTCAGAA 60.163 40.000 0.00 0.00 0.00 3.02
2725 3865 5.537300 AAGACTACAAGCACTCTCAGAAA 57.463 39.130 0.00 0.00 0.00 2.52
2726 3866 5.537300 AGACTACAAGCACTCTCAGAAAA 57.463 39.130 0.00 0.00 0.00 2.29
2753 3893 1.468506 TACAAGCACTGGACCGAGCA 61.469 55.000 5.56 0.00 0.00 4.26
2788 3928 1.296392 CATCGCCACTCCTTCACCA 59.704 57.895 0.00 0.00 0.00 4.17
2794 3934 1.483595 CCACTCCTTCACCAGAGCCA 61.484 60.000 0.00 0.00 33.18 4.75
2796 3936 1.078567 CTCCTTCACCAGAGCCAGC 60.079 63.158 0.00 0.00 0.00 4.85
2800 3940 0.538057 CTTCACCAGAGCCAGCCAAA 60.538 55.000 0.00 0.00 0.00 3.28
2811 3951 1.618343 GCCAGCCAAACCTTGTTGTAT 59.382 47.619 0.00 0.00 0.00 2.29
2829 3969 4.338012 TGTATTAGACAGTCGGGAAGTCA 58.662 43.478 0.00 0.00 34.80 3.41
2835 3975 1.305046 AGTCGGGAAGTCATCGGGT 60.305 57.895 0.00 0.00 0.00 5.28
2849 3989 0.326808 TCGGGTTAAGGCCCCATAGT 60.327 55.000 0.00 0.00 45.91 2.12
2857 3997 0.619543 AGGCCCCATAGTACCAACGT 60.620 55.000 0.00 0.00 0.00 3.99
2864 4004 3.181483 CCCATAGTACCAACGTACCAGAC 60.181 52.174 0.00 0.00 45.16 3.51
2893 4033 1.614385 TCGTCGATGAAGAAAGTCGC 58.386 50.000 4.45 0.00 35.48 5.19
2938 4078 1.140052 ACACCCGAATGAAGACACACA 59.860 47.619 0.00 0.00 0.00 3.72
2945 4085 3.120546 CGAATGAAGACACACATCCACAC 60.121 47.826 0.00 0.00 0.00 3.82
2946 4086 2.998316 TGAAGACACACATCCACACA 57.002 45.000 0.00 0.00 0.00 3.72
2953 4093 0.687354 ACACATCCACACACCCTCTC 59.313 55.000 0.00 0.00 0.00 3.20
2959 4099 0.321671 CCACACACCCTCTCACGATT 59.678 55.000 0.00 0.00 0.00 3.34
2974 4114 2.670905 CACGATTTTAGACGCACCATCA 59.329 45.455 0.00 0.00 0.00 3.07
2978 4118 2.380084 TTTAGACGCACCATCAGGAC 57.620 50.000 0.00 0.00 38.69 3.85
2990 4130 1.000163 CATCAGGACGGGGATAGAACG 60.000 57.143 0.00 0.00 0.00 3.95
3076 4219 1.757118 CATAGCAACGAGAGGGGAGAA 59.243 52.381 0.00 0.00 0.00 2.87
3125 4269 1.794116 GCGGAAGTGTTTAGTAACGCA 59.206 47.619 0.00 0.00 45.15 5.24
3165 4309 1.119684 TCGTGATCCAACCGATCCAT 58.880 50.000 0.00 0.00 46.06 3.41
3436 4581 4.978388 GCCCCCATATATAAAGGAGGAGAT 59.022 45.833 8.73 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.252284 TCCTTCTTTCTCTCCCGCCT 60.252 55.000 0.00 0.00 0.00 5.52
3 4 2.167487 CTCCTTCCTTCTTTCTCTCCCG 59.833 54.545 0.00 0.00 0.00 5.14
5 6 4.349365 TCTCTCCTTCCTTCTTTCTCTCC 58.651 47.826 0.00 0.00 0.00 3.71
34 35 2.123077 CCGAGCCTCCATCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
57 58 1.185618 GCCCACCCAAAACCCTTCTC 61.186 60.000 0.00 0.00 0.00 2.87
64 65 2.922503 CCCTGGCCCACCCAAAAC 60.923 66.667 0.00 0.00 44.81 2.43
