Multiple sequence alignment - TraesCS5B01G336000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G336000 chr5B 100.000 3164 0 0 1 3164 519017501 519020664 0.000000e+00 5843.0
1 TraesCS5B01G336000 chr5B 94.624 279 14 1 2431 2709 92673938 92673661 6.270000e-117 431.0
2 TraesCS5B01G336000 chr5A 90.985 1686 76 36 552 2196 545600668 545602318 0.000000e+00 2202.0
3 TraesCS5B01G336000 chr5A 84.928 418 24 17 47 440 545600219 545600621 1.380000e-103 387.0
4 TraesCS5B01G336000 chr5A 90.083 242 13 9 2193 2430 545602363 545602597 1.430000e-78 303.0
5 TraesCS5B01G336000 chr5A 91.720 157 9 4 2733 2886 545602655 545602810 6.870000e-52 215.0
6 TraesCS5B01G336000 chr5A 100.000 36 0 0 2699 2734 545602596 545602631 2.040000e-07 67.6
7 TraesCS5B01G336000 chr5D 91.202 1614 75 32 621 2196 429742373 429743957 0.000000e+00 2132.0
8 TraesCS5B01G336000 chr5D 90.866 635 28 15 7 623 429739807 429740429 0.000000e+00 824.0
9 TraesCS5B01G336000 chr5D 87.324 497 24 11 2699 3164 429744238 429744726 1.670000e-147 532.0
10 TraesCS5B01G336000 chr5D 96.596 235 6 2 2197 2430 429744006 429744239 3.830000e-104 388.0
11 TraesCS5B01G336000 chr3B 96.324 272 10 0 2431 2702 403420789 403420518 6.230000e-122 448.0
12 TraesCS5B01G336000 chr7B 95.588 272 12 0 2431 2702 283010556 283010827 1.350000e-118 436.0
13 TraesCS5B01G336000 chr6B 95.911 269 11 0 2431 2699 715670707 715670439 1.350000e-118 436.0
14 TraesCS5B01G336000 chr2A 95.255 274 12 1 2431 2704 715378735 715379007 1.740000e-117 433.0
15 TraesCS5B01G336000 chr1B 95.238 273 13 0 2431 2703 563052393 563052665 1.740000e-117 433.0
16 TraesCS5B01G336000 chr1B 95.238 273 12 1 2431 2703 388145575 388145846 6.270000e-117 431.0
17 TraesCS5B01G336000 chr1B 94.891 274 13 1 2431 2704 660082065 660082337 8.110000e-116 427.0
18 TraesCS5B01G336000 chr7A 95.238 273 12 1 2431 2703 610710446 610710717 6.270000e-117 431.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G336000 chr5B 519017501 519020664 3163 False 5843.00 5843 100.0000 1 3164 1 chr5B.!!$F1 3163
1 TraesCS5B01G336000 chr5A 545600219 545602810 2591 False 634.92 2202 91.5432 47 2886 5 chr5A.!!$F1 2839
2 TraesCS5B01G336000 chr5D 429739807 429744726 4919 False 969.00 2132 91.4970 7 3164 4 chr5D.!!$F1 3157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 2807 0.249322 CGCGGGGATTAATGACGAGT 60.249 55.000 0.00 0.0 0.0 4.18 F
1029 3045 1.822990 CAGGACCAGTACACCGTACAT 59.177 52.381 7.02 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 4044 0.096976 GATCGACACGTTTGGCATGG 59.903 55.0 0.0 0.0 0.00 3.66 R
2667 4760 0.178831 ATGGGGAGGAACTTGGGAGT 60.179 55.0 0.0 0.0 41.55 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 43 5.715434 TTTTAAGGTAACCAAGGCATGTC 57.285 39.130 0.00 0.00 37.17 3.06
109 117 3.065233 CAGTGTAAACAGCAAGCTCAACA 59.935 43.478 0.00 0.00 0.00 3.33
112 120 4.862018 GTGTAAACAGCAAGCTCAACAAAA 59.138 37.500 0.00 0.00 0.00 2.44
192 210 8.904099 AAGAAAGAAAGAAAAATAGGACGAGA 57.096 30.769 0.00 0.00 0.00 4.04
193 211 8.541133 AGAAAGAAAGAAAAATAGGACGAGAG 57.459 34.615 0.00 0.00 0.00 3.20
207 225 1.690633 GAGAGCTGATCCCCACCCA 60.691 63.158 0.00 0.00 0.00 4.51
217 235 1.231641 CCCCACCCACAGGTCAAAA 59.768 57.895 0.00 0.00 46.45 2.44
219 237 1.112916 CCCACCCACAGGTCAAAACC 61.113 60.000 0.00 0.00 46.45 3.27
220 238 0.396417 CCACCCACAGGTCAAAACCA 60.396 55.000 0.00 0.00 46.45 3.67
250 269 3.840124 ACGGGAGAAACTTTCTTCACT 57.160 42.857 11.32 0.00 40.87 3.41
255 274 4.755629 GGGAGAAACTTTCTTCACTGGTAC 59.244 45.833 11.32 0.00 40.87 3.34
256 275 4.448060 GGAGAAACTTTCTTCACTGGTACG 59.552 45.833 5.49 0.00 40.87 3.67
257 276 5.019785 AGAAACTTTCTTCACTGGTACGT 57.980 39.130 0.00 0.00 36.36 3.57
258 277 6.152932 AGAAACTTTCTTCACTGGTACGTA 57.847 37.500 0.00 0.00 36.36 3.57
259 278 6.214399 AGAAACTTTCTTCACTGGTACGTAG 58.786 40.000 0.00 0.00 36.36 3.51
260 279 6.183360 AGAAACTTTCTTCACTGGTACGTAGT 60.183 38.462 0.00 0.00 40.56 2.73
261 280 6.639632 AACTTTCTTCACTGGTACGTAGTA 57.360 37.500 0.00 0.00 45.11 1.82
418 444 2.036572 TGGGACGGAATTTGGCCC 59.963 61.111 14.28 14.28 39.29 5.80
807 2803 2.604174 CGCCGCGGGGATTAATGAC 61.604 63.158 36.48 9.30 34.06 3.06
811 2807 0.249322 CGCGGGGATTAATGACGAGT 60.249 55.000 0.00 0.00 0.00 4.18
813 2809 2.673833 GCGGGGATTAATGACGAGTAG 58.326 52.381 0.00 0.00 0.00 2.57
814 2810 2.035576 GCGGGGATTAATGACGAGTAGT 59.964 50.000 0.00 0.00 0.00 2.73
815 2811 3.492137 GCGGGGATTAATGACGAGTAGTT 60.492 47.826 0.00 0.00 0.00 2.24
816 2812 4.296690 CGGGGATTAATGACGAGTAGTTC 58.703 47.826 0.00 0.00 0.00 3.01
818 2814 5.290386 GGGGATTAATGACGAGTAGTTCTG 58.710 45.833 0.00 0.00 0.00 3.02
819 2815 5.163437 GGGGATTAATGACGAGTAGTTCTGT 60.163 44.000 0.00 0.00 0.00 3.41
820 2816 6.040166 GGGGATTAATGACGAGTAGTTCTGTA 59.960 42.308 0.00 0.00 0.00 2.74
821 2817 6.916932 GGGATTAATGACGAGTAGTTCTGTAC 59.083 42.308 0.00 0.00 0.00 2.90
822 2818 6.916932 GGATTAATGACGAGTAGTTCTGTACC 59.083 42.308 0.00 0.00 0.00 3.34
823 2819 6.822667 TTAATGACGAGTAGTTCTGTACCA 57.177 37.500 0.00 0.00 0.00 3.25
967 2979 2.536761 TTTACTCCGTCACCAACCAG 57.463 50.000 0.00 0.00 0.00 4.00
1029 3045 1.822990 CAGGACCAGTACACCGTACAT 59.177 52.381 7.02 0.00 0.00 2.29
1192 3225 3.649277 CTTCCTCAGGTCCACGGCG 62.649 68.421 4.80 4.80 0.00 6.46
1356 3395 2.062177 GCGGTAGTAAGCAGGGGGA 61.062 63.158 0.00 0.00 0.00 4.81
1588 3627 4.361971 TCCCGACGGAGCAGGTCT 62.362 66.667 17.49 0.00 32.86 3.85
2021 4060 2.126888 GCCATGCCAAACGTGTCG 60.127 61.111 0.00 0.00 33.01 4.35
2022 4061 2.612567 GCCATGCCAAACGTGTCGA 61.613 57.895 0.00 0.00 33.01 4.20
2039 4078 4.030753 GTGTCGATCGTCTGTTCTTTCATC 59.969 45.833 15.94 0.00 0.00 2.92
2040 4079 3.548268 GTCGATCGTCTGTTCTTTCATCC 59.452 47.826 15.94 0.00 0.00 3.51
2041 4080 2.860735 CGATCGTCTGTTCTTTCATCCC 59.139 50.000 7.03 0.00 0.00 3.85
2043 4082 4.202020 CGATCGTCTGTTCTTTCATCCCTA 60.202 45.833 7.03 0.00 0.00 3.53
2044 4083 4.720649 TCGTCTGTTCTTTCATCCCTAG 57.279 45.455 0.00 0.00 0.00 3.02
2045 4084 4.341487 TCGTCTGTTCTTTCATCCCTAGA 58.659 43.478 0.00 0.00 0.00 2.43
2046 4085 4.399618 TCGTCTGTTCTTTCATCCCTAGAG 59.600 45.833 0.00 0.00 0.00 2.43
2047 4086 4.158764 CGTCTGTTCTTTCATCCCTAGAGT 59.841 45.833 0.00 0.00 0.00 3.24
2048 4087 5.336849 CGTCTGTTCTTTCATCCCTAGAGTT 60.337 44.000 0.00 0.00 0.00 3.01
2056 4095 6.497259 TCTTTCATCCCTAGAGTTTGTACAGT 59.503 38.462 0.00 0.00 0.00 3.55
2059 4098 6.491383 TCATCCCTAGAGTTTGTACAGTAGT 58.509 40.000 0.00 0.00 0.00 2.73
2060 4099 6.377429 TCATCCCTAGAGTTTGTACAGTAGTG 59.623 42.308 0.00 0.00 0.00 2.74
2085 4124 7.022384 GGTATACTTCTACGTGATGCTCATAC 58.978 42.308 0.00 5.67 0.00 2.39
2086 4125 4.983671 ACTTCTACGTGATGCTCATACA 57.016 40.909 0.00 0.00 0.00 2.29
2088 4127 5.720202 ACTTCTACGTGATGCTCATACAAA 58.280 37.500 0.00 0.00 0.00 2.83
2089 4128 5.807520 ACTTCTACGTGATGCTCATACAAAG 59.192 40.000 0.00 0.00 0.00 2.77
2090 4129 5.324784 TCTACGTGATGCTCATACAAAGT 57.675 39.130 0.00 0.00 0.00 2.66
2093 4132 4.433615 ACGTGATGCTCATACAAAGTAGG 58.566 43.478 0.00 0.00 0.00 3.18
2094 4133 4.081642 ACGTGATGCTCATACAAAGTAGGT 60.082 41.667 0.00 0.00 0.00 3.08
2095 4134 5.126545 ACGTGATGCTCATACAAAGTAGGTA 59.873 40.000 0.00 0.00 0.00 3.08
2096 4135 5.687730 CGTGATGCTCATACAAAGTAGGTAG 59.312 44.000 0.00 0.00 0.00 3.18
2097 4136 6.574350 GTGATGCTCATACAAAGTAGGTAGT 58.426 40.000 0.00 0.00 0.00 2.73
2098 4137 7.468220 CGTGATGCTCATACAAAGTAGGTAGTA 60.468 40.741 0.00 0.00 0.00 1.82
2100 4139 8.577296 TGATGCTCATACAAAGTAGGTAGTATC 58.423 37.037 0.00 0.00 0.00 2.24
2101 4140 6.967135 TGCTCATACAAAGTAGGTAGTATCG 58.033 40.000 0.00 0.00 0.00 2.92
2102 4141 6.769341 TGCTCATACAAAGTAGGTAGTATCGA 59.231 38.462 0.00 0.00 0.00 3.59
2119 4161 7.948513 AGTATCGATTTGATTTTGTAAACGC 57.051 32.000 1.71 0.00 38.57 4.84
2129 4171 3.733024 TTTGTAAACGCGTGATGATCC 57.267 42.857 14.98 0.00 0.00 3.36
2130 4172 1.647346 TGTAAACGCGTGATGATCCC 58.353 50.000 14.98 0.00 0.00 3.85
2147 4190 5.945310 TGATCCCTATTCTGGAAGGAATTG 58.055 41.667 0.00 0.00 37.20 2.32
2153 4196 6.545298 CCCTATTCTGGAAGGAATTGAAGAAG 59.455 42.308 0.00 0.00 37.20 2.85
2190 4233 3.701205 TCAGCAGGAGTGAAAGCATAA 57.299 42.857 0.00 0.00 0.00 1.90
2313 4405 1.543429 CCAAAGAGAGGCTTGGTCGTT 60.543 52.381 0.00 0.00 36.80 3.85
2337 4429 5.765182 TGTCCTCTTTTCCAAGATGAGAAAC 59.235 40.000 0.00 0.00 38.42 2.78
2341 4433 8.331740 TCCTCTTTTCCAAGATGAGAAACATAT 58.668 33.333 0.00 0.00 38.42 1.78
2428 4521 1.872237 CGGTGTCATGGTCGAAACAGT 60.872 52.381 0.00 0.00 0.00 3.55
2429 4522 1.798813 GGTGTCATGGTCGAAACAGTC 59.201 52.381 0.00 0.00 0.00 3.51
2441 4534 4.500703 CGAAACAGTCGTCATAATGGAC 57.499 45.455 0.00 0.00 45.09 4.02
2442 4535 3.924073 CGAAACAGTCGTCATAATGGACA 59.076 43.478 0.00 0.00 45.09 4.02
2443 4536 4.387559 CGAAACAGTCGTCATAATGGACAA 59.612 41.667 0.00 0.00 45.09 3.18
2444 4537 5.444613 CGAAACAGTCGTCATAATGGACAAG 60.445 44.000 0.00 0.00 45.09 3.16
2445 4538 4.801330 ACAGTCGTCATAATGGACAAGA 57.199 40.909 0.00 0.00 37.66 3.02
2446 4539 5.147330 ACAGTCGTCATAATGGACAAGAA 57.853 39.130 0.00 0.00 37.66 2.52
2447 4540 4.929808 ACAGTCGTCATAATGGACAAGAAC 59.070 41.667 0.00 0.00 37.66 3.01
2448 4541 4.929211 CAGTCGTCATAATGGACAAGAACA 59.071 41.667 0.00 0.00 37.66 3.18
2449 4542 5.582269 CAGTCGTCATAATGGACAAGAACAT 59.418 40.000 0.00 0.00 37.66 2.71
2450 4543 6.756542 CAGTCGTCATAATGGACAAGAACATA 59.243 38.462 0.00 0.00 37.66 2.29
2451 4544 7.277760 CAGTCGTCATAATGGACAAGAACATAA 59.722 37.037 0.00 0.00 37.66 1.90
2452 4545 7.492669 AGTCGTCATAATGGACAAGAACATAAG 59.507 37.037 0.00 0.00 37.66 1.73
2453 4546 6.257849 TCGTCATAATGGACAAGAACATAAGC 59.742 38.462 0.00 0.00 37.66 3.09
2454 4547 6.037062 CGTCATAATGGACAAGAACATAAGCA 59.963 38.462 0.00 0.00 37.66 3.91
2455 4548 7.413988 CGTCATAATGGACAAGAACATAAGCAA 60.414 37.037 0.00 0.00 37.66 3.91
2456 4549 7.912250 GTCATAATGGACAAGAACATAAGCAAG 59.088 37.037 0.00 0.00 37.73 4.01
2457 4550 7.611467 TCATAATGGACAAGAACATAAGCAAGT 59.389 33.333 0.00 0.00 0.00 3.16
2458 4551 8.892723 CATAATGGACAAGAACATAAGCAAGTA 58.107 33.333 0.00 0.00 0.00 2.24
2459 4552 7.759489 AATGGACAAGAACATAAGCAAGTAA 57.241 32.000 0.00 0.00 0.00 2.24
2460 4553 6.554334 TGGACAAGAACATAAGCAAGTAAC 57.446 37.500 0.00 0.00 0.00 2.50
2461 4554 6.296026 TGGACAAGAACATAAGCAAGTAACT 58.704 36.000 0.00 0.00 0.00 2.24
2462 4555 6.770785 TGGACAAGAACATAAGCAAGTAACTT 59.229 34.615 0.00 0.00 0.00 2.66
2463 4556 7.934665 TGGACAAGAACATAAGCAAGTAACTTA 59.065 33.333 0.00 0.00 34.29 2.24
2464 4557 8.228464 GGACAAGAACATAAGCAAGTAACTTAC 58.772 37.037 0.00 0.00 32.67 2.34
2465 4558 8.671384 ACAAGAACATAAGCAAGTAACTTACA 57.329 30.769 1.79 0.00 32.67 2.41
2466 4559 8.557029 ACAAGAACATAAGCAAGTAACTTACAC 58.443 33.333 1.79 0.00 32.67 2.90