71 72 4.351054 CTGACCACCCTGGCCCAC 62.351 72.222 0.00 0.00 42.67 4.61
77 78 1.881973 CACATGTTTCTGACCACCCTG 59.118 52.381 0.00 0.00 0.00 4.45
78 79 1.494721 ACACATGTTTCTGACCACCCT 59.505 47.619 0.00 0.00 0.00 4.34
79 80 1.608590 CACACATGTTTCTGACCACCC 59.391 52.381 0.00 0.00 0.00 4.61
82 83 1.133823 AGCCACACATGTTTCTGACCA 60.134 47.619 0.00 0.00 0.00 4.02
91 92 2.567169 TCTAGTTAGCAGCCACACATGT 59.433 45.455 0.00 0.00 0.00 3.21
93 94 2.834549 AGTCTAGTTAGCAGCCACACAT 59.165 45.455 0.00 0.00 0.00 3.21
94 95 2.231478 GAGTCTAGTTAGCAGCCACACA 59.769 50.000 0.00 0.00 0.00 3.72
95 96 2.417515 GGAGTCTAGTTAGCAGCCACAC 60.418 54.545 0.00 0.00 0.00 3.82
96 97 1.825474 GGAGTCTAGTTAGCAGCCACA 59.175 52.381 0.00 0.00 0.00 4.17
107 108 1.597461 GGCTTTGCGGGAGTCTAGT 59.403 57.895 0.00 0.00 0.00 2.57
120 121 1.776969 CAGAAGGGGGAAGGGCTTT 59.223 57.895 0.00 0.00 0.00 3.51
129 130 0.759346 CCGATAAGTCCAGAAGGGGG 59.241 60.000 0.00 0.00 37.22 5.40
131 132 0.249489 CGCCGATAAGTCCAGAAGGG 60.249 60.000 0.00 0.00 34.83 3.95
134 135 1.134907 GGTTCGCCGATAAGTCCAGAA 60.135 52.381 0.00 0.00 0.00 3.02
136 137 2.973420 GGTTCGCCGATAAGTCCAG 58.027 57.895 0.00 0.00 0.00 3.86
164 207 0.038343 CGGTTTGCCATCCAAAGTGG 60.038 55.000 0.00 0.00 43.67 4.00
166 209 1.665442 GCGGTTTGCCATCCAAAGT 59.335 52.632 0.00 0.00 43.67 2.66
168 211 1.739338 AACGCGGTTTGCCATCCAAA 61.739 50.000 12.47 0.00 42.08 3.28
195 238 2.022129 CGCAACTGTCCGGACTGAC 61.022 63.158 38.57 26.89 34.80 3.51
196 239 2.338620 CGCAACTGTCCGGACTGA 59.661 61.111 38.57 19.83 34.80 3.41
211 254 2.674033 AACCCTTAAACCGCCCGC 60.674 61.111 0.00 0.00 0.00 6.13
228 271 0.680618 TAAGGGAAACTCCAACGCGA 59.319 50.000 15.93 0.00 38.64 5.87
239 282 7.753561 AACATTATGTTAAGGCCCTAAGGGAAA 60.754 37.037 9.02 0.00 41.57 3.13
241 284 5.194942 AACATTATGTTAAGGCCCTAAGGGA 59.805 40.000 9.02 0.00 41.57 4.20
265 308 9.841295 AACCTTATTGTAGTAGACAGACAAAAA 57.159 29.630 4.79 0.00 39.88 1.94
288 332 0.322816 TCATCAGAGCAGGGCAAACC 60.323 55.000 0.00 0.00 40.67 3.27
304 348 3.314635 GCCGCAATCATCTTCTTCTTCAT 59.685 43.478 0.00 0.00 0.00 2.57
333 377 2.256591 AAGCACTGCAGCAAGTCGG 61.257 57.895 15.27 0.00 36.85 4.79
427 474 4.452455 ACGAGAAAAGCTTCCAATGTACTG 59.548 41.667 0.00 0.00 31.28 2.74
428 475 4.642429 ACGAGAAAAGCTTCCAATGTACT 58.358 39.130 0.00 0.00 31.28 2.73
429 476 5.358298 AACGAGAAAAGCTTCCAATGTAC 57.642 39.130 0.00 0.00 31.28 2.90
430 477 6.385649 AAAACGAGAAAAGCTTCCAATGTA 57.614 33.333 0.00 0.00 31.28 2.29
431 478 4.918810 AAACGAGAAAAGCTTCCAATGT 57.081 36.364 0.00 0.00 31.28 2.71