2467 4560 8.556194 CAAGAACATAAGCAAGTAACTTACACA 58.444 33.333 1.79 0.00 32.67 3.72
2468 4561 8.848474 AGAACATAAGCAAGTAACTTACACAT 57.152 30.769 1.79 0.00 32.67 3.21
2469 4562 9.938280 AGAACATAAGCAAGTAACTTACACATA 57.062 29.630 1.79 0.00 32.67 2.29
2495 4588 9.884814 ATTTCTAGACTATGTTACTACCTCCAT 57.115 33.333 0.00 0.00 0.00 3.41
2499 4592 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
2500 4593 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
2501 4594 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
2502 4595 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
2503 4596 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
2509 4602 3.798515 ACCTCCATAGTGGGTAGAAACA 58.201 45.455 0.00 0.00 38.32 2.83
2510 4603 4.371681 ACCTCCATAGTGGGTAGAAACAT 58.628 43.478 0.00 0.00 38.32 2.71
2511 4604 4.409247 ACCTCCATAGTGGGTAGAAACATC 59.591 45.833 0.00 0.00 38.32 3.06
2512 4605 4.656112 CCTCCATAGTGGGTAGAAACATCT 59.344 45.833 0.00 0.00 38.32 2.90
2513 4606 5.839063 CCTCCATAGTGGGTAGAAACATCTA 59.161 44.000 0.00 0.00 38.32 1.98
2514 4607 6.498651 CCTCCATAGTGGGTAGAAACATCTAT 59.501 42.308 0.00 0.00 38.32 1.98
2515 4608 7.303182 TCCATAGTGGGTAGAAACATCTATG 57.697 40.000 0.00 0.00 38.32 2.23
2516 4609 6.844388 TCCATAGTGGGTAGAAACATCTATGT 59.156 38.462 0.00 0.00 39.54 2.29
2517 4610 8.008332 TCCATAGTGGGTAGAAACATCTATGTA 58.992 37.037 0.00 0.00 37.90 2.29
2518 4611 8.307483 CCATAGTGGGTAGAAACATCTATGTAG 58.693 40.741 0.00 0.00 35.14 2.74
2519 4612 8.861086 CATAGTGGGTAGAAACATCTATGTAGT 58.139 37.037 0.00 0.00 40.80 2.73
2520 4613 7.113658 AGTGGGTAGAAACATCTATGTAGTG 57.886 40.000 0.00 0.00 40.80 2.74
2521 4614 6.668283 AGTGGGTAGAAACATCTATGTAGTGT 59.332 38.462 0.00 0.00 40.80 3.55
2522 4615 6.979238 GTGGGTAGAAACATCTATGTAGTGTC 59.021 42.308 0.00 0.00 40.80 3.67
2523 4616 6.666113 TGGGTAGAAACATCTATGTAGTGTCA 59.334 38.462 0.00 0.00 40.80 3.58
2524 4617 7.344612 TGGGTAGAAACATCTATGTAGTGTCAT 59.655 37.037 0.00 0.00 40.80 3.06
2525 4618 7.653713 GGGTAGAAACATCTATGTAGTGTCATG 59.346 40.741 0.00 0.00 40.80 3.07
2526 4619 7.169982 GGTAGAAACATCTATGTAGTGTCATGC 59.830 40.741 0.00 0.00 40.80 4.06
2527 4620 6.643388 AGAAACATCTATGTAGTGTCATGCA 58.357 36.000 0.00 0.00 40.80 3.96
2528 4621 7.105588 AGAAACATCTATGTAGTGTCATGCAA 58.894 34.615 0.00 0.00 40.80 4.08
2529 4622 6.668541 AACATCTATGTAGTGTCATGCAAC 57.331 37.500 0.00 0.00 40.80 4.17
2530 4623 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
2531 4624 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
2532 4625 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
2533 4626 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
2534 4627 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
2535 4628 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
2536 4629 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
2537 4630 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
2538 4631 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
2539 4632 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
2540 4633 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
2541 4634 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
2542 4635 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
2543 4636 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
2544 4637 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
2545 4638 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
2546 4639 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
2547 4640 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
2582 4675 3.961477 TTTGAAGTGTGTGATGTTCCG 57.039 42.857 0.00 0.00 0.00 4.30
2583 4676 1.877637 TGAAGTGTGTGATGTTCCGG 58.122 50.000 0.00 0.00 0.00 5.14
2584 4677 1.140052 TGAAGTGTGTGATGTTCCGGT 59.860 47.619 0.00 0.00 0.00 5.28
2585 4678 2.365941 TGAAGTGTGTGATGTTCCGGTA 59.634 45.455 0.00 0.00 0.00 4.02
2586 4679 3.181464 TGAAGTGTGTGATGTTCCGGTAA 60.181 43.478 0.00 0.00 0.00 2.85
2587 4680 2.762745 AGTGTGTGATGTTCCGGTAAC 58.237 47.619 0.00 5.56 38.67 2.50
2588 4681 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
2589 4682 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
2590 4683 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
2591 4684 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
2592 4685 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
2593 4686 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
2594 4687 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
2595 4688 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
2596 4689 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
2598 4691 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
2607 4700 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
2608 4701 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
2609 4702 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
2610 4703 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
2611 4704 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
2612 4705 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
2613 4706 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
2614 4707 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
2615 4708 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
2616 4709 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
2617 4710 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
2618 4711 1.771255 ACCACAAGCACCTCTCTCTTT 59.229 47.619 0.00 0.00 0.00 2.52
2619 4712 2.972713 ACCACAAGCACCTCTCTCTTTA 59.027 45.455 0.00 0.00 0.00 1.85
2620 4713 3.584848 ACCACAAGCACCTCTCTCTTTAT 59.415 43.478 0.00 0.00 0.00 1.40
2621 4714 4.042187 ACCACAAGCACCTCTCTCTTTATT 59.958 41.667 0.00 0.00 0.00 1.40
2622 4715 5.248477 ACCACAAGCACCTCTCTCTTTATTA 59.752 40.000 0.00 0.00 0.00 0.98
2623 4716 6.173339 CCACAAGCACCTCTCTCTTTATTAA 58.827 40.000 0.00 0.00 0.00 1.40
2624 4717 6.655003 CCACAAGCACCTCTCTCTTTATTAAA 59.345 38.462 0.00 0.00 0.00 1.52
2625 4718 7.337942 CCACAAGCACCTCTCTCTTTATTAAAT 59.662 37.037 0.00 0.00 0.00 1.40
2626 4719 9.383519 CACAAGCACCTCTCTCTTTATTAAATA 57.616 33.333 0.00 0.00 0.00 1.40
2630 4723 9.553064 AGCACCTCTCTCTTTATTAAATATGTG 57.447 33.333 0.00 0.00 0.00 3.21
2631 4724 8.286097 GCACCTCTCTCTTTATTAAATATGTGC 58.714 37.037 0.00 0.00 35.67 4.57
2632 4725 8.778358 CACCTCTCTCTTTATTAAATATGTGCC 58.222 37.037 0.00 0.00 0.00 5.01
2633 4726 8.494433 ACCTCTCTCTTTATTAAATATGTGCCA 58.506 33.333 0.00 0.00 0.00 4.92
2634 4727 8.778358 CCTCTCTCTTTATTAAATATGTGCCAC 58.222 37.037 0.00 0.00 0.00 5.01
2635 4728 9.330063 CTCTCTCTTTATTAAATATGTGCCACA 57.670 33.333 0.00 0.00 0.00 4.17
2636 4729 9.851686 TCTCTCTTTATTAAATATGTGCCACAT 57.148 29.630 15.69 15.69 42.35 3.21
2641 4734 9.964303 CTTTATTAAATATGTGCCACATAAGCA 57.036 29.630 20.57 6.59 43.50 3.91
2644 4737 8.876275 ATTAAATATGTGCCACATAAGCAAAG 57.124 30.769 20.57 0.00 43.50 2.77
2645 4738 5.920193 AATATGTGCCACATAAGCAAAGT 57.080 34.783 20.57 0.54 43.50 2.66
2646 4739 5.920193 ATATGTGCCACATAAGCAAAGTT 57.080 34.783 20.57 0.00 43.50 2.66
2647 4740 3.367992 TGTGCCACATAAGCAAAGTTG 57.632 42.857 0.00 0.00 43.02 3.16
2648 4741 2.692557 TGTGCCACATAAGCAAAGTTGT 59.307 40.909 0.00 0.00 43.02 3.32
2649 4742 3.885901 TGTGCCACATAAGCAAAGTTGTA 59.114 39.130 0.00 0.00 43.02 2.41
2650 4743 4.522405 TGTGCCACATAAGCAAAGTTGTAT 59.478 37.500 0.00 0.00 43.02 2.29
2651 4744 5.010516 TGTGCCACATAAGCAAAGTTGTATT 59.989 36.000 0.00 0.00 43.02 1.89
2652 4745 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
2653 4746 4.864247 GCCACATAAGCAAAGTTGTATTGG 59.136 41.667 0.00 0.00 0.00 3.16
2654 4747 5.336372 GCCACATAAGCAAAGTTGTATTGGA 60.336 40.000 0.00 0.00 0.00 3.53
2655 4748 6.324819 CCACATAAGCAAAGTTGTATTGGAG 58.675 40.000 0.00 0.00 0.00 3.86
2656 4749 6.071952 CCACATAAGCAAAGTTGTATTGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
2657 4750 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
2658 4751 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
2659 4752 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
2660 4753 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
2661 4754 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
2662 4755 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
2663 4756 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
2664 4757 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
2665 4758 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
2666 4759 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
2667 4760 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
2668 4761 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
2669 4762 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
2670 4763 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
2673 4766 3.678056 GAGTGTGTGATGTTACTCCCA 57.322 47.619 0.00 0.00 34.84 4.37
2674 4767 4.002906 GAGTGTGTGATGTTACTCCCAA 57.997 45.455 0.00 0.00 34.84 4.12
2675 4768 3.997021 GAGTGTGTGATGTTACTCCCAAG 59.003 47.826 0.00 0.00 34.84 3.61
2676 4769 3.391296 AGTGTGTGATGTTACTCCCAAGT 59.609 43.478 0.00 0.00 39.66 3.16
2677 4770 4.134563 GTGTGTGATGTTACTCCCAAGTT 58.865 43.478 0.00 0.00 36.92 2.66
2678 4771 4.213482 GTGTGTGATGTTACTCCCAAGTTC 59.787 45.833 0.00 0.00 36.92 3.01
2679 4772 3.751698 GTGTGATGTTACTCCCAAGTTCC 59.248 47.826 0.00 0.00 36.92 3.62
2680 4773 3.650942 TGTGATGTTACTCCCAAGTTCCT 59.349 43.478 0.00 0.00 36.92 3.36
2681 4774 4.254492 GTGATGTTACTCCCAAGTTCCTC 58.746 47.826 0.00 0.00 36.92 3.71
2682 4775 3.263425 TGATGTTACTCCCAAGTTCCTCC 59.737 47.826 0.00 0.00 36.92 4.30
2683 4776 1.982958 TGTTACTCCCAAGTTCCTCCC 59.017 52.381 0.00 0.00 36.92 4.30
2684 4777 1.281287 GTTACTCCCAAGTTCCTCCCC 59.719 57.143 0.00 0.00 36.92 4.81
2685 4778 0.494551 TACTCCCAAGTTCCTCCCCA 59.505 55.000 0.00 0.00 36.92 4.96
2686 4779 0.178831 ACTCCCAAGTTCCTCCCCAT 60.179 55.000 0.00 0.00 28.74 4.00
2687 4780 1.002857 CTCCCAAGTTCCTCCCCATT 58.997 55.000 0.00 0.00 0.00 3.16
2688 4781 0.704076 TCCCAAGTTCCTCCCCATTG 59.296 55.000 0.00 0.00 0.00 2.82
2689 4782 0.409484 CCCAAGTTCCTCCCCATTGT 59.591 55.000 0.00 0.00 0.00 2.71
2690 4783 1.549203 CCAAGTTCCTCCCCATTGTG 58.451 55.000 0.00 0.00 0.00 3.33
2691 4784 1.075374 CCAAGTTCCTCCCCATTGTGA 59.925 52.381 0.00 0.00 0.00 3.58
2692 4785 2.162681 CAAGTTCCTCCCCATTGTGAC 58.837 52.381 0.00 0.00 0.00 3.67
2693 4786 0.698818 AGTTCCTCCCCATTGTGACC 59.301 55.000 0.00 0.00 0.00 4.02
2694 4787 0.404040 GTTCCTCCCCATTGTGACCA 59.596 55.000 0.00 0.00 0.00 4.02
2695 4788 0.698238 TTCCTCCCCATTGTGACCAG 59.302 55.000 0.00 0.00 0.00 4.00