457 1503 4.098501 GGCCTGGTTTCCATCATTTCTAAG 59.901 45.833 0.00 0.00 30.82 2.18
461 1507 2.178580 TGGCCTGGTTTCCATCATTTC 58.821 47.619 3.32 0.00 30.82 2.17
462 1508 2.323999 TGGCCTGGTTTCCATCATTT 57.676 45.000 3.32 0.00 30.82 2.32
508 1554 3.056328 GCTTGGGCTTGGGACGTC 61.056 66.667 7.13 7.13 35.22 4.34
584 1644 3.731089 TGCAATTTCAAAAGGGCTTCTG 58.269 40.909 0.00 0.00 0.00 3.02
621 1681 3.944250 AATGGGAAGGTGCGCAGGG 62.944 63.158 12.22 0.00 34.06 4.45
623 1683 0.388907 CAAAATGGGAAGGTGCGCAG 60.389 55.000 12.22 0.00 34.06 5.18
867 1927 3.821055 AGAGAGCTCCGACGCTGC 61.821 66.667 10.93 2.72 41.08 5.25
868 1928 2.101965 CAGAGAGCTCCGACGCTG 59.898 66.667 10.93 6.90 41.08 5.18
869 1929 2.045829 TCAGAGAGCTCCGACGCT 60.046 61.111 10.93 0.00 44.33 5.07
870 1930 2.101380 GTCAGAGAGCTCCGACGC 59.899 66.667 10.93 0.00 28.74 5.19
871 1931 2.795297 GGTCAGAGAGCTCCGACG 59.205 66.667 10.93 0.00 37.77 5.12
872 1932 2.795297 CGGTCAGAGAGCTCCGAC 59.205 66.667 10.93 14.38 44.86 4.79
873 1933 3.134792 GCGGTCAGAGAGCTCCGA 61.135 66.667 10.93 1.62 44.86 4.55
959 2038 2.095161 GCGTCTTATATAGCGCTCTGGT 60.095 50.000 16.34 0.75 42.30 4.00
2052 3151 3.833645 CGCTTCCCGATGACCCGA 61.834 66.667 0.00 0.00 40.02 5.14
2367 3484 1.555075 CAGCTGGAGTAGGCCAAGTAA 59.445 52.381 5.01 0.00 37.52 2.24
2391 3514 4.524749 CGTAGTACGTGACCACATCATAG 58.475 47.826 14.62 0.00 40.28 2.23
2422 3545 3.004315 ACTGCGAAAACAAATCGAATGGT 59.996 39.130 6.54 0.00 42.76 3.55
2604 3744 8.797350 TGTACTGTCATGATTGAAGATGAATT 57.203 30.769 0.00 0.00 32.48 2.17
2665 3805 1.887854 TCGTTGTTAGATGGTCCACGA 59.112 47.619 0.00 0.00 0.00 4.35
2675 3815 4.818534 AGTCGTTGTAGTCGTTGTTAGA 57.181 40.909 0.00 0.00 0.00 2.10
2676 3816 5.683859 AGTAGTCGTTGTAGTCGTTGTTAG 58.316 41.667 0.00 0.00 0.00 2.34
2679 3819 4.511454 TGTAGTAGTCGTTGTAGTCGTTGT 59.489 41.667 0.00 0.00 0.00 3.32
2680 3820 5.022335 TGTAGTAGTCGTTGTAGTCGTTG 57.978 43.478 0.00 0.00 0.00 4.10
2681 3821 5.673337 TTGTAGTAGTCGTTGTAGTCGTT 57.327 39.130 0.00 0.00 0.00 3.85
2682 3822 5.466728 TCTTTGTAGTAGTCGTTGTAGTCGT 59.533 40.000 0.00 0.00 0.00 4.34
2683 3823 5.787551 GTCTTTGTAGTAGTCGTTGTAGTCG 59.212 44.000 0.00 0.00 0.00 4.18
2684 3824 6.896969 AGTCTTTGTAGTAGTCGTTGTAGTC 58.103 40.000 0.00 0.00 0.00 2.59
2685 3825 6.874288 AGTCTTTGTAGTAGTCGTTGTAGT 57.126 37.500 0.00 0.00 0.00 2.73
2686 3826 7.800767 TGTAGTCTTTGTAGTAGTCGTTGTAG 58.199 38.462 0.00 0.00 0.00 2.74
2687 3827 7.728847 TGTAGTCTTTGTAGTAGTCGTTGTA 57.271 36.000 0.00 0.00 0.00 2.41
2688 3828 6.624352 TGTAGTCTTTGTAGTAGTCGTTGT 57.376 37.500 0.00 0.00 0.00 3.32