2696 4789 1.379044 CCTCCCCATTGTGACCAGC 60.379 63.158 0.00 0.00 0.00 4.85
2697 4790 1.379044 CTCCCCATTGTGACCAGCC 60.379 63.158 0.00 0.00 0.00 4.85
2753 4871 2.928116 CCCGATCGATCATCATGTCATG 59.072 50.000 24.40 6.47 0.00 3.07
2758 4876 5.388164 CGATCGATCATCATGTCATGTTCAC 60.388 44.000 24.40 2.24 0.00 3.18
2775 4893 2.560504 TCACAGCAGTTTTGTGTCGAT 58.439 42.857 5.41 0.00 44.77 3.59
2834 4954 1.148310 ATGAGCGTGGAGTGTTTTCG 58.852 50.000 0.00 0.00 0.00 3.46
2853 4973 4.079980 TCGGTCTCAGAATTTTGGTCAA 57.920 40.909 0.00 0.00 0.00 3.18
2887 5007 0.535335 GTAGACTTGGATGTCGGCCA 59.465 55.000 2.24 0.00 41.47 5.36
2903 5023 3.006859 TCGGCCAGACCATCATATGTTAG 59.993 47.826 2.24 0.00 39.03 2.34
2912 5032 1.483316 TCATATGTTAGCCGAACGCG 58.517 50.000 3.53 3.53 44.76 6.01
2932 5053 2.479730 CGGGACTGACTCTCGTTAATGG 60.480 54.545 0.00 0.00 38.17 3.16
2947 5068 9.346005 TCTCGTTAATGGACATACTACTATTCA 57.654 33.333 0.00 0.00 0.00 2.57
2976 5097 6.106648 TCTAGCTAATGATCTTCACATGGG 57.893 41.667 0.00 0.00 0.00 4.00
3015 5136 3.904136 AAGCAATCCAAACTGTTCGAG 57.096 42.857 0.00 0.00 0.00 4.04
3052 5173 1.896220 TGCACCCAGTTGATCAAGAC 58.104 50.000 8.80 0.00 0.00 3.01
3149 5284 5.337578 TCATCTTCAATCATGGTACGACA 57.662 39.130 0.00 0.00 0.00 4.35
3160 5295 1.068895 TGGTACGACAACGAACACCAT 59.931 47.619 0.00 0.00 40.83 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 43 5.125257 TGCATGTGTTATGTTATTCCACCAG 59.875 40.000 0.00 0.00 0.00 4.00
178 192 4.443598 GGGATCAGCTCTCGTCCTATTTTT 60.444 45.833 0.00 0.00 0.00 1.94
181 195 2.243810 GGGATCAGCTCTCGTCCTATT 58.756 52.381 0.00 0.00 0.00 1.73
183 197 0.178987 GGGGATCAGCTCTCGTCCTA 60.179 60.000 0.00 0.00 0.00 2.94
185 199 1.758514 TGGGGATCAGCTCTCGTCC 60.759 63.158 0.00 0.00 0.00 4.79
186 200 1.439644 GTGGGGATCAGCTCTCGTC 59.560 63.158 0.00 0.00 0.00 4.20
187 201 2.060980 GGTGGGGATCAGCTCTCGT 61.061 63.158 0.00 0.00 40.48 4.18
188 202 2.801631 GGGTGGGGATCAGCTCTCG 61.802 68.421 0.00 0.00 43.01 4.04
192 210 2.204136 TGTGGGTGGGGATCAGCT 60.204 61.111 0.00 0.00 43.01 4.24
193 211 2.273449 CTGTGGGTGGGGATCAGC 59.727 66.667 0.00 0.00 42.74 4.26
207 225 3.025322 TGAATGGTGGTTTTGACCTGT 57.975 42.857 0.00 0.00 34.26 4.00
217 235 2.193127 TCTCCCGTAATGAATGGTGGT 58.807 47.619 0.00 0.00 31.53 4.16
219 237 4.261801 AGTTTCTCCCGTAATGAATGGTG 58.738 43.478 0.00 0.00 31.53 4.17
220 238 4.569719 AGTTTCTCCCGTAATGAATGGT 57.430 40.909 0.00 0.00 31.53 3.55
230 249 3.467803 CAGTGAAGAAAGTTTCTCCCGT 58.532 45.455 18.28 2.88 39.61 5.28
256 275 2.935481 AAGGCTGCACGTAGTACTAC 57.065 50.000 21.06 21.06 41.61 2.73
257 276 3.947910 AAAAGGCTGCACGTAGTACTA 57.052 42.857 0.50 0.00 41.61 1.82
258 277 2.833631 AAAAGGCTGCACGTAGTACT 57.166 45.000 0.00 0.00 41.61 2.73
259 278 2.159037 GGAAAAAGGCTGCACGTAGTAC 59.841 50.000 0.50 0.00 41.61 2.73
260 279 2.224329 TGGAAAAAGGCTGCACGTAGTA 60.224 45.455 0.50 0.00 41.61 1.82
262 281 1.069227 GTGGAAAAAGGCTGCACGTAG 60.069 52.381 0.50 0.00 0.00 3.51
263 282 0.948678 GTGGAAAAAGGCTGCACGTA 59.051 50.000 0.50 0.00 0.00 3.57
264 283 1.733526 GTGGAAAAAGGCTGCACGT 59.266 52.632 0.50 0.00 0.00 4.49
418 444 0.522076 GTGTACGCGAACGGGAGTAG 60.522 60.000 15.93 0.00 46.69 2.57
459 492 3.581687 GATCGATCGGCCAGGGCTC 62.582 68.421 16.41 1.50 41.60 4.70
807 2803 1.467734 AGCGTGGTACAGAACTACTCG 59.532 52.381 0.00 0.00 41.80 4.18
811 2807 2.422479 CAGCTAGCGTGGTACAGAACTA 59.578 50.000 9.55 0.00 41.80 2.24
813 2809 1.630148 CAGCTAGCGTGGTACAGAAC 58.370 55.000 9.55 0.00 41.80 3.01
814 2810 0.108804 GCAGCTAGCGTGGTACAGAA 60.109 55.000 9.55 0.00 41.80 3.02
815 2811 1.511305 GCAGCTAGCGTGGTACAGA 59.489 57.895 9.55 0.00 41.80 3.41
816 2812 4.094684 GCAGCTAGCGTGGTACAG 57.905 61.111 9.55 0.00 41.80 2.74
997 3013 5.766670 TGTACTGGTCCTGGTTATATACGAG 59.233 44.000 0.33 0.00 32.82 4.18
1029 3045 0.827507 GCCTTTTCAGCCTTGTCCCA 60.828 55.000 0.00 0.00 0.00 4.37
1165 3198 2.581354 CTGAGGAAGGACGCCAGG 59.419 66.667 0.00 0.00 0.00 4.45
1192 3225 1.764454 GGAGGAGGAGAAGGAGGCC 60.764 68.421 0.00 0.00 0.00 5.19
1543 3582 1.137825 CCTGACGAGCGACCTCTTC 59.862 63.158 0.00 0.00 37.01 2.87
1588 3627 2.754658 GAGGAGGACGAAGGCCGA 60.755 66.667 0.00 0.00 41.76 5.54
1714 3753 0.317160 TCGTGAACCGCTTCATCTGT 59.683 50.000 0.00 0.00 38.69 3.41
1744 3783 1.737008 GTCGAAGTCCTGGAACGCC 60.737 63.158 0.00 0.00 0.00 5.68
1971 4010 2.514128 CAGGCCTGCTAGCTGCTG 60.514 66.667 22.33 17.75 43.37 4.41
2005 4044 0.096976 GATCGACACGTTTGGCATGG 59.903 55.000 0.00 0.00 0.00 3.66
2015 4054 1.965083 AAGAACAGACGATCGACACG 58.035 50.000 24.34 13.36 0.00 4.49
2019 4058 3.428999 GGGATGAAAGAACAGACGATCGA 60.429 47.826 24.34 0.00 0.00 3.59
2020 4059 2.860735 GGGATGAAAGAACAGACGATCG 59.139 50.000 14.88 14.88 0.00 3.69
2021 4060 4.130286 AGGGATGAAAGAACAGACGATC 57.870 45.455 0.00 0.00 0.00 3.69
2022 4061 4.956700 TCTAGGGATGAAAGAACAGACGAT 59.043 41.667 0.00 0.00 0.00 3.73
2039 4078 4.771054 ACCACTACTGTACAAACTCTAGGG 59.229 45.833 0.00 0.00 0.00 3.53
2040 4079 5.979288 ACCACTACTGTACAAACTCTAGG 57.021 43.478 0.00 0.00 0.00 3.02
2041 4080 9.393512 AGTATACCACTACTGTACAAACTCTAG 57.606 37.037 0.00 0.00 34.98 2.43
2043 4082 8.647256 AAGTATACCACTACTGTACAAACTCT 57.353 34.615 0.00 0.00 36.04 3.24
2044 4083 8.738106 AGAAGTATACCACTACTGTACAAACTC 58.262 37.037 0.00 0.00 36.04 3.01
2045 4084 8.647256 AGAAGTATACCACTACTGTACAAACT 57.353 34.615 0.00 0.00 36.04 2.66
2046 4085 9.780413 GTAGAAGTATACCACTACTGTACAAAC 57.220 37.037 20.38 3.84 36.04 2.93
2047 4086 8.668353 CGTAGAAGTATACCACTACTGTACAAA 58.332 37.037 22.78 0.00 36.04 2.83
2048 4087 7.824289 ACGTAGAAGTATACCACTACTGTACAA 59.176 37.037 22.78 0.00 36.04 2.41
2056 4095 6.060136 AGCATCACGTAGAAGTATACCACTA 58.940 40.000 0.00 1.17 36.04 2.74
2059 4098 4.885325 TGAGCATCACGTAGAAGTATACCA 59.115 41.667 0.00 0.00 42.56 3.25
2060 4099 5.434352 TGAGCATCACGTAGAAGTATACC 57.566 43.478 0.00 0.00 42.56 2.73
2093 4132 8.930982 GCGTTTACAAAATCAAATCGATACTAC 58.069 33.333 0.00 0.00 32.51 2.73
2094 4133 7.842239 CGCGTTTACAAAATCAAATCGATACTA 59.158 33.333 0.00 0.00 32.51 1.82
2095 4134 6.681178 CGCGTTTACAAAATCAAATCGATACT 59.319 34.615 0.00 0.00 32.51 2.12
2096 4135 6.463576 ACGCGTTTACAAAATCAAATCGATAC 59.536 34.615 5.58 0.00 32.51 2.24
2097 4136 6.463262 CACGCGTTTACAAAATCAAATCGATA 59.537 34.615 10.22 0.00 32.51 2.92
2098 4137 5.282778 CACGCGTTTACAAAATCAAATCGAT 59.717 36.000 10.22 0.00 35.12 3.59
2100 4139 4.609295 TCACGCGTTTACAAAATCAAATCG 59.391 37.500 10.22 0.00 0.00 3.34
2101 4140 6.304445 TCATCACGCGTTTACAAAATCAAATC 59.696 34.615 10.22 0.00 0.00 2.17
2102 4141 6.146216 TCATCACGCGTTTACAAAATCAAAT 58.854 32.000 10.22 0.00 0.00 2.32
2117 4159 2.332104 CAGAATAGGGATCATCACGCG 58.668 52.381 3.53 3.53 0.00 6.01
2119 4161 4.562347 CCTTCCAGAATAGGGATCATCACG 60.562 50.000 0.00 0.00 33.63 4.35
2129 4171 7.115414 ACTTCTTCAATTCCTTCCAGAATAGG 58.885 38.462 0.00 0.00 35.40 2.57
2130 4172 8.572855 AACTTCTTCAATTCCTTCCAGAATAG 57.427 34.615 0.00 0.00 35.40 1.73
2165 4208 3.638160 TGCTTTCACTCCTGCTGATTTTT 59.362 39.130 0.00 0.00 0.00 1.94
2167 4210 2.867624 TGCTTTCACTCCTGCTGATTT 58.132 42.857 0.00 0.00 0.00 2.17
2168 4211 2.574006 TGCTTTCACTCCTGCTGATT 57.426 45.000 0.00 0.00 0.00 2.57
2169 4212 2.803030 ATGCTTTCACTCCTGCTGAT 57.197 45.000 0.00 0.00 0.00 2.90
2170 4213 3.701205 TTATGCTTTCACTCCTGCTGA 57.299 42.857 0.00 0.00 0.00 4.26
2171 4214 4.978083 AATTATGCTTTCACTCCTGCTG 57.022 40.909 0.00 0.00 0.00 4.41
2172 4215 5.717119 CAAAATTATGCTTTCACTCCTGCT 58.283 37.500 0.00 0.00 0.00 4.24
2176 4219 6.424812 ACTTTGCAAAATTATGCTTTCACTCC 59.575 34.615 13.84 0.00 46.54 3.85
2190 4233 2.285756 TCGTTCGTCGACTTTGCAAAAT 59.714 40.909 13.84 2.20 44.01 1.82
2218 4309 1.163420 AAGGATGCGTGTGTGCGAAA 61.163 50.000 0.00 0.00 37.81 3.46
2221 4313 2.174107 CAAGGATGCGTGTGTGCG 59.826 61.111 0.00 0.00 37.81 5.34
2313 4405 5.567037 TTCTCATCTTGGAAAAGAGGACA 57.433 39.130 0.00 0.00 35.03 4.02
2337 4429 9.406828 TGAAGTGTAGCTAGCGTATAAAATATG 57.593 33.333 9.55 0.00 0.00 1.78
2341 4433 5.747197 GCTGAAGTGTAGCTAGCGTATAAAA 59.253 40.000 9.55 0.00 38.14 1.52
2428 4521 6.257849 GCTTATGTTCTTGTCCATTATGACGA 59.742 38.462 0.00 0.00 38.11 4.20
2429 4522 6.037062 TGCTTATGTTCTTGTCCATTATGACG 59.963 38.462 0.00 0.00 38.11 4.35
2430 4523 7.320443 TGCTTATGTTCTTGTCCATTATGAC 57.680 36.000 0.00 0.00 35.77 3.06
2431 4524 7.611467 ACTTGCTTATGTTCTTGTCCATTATGA 59.389 33.333 0.00 0.00 0.00 2.15
2432 4525 7.765307 ACTTGCTTATGTTCTTGTCCATTATG 58.235 34.615 0.00 0.00 0.00 1.90
2433 4526 7.944729 ACTTGCTTATGTTCTTGTCCATTAT 57.055 32.000 0.00 0.00 0.00 1.28
2434 4527 8.726988 GTTACTTGCTTATGTTCTTGTCCATTA 58.273 33.333 0.00 0.00 0.00 1.90
2435 4528 7.448469 AGTTACTTGCTTATGTTCTTGTCCATT 59.552 33.333 0.00 0.00 0.00 3.16
2436 4529 6.942576 AGTTACTTGCTTATGTTCTTGTCCAT 59.057 34.615 0.00 0.00 0.00 3.41
2437 4530 6.296026 AGTTACTTGCTTATGTTCTTGTCCA 58.704 36.000 0.00 0.00 0.00 4.02
2438 4531 6.803154 AGTTACTTGCTTATGTTCTTGTCC 57.197 37.500 0.00 0.00 0.00 4.02
2439 4532 8.770828 TGTAAGTTACTTGCTTATGTTCTTGTC 58.229 33.333 13.79 0.00 32.01 3.18
2440 4533 8.557029 GTGTAAGTTACTTGCTTATGTTCTTGT 58.443 33.333 13.79 0.00 32.01 3.16
2441 4534 8.556194 TGTGTAAGTTACTTGCTTATGTTCTTG 58.444 33.333 13.79 0.00 32.01 3.02
2442 4535 8.671384 TGTGTAAGTTACTTGCTTATGTTCTT 57.329 30.769 13.79 0.00 32.01 2.52
2443 4536 8.848474 ATGTGTAAGTTACTTGCTTATGTTCT 57.152 30.769 13.79 0.00 32.01 3.01
2469 4562 9.884814 ATGGAGGTAGTAACATAGTCTAGAAAT 57.115 33.333 0.00 0.00 0.00 2.17
2478 4571 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
2479 4572 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
2480 4573 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
2481 4574 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
2487 4580 4.950361 TGTTTCTACCCACTATGGAGGTA 58.050 43.478 0.00 3.53 40.96 3.08
2488 4581 3.798515 TGTTTCTACCCACTATGGAGGT 58.201 45.455 0.00 1.66 40.96 3.85
2489 4582 4.656112 AGATGTTTCTACCCACTATGGAGG 59.344 45.833 0.00 0.00 40.96 4.30
2490 4583 5.878406 AGATGTTTCTACCCACTATGGAG 57.122 43.478 0.00 0.00 40.96 3.86
2491 4584 6.844388 ACATAGATGTTTCTACCCACTATGGA 59.156 38.462 0.81 0.00 37.45 3.41
2492 4585 7.067496 ACATAGATGTTTCTACCCACTATGG 57.933 40.000 0.81 0.00 37.90 2.74
2493 4586 8.861086 ACTACATAGATGTTTCTACCCACTATG 58.139 37.037 0.00 0.00 41.97 2.23
2494 4587 8.861086 CACTACATAGATGTTTCTACCCACTAT 58.139 37.037 0.00 0.00 41.97 2.12
2495 4588 7.837689 ACACTACATAGATGTTTCTACCCACTA 59.162 37.037 0.00 0.00 41.97 2.74
2496 4589 6.668283 ACACTACATAGATGTTTCTACCCACT 59.332 38.462 0.00 0.00 41.97 4.00
2497 4590 6.875076 ACACTACATAGATGTTTCTACCCAC 58.125 40.000 0.00 0.00 41.97 4.61