2689 3829 6.087820 GCTTGTAGTCTTTGTAGTAGTCGTTG 59.912 42.308 0.00 0.00 0.00 4.10
2690 3830 6.148264 GCTTGTAGTCTTTGTAGTAGTCGTT 58.852 40.000 0.00 0.00 0.00 3.85
2691 3831 5.240183 TGCTTGTAGTCTTTGTAGTAGTCGT 59.760 40.000 0.00 0.00 0.00 4.34
2692 3832 5.568296 GTGCTTGTAGTCTTTGTAGTAGTCG 59.432 44.000 0.00 0.00 0.00 4.18
2693 3833 6.679843 AGTGCTTGTAGTCTTTGTAGTAGTC 58.320 40.000 0.00 0.00 0.00 2.59
2694 3834 6.490721 AGAGTGCTTGTAGTCTTTGTAGTAGT 59.509 38.462 0.00 0.00 0.00 2.73
2695 3835 6.915349 AGAGTGCTTGTAGTCTTTGTAGTAG 58.085 40.000 0.00 0.00 0.00 2.57
2696 3836 6.489022 TGAGAGTGCTTGTAGTCTTTGTAGTA 59.511 38.462 0.00 0.00 30.66 1.82
2697 3837 5.302059 TGAGAGTGCTTGTAGTCTTTGTAGT 59.698 40.000 0.00 0.00 30.66 2.73
2698 3838 5.773575 TGAGAGTGCTTGTAGTCTTTGTAG 58.226 41.667 0.00 0.00 30.66 2.74
2699 3839 5.535030 TCTGAGAGTGCTTGTAGTCTTTGTA 59.465 40.000 0.00 0.00 30.66 2.41
2700 3840 4.342378 TCTGAGAGTGCTTGTAGTCTTTGT 59.658 41.667 0.00 0.00 30.66 2.83
2701 3841 4.876125 TCTGAGAGTGCTTGTAGTCTTTG 58.124 43.478 0.00 0.00 30.66 2.77
2702 3842 5.537300 TTCTGAGAGTGCTTGTAGTCTTT 57.463 39.130 0.00 0.00 30.66 2.52
2703 3843 5.537300 TTTCTGAGAGTGCTTGTAGTCTT 57.463 39.130 0.00 0.00 30.66 3.01
2704 3844 5.163405 TGTTTTCTGAGAGTGCTTGTAGTCT 60.163 40.000 0.00 0.00 33.14 3.24
2705 3845 5.050490 TGTTTTCTGAGAGTGCTTGTAGTC 58.950 41.667 0.00 0.00 0.00 2.59
2706 3846 5.023533 TGTTTTCTGAGAGTGCTTGTAGT 57.976 39.130 0.00 0.00 0.00 2.73
2707 3847 5.557136 CGTTGTTTTCTGAGAGTGCTTGTAG 60.557 44.000 0.00 0.00 0.00 2.74
2708 3848 4.270084 CGTTGTTTTCTGAGAGTGCTTGTA 59.730 41.667 0.00 0.00 0.00 2.41
2709 3849 3.063997 CGTTGTTTTCTGAGAGTGCTTGT 59.936 43.478 0.00 0.00 0.00 3.16
2710 3850 3.309682 TCGTTGTTTTCTGAGAGTGCTTG 59.690 43.478 0.00 0.00 0.00 4.01
2711 3851 3.309954 GTCGTTGTTTTCTGAGAGTGCTT 59.690 43.478 0.00 0.00 0.00 3.91
2712 3852 2.866762 GTCGTTGTTTTCTGAGAGTGCT 59.133 45.455 0.00 0.00 0.00 4.40
2713 3853 2.866762 AGTCGTTGTTTTCTGAGAGTGC 59.133 45.455 0.00 0.00 0.00 4.40
2714 3854 5.041287 TGTAGTCGTTGTTTTCTGAGAGTG 58.959 41.667 0.00 0.00 0.00 3.51
2715 3855 5.258456 TGTAGTCGTTGTTTTCTGAGAGT 57.742 39.130 0.00 0.00 0.00 3.24
2716 3856 5.332656 GCTTGTAGTCGTTGTTTTCTGAGAG 60.333 44.000 0.00 0.00 0.00 3.20
2717 3857 4.506654 GCTTGTAGTCGTTGTTTTCTGAGA 59.493 41.667 0.00 0.00 0.00 3.27
2718 3858 4.270084 TGCTTGTAGTCGTTGTTTTCTGAG 59.730 41.667 0.00 0.00 0.00 3.35
2719 3859 4.033587 GTGCTTGTAGTCGTTGTTTTCTGA 59.966 41.667 0.00 0.00 0.00 3.27