2498 4591 6.666113 TGACACTACATAGATGTTTCTACCCA 59.334 38.462 0.00 0.00 41.97 4.51
2499 4592 7.108841 TGACACTACATAGATGTTTCTACCC 57.891 40.000 0.00 0.00 41.97 3.69
2500 4593 7.169982 GCATGACACTACATAGATGTTTCTACC 59.830 40.741 0.00 0.00 41.97 3.18
2501 4594 7.706607 TGCATGACACTACATAGATGTTTCTAC 59.293 37.037 0.00 0.00 41.97 2.59
2502 4595 7.781056 TGCATGACACTACATAGATGTTTCTA 58.219 34.615 0.00 0.00 41.97 2.10
2503 4596 6.643388 TGCATGACACTACATAGATGTTTCT 58.357 36.000 0.00 0.00 41.97 2.52
2504 4597 6.908870 TGCATGACACTACATAGATGTTTC 57.091 37.500 0.00 0.00 41.97 2.78
2505 4598 6.183360 CGTTGCATGACACTACATAGATGTTT 60.183 38.462 0.00 0.00 41.97 2.83
2506 4599 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
2507 4600 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
2508 4601 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
2509 4602 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
2510 4603 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
2511 4604 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
2512 4605 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
2513 4606 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
2514 4607 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
2515 4608 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
2516 4609 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
2517 4610 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
2518 4611 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
2519 4612 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
2520 4613 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
2521 4614 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
2560 4653 4.439426 CCGGAACATCACACACTTCAAAAA 60.439 41.667 0.00 0.00 0.00 1.94
2561 4654 3.066064 CCGGAACATCACACACTTCAAAA 59.934 43.478 0.00 0.00 0.00 2.44
2562 4655 2.616376 CCGGAACATCACACACTTCAAA 59.384 45.455 0.00 0.00 0.00 2.69
2563 4656 2.217750 CCGGAACATCACACACTTCAA 58.782 47.619 0.00 0.00 0.00 2.69
2564 4657 1.140052 ACCGGAACATCACACACTTCA 59.860 47.619 9.46 0.00 0.00 3.02
2565 4658 1.878953 ACCGGAACATCACACACTTC 58.121 50.000 9.46 0.00 0.00 3.01
2566 4659 3.135994 GTTACCGGAACATCACACACTT 58.864 45.455 9.46 0.00 38.02 3.16
2567 4660 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
2568 4661 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
2569 4662 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
2570 4663 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
2571 4664 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
2572 4665 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
2573 4666 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
2574 4667 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
2575 4668 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
2592 4685 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
2593 4686 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
2594 4687 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
2595 4688 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
2596 4689 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
2597 4690 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
2598 4691 1.428869 AAGAGAGAGGTGCTTGTGGT 58.571 50.000 0.00 0.00 0.00 4.16
2599 4692 2.557920 AAAGAGAGAGGTGCTTGTGG 57.442 50.000 0.00 0.00 0.00 4.17
2600 4693 7.672983 TTTAATAAAGAGAGAGGTGCTTGTG 57.327 36.000 0.00 0.00 0.00 3.33
2604 4697 9.553064 CACATATTTAATAAAGAGAGAGGTGCT 57.447 33.333 0.00 0.00 0.00 4.40
2605 4698 8.286097 GCACATATTTAATAAAGAGAGAGGTGC 58.714 37.037 0.00 0.00 37.76 5.01
2606 4699 8.778358 GGCACATATTTAATAAAGAGAGAGGTG 58.222 37.037 0.00 0.00 0.00 4.00
2607 4700 8.494433 TGGCACATATTTAATAAAGAGAGAGGT 58.506 33.333 0.00 0.00 0.00 3.85
2608 4701 8.778358 GTGGCACATATTTAATAAAGAGAGAGG 58.222 37.037 13.86 0.00 44.52 3.69
2609 4702 9.330063 TGTGGCACATATTTAATAAAGAGAGAG 57.670 33.333 17.96 0.00 44.52 3.20
2610 4703 9.851686 ATGTGGCACATATTTAATAAAGAGAGA 57.148 29.630 30.56 0.00 44.52 3.10
2615 4708 9.964303 TGCTTATGTGGCACATATTTAATAAAG 57.036 29.630 33.89 27.40 44.52 1.85
2618 4711 9.964303 CTTTGCTTATGTGGCACATATTTAATA 57.036 29.630 33.89 20.30 44.52 0.98
2619 4712 8.477256 ACTTTGCTTATGTGGCACATATTTAAT 58.523 29.630 33.89 15.77 44.52 1.40
2620 4713 7.835822 ACTTTGCTTATGTGGCACATATTTAA 58.164 30.769 33.89 25.24 44.52 1.52
2621 4714 7.403312 ACTTTGCTTATGTGGCACATATTTA 57.597 32.000 33.89 21.55 44.52 1.40
2622 4715 6.284891 ACTTTGCTTATGTGGCACATATTT 57.715 33.333 33.89 17.52 44.52 1.40
2623 4716 5.920193 ACTTTGCTTATGTGGCACATATT 57.080 34.783 33.89 17.87 44.52 1.28
2624 4717 5.185635 ACAACTTTGCTTATGTGGCACATAT 59.814 36.000 33.89 18.57 44.52 1.78
2625 4718 4.522405 ACAACTTTGCTTATGTGGCACATA 59.478 37.500 31.06 31.06 44.52 2.29
2626 4719 3.321682 ACAACTTTGCTTATGTGGCACAT 59.678 39.130 33.18 33.18 44.52 3.21
2627 4720 2.692557 ACAACTTTGCTTATGTGGCACA 59.307 40.909 24.36 24.36 39.55 4.57
2628 4721 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
2629 4722 5.468592 CAATACAACTTTGCTTATGTGGCA 58.531 37.500 0.00 0.00 37.97 4.92
2630 4723 4.864247 CCAATACAACTTTGCTTATGTGGC 59.136 41.667 0.00 0.00 0.00 5.01
2631 4724 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
2632 4725 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
2633 4726 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
2634 4727 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
2635 4728 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
2636 4729 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
2637 4730 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
2638 4731 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
2639 4732 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
2640 4733 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
2641 4734 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
2642 4735 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
2643 4736 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
2644 4737 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
2645 4738 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
2646 4739 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
2647 4740 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
2653 4746 3.678056 TGGGAGTAACATCACACACTC 57.322 47.619 0.00 0.00 37.32 3.51
2654 4747 3.391296 ACTTGGGAGTAACATCACACACT 59.609 43.478 0.00 0.00 30.61 3.55
2655 4748 3.740115 ACTTGGGAGTAACATCACACAC 58.260 45.455 0.00 0.00 30.61 3.82
2656 4749 4.385825 GAACTTGGGAGTAACATCACACA 58.614 43.478 0.00 0.00 34.21 3.72
2657 4750 3.751698 GGAACTTGGGAGTAACATCACAC 59.248 47.826 0.00 0.00 34.21 3.82
2658 4751 3.650942 AGGAACTTGGGAGTAACATCACA 59.349 43.478 0.00 0.00 34.21 3.58
2659 4752 4.254492 GAGGAACTTGGGAGTAACATCAC 58.746 47.826 0.00 0.00 41.55 3.06
2660 4753 3.263425 GGAGGAACTTGGGAGTAACATCA 59.737 47.826 0.00 0.00 41.55 3.07
2661 4754 3.370633 GGGAGGAACTTGGGAGTAACATC 60.371 52.174 0.00 0.00 41.55 3.06
2662 4755 2.576648 GGGAGGAACTTGGGAGTAACAT 59.423 50.000 0.00 0.00 41.55 2.71
2663 4756 1.982958 GGGAGGAACTTGGGAGTAACA 59.017 52.381 0.00 0.00 41.55 2.41
2664 4757 1.281287 GGGGAGGAACTTGGGAGTAAC 59.719 57.143 0.00 0.00 41.55 2.50
2665 4758 1.132332 TGGGGAGGAACTTGGGAGTAA 60.132 52.381 0.00 0.00 41.55 2.24
2666 4759 0.494551 TGGGGAGGAACTTGGGAGTA 59.505 55.000 0.00 0.00 41.55 2.59
2667 4760 0.178831 ATGGGGAGGAACTTGGGAGT 60.179 55.000 0.00 0.00 41.55 3.85
2668 4761 1.002857 AATGGGGAGGAACTTGGGAG 58.997 55.000 0.00 0.00 41.55 4.30
2669 4762 0.704076 CAATGGGGAGGAACTTGGGA 59.296 55.000 0.00 0.00 41.55 4.37
2670 4763 0.409484 ACAATGGGGAGGAACTTGGG 59.591 55.000 0.00 0.00 41.55 4.12
2671 4764 1.075374 TCACAATGGGGAGGAACTTGG 59.925 52.381 0.00 0.00 41.55 3.61
2672 4765 2.162681 GTCACAATGGGGAGGAACTTG 58.837 52.381 0.00 0.00 41.55 3.16
2673 4766 1.075536 GGTCACAATGGGGAGGAACTT 59.924 52.381 0.00 0.00 41.55 2.66
2675 4768 0.404040 TGGTCACAATGGGGAGGAAC 59.596 55.000 0.00 0.00 0.00 3.62
2676 4769 0.698238 CTGGTCACAATGGGGAGGAA 59.302 55.000 0.00 0.00 0.00 3.36
2677 4770 1.852157 GCTGGTCACAATGGGGAGGA 61.852 60.000 0.00 0.00 0.00 3.71
2678 4771 1.379044 GCTGGTCACAATGGGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
2679 4772 1.379044 GGCTGGTCACAATGGGGAG 60.379 63.158 0.00 0.00 0.00 4.30
2680 4773 1.852157 AGGCTGGTCACAATGGGGA 60.852 57.895 0.00 0.00 0.00 4.81
2681 4774 1.379044 GAGGCTGGTCACAATGGGG 60.379 63.158 0.00 0.00 0.00 4.96
2682 4775 0.251297 TTGAGGCTGGTCACAATGGG 60.251 55.000 0.00 0.00 0.00 4.00
2683 4776 1.171308 CTTGAGGCTGGTCACAATGG 58.829 55.000 0.00 0.00 0.00 3.16
2684 4777 1.808945 GTCTTGAGGCTGGTCACAATG 59.191 52.381 0.00 0.00 0.00 2.82
2685 4778 1.609061 CGTCTTGAGGCTGGTCACAAT 60.609 52.381 0.00 0.00 0.00 2.71
2686 4779 0.249868 CGTCTTGAGGCTGGTCACAA 60.250 55.000 0.00 0.00 0.00 3.33
2687 4780 1.112916 TCGTCTTGAGGCTGGTCACA 61.113 55.000 0.00 0.00 0.00 3.58
2688 4781 0.247736 ATCGTCTTGAGGCTGGTCAC 59.752 55.000 0.00 0.00 0.00 3.67
2689 4782 0.247460 CATCGTCTTGAGGCTGGTCA 59.753 55.000 0.00 0.00 0.00 4.02
2690 4783 0.460987 CCATCGTCTTGAGGCTGGTC 60.461 60.000 0.00 0.00 0.00 4.02
2691 4784 1.599047 CCATCGTCTTGAGGCTGGT 59.401 57.895 0.00 0.00 0.00 4.00
2692 4785 1.817099 GCCATCGTCTTGAGGCTGG 60.817 63.158 0.00 8.34 43.70 4.85
2693 4786 2.169789 CGCCATCGTCTTGAGGCTG 61.170 63.158 0.00 0.00 44.85 4.85
2694 4787 2.185350 CGCCATCGTCTTGAGGCT 59.815 61.111 0.00 0.00 44.85 4.58
2695 4788 3.567797 GCGCCATCGTCTTGAGGC 61.568 66.667 0.00 0.00 43.61 4.70
2696 4789 2.892425 GGCGCCATCGTCTTGAGG 60.892 66.667 24.80 0.00 37.34 3.86
2753 4871 2.095213 TCGACACAAAACTGCTGTGAAC 59.905 45.455 9.75 3.41 45.80 3.18
2758 4876 1.002576 TGCATCGACACAAAACTGCTG 60.003 47.619 5.13 0.00 0.00 4.41
2775 4893 3.450578 AGTTTTCTAGACGAAACGTGCA 58.549 40.909 12.29 0.00 41.37 4.57
2799 4917 3.379057 CGCTCATAATTAACCGGGGTTTT 59.621 43.478 6.32 0.71 39.31 2.43
2802 4920 1.487558 ACGCTCATAATTAACCGGGGT 59.512 47.619 6.32 0.00 0.00 4.95
2834 4954 4.338118 TGTGTTGACCAAAATTCTGAGACC 59.662 41.667 0.00 0.00 0.00 3.85
2853 4973 5.357257 CAAGTCTACAGTGGTAACTTGTGT 58.643 41.667 18.33 0.00 39.88 3.72
2887 5007 4.632153 GTTCGGCTAACATATGATGGTCT 58.368 43.478 10.38 0.00 38.05 3.85
2989 5110 3.221771 ACAGTTTGGATTGCTTAGCACA 58.778 40.909 6.34 0.00 38.71 4.57
2995 5116 3.476552 TCTCGAACAGTTTGGATTGCTT 58.523 40.909 0.33 0.00 0.00 3.91
3015 5136 8.121305 TGGGTGCATATATATGACCATTTTTC 57.879 34.615 27.52 17.75 36.48 2.29
3128 5263 5.500771 CGTTGTCGTACCATGATTGAAGATG 60.501 44.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.