2720 3860 4.034048 AGTGCTTGTAGTCGTTGTTTTCTG 59.966 41.667 0.00 0.00 0.00 3.02
2721 3861 4.034048 CAGTGCTTGTAGTCGTTGTTTTCT 59.966 41.667 0.00 0.00 0.00 2.52
2722 3862 4.271687 CAGTGCTTGTAGTCGTTGTTTTC 58.728 43.478 0.00 0.00 0.00 2.29
2723 3863 3.064820 CCAGTGCTTGTAGTCGTTGTTTT 59.935 43.478 0.00 0.00 0.00 2.43
2724 3864 2.612212 CCAGTGCTTGTAGTCGTTGTTT 59.388 45.455 0.00 0.00 0.00 2.83
2725 3865 2.159014 TCCAGTGCTTGTAGTCGTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
2726 3866 1.411246 TCCAGTGCTTGTAGTCGTTGT 59.589 47.619 0.00 0.00 0.00 3.32
2772 3912 1.533033 TCTGGTGAAGGAGTGGCGA 60.533 57.895 0.00 0.00 0.00 5.54
2775 3915 1.298014 GGCTCTGGTGAAGGAGTGG 59.702 63.158 0.00 0.00 32.67 4.00
2777 3917 1.835927 GCTGGCTCTGGTGAAGGAGT 61.836 60.000 0.00 0.00 32.67 3.85
2782 3922 0.823356 GTTTGGCTGGCTCTGGTGAA 60.823 55.000 2.00 0.00 0.00 3.18
2788 3928 0.106015 AACAAGGTTTGGCTGGCTCT 60.106 50.000 2.00 0.00 34.12 4.09
2794 3934 5.381757 TGTCTAATACAACAAGGTTTGGCT 58.618 37.500 0.00 0.00 34.29 4.75
2796 3936 6.347402 CGACTGTCTAATACAACAAGGTTTGG 60.347 42.308 6.21 0.00 37.74 3.28
2800 3940 4.322499 CCCGACTGTCTAATACAACAAGGT 60.322 45.833 6.21 0.00 37.74 3.50
2811 3951 2.422479 CGATGACTTCCCGACTGTCTAA 59.578 50.000 6.21 0.00 0.00 2.10
2835 3975 2.171027 CGTTGGTACTATGGGGCCTTAA 59.829 50.000 0.84 0.00 0.00 1.85
2849 3989 2.794103 TGCTAGTCTGGTACGTTGGTA 58.206 47.619 0.00 0.00 0.00 3.25
2857 3997 2.426024 GACGATGGTTGCTAGTCTGGTA 59.574 50.000 0.00 0.00 0.00 3.25
2864 4004 2.492019 TCATCGACGATGGTTGCTAG 57.508 50.000 31.58 9.24 40.15 3.42
2912 4052 4.454504 GTGTCTTCATTCGGGTGTTTACAT 59.545 41.667 0.00 0.00 0.00 2.29
2938 4078 0.541998 TCGTGAGAGGGTGTGTGGAT 60.542 55.000 0.00 0.00 34.84 3.41
2953 4093 2.670905 TGATGGTGCGTCTAAAATCGTG 59.329 45.455 0.00 0.00 0.00 4.35
2959 4099 1.403647 CGTCCTGATGGTGCGTCTAAA 60.404 52.381 0.00 0.00 34.23 1.85
2974 4114 1.041447 CCACGTTCTATCCCCGTCCT 61.041 60.000 0.00 0.00 31.46 3.85
2978 4118 0.248289 AACACCACGTTCTATCCCCG 59.752 55.000 0.00 0.00 29.27 5.73
2990 4130 0.107268 ACTACGTTCCCCAACACCAC 59.893 55.000 0.00 0.00 32.14 4.16
3076 4219 0.896940 ACGAGGGTACGTGGACACAT 60.897 55.000 0.00 0.00 44.84 3.21
3112 4255 6.218019 ACTACATCAACTGCGTTACTAAACA 58.782 36.000 0.00 0.00 35.16 2.83
3125 4269 4.474113 GAAGACGTTCGACTACATCAACT 58.526 43.478 0.00 0.00 0.00 3.16
3270 4414 0.535335 ATCATTACCGTCACCACGCT 59.465 50.000 0.00 0.00 45.29 5.07
3284 4428 0.944386 GCGCCGGTAACATCATCATT 59.056 50.000 1.90 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.